"sequence_id","alias","species","description","type"
"74186","No alias","Selaginella moellendorffii ","histone deacetylase 1","protein_coding"
"80012","No alias","Selaginella moellendorffii ","histone deacetylase 1","protein_coding"
"84957","No alias","Selaginella moellendorffii ","histone deacetylase 9","protein_coding"
"A4A49_16800","No alias","Nicotiana attenuata","histone deacetylase 19","protein_coding"
"A4A49_27879","No alias","Nicotiana attenuata","histone deacetylase 6","protein_coding"
"A4A49_32383","No alias","Nicotiana attenuata","histone deacetylase 6","protein_coding"
"A4A49_32384","No alias","Nicotiana attenuata","histone deacetylase 6","protein_coding"
"A4A49_33494","No alias","Nicotiana attenuata","histone deacetylase 9","protein_coding"
"At3g44490","No alias","Arabidopsis thaliana","Histone deacetylase 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXN8]","protein_coding"
"At3g44660","No alias","Arabidopsis thaliana","Putative histone deacetylase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1N8]","protein_coding"
"At3g44680","No alias","Arabidopsis thaliana","Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]","protein_coding"
"At4g38130","No alias","Arabidopsis thaliana","Histone deacetylase 19 [Source:UniProtKB/Swiss-Prot;Acc:O22446]","protein_coding"
"At5g35600","No alias","Arabidopsis thaliana","Histone deacetylase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH09]","protein_coding"
"At5g63110","No alias","Arabidopsis thaliana","Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:B1PXB9]","protein_coding"
"Bradi1g37290","No alias","Brachypodium distachyon","histone deacetylase 1","protein_coding"
"Bradi2g42075","No alias","Brachypodium distachyon","histone deacetylase 6","protein_coding"
"Bradi3g08060","No alias","Brachypodium distachyon","histone deacetylase 1","protein_coding"
"Bradi3g22370","No alias","Brachypodium distachyon","histone deacetylase 6","protein_coding"
"Bradi3g44780","No alias","Brachypodium distachyon","histone deacetylase 1","protein_coding"
"Bradi5g09190","No alias","Brachypodium distachyon","histone deacetylase 9","protein_coding"
"Brara.A03767.1","No alias","Brassica rapa","deacetylase component *(HDA19) of SNL-HDA19 histone deacetylase complex & EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & histone deacetylase *(HDA8)","protein_coding"
"Brara.F01687.1","No alias","Brassica rapa","EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & histone deacetylase *(HDA8)","protein_coding"
"Brara.F01690.1","No alias","Brassica rapa","EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & histone deacetylase *(HDA8)","protein_coding"
"Brara.F01971.1","No alias","Brassica rapa","EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & histone deacetylase *(HDA8)","protein_coding"
"Brara.F02002.1","No alias","Brassica rapa","deacetylase component *(HDA9) of HDA9-PWR deacetylation complex & EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & histone deacetylase *(HDA8)","protein_coding"
"Brara.F02210.1","No alias","Brassica rapa","histone deacetylase *(HDA8)","protein_coding"
"Brara.I00727.1","No alias","Brassica rapa","deacetylase component *(HDA19) of SNL-HDA19 histone deacetylase complex & EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & component *(HDA6) of histone deacetylation complex & histone deacetylase *(HDA8)","protein_coding"
"Cre06.g277350","No alias","Chlamydomonas reinhardtii","histone deacetylase 1","protein_coding"
"Cre09.g387393","No alias","Chlamydomonas reinhardtii","histone deacetylase 1","protein_coding"
"Cre16.g673150","No alias","Chlamydomonas reinhardtii","histone deacetylase 9","protein_coding"
"evm.model.contig_2149.18","No alias","Porphyridium purpureum","(at4g38130 : 505.0) Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7.  Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.; histone deacetylase 1 (HD1); CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 6 (TAIR:AT5G63110.1); Has 8759 Blast hits to 8549 proteins in 1452 species: Archae - 219; Bacteria - 3192; Metazoa - 1525; Fungi - 536; Plants - 478; Viruses - 0; Other Eukaryotes - 2809 (source: NCBI BLink). & (p56521|hdac_maize : 483.0) Probable histone deacetylase (RPD3 homolog) - Zea mays (Maize) & (reliability: 1010.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4438.20","No alias","Porphyridium purpureum","(at3g44680 : 541.0) Class I RPD3 type protein; histone deacetylase 9 (HDA9); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 1 (TAIR:AT4G38130.1); Has 8723 Blast hits to 8511 proteins in 1453 species: Archae - 219; Bacteria - 3191; Metazoa - 1512; Fungi - 548; Plants - 472; Viruses - 0; Other Eukaryotes - 2781 (source: NCBI BLink). & (p56521|hdac_maize : 513.0) Probable histone deacetylase (RPD3 homolog) - Zea mays (Maize) & (reliability: 1082.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000113.44","No alias","Cyanophora paradoxa","(at4g38130 : 263.0) Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7.  Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.; histone deacetylase 1 (HD1); CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 6 (TAIR:AT5G63110.1); Has 8759 Blast hits to 8549 proteins in 1452 species: Archae - 219; Bacteria - 3192; Metazoa - 1525; Fungi - 536; Plants - 478; Viruses - 0; Other Eukaryotes - 2809 (source: NCBI BLink). & (p56521|hdac_maize : 260.0) Probable histone deacetylase (RPD3 homolog) - Zea mays (Maize) & (reliability: 526.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000215.121","No alias","Cyanophora paradoxa","(at4g38130 : 506.0) Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7.  Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.; histone deacetylase 1 (HD1); CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 6 (TAIR:AT5G63110.1); Has 8759 Blast hits to 8549 proteins in 1452 species: Archae - 219; Bacteria - 3192; Metazoa - 1525; Fungi - 536; Plants - 478; Viruses - 0; Other Eukaryotes - 2809 (source: NCBI BLink). & (p56521|hdac_maize : 487.0) Probable histone deacetylase (RPD3 homolog) - Zea mays (Maize) & (reliability: 1012.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001307.14","No alias","Cyanophora paradoxa","(at3g44680 : 270.0) Class I RPD3 type protein; histone deacetylase 9 (HDA9); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 1 (TAIR:AT4G38130.1); Has 8723 Blast hits to 8511 proteins in 1453 species: Archae - 219; Bacteria - 3191; Metazoa - 1512; Fungi - 548; Plants - 472; Viruses - 0; Other Eukaryotes - 2781 (source: NCBI BLink). & (p56521|hdac_maize : 263.0) Probable histone deacetylase (RPD3 homolog) - Zea mays (Maize) & (reliability: 540.0) &  (original description: no original description)","protein_coding"
"Glyma.01G245100","No alias","Glycine max","histone deacetylase 1","protein_coding"
"Glyma.04G000200","No alias","Glycine max","histone deacetylase 1","protein_coding"
"Glyma.04G187000","No alias","Glycine max","histone deacetylase 6","protein_coding"
"Glyma.04G187100","No alias","Glycine max","histone deacetylase 6","protein_coding"
"Glyma.05G040600","No alias","Glycine max","histone deacetylase 6","protein_coding"
"Glyma.06G000100","No alias","Glycine max","histone deacetylase 1","protein_coding"
"Glyma.06G178700","No alias","Glycine max","histone deacetylase 6","protein_coding"
"Glyma.11G000300","No alias","Glycine max","histone deacetylase 1","protein_coding"
"Glyma.11G187800","No alias","Glycine max","histone deacetylase 9","protein_coding"
"Glyma.12G086700","No alias","Glycine max","histone deacetylase 9","protein_coding"
"Glyma.17G085700","No alias","Glycine max","histone deacetylase 6","protein_coding"
"GRMZM2G081474","No alias","Zea mays","histone deacetylase 1","protein_coding"
"GRMZM2G119703","No alias","Zea mays","histone deacetylase 9","protein_coding"
"GRMZM2G132363","No alias","Zea mays","histone deacetylase 1","protein_coding"
"GRMZM2G136067","No alias","Zea mays","histone deacetylase 6","protein_coding"
"GRMZM2G163572","No alias","Zea mays","histone deacetylase 1","protein_coding"
"GRMZM2G172883","No alias","Zea mays","histone deacetylase 1","protein_coding"
"GRMZM2G424380","No alias","Zea mays","histone deacetylase 1","protein_coding"
"HORVU2Hr1G072570.5","No alias","Hordeum vulgare","EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond","protein_coding"
"HORVU2Hr1G072600.11","No alias","Hordeum vulgare","histone deacetylase *(HDA8)","protein_coding"
"HORVU4Hr1G044060.1","No alias","Hordeum vulgare","EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & histone deacetylase *(HDA8)","protein_coding"
"HORVU5Hr1G077740.1","No alias","Hordeum vulgare","EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & histone deacetylase *(HDA8)","protein_coding"
"HORVU5Hr1G077760.1","No alias","Hordeum vulgare","EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & histone deacetylase *(HDA8)","protein_coding"
"HORVU5Hr1G077800.1","No alias","Hordeum vulgare","EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & histone deacetylase *(HDA8)","protein_coding"
"HORVU6Hr1G038010.1","No alias","Hordeum vulgare","deacetylase component *(HDA19) of SNL-HDA19 histone deacetylase complex & EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & component *(HDA6) of histone deacetylation complex & histone deacetylase *(HDA8)","protein_coding"
"HORVU6Hr1G038710.1","No alias","Hordeum vulgare","deacetylase component *(HDA19) of SNL-HDA19 histone deacetylase complex & EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & histone deacetylase *(HDA8)","protein_coding"
"HORVU7Hr1G085870.2","No alias","Hordeum vulgare","deacetylase component *(HDA19) of SNL-HDA19 histone deacetylase complex & EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & histone deacetylase *(HDA8)","protein_coding"
"Kfl00212_0150","kfl00212_0150_v1.1","Klebsormidium nitens","(at3g44680 : 637.0) Class I RPD3 type protein; histone deacetylase 9 (HDA9); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 1 (TAIR:AT4G38130.1); Has 8723 Blast hits to 8511 proteins in 1453 species: Archae - 219; Bacteria - 3191; Metazoa - 1512; Fungi - 548; Plants - 472; Viruses - 0; Other Eukaryotes - 2781 (source: NCBI BLink). & (p56521|hdac_maize : 506.0) Probable histone deacetylase (RPD3 homolog) - Zea mays (Maize) & (reliability: 1274.0) &  (original description: no original description)","protein_coding"
"Kfl00638_0060","kfl00638_0060_v1.1","Klebsormidium nitens","(at4g38130 : 681.0) Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7.  Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.; histone deacetylase 1 (HD1); CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 6 (TAIR:AT5G63110.1); Has 8759 Blast hits to 8549 proteins in 1452 species: Archae - 219; Bacteria - 3192; Metazoa - 1525; Fungi - 536; Plants - 478; Viruses - 0; Other Eukaryotes - 2809 (source: NCBI BLink). & (p56521|hdac_maize : 667.0) Probable histone deacetylase (RPD3 homolog) - Zea mays (Maize) & (reliability: 1362.0) &  (original description: no original description)","protein_coding"
"LOC_Os01g40400","No alias","Oryza sativa","histone deacetylase 19, putative, expressed","protein_coding"
"LOC_Os02g12350","No alias","Oryza sativa","histone deacetylase, putative, expressed","protein_coding"
"LOC_Os02g12380","No alias","Oryza sativa","histone deacetylase, putative, expressed","protein_coding"
"LOC_Os04g33480","No alias","Oryza sativa","histone deacetylase, putative, expressed","protein_coding"
"LOC_Os06g38470","No alias","Oryza sativa","histone deacetylase 19, putative, expressed","protein_coding"
"LOC_Os08g25570","No alias","Oryza sativa","histone deacetylase, putative, expressed","protein_coding"
"LOC_Os11g09370","No alias","Oryza sativa","histone deacetylase 19, putative, expressed","protein_coding"
"MA_10427274g0010","No alias","Picea abies","(at5g63110 : 588.0) RPD3-like histone deacetylase.  HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.; histone deacetylase 6 (HDA6); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: response to salt stress, gene silencing, posttranscriptional gene silencing, response to abscisic acid stimulus, histone deacetylation; LOCATED IN: nucleus, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 1 (TAIR:AT4G38130.1); Has 8759 Blast hits to 8549 proteins in 1444 species: Archae - 221; Bacteria - 3162; Metazoa - 1525; Fungi - 546; Plants - 480; Viruses - 0; Other Eukaryotes - 2825 (source: NCBI BLink). & (p56521|hdac_maize : 539.0) Probable histone deacetylase (RPD3 homolog) - Zea mays (Maize) & (reliability: 1176.0) &  (original description: no original description)","protein_coding"
"MA_4299g0010","No alias","Picea abies","(at4g38130 : 609.0) Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7.  Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.; histone deacetylase 1 (HD1); CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 6 (TAIR:AT5G63110.1); Has 8759 Blast hits to 8549 proteins in 1452 species: Archae - 219; Bacteria - 3192; Metazoa - 1525; Fungi - 536; Plants - 478; Viruses - 0; Other Eukaryotes - 2809 (source: NCBI BLink). & (p56521|hdac_maize : 572.0) Probable histone deacetylase (RPD3 homolog) - Zea mays (Maize) & (reliability: 1218.0) &  (original description: no original description)","protein_coding"
"MA_9079g0010","No alias","Picea abies","(at3g44680 : 356.0) Class I RPD3 type protein; histone deacetylase 9 (HDA9); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 1 (TAIR:AT4G38130.1); Has 8723 Blast hits to 8511 proteins in 1453 species: Archae - 219; Bacteria - 3191; Metazoa - 1512; Fungi - 548; Plants - 472; Viruses - 0; Other Eukaryotes - 2781 (source: NCBI BLink). & (p56521|hdac_maize : 251.0) Probable histone deacetylase (RPD3 homolog) - Zea mays (Maize) & (reliability: 712.0) &  (original description: no original description)","protein_coding"
"Mp1g29190.1","No alias","Marchantia polymorpha","class-I histone deacetylase. deacetylase component HDA19 of SNL-HDA19 histone deacetylase complex","protein_coding"
"Mp2g19190.1","No alias","Marchantia polymorpha","class-I histone deacetylase. component HDA9 of HDA9-PWR deacetylation complex","protein_coding"
"Potri.001G460000","No alias","Populus trichocarpa","histone deacetylase 9","protein_coding"
"Potri.004G209800","No alias","Populus trichocarpa","histone deacetylase 1","protein_coding"
"Potri.009G170700","No alias","Populus trichocarpa","histone deacetylase 1","protein_coding"
"Potri.012G083800","No alias","Populus trichocarpa","histone deacetylase 6","protein_coding"
"Potri.015G082500","No alias","Populus trichocarpa","histone deacetylase 6","protein_coding"
"Pp1s180_68V6","No alias","Physcomitrella patens","histone deacetylase","protein_coding"
"Pp1s223_52V6","No alias","Physcomitrella patens","histone deacetylase","protein_coding"
"Pp1s351_29V6","No alias","Physcomitrella patens","histone deacetylase","protein_coding"
"PSME_00009611-RA","No alias","Pseudotsuga menziesii","(at4g38130 : 703.0) Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7.  Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.; histone deacetylase 1 (HD1); CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 6 (TAIR:AT5G63110.1); Has 8759 Blast hits to 8549 proteins in 1452 species: Archae - 219; Bacteria - 3192; Metazoa - 1525; Fungi - 536; Plants - 478; Viruses - 0; Other Eukaryotes - 2809 (source: NCBI BLink). & (p56521|hdac_maize : 664.0) Probable histone deacetylase (RPD3 homolog) - Zea mays (Maize) & (reliability: 1406.0) &  (original description: no original description)","protein_coding"
"PSME_00011638-RA","No alias","Pseudotsuga menziesii","(at3g44680 : 437.0) Class I RPD3 type protein; histone deacetylase 9 (HDA9); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 1 (TAIR:AT4G38130.1); Has 8723 Blast hits to 8511 proteins in 1453 species: Archae - 219; Bacteria - 3191; Metazoa - 1512; Fungi - 548; Plants - 472; Viruses - 0; Other Eukaryotes - 2781 (source: NCBI BLink). & (p56521|hdac_maize : 330.0) Probable histone deacetylase (RPD3 homolog) - Zea mays (Maize) & (reliability: 874.0) &  (original description: no original description)","protein_coding"
"PSME_00034269-RA","No alias","Pseudotsuga menziesii","(at4g38130 : 689.0) Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7.  Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Plant lines expressing an RNAi construct targeted against HDA19 shows some resistance to agrobacterium-mediated root transformation.; histone deacetylase 1 (HD1); CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 6 (TAIR:AT5G63110.1); Has 8759 Blast hits to 8549 proteins in 1452 species: Archae - 219; Bacteria - 3192; Metazoa - 1525; Fungi - 536; Plants - 478; Viruses - 0; Other Eukaryotes - 2809 (source: NCBI BLink). & (p56521|hdac_maize : 651.0) Probable histone deacetylase (RPD3 homolog) - Zea mays (Maize) & (reliability: 1378.0) &  (original description: no original description)","protein_coding"
"PSME_00035201-RA","No alias","Pseudotsuga menziesii","(at3g44680 : 363.0) Class I RPD3 type protein; histone deacetylase 9 (HDA9); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 1 (TAIR:AT4G38130.1); Has 8723 Blast hits to 8511 proteins in 1453 species: Archae - 219; Bacteria - 3191; Metazoa - 1512; Fungi - 548; Plants - 472; Viruses - 0; Other Eukaryotes - 2781 (source: NCBI BLink). & (p56521|hdac_maize : 229.0) Probable histone deacetylase (RPD3 homolog) - Zea mays (Maize) & (reliability: 726.0) &  (original description: no original description)","protein_coding"
"PSME_00041389-RA","No alias","Pseudotsuga menziesii","(at3g44680 : 426.0) Class I RPD3 type protein; histone deacetylase 9 (HDA9); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 1 (TAIR:AT4G38130.1); Has 8723 Blast hits to 8511 proteins in 1453 species: Archae - 219; Bacteria - 3191; Metazoa - 1512; Fungi - 548; Plants - 472; Viruses - 0; Other Eukaryotes - 2781 (source: NCBI BLink). & (p56521|hdac_maize : 319.0) Probable histone deacetylase (RPD3 homolog) - Zea mays (Maize) & (reliability: 852.0) &  (original description: no original description)","protein_coding"
"PSME_00042702-RA","No alias","Pseudotsuga menziesii","(at3g44680 : 341.0) Class I RPD3 type protein; histone deacetylase 9 (HDA9); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 1 (TAIR:AT4G38130.1); Has 8723 Blast hits to 8511 proteins in 1453 species: Archae - 219; Bacteria - 3191; Metazoa - 1512; Fungi - 548; Plants - 472; Viruses - 0; Other Eukaryotes - 2781 (source: NCBI BLink). & (p56521|hdac_maize : 242.0) Probable histone deacetylase (RPD3 homolog) - Zea mays (Maize) & (reliability: 682.0) &  (original description: no original description)","protein_coding"
"PSME_00048616-RA","No alias","Pseudotsuga menziesii","(at5g63110 : 629.0) RPD3-like histone deacetylase.  HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.; histone deacetylase 6 (HDA6); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: response to salt stress, gene silencing, posttranscriptional gene silencing, response to abscisic acid stimulus, histone deacetylation; LOCATED IN: nucleus, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase (InterPro:IPR003084), Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 1 (TAIR:AT4G38130.1); Has 8759 Blast hits to 8549 proteins in 1444 species: Archae - 221; Bacteria - 3162; Metazoa - 1525; Fungi - 546; Plants - 480; Viruses - 0; Other Eukaryotes - 2825 (source: NCBI BLink). & (p56521|hdac_maize : 599.0) Probable histone deacetylase (RPD3 homolog) - Zea mays (Maize) & (reliability: 1258.0) &  (original description: no original description)","protein_coding"
"Seita.1G037700.1","No alias","Setaria italica ","deacetylase component *(HDA19) of SNL-HDA19 histone deacetylase complex & EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & histone deacetylase *(HDA8)","protein_coding"
"Seita.4G231000.1","No alias","Setaria italica ","deacetylase component *(HDA19) of SNL-HDA19 histone deacetylase complex & EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & histone deacetylase *(HDA8)","protein_coding"
"Seita.5G190100.1","No alias","Setaria italica ","EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & histone deacetylase *(HDA8)","protein_coding"
"Seita.5G255900.1","No alias","Setaria italica ","histone deacetylase *(HDA8)","protein_coding"
"Seita.6G118400.1","No alias","Setaria italica ","deacetylase component *(HDA19) of SNL-HDA19 histone deacetylase complex & EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & component *(HDA6) of histone deacetylation complex & histone deacetylase *(HDA8)","protein_coding"
"Seita.7G088900.1","No alias","Setaria italica ","deacetylase component *(HDA9) of HDA9-PWR deacetylation complex & EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & histone deacetylase *(HDA8)","protein_coding"
"Sobic.003G200400.1","No alias","Sorghum bicolor ","EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & histone deacetylase *(HDA8)","protein_coding"
"Sobic.004G091200.1","No alias","Sorghum bicolor ","deacetylase component *(HDA19) of SNL-HDA19 histone deacetylase complex & EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & histone deacetylase *(HDA8)","protein_coding"
"Sobic.006G067600.1","No alias","Sorghum bicolor ","deacetylase component *(HDA9) of HDA9-PWR deacetylation complex & EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & histone deacetylase *(HDA8)","protein_coding"
"Sobic.007G114000.1","No alias","Sorghum bicolor ","deacetylase component *(HDA19) of SNL-HDA19 histone deacetylase complex & EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & component *(HDA6) of histone deacetylation complex & histone deacetylase *(HDA8)","protein_coding"
"Sobic.010G176300.1","No alias","Sorghum bicolor ","deacetylase component *(HDA19) of SNL-HDA19 histone deacetylase complex & EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & histone deacetylase *(HDA8)","protein_coding"
"Solyc03g112410","No alias","Solanum lycopersicum","Histone deacetylase (AHRD V3.3 *** K4BK95_SOLLC)","protein_coding"
"Solyc06g071680","No alias","Solanum lycopersicum","Histone deacetylase (AHRD V3.3 *** K4C8P0_SOLLC)","protein_coding"
"Solyc09g091440","No alias","Solanum lycopersicum","Histone deacetylase (AHRD V3.3 *** K4CWH0_SOLLC)","protein_coding"
"Solyc11g067020","No alias","Solanum lycopersicum","Histone deacetylase (AHRD V3.3 *** A0A0K9PTU8_ZOSMR)","protein_coding"
"Sopen03g031490","No alias","Solanum pennellii","Histone deacetylase domain","protein_coding"
"Sopen06g027990","No alias","Solanum pennellii","Histone deacetylase domain","protein_coding"
"Sopen09g034370","No alias","Solanum pennellii","Histone deacetylase domain","protein_coding"
"Sopen11g026740","No alias","Solanum pennellii","Histone deacetylase domain","protein_coding"