{"nodes": [{"data": {"id": "PSME_00017439-RA", "name": "PSME_00017439-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 547068, "gene_name": "PSME_00017439-RA", "network_method_id": 15, "node_type": "query", "gene_link": "/sequence/view/547068", "color": "#CCC", "shape": "ellipse", "description": "(at3g13540 : 222.0) Encodes a member of the MYB family of transcriptional regulators. MYB5 act as a negative regulator of trichome branching and play a role in the correct formation of the seed coat and possibly the formation the underlying endosperm layers. Loss of function mutations have defects in seed coat mucilage and columella cells as well as trichome defects (smaller and reduced number of branches).; myb domain protein 5 (MYB5); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 17 (TAIR:AT3G61250.1); Has 8972 Blast hits to 8275 proteins in 512 species: Archae - 0; Bacteria - 0; Metazoa - 834; Fungi - 461; Plants - 5987; Viruses - 3; Other Eukaryotes - 1687 (source: NCBI BLink). & (p20026|myb1_horvu : 204.0) Myb-related protein Hv1 - Hordeum vulgare (Barley) & (reliability: 444.0) & (original description: no original description)", "best_name": "PSME_00017439-RA", "tokens": null, "interpro": ["SANT/Myb", "SANT/Myb"], "family_name": "OG_42_0000002", "family_id": 959811, "family_url": "/family/view/959811", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#69F", "family_shape": "triangle", "lc_label": "OG_42_0000002;SANT/Myb", "lc_color": "#FFFF00", "lc_shape": "ellipse", "species_color": "#811DCD", "tag": "always_show"}}, {"data": {"id": "LOC_Os01g49160", "name": "LOC_Os01g49160", "species_id": 8, "species_name": "Oryza sativa", "gene_id": 194903, "gene_name": "LOC_Os01g49160", "network_method_id": 7, "node_type": "query", "gene_link": "/sequence/view/194903", "color": "#CCC", "shape": "ellipse", "description": "MYB family transcription factor, putative, expressed", "best_name": "LOC_Os01g49160", "tokens": null, "interpro": ["SANT/Myb", "SANT/Myb"], "family_name": "OG_42_0000002", "family_id": 959811, "family_url": "/family/view/959811", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#69F", "family_shape": "triangle", "lc_label": "OG_42_0000002;SANT/Myb", "lc_color": "#FFFF00", "lc_shape": "ellipse", "species_color": "#CD1B50", "tag": "always_show"}}, {"data": {"id": "PSME_00007298-RA", "name": "PSME_00007298-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 540369, "gene_name": "PSME_00007298-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/540369", "color": "#CCC", "shape": "ellipse", "description": "(at4g26200 : 603.0) Member of a family of proteins in Arabidopsis that encode 1-Amino-cyclopropane-1-carboxylate synthase, an enzyme involved in ethylene biosynthesis. Not expressed in response to IAA.; 1-amino-cyclopropane-1-carboxylate synthase 7 (ACS7); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: 1-amino-cyclopropane-1-carboxylate synthase 8 (TAIR:AT4G37770.1); Has 33519 Blast hits to 33516 proteins in 2975 species: Archae - 937; Bacteria - 23616; Metazoa - 672; Fungi - 820; Plants - 1333; Viruses - 0; Other Eukaryotes - 6141 (source: NCBI BLink). & (q00257|1a12_cucma : 571.0) 1-aminocyclopropane-1-carboxylate synthase CMA101 (EC 4.4.1.14) (ACC synthase) (S-adenosyl-L-methionine methylthioadenosine-lyase) - Cucurbita maxima (Pumpkin) (Winter squash) & (reliability: 1206.0) & (original description: no original description)", "best_name": "PSME_00007298-RA", "tokens": null, "interpro": ["Aminotransferase_I/II"], "family_name": "OG_42_0000419", "family_id": 960228, "family_url": "/family/view/960228", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#1D4", "family_shape": "octagon", "lc_label": "OG_42_0000419;Aminotransferase_I/II", "lc_color": "#00BFFF", "lc_shape": "triangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00047977-RA", "name": "PSME_00047977-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 566183, "gene_name": "PSME_00047977-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/566183", "color": "#CCC", "shape": "ellipse", "description": "(at1g52800 : 120.0) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G52790.1); Has 6299 Blast hits to 6226 proteins in 763 species: Archae - 0; Bacteria - 707; Metazoa - 49; Fungi - 497; Plants - 4377; Viruses - 0; Other Eukaryotes - 669 (source: NCBI BLink). & (q07512|fls_pethy : 89.7) Flavonol synthase/flavanone 3-hydroxylase (EC 1.14.11.23) (EC 1.14.11.9) (FLS) - Petunia hybrida (Petunia) & (reliability: 216.0) & (original description: no original description)", "best_name": "PSME_00047977-RA", "tokens": null, "interpro": ["DIOX_N", "Oxoglu/Fe-dep_dioxygenase"], "family_name": "OG_42_0000476", "family_id": 960285, "family_url": "/family/view/960285", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#861", "family_shape": "rhomboid", "lc_label": "Oxoglu/Fe-dep_dioxygenase;DIOX_N;OG_42_0000476;OG_42_0008696", "lc_color": "#A9A9A9", "lc_shape": "hexagon", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00034819-RA", "name": "PSME_00034819-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 558014, "gene_name": "PSME_00034819-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/558014", "color": "#CCC", "shape": "ellipse", "description": "(at5g55090 : 145.0) member of MEKK subfamily; mitogen-activated protein kinase kinase kinase 15 (MAPKKK15); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 16 (TAIR:AT4G26890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 290.0) & (original description: no original description)", "best_name": "PSME_00034819-RA", "tokens": null, "interpro": ["Prot_kinase_dom"], "family_name": "OG_42_0000268", "family_id": 960077, "family_url": "/family/view/960077", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#064", "family_shape": "rhomboid", "lc_label": "EGF_dom;OG_42_0001196;OG_42_0127265;OG_42_0001260;OG_42_0129225;LRR_N_plant-typ;OG_42_0000710;OG_42_0128099;OG_42_0000268;Leu-rich_rpt;OG_42_0000089;OG_42_0007095;OG_42_0010941;OG_42_0125998;Prot_kinase_dom;OG_42_0127611;OG_42_0003768;OG_42_0010399", "lc_color": "#FFE4C4", "lc_shape": "roundrectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00044498-RA", "name": "PSME_00044498-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 564020, "gene_name": "PSME_00044498-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/564020", "color": "#CCC", "shape": "ellipse", "description": " (original description: no original description)", "best_name": "PSME_00044498-RA", "tokens": null, "family_name": "OG_42_0001200", "family_id": 961009, "family_url": "/family/view/961009", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#1CC", "family_shape": "ellipse", "lc_label": "OG_42_0001200;Znf_CCHC", "lc_color": "#FFFF00", "lc_shape": "roundrectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00010693-RA", "name": "PSME_00010693-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 542640, "gene_name": "PSME_00010693-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/542640", "color": "#CCC", "shape": "ellipse", "description": "(at5g19400 : 134.0) Encodes SMG7, a protein that possesses an evolutionarily conserved EST1 domain and exhibits strong homology to human SMG6 (EST1A) and SMG7 (EST1C) proteins. SMG7 plays an evolutionarily conserved role in nonsense-mediated RNA decay (NMD). Required for exit from meiosis. Hypomorphic smg7 alleles render mutant plants sterile by causing an unusual cell-cycle arrest in anaphase II that is characterized by delayed chromosome decondensation and aberrant rearrangement of the meiotic spindle. Disruption of SMG7 causes embryonic lethality.; SMG7; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: meiosis, spindle assembly involved in meiosis, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Telomerase activating protein Est1 (InterPro:IPR019458); BEST Arabidopsis thaliana protein match is: Telomerase activating protein Est1 (TAIR:AT1G28260.2). & (reliability: 268.0) & (original description: no original description)", "best_name": "PSME_00010693-RA", "tokens": null, "interpro": ["EST1"], "family_name": "OG_42_0003131", "family_id": 962940, "family_url": "/family/view/962940", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#976", "family_shape": "hexagon", "lc_label": "OG_42_0003131;EST1", "lc_color": "#FF00FF", "lc_shape": "triangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00048039-RA", "name": "PSME_00048039-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 566209, "gene_name": "PSME_00048039-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/566209", "color": "#CCC", "shape": "ellipse", "description": "(at5g64270 : 294.0) splicing factor, putative; FUNCTIONS IN: binding; INVOLVED IN: mRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Splicing factor 3B subunit 1 (InterPro:IPR015016), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 588.0) & (original description: no original description)", "best_name": "PSME_00048039-RA", "tokens": null, "family_name": "OG_42_0129564", "family_id": 1089373, "family_url": "/family/view/1089373", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#50E", "family_shape": "hexagon", "lc_label": "OG_42_0129564", "lc_color": "#A9A9A9", "lc_shape": "octagon", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00009605-RA", "name": "PSME_00009605-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 541899, "gene_name": "PSME_00009605-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/541899", "color": "#CCC", "shape": "ellipse", "description": "(at5g65560 : 133.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G77340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q76c99|rf1_orysa : 106.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 266.0) & (original description: no original description)", "best_name": "PSME_00009605-RA", "tokens": null, "interpro": ["Pentatricopeptide_repeat", "Pentatricopeptide_repeat"], "family_name": "OG_42_0122680", "family_id": 1082489, "family_url": "/family/view/1082489", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#335", "family_shape": "octagon", "lc_label": "OG_42_0122680;OG_42_0010176;Pentatricopeptide_repeat", "lc_color": "#7FFFD4", "lc_shape": "triangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00019949-RA", "name": "PSME_00019949-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 548702, "gene_name": "PSME_00019949-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/548702", "color": "#CCC", "shape": "ellipse", "description": "(at1g68920 : 206.0) basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: cryptochrome-interacting basic-helix-loop-helix 5 (TAIR:AT1G26260.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 412.0) & (original description: no original description)", "best_name": "PSME_00019949-RA", "tokens": null, "interpro": ["bHLH_dom"], "family_name": "OG_42_0000125", "family_id": 959934, "family_url": "/family/view/959934", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#438", "family_shape": "rectangle", "lc_label": "bHLH_dom;OG_42_0000125", "lc_color": "#FF3300", "lc_shape": "triangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00037900-RA", "name": "PSME_00037900-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 559922, "gene_name": "PSME_00037900-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/559922", "color": "#CCC", "shape": "ellipse", "description": "(q9fxt4|agal_orysa : 258.0) Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase) (Alpha-D-galactoside galactohydrolase) - Oryza sativa (Rice) & (at5g08370 : 257.0) alpha-galactosidase 2 (AGAL2); FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: positive regulation of flower development, leaf morphogenesis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, family 27 (InterPro:IPR002241), Glycoside hydrolase, clan GH-D (InterPro:IPR000111), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: alpha-galactosidase 1 (TAIR:AT5G08380.1); Has 1586 Blast hits to 1573 proteins in 339 species: Archae - 4; Bacteria - 587; Metazoa - 332; Fungi - 271; Plants - 223; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink). & (reliability: 514.0) & (original description: no original description)", "best_name": "PSME_00037900-RA", "tokens": null, "interpro": ["Glyco_hydro_27"], "family_name": "OG_42_0000657", "family_id": 960466, "family_url": "/family/view/960466", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#611", "family_shape": "octagon", "lc_label": "OG_42_0000657;Glyco_hydro_27", "lc_color": "#FFE4C4", "lc_shape": "hexagon", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00050160-RA", "name": "PSME_00050160-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 567598, "gene_name": "PSME_00050160-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/567598", "color": "#CCC", "shape": "ellipse", "description": "(at5g52390 : 160.0) PAR1 protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: PAR1 (InterPro:IPR009489); BEST Arabidopsis thaliana protein match is: PAR1 protein (TAIR:AT3G54040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 320.0) & (original description: no original description)", "best_name": "PSME_00050160-RA", "tokens": null, "interpro": ["PAR1"], "family_name": "OG_42_0000813", "family_id": 960622, "family_url": "/family/view/960622", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#169", "family_shape": "hexagon", "lc_label": "OG_42_0000813;PAR1", "lc_color": "#993399", "lc_shape": "diamond", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00011372-RA", "name": "PSME_00011372-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 543101, "gene_name": "PSME_00011372-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/543101", "color": "#CCC", "shape": "ellipse", "description": "(p51110|dfra_vitvi : 125.0) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR) (Dihydrokaempferol 4-reductase) - Vitis vinifera (Grape) & (at1g61720 : 124.0) Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.; BANYULS (BAN); FUNCTIONS IN: oxidoreductase activity, anthocyanidin reductase activity; INVOLVED IN: negative regulation of flavonoid biosynthetic process; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: C globular stage, seed development stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: dihydroflavonol 4-reductase (TAIR:AT5G42800.1); Has 9654 Blast hits to 9641 proteins in 1549 species: Archae - 92; Bacteria - 3374; Metazoa - 271; Fungi - 951; Plants - 2463; Viruses - 15; Other Eukaryotes - 2488 (source: NCBI BLink). & (reliability: 248.0) & (original description: no original description)", "best_name": "PSME_00011372-RA", "tokens": null, "family_name": "OG_42_0123011", "family_id": 1082820, "family_url": "/family/view/1082820", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#BD8", "family_shape": "triangle", "lc_label": "OG_42_0123011", "lc_color": "#008000", "lc_shape": "vee", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00036669-RA", "name": "PSME_00036669-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 559148, "gene_name": "PSME_00036669-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/559148", "color": "#CCC", "shape": "ellipse", "description": "(at4g36360 : 122.0) putative beta-galactosidase (BGAL3 gene); beta-galactosidase 3 (BGAL3); FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta galactosidase 1 (TAIR:AT3G13750.1); Has 2405 Blast hits to 2192 proteins in 479 species: Archae - 15; Bacteria - 1021; Metazoa - 436; Fungi - 211; Plants - 628; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). & (p45582|bgal_aspof : 114.0) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) - Asparagus officinalis (Garden asparagus) & (reliability: 244.0) & (original description: no original description)", "best_name": "PSME_00036669-RA", "tokens": null, "interpro": ["Lectin_gal-bd_dom"], "family_name": "OG_42_0000109", "family_id": 959918, "family_url": "/family/view/959918", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#0DE", "family_shape": "rectangle", "lc_label": "Lectin_gal-bd_dom;OG_42_0000109", "lc_color": "#FFE4C4", "lc_shape": "rectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00033540-RA", "name": "PSME_00033540-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 557195, "gene_name": "PSME_00033540-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/557195", "color": "#CCC", "shape": "ellipse", "description": "(at4g21790 : 154.0) encodes a host factor that is required for TMV virus multiplication.; tobamovirus multiplication 1 (TOM1); INVOLVED IN: viral replication complex formation and maintenance; LOCATED IN: vacuolar membrane, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1084 (InterPro:IPR009457); BEST Arabidopsis thaliana protein match is: tobamovirus multiplication protein 3 (TAIR:AT2G02180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 308.0) & (original description: no original description)", "best_name": "PSME_00033540-RA", "tokens": null, "interpro": ["DUF1084"], "family_name": "OG_42_0126952", "family_id": 1086761, "family_url": "/family/view/1086761", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#770", "family_shape": "ellipse", "lc_label": "OG_42_0126952;DUF1084", "lc_color": "#D2691E", "lc_shape": "roundrectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00046187-RA", "name": "PSME_00046187-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 565065, "gene_name": "PSME_00046187-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/565065", "color": "#CCC", "shape": "ellipse", "description": "(at3g58690 : 283.0) Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G54820.1); Has 119556 Blast hits to 118228 proteins in 3954 species: Archae - 119; Bacteria - 14059; Metazoa - 43160; Fungi - 10190; Plants - 33928; Viruses - 396; Other Eukaryotes - 17704 (source: NCBI BLink). & (q8l4h4|nork_medtr : 147.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 566.0) & (original description: no original description)", "best_name": "PSME_00046187-RA", "tokens": null, "interpro": ["Prot_kinase_dom"], "family_name": "OG_42_0129225", "family_id": 1089034, "family_url": "/family/view/1089034", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#887", "family_shape": "roundrectangle", "lc_label": "EGF_dom;OG_42_0001196;OG_42_0127265;OG_42_0001260;OG_42_0129225;LRR_N_plant-typ;OG_42_0000710;OG_42_0128099;OG_42_0000268;Leu-rich_rpt;OG_42_0000089;OG_42_0007095;OG_42_0010941;OG_42_0125998;Prot_kinase_dom;OG_42_0127611;OG_42_0003768;OG_42_0010399", "lc_color": "#FFE4C4", "lc_shape": "roundrectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00018157-RA", "name": "PSME_00018157-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 547539, "gene_name": "PSME_00018157-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/547539", "color": "#CCC", "shape": "ellipse", "description": "(at4g33260 : 293.0) putative cdc20 protein (CDC20.2); CDC20.2; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT4G33270.1). & (reliability: 582.0) & (original description: no original description)", "best_name": "PSME_00018157-RA", "tokens": null, "interpro": ["WD40_repeat"], "family_name": "OG_42_0124265", "family_id": 1084074, "family_url": "/family/view/1084074", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#BD2", "family_shape": "rectangle", "lc_label": "WD40_repeat;OG_42_0124265;OG_42_0004084;OG_42_0005247", "lc_color": "#ADFF2F", "lc_shape": "rectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00048632-RA", "name": "PSME_00048632-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 566612, "gene_name": "PSME_00048632-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/566612", "color": "#CCC", "shape": "ellipse", "description": "(at5g17540 : 273.0) HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (TAIR:AT3G03480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o24645|hcbt1_diaca : 144.0) Anthranilate N-benzoyltransferase protein 1 (EC 2.3.1.144) (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 1) - Dianthus caryophyllus (Carnation) (Clove pink) & (reliability: 546.0) & (original description: no original description)", "best_name": "PSME_00048632-RA", "tokens": null, "interpro": ["Transferase"], "family_name": "OG_42_0129680", "family_id": 1089489, "family_url": "/family/view/1089489", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#204", "family_shape": "vee", "lc_label": "OG_42_0129680;Transferase;OG_42_0009531", "lc_color": "#7FFFD4", "lc_shape": "hexagon", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00055992-RA", "name": "PSME_00055992-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 570877, "gene_name": "PSME_00055992-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/570877", "color": "#CCC", "shape": "ellipse", "description": "(at2g43590 : 95.1) Chitinase family protein; FUNCTIONS IN: chitin binding, chitinase activity; INVOLVED IN: carbohydrate metabolic process, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43580.1); Has 2744 Blast hits to 2502 proteins in 524 species: Archae - 0; Bacteria - 615; Metazoa - 34; Fungi - 202; Plants - 1760; Viruses - 20; Other Eukaryotes - 113 (source: NCBI BLink). & (p29022|chia_maize : 94.0) Endochitinase A precursor (EC 3.2.1.14) (Seed chitinase A) - Zea mays (Maize) & (reliability: 190.2) & (original description: no original description)", "best_name": "PSME_00055992-RA", "tokens": null, "interpro": ["Glyco_hydro_19_cat"], "family_name": "OG_42_0130910", "family_id": 1090719, "family_url": "/family/view/1090719", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#CDE", "family_shape": "triangle", "lc_label": "OG_42_0130910;Glyco_hydro_19_cat", "lc_color": "#FF3300", "lc_shape": "ellipse", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00028794-RA", "name": "PSME_00028794-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 554179, "gene_name": "PSME_00028794-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/554179", "color": "#CCC", "shape": "ellipse", "description": "(at4g26790 : 291.0) GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G42990.1); Has 3601 Blast hits to 3560 proteins in 263 species: Archae - 0; Bacteria - 426; Metazoa - 0; Fungi - 31; Plants - 3127; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). & (p40603|apg_brana : 226.0) Anter-specific proline-rich protein APG (Protein CEX) (Fragment) - Brassica napus (Rape) & (reliability: 582.0) & (original description: no original description)", "best_name": "PSME_00028794-RA", "tokens": null, "interpro": ["GDSL"], "family_name": "OG_42_0000214", "family_id": 960023, "family_url": "/family/view/960023", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#922", "family_shape": "triangle", "lc_label": "OG_42_0000214;OG_42_0000097;GDSL", "lc_color": "#993399", "lc_shape": "rectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00044418-RA", "name": "PSME_00044418-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 563968, "gene_name": "PSME_00044418-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/563968", "color": "#CCC", "shape": "ellipse", "description": " no hits & (original description: no original description)", "best_name": "PSME_00044418-RA", "tokens": null, "interpro": ["KH_dom_type_1"], "family_name": "OG_42_0128892", "family_id": 1088701, "family_url": "/family/view/1088701", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#FF3", "family_shape": "roundrectangle", "lc_label": "OG_42_0128892;KH_dom_type_1", "lc_color": "#FFFF00", "lc_shape": "hexagon", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00042675-RA", "name": "PSME_00042675-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 562866, "gene_name": "PSME_00042675-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/562866", "color": "#CCC", "shape": "ellipse", "description": " no hits & (original description: no original description)", "best_name": "PSME_00042675-RA", "tokens": null, "family_name": "OG_42_0128591", "family_id": 1088400, "family_url": "/family/view/1088400", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#65E", "family_shape": "rectangle", "lc_label": "OG_42_0128591", "lc_color": "#00BFFF", "lc_shape": "rectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00032978-RA", "name": "PSME_00032978-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 556827, "gene_name": "PSME_00032978-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/556827", "color": "#CCC", "shape": "ellipse", "description": " no hits & (original description: no original description)", "best_name": "PSME_00032978-RA", "tokens": null, "family_name": "OG_42_0000785", "family_id": 960594, "family_url": "/family/view/960594", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#BA1", "family_shape": "hexagon", "lc_label": "OG_42_0000785", "lc_color": "#FFE4C4", "lc_shape": "octagon", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00022151-RA", "name": "PSME_00022151-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 550088, "gene_name": "PSME_00022151-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/550088", "color": "#CCC", "shape": "ellipse", "description": "(at4g36730 : 107.0) member of a gene family encoding basic leucine zipper proteins (GBFs) which bind the G-box; G-box binding factor 1 (GBF1); CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), G-box binding, MFMR (InterPro:IPR012900), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: basic region/leucine zipper transcription factor 16 (TAIR:AT2G35530.1); Has 3891 Blast hits to 3827 proteins in 347 species: Archae - 8; Bacteria - 109; Metazoa - 1441; Fungi - 440; Plants - 1415; Viruses - 137; Other Eukaryotes - 341 (source: NCBI BLink). & (q99089|cprf1_petcr : 95.9) Common plant regulatory factor CPRF-1 - Petroselinum crispum (Parsley) (Petroselinum hortense) & (reliability: 214.0) & (original description: no original description)", "best_name": "PSME_00022151-RA", "tokens": null, "family_name": "OG_42_0001448", "family_id": 961257, "family_url": "/family/view/961257", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#F0E", "family_shape": "diamond", "lc_label": "MFMR;bZIP;OG_42_0001448", "lc_color": "#00BFFF", "lc_shape": "diamond", "species_color": "#811DCD", "tag": "always_show"}}, {"data": {"id": "PSME_00021708-RA", "name": "PSME_00021708-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 549808, "gene_name": "PSME_00021708-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/549808", "color": "#CCC", "shape": "ellipse", "description": "(at5g66560 : 98.6) Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G50840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 197.2) & (original description: no original description)", "best_name": "PSME_00021708-RA", "tokens": null, "family_name": "OG_42_0000067", "family_id": 959876, "family_url": "/family/view/959876", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#B58", "family_shape": "hexagon", "lc_label": "OG_42_0000067", "lc_color": "#00BFFF", "lc_shape": "octagon", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00025854-RA", "name": "PSME_00025854-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 552413, "gene_name": "PSME_00025854-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/552413", "color": "#CCC", "shape": "ellipse", "description": "(at3g03740 : 139.0) BTB-POZ and MATH domain 4 (BPM4); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 5789 Blast hits to 5682 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 3860; Fungi - 138; Plants - 1466; Viruses - 48; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 266.0) & (original description: no original description)", "best_name": "PSME_00025854-RA", "tokens": null, "interpro": ["BTB/POZ_dom"], "family_name": "OG_42_0000025", "family_id": 959834, "family_url": "/family/view/959834", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#7D4", "family_shape": "diamond", "lc_label": "OG_42_0000025;BTB/POZ_dom", "lc_color": "#FFD700", "lc_shape": "diamond", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00038602-RA", "name": "PSME_00038602-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 560351, "gene_name": "PSME_00038602-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/560351", "color": "#CCC", "shape": "ellipse", "description": "(at1g64390 : 104.0) glycosyl hydrolase 9C2 (GH9C2); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Carbohydrate-binding (InterPro:IPR008965), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C3 (TAIR:AT4G11050.1); Has 1850 Blast hits to 1830 proteins in 260 species: Archae - 2; Bacteria - 630; Metazoa - 187; Fungi - 17; Plants - 921; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink). & (q5nat8|gun1_orysa : 85.1) Endoglucanase 1 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 1) (OsGLU7) - Oryza sativa (Rice) & (reliability: 208.0) & (original description: no original description)", "best_name": "PSME_00038602-RA", "tokens": null, "interpro": ["Glyco_hydro_9"], "family_name": "OG_42_0012145", "family_id": 971954, "family_url": "/family/view/971954", "family_clade": "Archaeplastida", "family_clade_color": "#ADFF2F", "family_clade_shape": "roundrectangle", "family_clade_count": 22, "family_color": "#7DB", "family_shape": "hexagon", "lc_label": "OG_42_0012145;Glyco_hydro_9", "lc_color": "#008000", "lc_shape": "ellipse", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00038383-RA", "name": "PSME_00038383-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 560229, "gene_name": "PSME_00038383-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/560229", "color": "#CCC", "shape": "ellipse", "description": "(at5g11460 : 93.6) Protein of unknown function (DUF581); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF581 (InterPro:IPR007650); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT2G25690.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 187.2) & (original description: no original description)", "best_name": "PSME_00038383-RA", "tokens": null, "interpro": ["Zf-FLZ_dom"], "family_name": "OG_42_0000100", "family_id": 959909, "family_url": "/family/view/959909", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#F26", "family_shape": "diamond", "lc_label": "OG_42_0000100;Zf-FLZ_dom", "lc_color": "#ADFF2F", "lc_shape": "diamond", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00016852-RA", "name": "PSME_00016852-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 546703, "gene_name": "PSME_00016852-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/546703", "color": "#CCC", "shape": "ellipse", "description": "(at1g46264 : 151.0) Encodes SCHIZORIZA, a member of Heat Shock Transcription Factor (Hsf) family. Functions as a nuclear factor regulating asymmetry of stem cell divisions.; heat shock transcription factor B4 (HSFB4); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: asymmetric cell division; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock factor 4 (TAIR:AT4G36990.1); Has 2061 Blast hits to 2048 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 324; Fungi - 468; Plants - 781; Viruses - 0; Other Eukaryotes - 488 (source: NCBI BLink). & (reliability: 280.0) & (original description: no original description)", "best_name": "PSME_00016852-RA", "tokens": null, "interpro": ["HSF_DNA-bd"], "family_name": "OG_42_0000092", "family_id": 959901, "family_url": "/family/view/959901", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#377", "family_shape": "rhomboid", "lc_label": "OG_42_0000092;HSF_DNA-bd", "lc_color": "#7FFFD4", "lc_shape": "diamond", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00043938-RA", "name": "PSME_00043938-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 563675, "gene_name": "PSME_00043938-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/563675", "color": "#CCC", "shape": "ellipse", "description": "(at5g15720 : 194.0) Contains lipase signature motif and GDSL domain.; GDSL-motif lipase 7 (GLIP7); FUNCTIONS IN: lipase activity, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G29670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p40603|apg_brana : 117.0) Anter-specific proline-rich protein APG (Protein CEX) (Fragment) - Brassica napus (Rape) & (reliability: 388.0) & (original description: no original description)", "best_name": "PSME_00043938-RA", "tokens": null, "interpro": ["GDSL"], "family_name": "OG_42_0000097", "family_id": 959906, "family_url": "/family/view/959906", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#D07", "family_shape": "rectangle", "lc_label": "OG_42_0000214;OG_42_0000097;GDSL", "lc_color": "#993399", "lc_shape": "rectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00022304-RA", "name": "PSME_00022304-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 550188, "gene_name": "PSME_00022304-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/550188", "color": "#CCC", "shape": "ellipse", "description": "(at5g67270 : 166.0) encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.; end binding protein 1C (EB1C); CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), EB1, C-terminal (InterPro:IPR004953); BEST Arabidopsis thaliana protein match is: microtubule end binding protein EB1A (TAIR:AT3G47690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 332.0) & (original description: no original description)", "best_name": "PSME_00022304-RA", "tokens": null, "interpro": ["EB1_C"], "family_name": "OG_42_0125015", "family_id": 1084824, "family_url": "/family/view/1084824", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#9EA", "family_shape": "vee", "lc_label": "OG_42_0125015;EB1_C;OG_42_0121202", "lc_color": "#FFD700", "lc_shape": "ellipse", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00050750-RA", "name": "PSME_00050750-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 567913, "gene_name": "PSME_00050750-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/567913", "color": "#CCC", "shape": "ellipse", "description": "(at1g52880 : 206.0) Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo.; NO APICAL MERISTEM (NAM); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 2 (TAIR:AT3G15510.1); Has 3040 Blast hits to 3032 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 3034; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (q52qh4|nac68_orysa : 171.0) NAC domain-containing protein 68 (ONAC068) - Oryza sativa (Rice) & (reliability: 410.0) & (original description: no original description)", "best_name": "PSME_00050750-RA", "tokens": null, "interpro": ["NAC-dom"], "family_name": "OG_42_0000084", "family_id": 959893, "family_url": "/family/view/959893", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#FD8", "family_shape": "triangle", "lc_label": "OG_42_0000017;OG_42_0000084;NAC-dom", "lc_color": "#008000", "lc_shape": "roundrectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00010602-RA", "name": "PSME_00010602-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 542580, "gene_name": "PSME_00010602-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/542580", "color": "#CCC", "shape": "ellipse", "description": "(at3g54100 : 369.0) O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT2G37980.1); Has 847 Blast hits to 824 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 847; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 706.0) & (original description: no original description)", "best_name": "PSME_00010602-RA", "tokens": null, "interpro": ["GDP-Fuc_O-FucTrfase"], "family_name": "OG_42_0122868", "family_id": 1082677, "family_url": "/family/view/1082677", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#DCE", "family_shape": "diamond", "lc_label": "GDP-Fuc_O-FucTrfase;OG_42_0122868", "lc_color": "#00BFFF", "lc_shape": "hexagon", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00026967-RA", "name": "PSME_00026967-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 553078, "gene_name": "PSME_00026967-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/553078", "color": "#CCC", "shape": "ellipse", "description": "(at3g03740 : 218.0) BTB-POZ and MATH domain 4 (BPM4); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 5789 Blast hits to 5682 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 3860; Fungi - 138; Plants - 1466; Viruses - 48; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 400.0) & (original description: no original description)", "best_name": "PSME_00026967-RA", "tokens": null, "interpro": ["BTB/POZ_dom"], "family_name": "OG_42_0000025", "family_id": 959834, "family_url": "/family/view/959834", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#7D4", "family_shape": "diamond", "lc_label": "OG_42_0000025;BTB/POZ_dom", "lc_color": "#FFD700", "lc_shape": "diamond", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00016853-RA", "name": "PSME_00016853-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 546704, "gene_name": "PSME_00016853-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/546704", "color": "#CCC", "shape": "ellipse", "description": "(at5g62620 : 509.0) Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, sugar binding, galactosyltransferase activity; INVOLVED IN: protein amino acid glycosylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT1G74800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1018.0) & (original description: no original description)", "best_name": "PSME_00016853-RA", "tokens": null, "interpro": ["Glyco_trans_31", "Galectin_CRD"], "family_name": "OG_42_0000321", "family_id": 960130, "family_url": "/family/view/960130", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#9B3", "family_shape": "octagon", "lc_label": "Glyco_trans_31;Galectin_CRD;OG_42_0000321", "lc_color": "#D2691E", "lc_shape": "hexagon", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00018225-RA", "name": "PSME_00018225-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 547588, "gene_name": "PSME_00018225-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/547588", "color": "#CCC", "shape": "ellipse", "description": " no hits & (original description: no original description)", "best_name": "PSME_00018225-RA", "tokens": null, "interpro": ["Poly(ADP-ribose)pol_reg_dom"], "family_name": "OG_42_0001669", "family_id": 961478, "family_url": "/family/view/961478", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#302", "family_shape": "octagon", "lc_label": "OG_42_0001669;Poly(ADP-ribose)pol_reg_dom", "lc_color": "#A9A9A9", "lc_shape": "ellipse", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00047162-RA", "name": "PSME_00047162-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 565659, "gene_name": "PSME_00047162-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/565659", "color": "#CCC", "shape": "ellipse", "description": "(at4g03210 : 301.0) encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.; xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Beta-glucanase (InterPro:IPR008264), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q41542|xth_wheat : 271.0) Probable xyloglucan endotransglucosylase/hydrolase precursor (EC 2.4.1.207) - Triticum aestivum (Wheat) & (reliability: 602.0) & (original description: no original description)", "best_name": "PSME_00047162-RA", "tokens": null, "interpro": ["GH16", "XET_C"], "family_name": "OG_42_0000032", "family_id": 959841, "family_url": "/family/view/959841", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#814", "family_shape": "hexagon", "lc_label": "GH16;OG_42_0000032;XET_C", "lc_color": "#FF3300", "lc_shape": "rectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00003786-RA", "name": "PSME_00003786-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 537994, "gene_name": "PSME_00003786-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/537994", "color": "#CCC", "shape": "ellipse", "description": "(at5g56490 : 90.5) D-arabinono-1,4-lactone oxidase family protein; FUNCTIONS IN: D-arabinono-1,4-lactone oxidase activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: D-arabinono-1,4-lactone oxidase (InterPro:IPR007173), FAD-binding, type 2 (InterPro:IPR016166), Plant-specific FAD-dependent oxidoreductase (InterPro:IPR010030), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: D-arabinono-1,4-lactone oxidase family protein (TAIR:AT1G32300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 181.0) & (original description: no original description)", "best_name": "PSME_00003786-RA", "tokens": null, "interpro": ["Oxid_FAD_bind_N"], "family_name": "OG_42_0121648", "family_id": 1081457, "family_url": "/family/view/1081457", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#63D", "family_shape": "ellipse", "lc_label": "Oxid_FAD_bind_N;OG_42_0121648", "lc_color": "#A9A9A9", "lc_shape": "roundrectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00043932-RA", "name": "PSME_00043932-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 563672, "gene_name": "PSME_00043932-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/563672", "color": "#CCC", "shape": "ellipse", "description": " no hits & (original description: no original description)", "best_name": "PSME_00043932-RA", "tokens": null, "interpro": ["Znf_CCHC"], "family_name": "OG_42_0001200", "family_id": 961009, "family_url": "/family/view/961009", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#1CC", "family_shape": "ellipse", "lc_label": "OG_42_0001200;Znf_CCHC", "lc_color": "#FFFF00", "lc_shape": "roundrectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00009547-RA", "name": "PSME_00009547-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 541855, "gene_name": "PSME_00009547-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/541855", "color": "#CCC", "shape": "ellipse", "description": "(at4g17500 : 103.0) Encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ATERF-1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.; ethylene responsive element binding factor 1 (ERF-1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene responsive element binding factor 2 (TAIR:AT5G47220.1); Has 5773 Blast hits to 5650 proteins in 248 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5761; Viruses - 2; Other Eukaryotes - 10 (source: NCBI BLink). & (q40479|erf2_tobac : 99.0) Ethylene-responsive transcription factor 2 (Ethylene-responsive element-binding factor 2) (EREBP-2) (NtERF2) - Nicotiana tabacum (Common tobacco) & (reliability: 206.0) & (original description: no original description)", "best_name": "PSME_00009547-RA", "tokens": null, "interpro": ["AP2/ERF_dom"], "family_name": "OG_42_0000000", "family_id": 959809, "family_url": "/family/view/959809", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#78A", "family_shape": "ellipse", "lc_label": "AP2/ERF_dom;OG_42_0000000", "lc_color": "#FF00FF", "lc_shape": "hexagon", "species_color": "#811DCD", "tag": "always_show"}}, {"data": {"id": "PSME_00040029-RA", "name": "PSME_00040029-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 561232, "gene_name": "PSME_00040029-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/561232", "color": "#CCC", "shape": "ellipse", "description": "(at3g49670 : 504.0) Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM1,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.; BARELY ANY MERISTEM 2 (BAM2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT5G65700.2); Has 214102 Blast hits to 137812 proteins in 4967 species: Archae - 148; Bacteria - 22093; Metazoa - 65883; Fungi - 10747; Plants - 88678; Viruses - 437; Other Eukaryotes - 26116 (source: NCBI BLink). & (p93194|rpk1_iponi : 232.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 978.0) & (original description: no original description)", "best_name": "PSME_00040029-RA", "tokens": null, "interpro": ["Prot_kinase_dom"], "family_name": "OG_42_0128099", "family_id": 1087908, "family_url": "/family/view/1087908", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#8A1", "family_shape": "triangle", "lc_label": "EGF_dom;OG_42_0001196;OG_42_0127265;OG_42_0001260;OG_42_0129225;LRR_N_plant-typ;OG_42_0000710;OG_42_0128099;OG_42_0000268;Leu-rich_rpt;OG_42_0000089;OG_42_0007095;OG_42_0010941;OG_42_0125998;Prot_kinase_dom;OG_42_0127611;OG_42_0003768;OG_42_0010399", "lc_color": "#FFE4C4", "lc_shape": "roundrectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00052701-RA", "name": "PSME_00052701-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 568940, "gene_name": "PSME_00052701-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/568940", "color": "#CCC", "shape": "ellipse", "description": " no hits & (original description: no original description)", "best_name": "PSME_00052701-RA", "tokens": null, "interpro": ["Pentatricopeptide_repeat", "Pentatricopeptide_repeat"], "family_name": "OG_42_0010176", "family_id": 969985, "family_url": "/family/view/969985", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#FAE", "family_shape": "triangle", "lc_label": "OG_42_0122680;OG_42_0010176;Pentatricopeptide_repeat", "lc_color": "#7FFFD4", "lc_shape": "triangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00022839-RA", "name": "PSME_00022839-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 550535, "gene_name": "PSME_00022839-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/550535", "color": "#CCC", "shape": "ellipse", "description": "(at1g69530 : 188.0) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.; expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1). & (p93442|expa4_orysa : 184.0) Expansin-A4 precursor (OsEXPA4) (Alpha-expansin-4) (OsEXP4) (OsaEXPa1.22) - Oryza sativa (Rice) & (reliability: 376.0) & (original description: no original description)", "best_name": "PSME_00022839-RA", "tokens": null, "family_name": "OG_42_0125119", "family_id": 1084928, "family_url": "/family/view/1084928", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#A15", "family_shape": "ellipse", "lc_label": "OG_42_0125119", "lc_color": "#00BFFF", "lc_shape": "roundrectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00021659-RA", "name": "PSME_00021659-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 549769, "gene_name": "PSME_00021659-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/549769", "color": "#CCC", "shape": "ellipse", "description": "(at3g25250 : 296.0) Arabidopsis protein kinase; AGC2-1; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, root, stamen, pollen tube; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (TAIR:AT4G13000.1); Has 87313 Blast hits to 84259 proteins in 2947 species: Archae - 68; Bacteria - 13079; Metazoa - 33183; Fungi - 11494; Plants - 12113; Viruses - 235; Other Eukaryotes - 17141 (source: NCBI BLink). & (p15792|kpk1_phavu : 236.0) Protein kinase PVPK-1 (EC 2.7.11.1) - Phaseolus vulgaris (Kidney bean) (French bean) & (reliability: 592.0) & (original description: no original description)", "best_name": "PSME_00021659-RA", "tokens": null, "interpro": ["Prot_kinase_dom", "Prot_kinase_dom"], "family_name": "OG_42_0000089", "family_id": 959898, "family_url": "/family/view/959898", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#3A8", "family_shape": "diamond", "lc_label": "EGF_dom;OG_42_0001196;OG_42_0127265;OG_42_0001260;OG_42_0129225;LRR_N_plant-typ;OG_42_0000710;OG_42_0128099;OG_42_0000268;Leu-rich_rpt;OG_42_0000089;OG_42_0007095;OG_42_0010941;OG_42_0125998;Prot_kinase_dom;OG_42_0127611;OG_42_0003768;OG_42_0010399", "lc_color": "#FFE4C4", "lc_shape": "roundrectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00029368-RA", "name": "PSME_00029368-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 554536, "gene_name": "PSME_00029368-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/554536", "color": "#CCC", "shape": "ellipse", "description": "(at3g24240 : 334.0) Leucine-rich repeat receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase family protein (TAIR:AT5G48940.1); Has 246558 Blast hits to 135557 proteins in 3810 species: Archae - 176; Bacteria - 24262; Metazoa - 71588; Fungi - 10499; Plants - 111580; Viruses - 361; Other Eukaryotes - 28092 (source: NCBI BLink). & (p93194|rpk1_iponi : 189.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 668.0) & (original description: no original description)", "best_name": "PSME_00029368-RA", "tokens": null, "interpro": ["Leu-rich_rpt_4"], "family_name": "OG_42_0126212", "family_id": 1086021, "family_url": "/family/view/1086021", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#33A", "family_shape": "ellipse", "lc_label": "Leu-rich_rpt_4;OG_42_0126212", "lc_color": "#FFE4C4", "lc_shape": "vee", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00035381-RA", "name": "PSME_00035381-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 558366, "gene_name": "PSME_00035381-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/558366", "color": "#CCC", "shape": "ellipse", "description": "(p46609|osh1_orysa : 118.0) Homeobox protein OSH1 - Oryza sativa (Rice) & (at1g23380 : 117.0) homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants.; KNOTTED1-like homeobox gene 6 (KNAT6); FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: meristem maintenance; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: KNOX2 (InterPro:IPR005541), ELK (InterPro:IPR005539), Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), KNOX1 (InterPro:IPR005540), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: KNOTTED-like from Arabidopsis thaliana 2 (TAIR:AT1G70510.1); Has 6018 Blast hits to 6018 proteins in 364 species: Archae - 0; Bacteria - 0; Metazoa - 1717; Fungi - 270; Plants - 3877; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description)", "best_name": "PSME_00035381-RA", "tokens": null, "interpro": ["KNOX2", "KNOX1"], "family_name": "OG_42_0000234", "family_id": 960043, "family_url": "/family/view/960043", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#061", "family_shape": "vee", "lc_label": "OG_42_0000234;KNOX2;KNOX1", "lc_color": "#FF00FF", "lc_shape": "roundrectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00023461-RA", "name": "PSME_00023461-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 550913, "gene_name": "PSME_00023461-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/550913", "color": "#CCC", "shape": "ellipse", "description": "(p22195|per1_arahy : 415.0) Cationic peroxidase 1 precursor (EC 1.11.1.7) (PNPC1) - Arachis hypogaea (Peanut) & (at5g05340 : 374.0) Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G58400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 748.0) & (original description: no original description)", "best_name": "PSME_00023461-RA", "tokens": null, "interpro": ["Haem_peroxidase_pln/fun/bac"], "family_name": "OG_42_0000036", "family_id": 959845, "family_url": "/family/view/959845", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#5AC", "family_shape": "roundrectangle", "lc_label": "OG_42_0000036;OG_42_0010919;Haem_peroxidase_pln/fun/bac", "lc_color": "#FFD700", "lc_shape": "rectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00009074-RA", "name": "PSME_00009074-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 541538, "gene_name": "PSME_00009074-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/541538", "color": "#CCC", "shape": "ellipse", "description": "(at5g63180 : 268.0) Pectin lyase-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G24780.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p40972|pel_tobac : 182.0) Pectate lyase precursor (EC 4.2.2.2) - Nicotiana tabacum (Common tobacco) & (reliability: 536.0) & (original description: no original description)", "best_name": "PSME_00009074-RA", "tokens": null, "family_name": "OG_42_0122587", "family_id": 1082396, "family_url": "/family/view/1082396", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#EAE", "family_shape": "hexagon", "lc_label": "OG_42_0122587", "lc_color": "#D2691E", "lc_shape": "octagon", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00009372-RA", "name": "PSME_00009372-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 541743, "gene_name": "PSME_00009372-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/541743", "color": "#CCC", "shape": "ellipse", "description": "(at1g02850 : 424.0) beta glucosidase 11 (BGLU11); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 10 (TAIR:AT4G27830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p49235|bglc_maize : 279.0) Beta-glucosidase, chloroplast precursor (EC 3.2.1.21) (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) - Zea mays (Maize) & (reliability: 848.0) & (original description: no original description)", "best_name": "PSME_00009372-RA", "tokens": null, "interpro": ["Glyco_hydro_1", "Glyco_hydro_1"], "family_name": "OG_42_0000033", "family_id": 959842, "family_url": "/family/view/959842", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#E5D", "family_shape": "rhomboid", "lc_label": "Glyco_hydro_1;OG_42_0000033", "lc_color": "#7FFFD4", "lc_shape": "octagon", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00046747-RA", "name": "PSME_00046747-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 565395, "gene_name": "PSME_00046747-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/565395", "color": "#CCC", "shape": "ellipse", "description": " no hits & (original description: no original description)", "best_name": "PSME_00046747-RA", "tokens": null, "interpro": ["DUF659"], "family_name": "OG_42_0005374", "family_id": 965183, "family_url": "/family/view/965183", "family_clade": "Archaeplastida", "family_clade_color": "#ADFF2F", "family_clade_shape": "roundrectangle", "family_clade_count": 22, "family_color": "#BD2", "family_shape": "roundrectangle", "lc_label": "OG_42_0005374;DUF659", "lc_color": "#FF3300", "lc_shape": "roundrectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00026086-RA", "name": "PSME_00026086-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 552544, "gene_name": "PSME_00026086-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/552544", "color": "#CCC", "shape": "ellipse", "description": "(q03773|e13a_soybn : 179.0) Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) - Glycine max (Soybean) & (at4g16260 : 176.0) Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: defense response to fungus, incompatible interaction, response to salt stress; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 1 (TAIR:AT3G57270.1); Has 2169 Blast hits to 2154 proteins in 141 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 22; Plants - 2121; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). & (reliability: 352.0) & (original description: no original description)", "best_name": "PSME_00026086-RA", "tokens": null, "interpro": ["Glyco_hydro_17", "Glyco_hydro_17"], "family_name": "OG_42_0125657", "family_id": 1085466, "family_url": "/family/view/1085466", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#F5A", "family_shape": "ellipse", "lc_label": "Glyco_hydro_17;OG_42_0125657", "lc_color": "#ADFF2F", "lc_shape": "roundrectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00007551-RA", "name": "PSME_00007551-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 540542, "gene_name": "PSME_00007551-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/540542", "color": "#CCC", "shape": "ellipse", "description": " no hits & (original description: no original description)", "best_name": "PSME_00007551-RA", "tokens": null, "interpro": ["Reg_chr_condens", "Reg_chr_condens"], "family_name": "OG_42_0004862", "family_id": 964671, "family_url": "/family/view/964671", "family_clade": "Archaeplastida", "family_clade_color": "#ADFF2F", "family_clade_shape": "roundrectangle", "family_clade_count": 22, "family_color": "#02F", "family_shape": "vee", "lc_label": "Reg_chr_condens;OG_42_0004862", "lc_color": "#D2691E", "lc_shape": "vee", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00001075-RA", "name": "PSME_00001075-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 536139, "gene_name": "PSME_00001075-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/536139", "color": "#CCC", "shape": "ellipse", "description": "(at5g62500 : 94.0) encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.; end binding protein 1B (EB1B); FUNCTIONS IN: microtubule binding; INVOLVED IN: thigmotropism, cytoskeleton organization, positive gravitropism; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), EB1, C-terminal (InterPro:IPR004953); BEST Arabidopsis thaliana protein match is: microtubule end binding protein EB1A (TAIR:AT3G47690.1); Has 1005 Blast hits to 968 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 581; Fungi - 144; Plants - 110; Viruses - 3; Other Eukaryotes - 167 (source: NCBI BLink). & (reliability: 188.0) & (original description: no original description)", "best_name": "PSME_00001075-RA", "tokens": null, "interpro": ["EB1_C"], "family_name": "OG_42_0121202", "family_id": 1081011, "family_url": "/family/view/1081011", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#C68", "family_shape": "rectangle", "lc_label": "OG_42_0125015;EB1_C;OG_42_0121202", "lc_color": "#FFD700", "lc_shape": "ellipse", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00037414-RA", "name": "PSME_00037414-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 559591, "gene_name": "PSME_00037414-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/559591", "color": "#CCC", "shape": "ellipse", "description": "(at1g28440 : 471.0) HAESA-like 1 (HSL1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT4G28490.1); Has 214855 Blast hits to 132793 proteins in 4138 species: Archae - 139; Bacteria - 23060; Metazoa - 65756; Fungi - 10225; Plants - 90032; Viruses - 401; Other Eukaryotes - 25242 (source: NCBI BLink). & (p93194|rpk1_iponi : 283.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 942.0) & (original description: no original description)", "best_name": "PSME_00037414-RA", "tokens": null, "interpro": ["Prot_kinase_dom"], "family_name": "OG_42_0127611", "family_id": 1087420, "family_url": "/family/view/1087420", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#2B1", "family_shape": "ellipse", "lc_label": "EGF_dom;OG_42_0001196;OG_42_0127265;OG_42_0001260;OG_42_0129225;LRR_N_plant-typ;OG_42_0000710;OG_42_0128099;OG_42_0000268;Leu-rich_rpt;OG_42_0000089;OG_42_0007095;OG_42_0010941;OG_42_0125998;Prot_kinase_dom;OG_42_0127611;OG_42_0003768;OG_42_0010399", "lc_color": "#FFE4C4", "lc_shape": "roundrectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00013770-RA", "name": "PSME_00013770-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 544701, "gene_name": "PSME_00013770-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/544701", "color": "#CCC", "shape": "ellipse", "description": "(at5g17420 : 543.0) Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).; IRREGULAR XYLEM 3 (IRX3); FUNCTIONS IN: cellulose synthase activity; INVOLVED IN: cellulose biosynthetic process, plant-type cell wall biogenesis, secondary cell wall biogenesis, rhamnogalacturonan I side chain metabolic process; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Cellulose synthase family protein (TAIR:AT5G05170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1086.0) & (original description: no original description)", "best_name": "PSME_00013770-RA", "tokens": null, "interpro": ["Cellulose_synth", "Cellulose_synth"], "family_name": "OG_42_0123487", "family_id": 1083296, "family_url": "/family/view/1083296", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#E7B", "family_shape": "vee", "lc_label": "OG_42_0123487;Cellulose_synth", "lc_color": "#D2691E", "lc_shape": "diamond", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00035268-RA", "name": "PSME_00035268-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 558293, "gene_name": "PSME_00035268-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/558293", "color": "#CCC", "shape": "ellipse", "description": "(at3g58690 : 188.0) Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G54820.1); Has 119556 Blast hits to 118228 proteins in 3954 species: Archae - 119; Bacteria - 14059; Metazoa - 43160; Fungi - 10190; Plants - 33928; Viruses - 396; Other Eukaryotes - 17704 (source: NCBI BLink). & (o24585|cri4_maize : 102.0) Putative receptor protein kinase CRINKLY4 precursor (EC 2.7.11.1) - Zea mays (Maize) & (reliability: 376.0) & (original description: no original description)", "best_name": "PSME_00035268-RA", "tokens": null, "interpro": ["Prot_kinase_dom"], "family_name": "OG_42_0127265", "family_id": 1087074, "family_url": "/family/view/1087074", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#2F6", "family_shape": "rectangle", "lc_label": "EGF_dom;OG_42_0001196;OG_42_0127265;OG_42_0001260;OG_42_0129225;LRR_N_plant-typ;OG_42_0000710;OG_42_0128099;OG_42_0000268;Leu-rich_rpt;OG_42_0000089;OG_42_0007095;OG_42_0010941;OG_42_0125998;Prot_kinase_dom;OG_42_0127611;OG_42_0003768;OG_42_0010399", "lc_color": "#FFE4C4", "lc_shape": "roundrectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00014063-RA", "name": "PSME_00014063-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 544897, "gene_name": "PSME_00014063-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/544897", "color": "#CCC", "shape": "ellipse", "description": " no hits & (original description: no original description)", "best_name": "PSME_00014063-RA", "tokens": null, "family_name": "OG_42_0002415", "family_id": 962224, "family_url": "/family/view/962224", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#FC8", "family_shape": "hexagon", "lc_label": "OG_42_0002415", "lc_color": "#FF3300", "lc_shape": "diamond", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00036533-RA", "name": "PSME_00036533-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 559067, "gene_name": "PSME_00036533-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/559067", "color": "#CCC", "shape": "ellipse", "description": "(at5g18460 : 272.0) Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 520.0) & (original description: no original description)", "best_name": "PSME_00036533-RA", "tokens": null, "interpro": ["Neprosin"], "family_name": "OG_42_0000240", "family_id": 960049, "family_url": "/family/view/960049", "family_clade": "None", "family_clade_color": "#CCC", "family_clade_shape": "rectangle", "family_clade_count": 0, "family_color": "#6B4", "family_shape": "diamond", "lc_label": "Neprosin;OG_42_0000240", "lc_color": "#7FFFD4", "lc_shape": "vee", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00028164-RA", "name": "PSME_00028164-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 553816, "gene_name": "PSME_00028164-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/553816", "color": "#CCC", "shape": "ellipse", "description": "(at3g24240 : 536.0) Leucine-rich repeat receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase family protein (TAIR:AT5G48940.1); Has 246558 Blast hits to 135557 proteins in 3810 species: Archae - 176; Bacteria - 24262; Metazoa - 71588; Fungi - 10499; Plants - 111580; Viruses - 361; Other Eukaryotes - 28092 (source: NCBI BLink). & (p93194|rpk1_iponi : 294.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 1072.0) & (original description: no original description)", "best_name": "PSME_00028164-RA", "tokens": null, "interpro": ["Leu-rich_rpt", "Leu-rich_rpt", "Leu-rich_rpt"], "family_name": "OG_42_0125998", "family_id": 1085807, "family_url": "/family/view/1085807", "family_clade": "Pseudotsuga", "family_clade_color": "#008000", "family_clade_shape": "rectangle", "family_clade_count": 1, "family_color": "#08A", "family_shape": "rhomboid", "lc_label": "EGF_dom;OG_42_0001196;OG_42_0127265;OG_42_0001260;OG_42_0129225;LRR_N_plant-typ;OG_42_0000710;OG_42_0128099;OG_42_0000268;Leu-rich_rpt;OG_42_0000089;OG_42_0007095;OG_42_0010941;OG_42_0125998;Prot_kinase_dom;OG_42_0127611;OG_42_0003768;OG_42_0010399", "lc_color": "#FFE4C4", "lc_shape": "roundrectangle", "species_color": "#811DCD", "tag": "hideable"}}, {"data": {"id": "PSME_00025979-RA", "name": "PSME_00025979-RA", "species_id": 16, "species_name": "Pseudotsuga menziesii", "gene_id": 552483, "gene_name": "PSME_00025979-RA", "network_method_id": 15, "node_type": "target", "gene_link": "/sequence/view/552483", "color": "#CCC", "shape": "ellipse", "description": "(p93665|dcs1_goshi : 237.0) (+)-delta-cadinene synthase (EC 4.2.3.13) (D-cadinene synthase) - Gossypium hirsutum (Upland cotton) & (at4g16740 : 225.0) Encodes an (E,E)-alpha-farnesene synthase in the Col ecotype of Arabidopsis. This enzyme can also catalyze the formation of (E)-beta-ocimene as well as trace amounts of myrcene and other related compounds in vitro. The cytosolic localization of the protein may make it favor (E,E)-alpha-farnesene biosynthesis because the precursor of this product, FPP, is primarily cytosolic. Transcript levels for this gene increase in response to treatment with the jasmonic acid mimic coronalon or in response to the insect
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