Coexpression cluster: Cluster_66 (HCCA clusters)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044271 cellular nitrogen compound biosynthetic process 35.29% (30/85) 4.37 0.0 0.0
GO:0008152 metabolic process 71.76% (61/85) 2.25 0.0 0.0
GO:0044237 cellular metabolic process 58.82% (50/85) 2.64 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 40.0% (34/85) 3.69 0.0 0.0
GO:0034645 cellular macromolecule biosynthetic process 30.59% (26/85) 4.49 0.0 0.0
GO:0009987 cellular process 60.0% (51/85) 2.44 0.0 0.0
GO:0009059 macromolecule biosynthetic process 30.59% (26/85) 4.37 0.0 0.0
GO:0044249 cellular biosynthetic process 35.29% (30/85) 3.87 0.0 0.0
GO:0032991 protein-containing complex 35.29% (30/85) 3.85 0.0 0.0
GO:1901576 organic substance biosynthetic process 35.29% (30/85) 3.79 0.0 0.0
GO:0005575 cellular_component 51.76% (44/85) 2.67 0.0 0.0
GO:0009058 biosynthetic process 35.29% (30/85) 3.64 0.0 0.0
GO:0044464 cell part 38.82% (33/85) 3.22 0.0 0.0
GO:0044424 intracellular part 37.65% (32/85) 3.28 0.0 0.0
GO:0008150 biological_process 72.94% (62/85) 1.69 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 24.71% (21/85) 4.11 0.0 0.0
GO:0005840 ribosome 20.0% (17/85) 4.6 0.0 0.0
GO:0006412 translation 20.0% (17/85) 4.58 0.0 0.0
GO:0003735 structural constituent of ribosome 20.0% (17/85) 4.57 0.0 0.0
GO:0043043 peptide biosynthetic process 20.0% (17/85) 4.55 0.0 0.0
GO:0006518 peptide metabolic process 20.0% (17/85) 4.52 0.0 0.0
GO:0043604 amide biosynthetic process 20.0% (17/85) 4.51 0.0 0.0
GO:0005198 structural molecule activity 20.0% (17/85) 4.48 0.0 0.0
GO:0043603 cellular amide metabolic process 20.0% (17/85) 4.45 0.0 0.0
GO:0043228 non-membrane-bounded organelle 20.0% (17/85) 4.43 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 20.0% (17/85) 4.43 0.0 0.0
GO:1990904 ribonucleoprotein complex 20.0% (17/85) 4.39 0.0 0.0
GO:0044436 thylakoid part 14.12% (12/85) 5.51 0.0 0.0
GO:0009521 photosystem 12.94% (11/85) 5.67 0.0 0.0
GO:0044444 cytoplasmic part 21.18% (18/85) 3.79 0.0 0.0
GO:0006807 nitrogen compound metabolic process 41.18% (35/85) 2.19 0.0 0.0
GO:0098796 membrane protein complex 15.29% (13/85) 4.74 0.0 0.0
GO:0009767 photosynthetic electron transport chain 8.24% (7/85) 7.29 0.0 0.0
GO:0019684 photosynthesis, light reaction 8.24% (7/85) 7.29 0.0 0.0
GO:0034654 nucleobase-containing compound biosynthetic process 15.29% (13/85) 4.5 0.0 0.0
GO:0003899 DNA-directed 5'-3' RNA polymerase activity 10.59% (9/85) 5.85 0.0 0.0
GO:0034062 5'-3' RNA polymerase activity 10.59% (9/85) 5.74 0.0 0.0
GO:0097747 RNA polymerase activity 10.59% (9/85) 5.74 0.0 0.0
GO:0022900 electron transport chain 8.24% (7/85) 6.82 0.0 0.0
GO:0043229 intracellular organelle 21.18% (18/85) 3.32 0.0 0.0
GO:0043226 organelle 21.18% (18/85) 3.32 0.0 0.0
GO:0071704 organic substance metabolic process 42.35% (36/85) 1.91 0.0 0.0
GO:0019438 aromatic compound biosynthetic process 15.29% (13/85) 4.19 0.0 0.0
GO:0044260 cellular macromolecule metabolic process 32.94% (28/85) 2.32 0.0 0.0
GO:0018130 heterocycle biosynthetic process 15.29% (13/85) 4.15 0.0 0.0
GO:0044238 primary metabolic process 41.18% (35/85) 1.93 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 20.0% (17/85) 3.32 0.0 0.0
GO:1901362 organic cyclic compound biosynthetic process 15.29% (13/85) 4.04 0.0 0.0
GO:0050136 NADH dehydrogenase (quinone) activity 7.06% (6/85) 7.15 0.0 0.0
GO:0008137 NADH dehydrogenase (ubiquinone) activity 7.06% (6/85) 7.15 0.0 0.0
GO:0003954 NADH dehydrogenase activity 7.06% (6/85) 7.15 0.0 0.0
GO:0016651 oxidoreductase activity, acting on NAD(P)H 8.24% (7/85) 6.38 0.0 0.0
GO:0043170 macromolecule metabolic process 35.29% (30/85) 2.08 0.0 0.0
GO:0097659 nucleic acid-templated transcription 10.59% (9/85) 5.18 0.0 0.0
GO:0006351 transcription, DNA-templated 10.59% (9/85) 5.18 0.0 0.0
GO:0006725 cellular aromatic compound metabolic process 20.0% (17/85) 3.16 0.0 0.0
GO:0046483 heterocycle metabolic process 20.0% (17/85) 3.16 0.0 0.0
GO:1901360 organic cyclic compound metabolic process 20.0% (17/85) 3.13 0.0 0.0
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor 7.06% (6/85) 6.85 0.0 0.0
GO:0009055 electron transfer activity 11.76% (10/85) 4.54 0.0 0.0
GO:0016779 nucleotidyltransferase activity 10.59% (9/85) 4.88 0.0 0.0
GO:0044425 membrane part 20.0% (17/85) 2.98 0.0 0.0
GO:0015979 photosynthesis 9.41% (8/85) 5.23 0.0 0.0
GO:0032774 RNA biosynthetic process 10.59% (9/85) 4.68 0.0 0.0
GO:0006091 generation of precursor metabolites and energy 8.24% (7/85) 5.63 0.0 0.0
GO:0016020 membrane 18.82% (16/85) 2.96 0.0 0.0
GO:0003674 molecular_function 69.41% (59/85) 0.96 0.0 0.0
GO:0009539 photosystem II reaction center 5.88% (5/85) 6.89 0.0 0.0
GO:0055114 oxidation-reduction process 20.0% (17/85) 2.59 0.0 0.0
GO:0016070 RNA metabolic process 12.94% (11/85) 3.5 0.0 0.0
GO:0090304 nucleic acid metabolic process 14.12% (12/85) 3.18 0.0 0.0
GO:0016491 oxidoreductase activity 20.0% (17/85) 2.45 0.0 0.0
GO:0009772 photosynthetic electron transport in photosystem II 3.53% (3/85) 8.66 0.0 0.0
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity 3.53% (3/85) 8.66 0.0 0.0
GO:0016168 chlorophyll binding 4.71% (4/85) 6.85 0.0 0.0
GO:0140098 catalytic activity, acting on RNA 10.59% (9/85) 3.67 0.0 0.0
GO:1901564 organonitrogen compound metabolic process 27.06% (23/85) 1.85 0.0 0.0
GO:0009523 photosystem II 5.88% (5/85) 5.28 0.0 1e-06
GO:1902600 proton transmembrane transport 5.88% (5/85) 5.07 0.0 1e-06
GO:0015985 energy coupled proton transport, down electrochemical gradient 4.71% (4/85) 6.01 0.0 1e-06
GO:0015986 ATP synthesis coupled proton transport 4.71% (4/85) 6.01 0.0 1e-06
GO:0044267 cellular protein metabolic process 21.18% (18/85) 1.99 0.0 1e-06
GO:0046034 ATP metabolic process 5.88% (5/85) 4.87 1e-06 2e-06
GO:0009144 purine nucleoside triphosphate metabolic process 5.88% (5/85) 4.85 1e-06 2e-06
GO:0009199 ribonucleoside triphosphate metabolic process 5.88% (5/85) 4.85 1e-06 2e-06
GO:0009205 purine ribonucleoside triphosphate metabolic process 5.88% (5/85) 4.85 1e-06 2e-06
GO:0009126 purine nucleoside monophosphate metabolic process 5.88% (5/85) 4.81 1e-06 3e-06
GO:0009167 purine ribonucleoside monophosphate metabolic process 5.88% (5/85) 4.81 1e-06 3e-06
GO:0009123 nucleoside monophosphate metabolic process 5.88% (5/85) 4.81 1e-06 3e-06
GO:0009161 ribonucleoside monophosphate metabolic process 5.88% (5/85) 4.81 1e-06 3e-06
GO:0009141 nucleoside triphosphate metabolic process 5.88% (5/85) 4.79 1e-06 3e-06
GO:0009150 purine ribonucleotide metabolic process 5.88% (5/85) 4.55 2e-06 6e-06
GO:0009259 ribonucleotide metabolic process 5.88% (5/85) 4.55 2e-06 6e-06
GO:0006163 purine nucleotide metabolic process 5.88% (5/85) 4.49 3e-06 8e-06
GO:0019693 ribose phosphate metabolic process 5.88% (5/85) 4.47 3e-06 8e-06
GO:0072521 purine-containing compound metabolic process 5.88% (5/85) 4.46 3e-06 9e-06
GO:0015672 monovalent inorganic cation transport 5.88% (5/85) 4.41 4e-06 1e-05
GO:0098662 inorganic cation transmembrane transport 5.88% (5/85) 4.41 4e-06 1e-05
GO:0098655 cation transmembrane transport 5.88% (5/85) 4.41 4e-06 1e-05
GO:0098660 inorganic ion transmembrane transport 5.88% (5/85) 4.41 4e-06 1e-05
GO:0034220 ion transmembrane transport 5.88% (5/85) 4.28 6e-06 1.5e-05
GO:0009117 nucleotide metabolic process 5.88% (5/85) 4.22 8e-06 1.8e-05
GO:0019538 protein metabolic process 21.18% (18/85) 1.7 8e-06 1.8e-05
GO:0006753 nucleoside phosphate metabolic process 5.88% (5/85) 4.18 9e-06 2e-05
GO:0009201 ribonucleoside triphosphate biosynthetic process 4.71% (4/85) 4.8 1.3e-05 3e-05
GO:0006754 ATP biosynthetic process 4.71% (4/85) 4.8 1.3e-05 3e-05
GO:0009142 nucleoside triphosphate biosynthetic process 4.71% (4/85) 4.8 1.3e-05 3e-05
GO:0009206 purine ribonucleoside triphosphate biosynthetic process 4.71% (4/85) 4.8 1.3e-05 3e-05
GO:0009145 purine nucleoside triphosphate biosynthetic process 4.71% (4/85) 4.8 1.3e-05 3e-05
GO:0009156 ribonucleoside monophosphate biosynthetic process 4.71% (4/85) 4.73 1.6e-05 3.5e-05
GO:0009127 purine nucleoside monophosphate biosynthetic process 4.71% (4/85) 4.73 1.6e-05 3.5e-05
GO:0009124 nucleoside monophosphate biosynthetic process 4.71% (4/85) 4.73 1.6e-05 3.5e-05
GO:0009168 purine ribonucleoside monophosphate biosynthetic process 4.71% (4/85) 4.73 1.6e-05 3.5e-05
GO:0017144 drug metabolic process 5.88% (5/85) 3.99 1.7e-05 3.5e-05
GO:0055086 nucleobase-containing small molecule metabolic process 5.88% (5/85) 3.98 1.7e-05 3.6e-05
GO:0009260 ribonucleotide biosynthetic process 4.71% (4/85) 4.61 2.2e-05 4.6e-05
GO:0009152 purine ribonucleotide biosynthetic process 4.71% (4/85) 4.61 2.2e-05 4.6e-05
GO:0046390 ribose phosphate biosynthetic process 4.71% (4/85) 4.61 2.2e-05 4.6e-05
GO:0006164 purine nucleotide biosynthetic process 4.71% (4/85) 4.53 2.8e-05 5.8e-05
GO:0072522 purine-containing compound biosynthetic process 4.71% (4/85) 4.49 3.2e-05 6.4e-05
GO:1901135 carbohydrate derivative metabolic process 5.88% (5/85) 3.78 3.4e-05 6.7e-05
GO:0009579 thylakoid 2.35% (2/85) 7.66 3.6e-05 7.2e-05
GO:1901137 carbohydrate derivative biosynthetic process 4.71% (4/85) 4.26 5.8e-05 0.000115
GO:1901293 nucleoside phosphate biosynthetic process 4.71% (4/85) 4.25 6.1e-05 0.000118
GO:0009165 nucleotide biosynthetic process 4.71% (4/85) 4.25 6.1e-05 0.000118
GO:0019637 organophosphate metabolic process 5.88% (5/85) 3.5 8.6e-05 0.000165
GO:0090407 organophosphate biosynthetic process 4.71% (4/85) 3.73 0.000247 0.000472
GO:0016021 integral component of membrane 9.41% (8/85) 2.26 0.000274 0.00052
GO:0031224 intrinsic component of membrane 9.41% (8/85) 2.23 0.000308 0.00058
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 2.35% (2/85) 6.07 0.000394 0.000736
GO:0006812 cation transport 5.88% (5/85) 2.94 0.000507 0.000941
GO:0003824 catalytic activity 32.94% (28/85) 0.84 0.000902 0.001661
GO:0046906 tetrapyrrole binding 7.06% (6/85) 2.42 0.00093 0.0017
GO:0048037 cofactor binding 9.41% (8/85) 1.97 0.001035 0.001876
GO:0009522 photosystem I 2.35% (2/85) 5.26 0.001235 0.002224
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain 2.35% (2/85) 5.2 0.001357 0.002424
GO:0006811 ion transport 5.88% (5/85) 2.56 0.001634 0.002898
GO:0003677 DNA binding 9.41% (8/85) 1.8 0.002107 0.00371
GO:0000012 single strand break repair 1.18% (1/85) 8.66 0.002477 0.004331
GO:0044281 small molecule metabolic process 5.88% (5/85) 2.32 0.003387 0.005879
GO:0016772 transferase activity, transferring phosphorus-containing groups 11.76% (10/85) 1.41 0.004344 0.007487
GO:0006397 mRNA processing 2.35% (2/85) 4.17 0.005604 0.009589
GO:0043467 regulation of generation of precursor metabolites and energy 1.18% (1/85) 7.07 0.007414 0.01234
GO:0042548 regulation of photosynthesis, light reaction 1.18% (1/85) 7.07 0.007414 0.01234
GO:0042549 photosystem II stabilization 1.18% (1/85) 7.07 0.007414 0.01234
GO:0010109 regulation of photosynthesis 1.18% (1/85) 7.07 0.007414 0.01234
GO:0016071 mRNA metabolic process 2.35% (2/85) 3.93 0.007701 0.01273
GO:0015078 proton transmembrane transporter activity 2.35% (2/85) 3.63 0.011403 0.018473
GO:0097159 organic cyclic compound binding 22.35% (19/85) 0.79 0.011345 0.018503
GO:1901363 heterocyclic compound binding 22.35% (19/85) 0.79 0.011345 0.018503
GO:0005622 intracellular 3.53% (3/85) 2.66 0.01201 0.019327
GO:0016984 ribulose-bisphosphate carboxylase activity 1.18% (1/85) 6.07 0.014774 0.023312
GO:0048038 quinone binding 1.18% (1/85) 6.07 0.014774 0.023312
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) 1.18% (1/85) 6.07 0.014774 0.023312
GO:0031361 integral component of thylakoid membrane 1.18% (1/85) 5.85 0.017215 0.026645
GO:0031360 intrinsic component of thylakoid membrane 1.18% (1/85) 5.85 0.017215 0.026645
GO:0017004 cytochrome complex assembly 1.18% (1/85) 5.85 0.017215 0.026645
GO:0015077 monovalent inorganic cation transmembrane transporter activity 2.35% (2/85) 3.13 0.021983 0.03381
GO:0015977 carbon fixation 1.18% (1/85) 5.07 0.029332 0.044828
GO:0003684 damaged DNA binding 1.18% (1/85) 4.96 0.031737 0.048201
GO:0003676 nucleic acid binding 10.59% (9/85) 1.02 0.032691 0.049341
GO:0055085 transmembrane transport 5.88% (5/85) 1.49 0.033055 0.049582
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
No similar clusters found
Sequences (85) (download table)

InterPro Domains

GO Terms

Family Terms