"sequence_id","alias","species","description","type"
"137715","No alias","Selaginella moellendorffii ","plastid-encoded CLP P","protein_coding"
"148310","No alias","Selaginella moellendorffii ","CLP protease proteolytic subunit 2","protein_coding"
"91162","No alias","Selaginella moellendorffii ","CLP protease proteolytic subunit 2","protein_coding"
"A4A49_13239","No alias","Nicotiana attenuata","atp-dependent clp protease proteolytic subunit-related protein 2, chloroplastic","protein_coding"
"A4A49_20531","No alias","Nicotiana attenuata","atp-dependent clp protease proteolytic subunit-related protein 2, chloroplastic","protein_coding"
"A4A49_20533","No alias","Nicotiana attenuata","atp-dependent clp protease proteolytic subunit-related protein 2, chloroplastic","protein_coding"
"A4A49_57412","No alias","Nicotiana attenuata","atp-dependent clp protease proteolytic subunit-related protein 2, chloroplastic","protein_coding"
"At1g12410","No alias","Arabidopsis thaliana","ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ36]","protein_coding"
"Atcg00670","No alias","Arabidopsis thaliana","plastid-encoded CLP P [Source:TAIR;Acc:ATCG00670]","protein_coding"
"Bradi1g05743","No alias","Brachypodium distachyon","plastid-encoded CLP P","protein_coding"
"Bradi1g05750","No alias","Brachypodium distachyon","plastid-encoded CLP P","protein_coding"
"Bradi1g27715","No alias","Brachypodium distachyon","plastid-encoded CLP P","protein_coding"
"Bradi1g51530","No alias","Brachypodium distachyon","CLP protease proteolytic subunit 2","protein_coding"
"Bradi5g23857","No alias","Brachypodium distachyon","plastid-encoded CLP P","protein_coding"
"Brara.F00856.1","No alias","Brassica rapa","proteolytic component *(ClpP2) of mitochondrion Clp-type protease complex","protein_coding"
"Brara.I05116.1","No alias","Brassica rapa","proteolytic component *(ClpP2) of mitochondrion Clp-type protease complex","protein_coding"
"Cre16.g682900","No alias","Chlamydomonas reinhardtii","CLP protease proteolytic subunit 2","protein_coding"
"evm.model.contig_2090.30","No alias","Porphyridium purpureum","(p56317|clpp_chlvu : 257.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (atcg00670 : 207.0) Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome.  Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001).; plastid-encoded CLP P (PCLPP); FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 2 (TAIR:AT1G12410.1). & (reliability: 414.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3551.2","No alias","Porphyridium purpureum","(p56317|clpp_chlvu : 157.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (at1g12410 : 146.0) Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; CLP protease proteolytic subunit 2 (CLP2); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: plastid-encoded CLP P (TAIR:ATCG00670.1); Has 13082 Blast hits to 13064 proteins in 2999 species: Archae - 2; Bacteria - 8275; Metazoa - 145; Fungi - 81; Plants - 1076; Viruses - 67; Other Eukaryotes - 3436 (source: NCBI BLink). & (reliability: 270.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000842.6","No alias","Cyanophora paradoxa","(p56317|clpp_chlvu : 186.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (atcg00670 : 154.0) Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome.  Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001).; plastid-encoded CLP P (PCLPP); FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 2 (TAIR:AT1G12410.1). & (reliability: 308.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020563.155","No alias","Cyanophora paradoxa","(p56317|clpp_chlvu : 251.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (atcg00670 : 210.0) Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome.  Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001).; plastid-encoded CLP P (PCLPP); FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 2 (TAIR:AT1G12410.1). & (reliability: 420.0) &  (original description: no original description)","protein_coding"
"Glyma.05G053600","No alias","Glycine max","CLP protease proteolytic subunit 2","protein_coding"
"Glyma.17G136100","No alias","Glycine max","CLP protease proteolytic subunit 2","protein_coding"
"Glyma.18G132600","No alias","Glycine max","plastid-encoded CLP P","protein_coding"
"Glyma.20G048700","No alias","Glycine max","plastid-encoded CLP P","protein_coding"
"GRMZM2G145908","No alias","Zea mays","plastid-encoded CLP P","protein_coding"
"GRMZM2G148106","No alias","Zea mays","CLP protease proteolytic subunit 2","protein_coding"
"GRMZM2G376930","No alias","Zea mays","plastid-encoded CLP P","protein_coding"
"GRMZM2G442064","No alias","Zea mays","plastid-encoded CLP P","protein_coding"
"GRMZM2G448161","No alias","Zea mays","plastid-encoded CLP P","protein_coding"
"GRMZM5G804708","No alias","Zea mays","plastid-encoded CLP P","protein_coding"
"HORVU0Hr1G026150.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase) & proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU0Hr1G027550.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase) & proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU0Hr1G029900.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase) & proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU0Hr1G036940.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase) & proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU0Hr1G037900.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase) & proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU3Hr1G044750.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase)","protein_coding"
"HORVU3Hr1G053800.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G042010.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G065060.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase) & proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU6Hr1G023010.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase) & proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU6Hr1G037220.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase) & proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU6Hr1G049380.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase) & proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU6Hr1G073400.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G017670.6","No alias","Hordeum vulgare","proteolytic component *(ClpP2) of mitochondrion Clp-type protease complex","protein_coding"
"HORVU7Hr1G065830.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase) & proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"Kfl00111_0180","kfl00111_0180_v1.1","Klebsormidium nitens","(at1g12410 : 279.0) Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; CLP protease proteolytic subunit 2 (CLP2); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: plastid-encoded CLP P (TAIR:ATCG00670.1); Has 13082 Blast hits to 13064 proteins in 2999 species: Archae - 2; Bacteria - 8275; Metazoa - 145; Fungi - 81; Plants - 1076; Viruses - 67; Other Eukaryotes - 3436 (source: NCBI BLink). & (p56317|clpp_chlvu : 197.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 558.0) &  (original description: no original description)","protein_coding"
"Kfl01813_0510","kfl01813_0510_v1.1","Klebsormidium nitens","(q85fj8|clpp_adica : 288.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Adiantum capillus-veneris (Maidenhair fern) & (atcg00670 : 251.0) Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome.  Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001).; plastid-encoded CLP P (PCLPP); FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 2 (TAIR:AT1G12410.1). & (reliability: 502.0) &  (original description: no original description)","protein_coding"
"LOC_Os06g04530","No alias","Oryza sativa","OsClp9 - Putative Clp protease homologue, expressed","protein_coding"
"LOC_Os06g39712","No alias","Oryza sativa","OsClp10 - Putative Clp protease homologue, expressed","protein_coding"
"LOC_Os08g15270","No alias","Oryza sativa","ATP-dependent Clp protease proteolytic subunit, putative, expressed","protein_coding"
"LOC_Os10g21300","No alias","Oryza sativa","ATP-dependent Clp protease proteolytic subunit, putative, expressed","protein_coding"
"LOC_Os12g10590","No alias","Oryza sativa","OsClp13 - Putative Clp protease homologue, expressed","protein_coding"
"Mp8g18340.1","No alias","Marchantia polymorpha","proteolytic component ClpP2 of mitochondrion Clp-type protease complex","protein_coding"
"Mpzg01030.3","No alias","Marchantia polymorpha","proteolytic core component ClpP1/3-6 of chloroplast Clp-type protease complex","protein_coding"
"Potri.001G115900","No alias","Populus trichocarpa","CLP protease proteolytic subunit 2","protein_coding"
"Pp1s128_154V6","No alias","Physcomitrella patens","atp-dependent clp protease proteolytic subunit","protein_coding"
"Pp1s161_14V6","No alias","Physcomitrella patens","atp-dependent clp protease proteolytic subunit","protein_coding"
"Pp1s16_270V6","No alias","Physcomitrella patens","atp-dependent clp protease proteolytic","protein_coding"
"PSME_00007966-RA","No alias","Pseudotsuga menziesii","(q85x43|clpp_pinko : 231.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Pinus koraiensis (Korean pine) & (atcg00670 : 163.0) Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome.  Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001).; plastid-encoded CLP P (PCLPP); FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 2 (TAIR:AT1G12410.1). & (reliability: 326.0) &  (original description: no original description)","protein_coding"
"PSME_00008499-RA","No alias","Pseudotsuga menziesii","(q85x43|clpp_pinko : 331.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Pinus koraiensis (Korean pine) & (atcg00670 : 225.0) Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome.  Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001).; plastid-encoded CLP P (PCLPP); FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 2 (TAIR:AT1G12410.1). & (reliability: 450.0) &  (original description: no original description)","protein_coding"
"PSME_00027953-RA","No alias","Pseudotsuga menziesii","(at1g12410 : 236.0) Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; CLP protease proteolytic subunit 2 (CLP2); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: plastid-encoded CLP P (TAIR:ATCG00670.1); Has 13082 Blast hits to 13064 proteins in 2999 species: Archae - 2; Bacteria - 8275; Metazoa - 145; Fungi - 81; Plants - 1076; Viruses - 67; Other Eukaryotes - 3436 (source: NCBI BLink). & (p56317|clpp_chlvu : 139.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 472.0) &  (original description: no original description)","protein_coding"
"Seita.4G026100.1","No alias","Setaria italica ","proteolytic component *(ClpP2) of mitochondrion Clp-type protease complex","protein_coding"
"Seita.9G389300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.J013900.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Sobic.001G266000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.010G027200.1","No alias","Sorghum bicolor ","proteolytic component *(ClpP2) of mitochondrion Clp-type protease complex","protein_coding"
"Solyc01g007490","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc08g079620","No alias","Solanum lycopersicum","ATP-dependent Clp protease proteolytic subunit (AHRD V3.3 *** K4CNW2_SOLLC)","protein_coding"
"Solyc09g065790","No alias","Solanum lycopersicum","ATP-dependent Clp protease proteolytic subunit (AHRD V3.3 *** K4CUK5_SOLLC)","protein_coding"
"Sopen08g027970","No alias","Solanum pennellii","Clp protease","protein_coding"