"sequence_id","alias","species","description","type"
"109372","No alias","Selaginella moellendorffii ","Zinc finger (C3HC4-type RING finger) family protein","protein_coding"
"51852","No alias","Selaginella moellendorffii ","Zinc finger (C3HC4-type RING finger) family protein","protein_coding"
"A4A49_04218","No alias","Nicotiana attenuata","e3 ubiquitin-protein ligase orthrus 2","protein_coding"
"A4A49_12851","No alias","Nicotiana attenuata","e3 ubiquitin-protein ligase orthrus 2","protein_coding"
"AC191534.3_FG003","No alias","Zea mays","Zinc finger (C3HC4-type RING finger) family protein","protein_coding"
"At1g57800","No alias","Arabidopsis thaliana","zinc finger (C3HC4-type RING finger) family protein [Source:TAIR;Acc:AT1G57800]","protein_coding"
"At1g57820","No alias","Arabidopsis thaliana","E3 ubiquitin-protein ligase ORTHRUS 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYZ0]","protein_coding"
"At1g66040","No alias","Arabidopsis thaliana","Putative E3 ubiquitin-protein ligase ORTHRUS 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8E1]","protein_coding"
"At1g66050","No alias","Arabidopsis thaliana","E3 ubiquitin-protein ligase ORTHRUS 5 [Source:UniProtKB/Swiss-Prot;Acc:Q680I0]","protein_coding"
"At4g08590","No alias","Arabidopsis thaliana","E3 ubiquitin-protein ligase ORTHRUS-LIKE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q681I0]","protein_coding"
"At5g39550","No alias","Arabidopsis thaliana","E3 ubiquitin-protein ligase ORTHRUS 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKA7]","protein_coding"
"Bradi2g40000","No alias","Brachypodium distachyon","Zinc finger (C3HC4-type RING finger) family protein","protein_coding"
"Bradi4g38230","No alias","Brachypodium distachyon","Zinc finger (C3HC4-type RING finger) family protein","protein_coding"
"Brara.G02568.1","No alias","Brassica rapa","regulatory E3 ubiquitin ligase (ORTH/VIM) of RNA-independent DNA methylation","protein_coding"
"Brara.I04436.1","No alias","Brassica rapa","regulatory E3 ubiquitin ligase (ORTH/VIM) of RNA-independent DNA methylation","protein_coding"
"Brara.K00794.1","No alias","Brassica rapa","regulatory E3 ubiquitin ligase (ORTH/VIM) of RNA-independent DNA methylation","protein_coding"
"Cre03.g163850","No alias","Chlamydomonas reinhardtii","Zinc finger (C3HC4-type RING finger) family protein","protein_coding"
"evm.model.tig00001024.15","No alias","Cyanophora paradoxa","(at1g57820 : 133.0) Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro.  The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.; VARIANT IN METHYLATION 1 (VIM1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SRA-YDG (InterPro:IPR003105), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G57800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 256.0) &  (original description: no original description)","protein_coding"
"Glyma.02G309100","No alias","Glycine max","Zinc finger (C3HC4-type RING finger) family protein","protein_coding"
"Glyma.12G001300","No alias","Glycine max","Zinc finger (C3HC4-type RING finger) family protein","protein_coding"
"Glyma.14G003700","No alias","Glycine max","Zinc finger (C3HC4-type RING finger) family protein","protein_coding"
"GRMZM2G339151","No alias","Zea mays","Zinc finger (C3HC4-type RING finger) family protein","protein_coding"
"GRMZM2G461447","No alias","Zea mays","Zinc finger (C3HC4-type RING finger) family protein","protein_coding"
"HORVU1Hr1G000520.5","No alias","Hordeum vulgare","regulatory E3 ubiquitin ligase (ORTH/VIM) of RNA-independent DNA methylation","protein_coding"
"Kfl00072_0060","kfl00072_0060_v1.1, kfl00072_0060_v1.1","Klebsormidium nitens","(at1g57820 : 631.0) Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro.  The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.; VARIANT IN METHYLATION 1 (VIM1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SRA-YDG (InterPro:IPR003105), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G57800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1262.0) &  (original description: no original description)","protein_coding"
"LOC_Os04g22240","No alias","Oryza sativa","zinc finger, C3HC4 type domain containing protein, expressed","protein_coding"
"LOC_Os05g01230","No alias","Oryza sativa","zinc finger, C3HC4 type domain containing protein, expressed","protein_coding"
"MA_10432100g0020","No alias","Picea abies","(at1g57820 : 536.0) Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro.  The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.; VARIANT IN METHYLATION 1 (VIM1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SRA-YDG (InterPro:IPR003105), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G57800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1072.0) &  (original description: no original description)","protein_coding"
"Mp1g04780.1","No alias","Marchantia polymorpha","E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana (sp|q8vyz0|orth2_arath : 612.0)","protein_coding"
"Mp1g28470.1","No alias","Marchantia polymorpha","E3 ubiquitin-protein ligase ORTHRUS 3 OS=Arabidopsis thaliana (sp|q9fvs2|orth3_arath : 248.0)","protein_coding"
"Potri.001G067700","No alias","Populus trichocarpa","Zinc finger (C3HC4-type RING finger) family protein","protein_coding"
"Potri.003G162400","No alias","Populus trichocarpa","Zinc finger (C3HC4-type RING finger) family protein","protein_coding"
"Pp1s381_35V6","No alias","Physcomitrella patens","zinc finger","protein_coding"
"Pp1s47_310V6","No alias","Physcomitrella patens","zinc finger","protein_coding"
"PSME_00024386-RA","No alias","Pseudotsuga menziesii","(at1g57820 : 724.0) Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro.  The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.; VARIANT IN METHYLATION 1 (VIM1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SRA-YDG (InterPro:IPR003105), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G57800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1338.0) &  (original description: no original description)","protein_coding"
"Seita.3G090000.1","No alias","Setaria italica ","regulatory E3 ubiquitin ligase (ORTH/VIM) of RNA-independent DNA methylation","protein_coding"
"Seita.3G115400.1","No alias","Setaria italica ","regulatory E3 ubiquitin ligase (ORTH/VIM) of RNA-independent DNA methylation","protein_coding"
"Sobic.002G101200.1","No alias","Sorghum bicolor ","regulatory E3 ubiquitin ligase (ORTH/VIM) of RNA-independent DNA methylation","protein_coding"
"Sobic.009G001200.1","No alias","Sorghum bicolor ","regulatory E3 ubiquitin ligase (ORTH/VIM) of RNA-independent DNA methylation","protein_coding"
"Solyc05g023670","No alias","Solanum lycopersicum","E3 ubiquitin-protein ligase ORTHRUS 2 (AHRD V3.3 *-* A0A199VGS6_ANACO)","protein_coding"
"Solyc05g023680","No alias","Solanum lycopersicum","RING-finger E3 ubiquitin ligase, putative (AHRD V3.3 *** A0A072VDM7_MEDTR)","protein_coding"
"Sopen05g018200","No alias","Solanum pennellii","SAD/SRA domain","protein_coding"
"Sopen05g018290","No alias","Solanum pennellii","SAD/SRA domain","protein_coding"