ECC pair

{"nodes": [{"data": {"id": "HORVU4Hr1G023110.1", "name": "HORVU4Hr1G023110.1", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 911859, "gene_name": "HORVU4Hr1G023110.1", "network_method_id": 20, "node_type": "query", "gene_link": "/sequence/view/911859", "color": "#CCC", "shape": "ellipse", "description": "transcription factor *(CRF) & subgroup ERF-VI transcription factor", "best_name": "HORVU4Hr1G023110.1", "tokens": null, "interpro": ["AP2/ERF_dom"], "family_name": "OG_42_0000000", "family_id": 959809, "family_url": "/family/view/959809", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#7FFFD4", "family_shape": "hexagon", "lc_label": "AP2/ERF_dom;OG_42_0000000", "lc_color": "#FF3300", "lc_shape": "hexagon", "species_color": "#468B56", "tag": "always_show"}}, {"data": {"id": "PSME_00007285-RA", "name": "PSME_00007285-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 540359, "gene_name": "PSME_00007285-RA", "network_method_id": 15, "node_type": "query", "gene_link": "/sequence/view/540359", "color": "#CCC", "shape": "ellipse", "description": "(at5g50080 : 84.0) encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.; ethylene response factor 110 (ERF110); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G33710.1); Has 6196 Blast hits to 5849 proteins in 257 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6176; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). & (reliability: 168.0) & (original description: no original description)", "best_name": "PSME_00007285-RA", "tokens": null, "interpro": ["AP2/ERF_dom"], "family_name": "OG_42_0000000", "family_id": 959809, "family_url": "/family/view/959809", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#7FFFD4", "family_shape": "hexagon", "lc_label": "AP2/ERF_dom;OG_42_0000000", "lc_color": "#FF3300", "lc_shape": "hexagon", "species_color": "#811DCD", "tag": "always_show"}}, {"data": {"id": "HORVU2Hr1G035970.1", "name": "HORVU2Hr1G035970.1", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 900260, "gene_name": "HORVU2Hr1G035970.1", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/900260", "color": "#CCC", "shape": "ellipse", "description": "N-acetylglutamate synthase", "best_name": "HORVU2Hr1G035970.1", "tokens": null, "interpro": ["GNAT_dom", "Asp/Glu/Uridylate_kinase"], "family_name": "OG_42_0002967", "family_id": 962776, "family_url": "/family/view/962776", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#FFFF00", "family_shape": "hexagon", "lc_label": "Asp/Glu/Uridylate_kinase;GNAT_dom;OG_42_0002967", "lc_color": "#FF3300", "lc_shape": "rectangle", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU3Hr1G040710.1", "name": "HORVU3Hr1G040710.1", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 906871, "gene_name": "HORVU3Hr1G040710.1", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/906871", "color": "#CCC", "shape": "ellipse", "description": "RNA editing factor *(POCO)", "best_name": "HORVU3Hr1G040710.1", "tokens": null, "interpro": ["PPR_long", "PPR_long"], "family_name": "OG_42_0000146", "family_id": 959955, "family_url": "/family/view/959955", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#FF3300", "family_shape": "rectangle", "lc_label": "PPR_long;OG_42_0000146", "lc_color": "#00BFFF", "lc_shape": "rectangle", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU5Hr1G045300.6", "name": "HORVU5Hr1G045300.6", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 916943, "gene_name": "HORVU5Hr1G045300.6", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/916943", "color": "#CCC", "shape": "ellipse", "description": "Unknown function", "best_name": "HORVU5Hr1G045300.6", "tokens": null, "family_name": "OG_42_0001025", "family_id": 960834, "family_url": "/family/view/960834", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#FFE4C4", "family_shape": "roundrectangle", "lc_label": "OG_42_0001025", "lc_color": "#008000", "lc_shape": "roundrectangle", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU4Hr1G052090.1", "name": "HORVU4Hr1G052090.1", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 912861, "gene_name": "HORVU4Hr1G052090.1", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/912861", "color": "#CCC", "shape": "ellipse", "description": "guanylate kinase", "best_name": "HORVU4Hr1G052090.1", "tokens": null, "interpro": ["GK/Ca_channel_bsu"], "family_name": "OG_42_0006865", "family_id": 966674, "family_url": "/family/view/966674", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#A9A9A9", "family_shape": "ellipse", "lc_label": "OG_42_0006865;GK/Ca_channel_bsu", "lc_color": "#FF00FF", "lc_shape": "rectangle", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU3Hr1G002010.4", "name": "HORVU3Hr1G002010.4", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 904975, "gene_name": "HORVU3Hr1G002010.4", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/904975", "color": "#CCC", "shape": "ellipse", "description": "Unknown function", "best_name": "HORVU3Hr1G002010.4", "tokens": null, "interpro": ["Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat"], "family_name": "OG_42_0010112", "family_id": 969921, "family_url": "/family/view/969921", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#993399", "family_shape": "triangle", "lc_label": "OG_42_0001457;OG_42_0010112;OG_42_0009642;Pentatricopeptide_repeat", "lc_color": "#FFE4C4", "lc_shape": "ellipse", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU3Hr1G037450.1", "name": "HORVU3Hr1G037450.1", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 906731, "gene_name": "HORVU3Hr1G037450.1", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/906731", "color": "#CCC", "shape": "ellipse", "description": "Unknown function", "best_name": "HORVU3Hr1G037450.1", "tokens": null, "interpro": ["Znf_RING"], "family_name": "OG_42_0000206", "family_id": 960015, "family_url": "/family/view/960015", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#FFD700", "family_shape": "rectangle", "lc_label": "OG_42_0000206;Znf_RING", "lc_color": "#FF3300", "lc_shape": "roundrectangle", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU3Hr1G013350.1", "name": "HORVU3Hr1G013350.1", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 905496, "gene_name": "HORVU3Hr1G013350.1", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/905496", "color": "#CCC", "shape": "ellipse", "description": "triose-phosphate isomerase & cytosolic triose-phosphate isomerase & EC_5.3 intramolecular oxidoreductase", "best_name": "HORVU3Hr1G013350.1", "tokens": null, "interpro": ["Triosephosphate_isomerase"], "family_name": "OG_42_0001246", "family_id": 961055, "family_url": "/family/view/961055", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#993399", "family_shape": "rectangle", "lc_label": "OG_42_0001246;Triosephosphate_isomerase", "lc_color": "#7FFFD4", "lc_shape": "rectangle", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU3Hr1G110140.7", "name": "HORVU3Hr1G110140.7", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 910228, "gene_name": "HORVU3Hr1G110140.7", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/910228", "color": "#CCC", "shape": "ellipse", "description": "Unknown function", "best_name": "HORVU3Hr1G110140.7", "tokens": null, "interpro": ["Uncharacterised_NUC173"], "family_name": "OG_42_0003160", "family_id": 962969, "family_url": "/family/view/962969", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#FFE4C4", "family_shape": "rectangle", "lc_label": "OG_42_0003160;Uncharacterised_NUC173", "lc_color": "#A9A9A9", "lc_shape": "rectangle", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU1Hr1G092120.1", "name": "HORVU1Hr1G092120.1", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 898163, "gene_name": "HORVU1Hr1G092120.1", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/898163", "color": "#CCC", "shape": "ellipse", "description": "regulatory component *(Tom7) of outer mitochondrion membrane TOM translocation system", "best_name": "HORVU1Hr1G092120.1", "tokens": null, "interpro": ["Tom7"], "family_name": "OG_42_0004626", "family_id": 964435, "family_url": "/family/view/964435", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#FF00FF", "family_shape": "triangle", "lc_label": "Tom7;OG_42_0004626", "lc_color": "#7FFFD4", "lc_shape": "ellipse", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU0Hr1G031700.1", "name": "HORVU0Hr1G031700.1", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 893222, "gene_name": "HORVU0Hr1G031700.1", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/893222", "color": "#CCC", "shape": "ellipse", "description": "hydroxycinnamaldehyde dehydrogenase & EC_1.2 oxidoreductase acting on aldehyde or oxo group of donor", "best_name": "HORVU0Hr1G031700.1", "tokens": null, "interpro": ["Aldehyde_DH_dom"], "family_name": "OG_42_0000747", "family_id": 960556, "family_url": "/family/view/960556", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#FF3300", "family_shape": "triangle", "lc_label": "OG_42_0000747;Aldehyde_DH_dom", "lc_color": "#D2691E", "lc_shape": 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"gene_id": 921574, "gene_name": "HORVU6Hr1G009360.1", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/921574", "color": "#CCC", "shape": "ellipse", "description": "Unknown function", "best_name": "HORVU6Hr1G009360.1", "tokens": null, "interpro": ["Haem_peroxidase_pln/fun/bac"], "family_name": "OG_42_0000036", "family_id": 959845, "family_url": "/family/view/959845", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#ADFF2F", "family_shape": "rectangle", "lc_label": "Haem_peroxidase_pln/fun/bac;OG_42_0000036", "lc_color": "#FFE4C4", "lc_shape": "roundrectangle", "species_color": "#468B56", "tag": "always_show"}}, {"data": {"id": "HORVU1Hr1G052620.1", "name": "HORVU1Hr1G052620.1", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 896064, "gene_name": "HORVU1Hr1G052620.1", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/896064", "color": 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"/family/view/963289", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#FF3300", "family_shape": "hexagon", "lc_label": "OG_42_0003480;Sugar_P_trans_dom", "lc_color": "#FFE4C4", "lc_shape": "rectangle", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU2Hr1G064140.13", "name": "HORVU2Hr1G064140.13", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 901404, "gene_name": "HORVU2Hr1G064140.13", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/901404", "color": "#CCC", "shape": "ellipse", "description": "Unknown function", "best_name": "HORVU2Hr1G064140.13", "tokens": null, "interpro": ["Calcineurin-like_PHP_ApaH"], "family_name": "OG_42_0004316", "family_id": 964125, "family_url": "/family/view/964125", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#D2691E", "family_shape": "ellipse", "lc_label": "Calcineurin-like_PHP_ApaH;Purple_acid_PPase_C_dom;OG_42_0000971;Purple_acid_Pase_N;OG_42_0004316", "lc_color": "#FF00FF", "lc_shape": "roundrectangle", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU2Hr1G030680.4", "name": "HORVU2Hr1G030680.4", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 899999, "gene_name": "HORVU2Hr1G030680.4", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/899999", "color": "#CCC", "shape": "ellipse", "description": "bifunctional dihydropterin diphosphokinase and dihydropteroate synthase", "best_name": "HORVU2Hr1G030680.4", "tokens": null, "interpro": ["Pterin-binding_dom", "Hppk"], "family_name": "OG_42_0005301", "family_id": 965110, "family_url": "/family/view/965110", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#993399", "family_shape": "ellipse", "lc_label": "Hppk;OG_42_0005301;Pterin-binding_dom", "lc_color": "#7FFFD4", "lc_shape": "roundrectangle", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU2Hr1G084210.1", "name": "HORVU2Hr1G084210.1", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 902398, "gene_name": "HORVU2Hr1G084210.1", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/902398", "color": "#CCC", "shape": "ellipse", "description": "Unknown function", "best_name": "HORVU2Hr1G084210.1", "tokens": null, "interpro": ["LRR_N_plant-typ", "Leu-rich_rpt"], "family_name": "OG_42_0004896", "family_id": 964705, "family_url": "/family/view/964705", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#FFFF00", "family_shape": "ellipse", "lc_label": "OG_42_0004896;OG_42_0000089;Prot_kinase_dom;OG_42_0000007;LRR_N_plant-typ;Leu-rich_rpt", "lc_color": "#FFFF00", "lc_shape": "ellipse", "species_color": 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"gene_name": "HORVU5Hr1G033060.1", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/916476", "color": "#CCC", "shape": "ellipse", "description": "thioredoxin *(TRX-M)", "best_name": "HORVU5Hr1G033060.1", "tokens": null, "interpro": ["Thioredoxin_domain"], "family_name": "OG_42_0000653", "family_id": 960462, "family_url": "/family/view/960462", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#FFFF00", "family_shape": "rectangle", "lc_label": "Thioredoxin_domain;OG_42_0000653", "lc_color": "#D2691E", "lc_shape": "rectangle", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU1Hr1G062270.1", "name": "HORVU1Hr1G062270.1", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 896558, "gene_name": "HORVU1Hr1G062270.1", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/896558", "color": "#CCC", "shape": "ellipse", "description": "Kinesin-14-type motor protein", "best_name": "HORVU1Hr1G062270.1", "tokens": null, "interpro": ["Kinesin_motor_dom"], "family_name": "OG_42_0000091", "family_id": 959900, "family_url": "/family/view/959900", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#00BFFF", "family_shape": "hexagon", "lc_label": "OG_42_0000091;Kinesin_motor_dom", "lc_color": "#FFE4C4", "lc_shape": "triangle", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU3Hr1G003450.1", "name": "HORVU3Hr1G003450.1", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 905048, "gene_name": "HORVU3Hr1G003450.1", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/905048", "color": "#CCC", "shape": "ellipse", "description": "Unknown function", "best_name": "HORVU3Hr1G003450.1", "tokens": null, "family_name": "OG_42_0002993", "family_id": 962802, "family_url": "/family/view/962802", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#993399", "family_shape": "octagon", "lc_label": "OG_42_0002993", "lc_color": "#D2691E", "lc_shape": "hexagon", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU1Hr1G008250.12", "name": "HORVU1Hr1G008250.12", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 894123, "gene_name": "HORVU1Hr1G008250.12", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/894123", "color": "#CCC", "shape": "ellipse", "description": "beta-N-acetylhexosaminidase *(HEXO) & EC_3.2 glycosylase", "best_name": "HORVU1Hr1G008250.12", "tokens": null, "interpro": ["HEX_eukaryotic_N", "Glyco_hydro_20_cat"], "family_name": "OG_42_0002329", "family_id": 962138, "family_url": "/family/view/962138", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#008000", "family_shape": "rectangle", "lc_label": "HEX_eukaryotic_N;OG_42_0002329;Glyco_hydro_20_cat", "lc_color": "#993399", "lc_shape": "rectangle", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU7Hr1G100800.2", "name": "HORVU7Hr1G100800.2", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 930242, "gene_name": "HORVU7Hr1G100800.2", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/930242", "color": "#CCC", "shape": "ellipse", "description": "histone demethylase *(JMJD6)", "best_name": "HORVU7Hr1G100800.2", "tokens": null, "interpro": ["F-box_dom"], "family_name": "OG_42_0006733", "family_id": 966542, "family_url": "/family/view/966542", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#FF00FF", "family_shape": "hexagon", "lc_label": "OG_42_0006733;F-box_dom", "lc_color": "#FF3300", "lc_shape": "ellipse", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU5Hr1G035610.4", "name": "HORVU5Hr1G035610.4", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 916556, "gene_name": "HORVU5Hr1G035610.4", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/916556", "color": "#CCC", "shape": "ellipse", "description": "AGC-VIII protein kinase & EC_2.7 transferase transferring phosphorus-containing group", "best_name": "HORVU5Hr1G035610.4", "tokens": null, "interpro": ["Prot_kinase_dom", "Prot_kinase_dom"], "family_name": "OG_42_0000089", "family_id": 959898, "family_url": "/family/view/959898", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#A9A9A9", "family_shape": "triangle", "lc_label": "OG_42_0004896;OG_42_0000089;Prot_kinase_dom;OG_42_0000007;LRR_N_plant-typ;Leu-rich_rpt", "lc_color": "#FFFF00", "lc_shape": "ellipse", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU2Hr1G032170.6", "name": "HORVU2Hr1G032170.6", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 900073, "gene_name": "HORVU2Hr1G032170.6", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/900073", "color": "#CCC", "shape": "ellipse", "description": "histone chaperone *(ANP32)", "best_name": "HORVU2Hr1G032170.6", "tokens": null, "family_name": "OG_42_0003892", "family_id": 963701, "family_url": "/family/view/963701", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#00BFFF", "family_shape": "ellipse", "lc_label": "OG_42_0003892", "lc_color": "#FF00FF", "lc_shape": "triangle", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU7Hr1G099910.4", "name": "HORVU7Hr1G099910.4", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 930192, "gene_name": "HORVU7Hr1G099910.4", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/930192", "color": "#CCC", "shape": "ellipse", "description": "Unknown function", "best_name": "HORVU7Hr1G099910.4", "tokens": null, "interpro": ["Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat"], "family_name": "OG_42_0001457", "family_id": 961266, "family_url": "/family/view/961266", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#7FFFD4", "family_shape": "rectangle", "lc_label": "OG_42_0001457;OG_42_0010112;OG_42_0009642;Pentatricopeptide_repeat", "lc_color": "#FFE4C4", "lc_shape": "ellipse", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU7Hr1G031990.2", "name": "HORVU7Hr1G031990.2", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 927073, "gene_name": "HORVU7Hr1G031990.2", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/927073", "color": "#CCC", "shape": "ellipse", "description": "Unknown function", "best_name": "HORVU7Hr1G031990.2", "tokens": null, "family_name": "OG_42_0006195", "family_id": 966004, "family_url": "/family/view/966004", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#D2691E", "family_shape": "triangle", "lc_label": "OG_42_0006195", "lc_color": "#00BFFF", "lc_shape": "triangle", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU6Hr1G051560.2", "name": "HORVU6Hr1G051560.2", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 923440, "gene_name": "HORVU6Hr1G051560.2", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/923440", "color": "#CCC", "shape": "ellipse", "description": "bifunctional GTP cyclohydrolase II *(RibA) and DHBP synthase *(RibB) & EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond", "best_name": "HORVU6Hr1G051560.2", "tokens": null, "interpro": ["GTP_cyclohydro_II", "DHBP_synthase_RibB"], "family_name": "OG_42_0001532", "family_id": 961341, "family_url": "/family/view/961341", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#FFD700", "family_shape": "ellipse", "lc_label": "GTP_cyclohydro_II;DHBP_synthase_RibB;OG_42_0001532", "lc_color": "#008000", "lc_shape": "triangle", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU6Hr1G011120.1", "name": "HORVU6Hr1G011120.1", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 921681, "gene_name": "HORVU6Hr1G011120.1", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/921681", "color": "#CCC", "shape": "ellipse", "description": "Unknown function", "best_name": "HORVU6Hr1G011120.1", "tokens": null, "interpro": ["Glutathione_S-Trfase_N"], "family_name": "OG_42_0004251", "family_id": 964060, "family_url": "/family/view/964060", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#A9A9A9", "family_shape": "hexagon", "lc_label": "OG_42_0004251;Glutathione_S-Trfase_N", "lc_color": "#7FFFD4", "lc_shape": "hexagon", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU0Hr1G020300.5", "name": "HORVU0Hr1G020300.5", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 892632, "gene_name": "HORVU0Hr1G020300.5", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/892632", "color": "#CCC", "shape": "ellipse", "description": "Unknown function", "best_name": "HORVU0Hr1G020300.5", "tokens": null, "interpro": ["Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat", "Pentatricopeptide_repeat"], "family_name": "OG_42_0009642", "family_id": 969451, "family_url": "/family/view/969451", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#008000", "family_shape": "hexagon", "lc_label": "OG_42_0001457;OG_42_0010112;OG_42_0009642;Pentatricopeptide_repeat", "lc_color": "#FFE4C4", "lc_shape": "ellipse", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU6Hr1G072310.1", "name": "HORVU6Hr1G072310.1", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 924460, "gene_name": "HORVU6Hr1G072310.1", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/924460", "color": "#CCC", "shape": "ellipse", "description": "Unknown function", "best_name": "HORVU6Hr1G072310.1", "tokens": null, "interpro": ["Tic20"], "family_name": "OG_42_0004486", "family_id": 964295, "family_url": "/family/view/964295", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#FFFF00", "family_shape": "roundrectangle", "lc_label": "OG_42_0004486;Tic20", "lc_color": "#A9A9A9", "lc_shape": "roundrectangle", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU4Hr1G028840.1", "name": "HORVU4Hr1G028840.1", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 912129, "gene_name": "HORVU4Hr1G028840.1", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/912129", "color": "#CCC", "shape": "ellipse", "description": "Unknown function", "best_name": "HORVU4Hr1G028840.1", "tokens": null, "family_name": "OG_42_0030766", "family_id": 990575, "family_url": "/family/view/990575", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#7FFFD4", "family_shape": "triangle", "lc_label": "OG_42_0030766", "lc_color": "#D2691E", "lc_shape": "triangle", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU2Hr1G081790.4", "name": "HORVU2Hr1G081790.4", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 902258, "gene_name": "HORVU2Hr1G081790.4", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/902258", "color": "#CCC", "shape": "ellipse", "description": "amino acid transporter *(AAP)", "best_name": "HORVU2Hr1G081790.4", "tokens": null, "interpro": ["AA_transpt_TM"], "family_name": "OG_42_0000170", "family_id": 959979, "family_url": "/family/view/959979", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#FF3300", "family_shape": "ellipse", "lc_label": "AA_transpt_TM;OG_42_0000170", "lc_color": "#FFD700", "lc_shape": "roundrectangle", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU2Hr1G019120.5", "name": "HORVU2Hr1G019120.5", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 899357, "gene_name": "HORVU2Hr1G019120.5", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/899357", "color": "#CCC", "shape": "ellipse", "description": "Unknown function", "best_name": "HORVU2Hr1G019120.5", "tokens": null, "family_name": "OG_42_0006633", "family_id": 966442, "family_url": "/family/view/966442", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#ADFF2F", "family_shape": "roundrectangle", "lc_label": "OG_42_0006633", "lc_color": "#FF00FF", "lc_shape": "ellipse", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "HORVU5Hr1G114020.4", "name": "HORVU5Hr1G114020.4", "species_id": 24, "species_name": "Hordeum vulgare", "gene_id": 920554, "gene_name": "HORVU5Hr1G114020.4", "network_method_id": 20, "node_type": "target", "gene_link": "/sequence/view/920554", "color": "#CCC", "shape": "ellipse", "description": "hexose transporter *(VGT)", "best_name": "HORVU5Hr1G114020.4", "tokens": null, "interpro": ["MFS_sugar_transport-like"], "family_name": "OG_42_0003128", "family_id": 962937, "family_url": "/family/view/962937", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#ADFF2F", "family_shape": "ellipse", "lc_label": "OG_42_0003128;MFS_sugar_transport-like", "lc_color": "#FFFF00", "lc_shape": "roundrectangle", "species_color": "#468B56", "tag": "hideable"}}, {"data": {"id": "PSME_00023782-RA", "name": "PSME_00023782-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 551135, "gene_name": "PSME_00023782-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/551135", "color": "#CCC", "shape": "ellipse", "description": "(at5g52390 : 124.0) PAR1 protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: PAR1 (InterPro:IPR009489); BEST Arabidopsis thaliana protein match is: PAR1 protein (TAIR:AT3G54040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 248.0) & (original description: no original description)", "best_name": "PSME_00023782-RA", "tokens": null, "interpro": ["PAR1"], "family_name": "OG_42_0000813", "family_id": 960622, "family_url": "/family/view/960622", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#FFE4C4", "family_shape": "ellipse", "lc_label": "PAR1;OG_42_0000813", "lc_color": "#ADFF2F", "lc_shape": "rectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00040934-RA", "name": "PSME_00040934-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 561803, "gene_name": "PSME_00040934-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/561803", "color": "#CCC", "shape": "ellipse", "description": "(at5g64750 : 100.0) Encodes a putative transcription factor containing an AP2 domain. Is a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. Expressed in response to ABA, osmotic stress, sugar stress and drought. Mutants are hypersensitive to these stresses. May be involved in regulation of ABA mediated stress response.; ABA REPRESSOR1 (ABR1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G61890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 200.0) & (original description: no original description)", "best_name": "PSME_00040934-RA", "tokens": null, "interpro": ["AP2/ERF_dom"], "family_name": "OG_42_0000000", "family_id": 959809, "family_url": "/family/view/959809", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#7FFFD4", "family_shape": "hexagon", "lc_label": "AP2/ERF_dom;OG_42_0000000", "lc_color": "#FF3300", "lc_shape": "hexagon", "species_color": "#811DCD", "tag": "always_show"}}, {"data": {"id": "PSME_00010301-RA", "name": "PSME_00010301-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 542381, "gene_name": "PSME_00010301-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/542381", "color": "#CCC", "shape": "ellipse", "description": "(at2g06050 : 290.0) Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence. Shows activity towards 2,4,6-trinitrotoluene.; oxophytodienoate-reductase 3 (OPR3); FUNCTIONS IN: 12-oxophytodienoate reductase activity; INVOLVED IN: response to jasmonic acid stimulus, response to fungus, jasmonic acid biosynthetic process, response to wounding, response to ozone; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155), Aldolase-type TIM barrel (InterPro:IPR013785); BEST Arabidopsis thaliana protein match is: 12-oxophytodienoate reductase 2 (TAIR:AT1G76690.1); Has 13056 Blast hits to 13024 proteins in 2039 species: Archae - 127; Bacteria - 9671; Metazoa - 31; Fungi - 870; Plants - 454; Viruses - 0; Other Eukaryotes - 1903 (source: NCBI BLink). & (reliability: 580.0) & (original description: no original description)", "best_name": "PSME_00010301-RA", "tokens": null, "interpro": ["OxRdtase_FMN_N"], "family_name": "OG_42_0022564", "family_id": 982373, "family_url": "/family/view/982373", "family_clade": "Archaeplastida", "family_clade_color": "#ADFF2F", "family_clade_shape": "roundrectangle", "family_clade_count": 22, "family_color": "#D2691E", "family_shape": "rectangle", "lc_label": "OG_42_0000346;OG_42_0022182;OG_42_0022564;OxRdtase_FMN_N;OG_42_0126179", "lc_color": "#008000", "lc_shape": "rectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00015395-RA", "name": "PSME_00015395-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 545742, "gene_name": "PSME_00015395-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/545742", "color": "#CCC", "shape": "ellipse", "description": "(q76cu2|pdr1_tobac : 1904.0) Pleiotropic drug resistance protein 1 (NtPDR1) - Nicotiana tabacum (Common tobacco) & (at1g15520 : 1853.0) ABC transporter family involved in ABA transport and resistance to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers, stomata and roots.; pleiotropic drug resistance 12 (PDR12); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 11 (TAIR:AT1G66950.1); Has 377983 Blast hits to 279992 proteins in 3946 species: Archae - 7615; Bacteria - 304057; Metazoa - 8776; Fungi - 6428; Plants - 5794; Viruses - 2; Other Eukaryotes - 45311 (source: NCBI BLink). & (reliability: 3706.0) & (original description: no original description)", "best_name": "PSME_00015395-RA", "tokens": null, "interpro": ["ABC_trans_N", "ABC_transporter-like", "ABC_2_trans", "ABC_2_trans", "ABC_transporter-like", "PDR_assoc"], "family_name": "OG_42_0000055", "family_id": 959864, "family_url": "/family/view/959864", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#FF00FF", "family_shape": "rectangle", "lc_label": "PDR_assoc;ABC_trans_N;ABC_2_trans;ABC_transporter-like;OG_42_0000055", "lc_color": "#D2691E", "lc_shape": "ellipse", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00054473-RA", "name": "PSME_00054473-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 569879, "gene_name": "PSME_00054473-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/569879", "color": "#CCC", "shape": "ellipse", "description": "(at5g64750 : 103.0) Encodes a putative transcription factor containing an AP2 domain. Is a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. Expressed in response to ABA, osmotic stress, sugar stress and drought. Mutants are hypersensitive to these stresses. May be involved in regulation of ABA mediated stress response.; ABA REPRESSOR1 (ABR1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G61890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q6k7e6|erf1_orysa : 89.7) Ethylene-responsive transcription factor 1 (Ethylene-responsive element-binding factor 1) (EREBP-1) (OsEREBP1) - Oryza sativa (Rice) & (reliability: 191.0) & (original description: no original description)", "best_name": "PSME_00054473-RA", "tokens": null, "interpro": ["AP2/ERF_dom"], "family_name": "OG_42_0000000", "family_id": 959809, "family_url": "/family/view/959809", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#7FFFD4", "family_shape": "hexagon", "lc_label": "AP2/ERF_dom;OG_42_0000000", "lc_color": "#FF3300", "lc_shape": "hexagon", "species_color": "#811DCD", "tag": "always_show"}}, {"data": {"id": "PSME_00033197-RA", "name": "PSME_00033197-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 556972, "gene_name": "PSME_00033197-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/556972", "color": "#CCC", "shape": "ellipse", "description": "(at3g11180 : 346.0) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G05600.1). & (p51091|ldox_maldo : 208.0) Leucoanthocyanidin dioxygenase (EC 1.14.11.19) (LDOX) (Leucocyanidin oxygenase) (Leucoanthocyanidin hydroxylase) (Anthocyanidin synthase) - Malus domestica (Apple) (Malus sylvestris) & (reliability: 692.0) & (original description: no original description)", "best_name": "PSME_00033197-RA", "tokens": null, "interpro": ["Oxoglu/Fe-dep_dioxygenase", "DIOX_N"], "family_name": "OG_42_0001008", "family_id": 960817, "family_url": "/family/view/960817", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#7FFFD4", "family_shape": "roundrectangle", "lc_label": "OG_42_0001008;Oxoglu/Fe-dep_dioxygenase;OG_42_0003104;DIOX_N", "lc_color": "#FFD700", "lc_shape": "rectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00047222-RA", "name": "PSME_00047222-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 565693, "gene_name": "PSME_00047222-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/565693", "color": "#CCC", "shape": "ellipse", "description": "(at4g04450 : 178.0) member of WRKY Transcription Factor; Group II-b; WRKY42; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 31 (TAIR:AT4G22070.1); Has 3599 Blast hits to 3152 proteins in 220 species: Archae - 0; Bacteria - 6; Metazoa - 41; Fungi - 2; Plants - 3474; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). & (reliability: 356.0) & (original description: no original description)", "best_name": "PSME_00047222-RA", "tokens": null, "interpro": ["WRKY_dom"], "family_name": "OG_42_0000005", "family_id": 959814, "family_url": "/family/view/959814", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#ADFF2F", "family_shape": "hexagon", "lc_label": "OG_42_0000005;WRKY_dom", "lc_color": "#FFE4C4", "lc_shape": "hexagon", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00053316-RA", "name": "PSME_00053316-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 569278, "gene_name": "PSME_00053316-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/569278", "color": "#CCC", "shape": "ellipse", "description": "(at2g24130 : 617.0) Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G47570.1); Has 211952 Blast hits to 136025 proteins in 5092 species: Archae - 179; Bacteria - 23123; Metazoa - 70875; Fungi - 10647; Plants - 82602; Viruses - 325; Other Eukaryotes - 24201 (source: NCBI BLink). & (p93194|rpk1_iponi : 463.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 1234.0) & (original description: no original description)", "best_name": "PSME_00053316-RA", "tokens": null, "interpro": ["Leu-rich_rpt", "Leu-rich_rpt", "LRR_N_plant-typ", "Prot_kinase_dom"], "family_name": "OG_42_0000007", "family_id": 959816, "family_url": "/family/view/959816", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#7FFFD4", "family_shape": "ellipse", "lc_label": "OG_42_0004896;OG_42_0000089;Prot_kinase_dom;OG_42_0000007;LRR_N_plant-typ;Leu-rich_rpt", "lc_color": "#FFFF00", "lc_shape": "ellipse", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00018647-RA", "name": "PSME_00018647-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 547860, "gene_name": "PSME_00018647-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/547860", "color": "#CCC", "shape": "ellipse", "description": "(at2g17420 : 468.0) NADPH-dependent thioredoxin reductase, major cytosolic isoform; NADPH-dependent thioredoxin reductase A (NTRA); FUNCTIONS IN: thioredoxin-disulfide reductase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, mitochondrial matrix; EXPRESSED IN: male gametophyte, guard cell, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II, active site (InterPro:IPR008255), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), Thioredoxin reductase (InterPro:IPR005982); BEST Arabidopsis thaliana protein match is: NADPH-dependent thioredoxin reductase B (TAIR:AT4G35460.1); Has 20135 Blast hits to 20133 proteins in 2901 species: Archae - 588; Bacteria - 13597; Metazoa - 140; Fungi - 273; Plants - 163; Viruses - 0; Other Eukaryotes - 5374 (source: NCBI BLink). & (reliability: 936.0) & (original description: no original description)", "best_name": "PSME_00018647-RA", "tokens": null, "interpro": ["FAD/NAD-binding_dom"], "family_name": "OG_42_0001192", "family_id": 961001, "family_url": "/family/view/961001", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#ADFF2F", "family_shape": "triangle", "lc_label": "OG_42_0001192;FAD/NAD-binding_dom", "lc_color": "#993399", "lc_shape": "hexagon", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00013075-RA", "name": "PSME_00013075-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 544216, "gene_name": "PSME_00013075-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/544216", "color": "#CCC", "shape": "ellipse", "description": "(at2g17420 : 476.0) NADPH-dependent thioredoxin reductase, major cytosolic isoform; NADPH-dependent thioredoxin reductase A (NTRA); FUNCTIONS IN: thioredoxin-disulfide reductase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, mitochondrial matrix; EXPRESSED IN: male gametophyte, guard cell, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II, active site (InterPro:IPR008255), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), Thioredoxin reductase (InterPro:IPR005982); BEST Arabidopsis thaliana protein match is: NADPH-dependent thioredoxin reductase B (TAIR:AT4G35460.1); Has 20135 Blast hits to 20133 proteins in 2901 species: Archae - 588; Bacteria - 13597; Metazoa - 140; Fungi - 273; Plants - 163; Viruses - 0; Other Eukaryotes - 5374 (source: NCBI BLink). & (reliability: 952.0) & (original description: no original description)", "best_name": "PSME_00013075-RA", "tokens": null, "interpro": ["FAD/NAD-binding_dom", "FAD/NAD-binding_dom"], "family_name": "OG_42_0001192", "family_id": 961001, "family_url": "/family/view/961001", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#ADFF2F", "family_shape": "triangle", "lc_label": "OG_42_0001192;FAD/NAD-binding_dom", "lc_color": "#993399", "lc_shape": "hexagon", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00036436-RA", "name": "PSME_00036436-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 559002, "gene_name": "PSME_00036436-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/559002", "color": "#CCC", "shape": "ellipse", "description": "(at3g54420 : 249.0) encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.; homolog of carrot EP3-3 chitinase (EP3); FUNCTIONS IN: chitinase activity; INVOLVED IN: somatic embryogenesis, plant-type hypersensitive response; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2660 Blast hits to 2432 proteins in 504 species: Archae - 0; Bacteria - 547; Metazoa - 34; Fungi - 178; Plants - 1776; Viruses - 22; Other Eukaryotes - 103 (source: NCBI BLink). & (p29022|chia_maize : 245.0) Endochitinase A precursor (EC 3.2.1.14) (Seed chitinase A) - Zea mays (Maize) & (reliability: 498.0) & (original description: no original description)", "best_name": "PSME_00036436-RA", "tokens": null, "interpro": ["Glyco_hydro_19_cat"], "family_name": "OG_42_0000525", "family_id": 960334, "family_url": "/family/view/960334", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#993399", "family_shape": "roundrectangle", "lc_label": "OG_42_0000525;Glyco_hydro_19_cat", "lc_color": "#00BFFF", "lc_shape": "ellipse", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00012317-RA", "name": "PSME_00012317-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 543734, "gene_name": "PSME_00012317-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/543734", "color": "#CCC", "shape": "ellipse", "description": "(q52qh4|nac68_orysa : 117.0) NAC domain-containing protein 68 (ONAC068) - Oryza sativa (Rice) & (at1g77450 : 115.0) NAC domain containing protein 32 (NAC032); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT1G01720.1); Has 3015 Blast hits to 3009 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3015; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description)", "best_name": "PSME_00012317-RA", "tokens": null, "interpro": ["NAC-dom"], "family_name": "OG_42_0123198", "family_id": 1083007, "family_url": "/family/view/1083007", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#FF3300", "family_shape": "octagon", "lc_label": "OG_42_0123198;NAC-dom", "lc_color": "#993399", "lc_shape": "roundrectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00047559-RA", "name": "PSME_00047559-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 565911, "gene_name": "PSME_00047559-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/565911", "color": "#CCC", "shape": "ellipse", "description": "(p22195|per1_arahy : 427.0) Cationic peroxidase 1 precursor (EC 1.11.1.7) (PNPC1) - Arachis hypogaea (Peanut) & (at5g05340 : 408.0) Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G58400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 816.0) & (original description: no original description)", "best_name": "PSME_00047559-RA", "tokens": null, "interpro": ["Haem_peroxidase_pln/fun/bac"], "family_name": "OG_42_0000036", "family_id": 959845, "family_url": "/family/view/959845", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#ADFF2F", "family_shape": "rectangle", "lc_label": "Haem_peroxidase_pln/fun/bac;OG_42_0000036", "lc_color": "#FFE4C4", "lc_shape": "roundrectangle", "species_color": "#811DCD", "tag": "always_show"}}, {"data": {"id": "PSME_00010378-RA", "name": "PSME_00010378-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 542427, "gene_name": "PSME_00010378-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/542427", "color": "#CCC", "shape": "ellipse", "description": " no hits & (original description: no original description)", "best_name": "PSME_00010378-RA", "tokens": null, "interpro": ["LOB"], "family_name": "OG_42_0000426", "family_id": 960235, "family_url": "/family/view/960235", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#FFE4C4", "family_shape": "hexagon", "lc_label": "LOB;OG_42_0000073;OG_42_0000426", "lc_color": "#FFD700", "lc_shape": "ellipse", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00017638-RA", "name": "PSME_00017638-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 547206, "gene_name": "PSME_00017638-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/547206", "color": "#CCC", "shape": "ellipse", "description": "(at4g26200 : 558.0) Member of a family of proteins in Arabidopsis that encode 1-Amino-cyclopropane-1-carboxylate synthase, an enzyme involved in ethylene biosynthesis. Not expressed in response to IAA.; 1-amino-cyclopropane-1-carboxylate synthase 7 (ACS7); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: 1-amino-cyclopropane-1-carboxylate synthase 8 (TAIR:AT4G37770.1); Has 33519 Blast hits to 33516 proteins in 2975 species: Archae - 937; Bacteria - 23616; Metazoa - 672; Fungi - 820; Plants - 1333; Viruses - 0; Other Eukaryotes - 6141 (source: NCBI BLink). & (q00257|1a12_cucma : 558.0) 1-aminocyclopropane-1-carboxylate synthase CMA101 (EC 4.4.1.14) (ACC synthase) (S-adenosyl-L-methionine methylthioadenosine-lyase) - Cucurbita maxima (Pumpkin) (Winter squash) & (reliability: 1116.0) & (original description: no original description)", "best_name": "PSME_00017638-RA", "tokens": null, "interpro": ["Aminotransferase_I/II"], "family_name": "OG_42_0000419", "family_id": 960228, "family_url": "/family/view/960228", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#00BFFF", "family_shape": "roundrectangle", "lc_label": "OG_42_0000419;Aminotransferase_I/II", "lc_color": "#008000", "lc_shape": "ellipse", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00020410-RA", "name": "PSME_00020410-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 548997, "gene_name": "PSME_00020410-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/548997", "color": "#CCC", "shape": "ellipse", "description": "(at2g06050 : 260.0) Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence. Shows activity towards 2,4,6-trinitrotoluene.; oxophytodienoate-reductase 3 (OPR3); FUNCTIONS IN: 12-oxophytodienoate reductase activity; INVOLVED IN: response to jasmonic acid stimulus, response to fungus, jasmonic acid biosynthetic process, response to wounding, response to ozone; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155), Aldolase-type TIM barrel (InterPro:IPR013785); BEST Arabidopsis thaliana protein match is: 12-oxophytodienoate reductase 2 (TAIR:AT1G76690.1); Has 13056 Blast hits to 13024 proteins in 2039 species: Archae - 127; Bacteria - 9671; Metazoa - 31; Fungi - 870; Plants - 454; Viruses - 0; Other Eukaryotes - 1903 (source: NCBI BLink). & (reliability: 520.0) & (original description: no original description)", "best_name": "PSME_00020410-RA", "tokens": null, "interpro": ["OxRdtase_FMN_N"], "family_name": "OG_42_0022182", "family_id": 981991, "family_url": "/family/view/981991", "family_clade": "Archaeplastida", "family_clade_color": "#ADFF2F", "family_clade_shape": "roundrectangle", "family_clade_count": 22, "family_color": "#FFD700", "family_shape": "roundrectangle", "lc_label": "OG_42_0000346;OG_42_0022182;OG_42_0022564;OxRdtase_FMN_N;OG_42_0126179", "lc_color": "#008000", "lc_shape": "rectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00046052-RA", "name": "PSME_00046052-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 564989, "gene_name": "PSME_00046052-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/564989", "color": "#CCC", "shape": "ellipse", "description": "(at1g19210 : 89.0) encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.; Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, C globular stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G74930.1); Has 5600 Blast hits to 5488 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5592; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). & (reliability: 178.0) & (original description: no original description)", "best_name": "PSME_00046052-RA", "tokens": null, "interpro": ["AP2/ERF_dom"], "family_name": "OG_42_0000000", "family_id": 959809, "family_url": "/family/view/959809", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#7FFFD4", "family_shape": "hexagon", "lc_label": "AP2/ERF_dom;OG_42_0000000", "lc_color": "#FF3300", "lc_shape": "hexagon", "species_color": "#811DCD", "tag": "always_show"}}, {"data": {"id": "PSME_00029581-RA", "name": "PSME_00029581-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 554662, "gene_name": "PSME_00029581-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/554662", "color": "#CCC", "shape": "ellipse", "description": "(at1g05675 : 356.0) UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: Uridine diphosphate glycosyltransferase 74E2 (TAIR:AT1G05680.1). & (q41819|iaag_maize : 310.0) Indole-3-acetate beta-glucosyltransferase (EC 2.4.1.121) (IAA-Glu synthetase) ((Uridine 5'-diphosphate-glucose:indol-3-ylacetyl)-beta-D-glucosyl transferase) - Zea mays (Maize) & (reliability: 660.0) & (original description: no original description)", "best_name": "PSME_00029581-RA", "tokens": null, "interpro": ["UDP_glucos_trans"], "family_name": "OG_42_0000074", "family_id": 959883, "family_url": "/family/view/959883", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#008000", "family_shape": "triangle", "lc_label": "UDP_glucos_trans;OG_42_0000074", "lc_color": "#FF3300", "lc_shape": "triangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00017013-RA", "name": "PSME_00017013-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 546804, "gene_name": "PSME_00017013-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/546804", "color": "#CCC", "shape": "ellipse", "description": "(at1g76690 : 328.0) Encodes one of the closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer. Shows activity towards 2,4,6-trinitrotoluene. Expressed predominately in root. Predicted to be a cytosolic protein.; 12-oxophytodienoate reductase 2 (OPR2); CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155); BEST Arabidopsis thaliana protein match is: 12-oxophytodienoate reductase 1 (TAIR:AT1G76680.1); Has 13197 Blast hits to 13176 proteins in 2056 species: Archae - 127; Bacteria - 9811; Metazoa - 29; Fungi - 865; Plants - 452; Viruses - 0; Other Eukaryotes - 1913 (source: NCBI BLink). & (reliability: 656.0) & (original description: no original description)", "best_name": "PSME_00017013-RA", "tokens": null, "interpro": ["OxRdtase_FMN_N"], "family_name": "OG_42_0000346", "family_id": 960155, "family_url": "/family/view/960155", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#A9A9A9", "family_shape": "roundrectangle", "lc_label": "OG_42_0000346;OG_42_0022182;OG_42_0022564;OxRdtase_FMN_N;OG_42_0126179", "lc_color": "#008000", "lc_shape": "rectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00009389-RA", "name": "PSME_00009389-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 541755, "gene_name": "PSME_00009389-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/541755", "color": "#CCC", "shape": "ellipse", "description": "(at2g28500 : 147.0) LOB domain-containing protein 11 (LBD11); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 1 (TAIR:AT1G07900.1); Has 1191 Blast hits to 1170 proteins in 85 species: Archae - 8; Bacteria - 66; Metazoa - 21; Fungi - 2; Plants - 1049; Viruses - 10; Other Eukaryotes - 35 (source: NCBI BLink). & (reliability: 294.0) & (original description: no original description)", "best_name": "PSME_00009389-RA", "tokens": null, "interpro": ["LOB"], "family_name": "OG_42_0000073", "family_id": 959882, "family_url": "/family/view/959882", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#D2691E", "family_shape": "roundrectangle", "lc_label": "LOB;OG_42_0000073;OG_42_0000426", "lc_color": "#FFD700", "lc_shape": "ellipse", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00029162-RA", "name": "PSME_00029162-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 554410, "gene_name": "PSME_00029162-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/554410", "color": "#CCC", "shape": "ellipse", "description": "(at1g76690 : 543.0) Encodes one of the closely related 12-oxophytodienoic acid reductases. This enzyme is not expected to participate in jasmonic acid biosynthesis because during in vitro assays, it shows very little activity with the naturally occurring OPDA isomer. Shows activity towards 2,4,6-trinitrotoluene. Expressed predominately in root. Predicted to be a cytosolic protein.; 12-oxophytodienoate reductase 2 (OPR2); CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), NADH:flavin oxidoreductase/NADH oxidase, N-terminal (InterPro:IPR001155); BEST Arabidopsis thaliana protein match is: 12-oxophytodienoate reductase 1 (TAIR:AT1G76680.1); Has 13197 Blast hits to 13176 proteins in 2056 species: Archae - 127; Bacteria - 9811; Metazoa - 29; Fungi - 865; Plants - 452; Viruses - 0; Other Eukaryotes - 1913 (source: NCBI BLink). & (reliability: 1086.0) & (original description: no original description)", "best_name": "PSME_00029162-RA", "tokens": null, "interpro": ["OxRdtase_FMN_N"], "family_name": "OG_42_0126179", "family_id": 1085988, "family_url": "/family/view/1085988", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#008000", "family_shape": "ellipse", "lc_label": "OG_42_0000346;OG_42_0022182;OG_42_0022564;OxRdtase_FMN_N;OG_42_0126179", "lc_color": "#008000", "lc_shape": "rectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00050580-RA", "name": "PSME_00050580-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 567825, "gene_name": "PSME_00050580-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/567825", "color": "#CCC", "shape": "ellipse", "description": "(at3g19010 : 171.0) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: flavonol synthase activity, oxidoreductase activity; INVOLVED IN: flavonoid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G19000.1). & (q06942|fl3h_maldo : 134.0) Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9) (Flavonone-3-hydroxylase) (F3H) (FHT) - Malus domestica (Apple) (Malus sylvestris) & (reliability: 342.0) & (original description: no original description)", "best_name": "PSME_00050580-RA", "tokens": null, "interpro": ["Oxoglu/Fe-dep_dioxygenase", "DIOX_N"], "family_name": "OG_42_0003104", "family_id": 962913, "family_url": "/family/view/962913", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#A9A9A9", "family_shape": "rectangle", "lc_label": "OG_42_0001008;Oxoglu/Fe-dep_dioxygenase;OG_42_0003104;DIOX_N", "lc_color": "#FFD700", "lc_shape": "rectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00056181-RA", "name": "PSME_00056181-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 570970, "gene_name": "PSME_00056181-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/570970", "color": "#CCC", "shape": "ellipse", "description": "(at3g14440 : 662.0) Encodes 9-

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