"sequence_id","alias","species","description","type" "100947","No alias","Selaginella moellendorffii ","Nodulin MtN3 family protein","protein_coding" "101095","No alias","Selaginella moellendorffii ","S-domain-2 5","protein_coding" "107394","No alias","Selaginella moellendorffii ","Subtilisin-like serine endopeptidase family protein","protein_coding" "109908","No alias","Selaginella moellendorffii ","Pentatricopeptide repeat (PPR-like) superfamily protein","protein_coding" "111910","No alias","Selaginella moellendorffii ","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding" "112999","No alias","Selaginella moellendorffii ","Uncharacterised conserved protein UCP015417, vWA","protein_coding" "114611","No alias","Selaginella moellendorffii ","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding" "115332","No alias","Selaginella moellendorffii ","cytochrome P450, family 71, subfamily A, polypeptide 22","protein_coding" "121544","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding" "128002","No alias","Selaginella moellendorffii ","chloroplastic NIFS-like cysteine desulfurase","protein_coding" "128595","No alias","Selaginella moellendorffii ","Leucine-rich receptor-like protein kinase family protein","protein_coding" "133460","No alias","Selaginella moellendorffii ","UDP-Glycosyltransferase superfamily protein","protein_coding" "134708","No alias","Selaginella moellendorffii ","NAD(P)-binding Rossmann-fold superfamily protein","protein_coding" "15491","No alias","Selaginella moellendorffii ","UDP-Glycosyltransferase superfamily protein","protein_coding" "16166","No alias","Selaginella moellendorffii ","CHASE domain containing histidine kinase protein","protein_coding" "16449","No alias","Selaginella moellendorffii ","CYCLIN D1;1","protein_coding" "18726","No alias","Selaginella moellendorffii ","ribosomal protein S10","protein_coding" "21372","No alias","Selaginella moellendorffii ","BRI1-like 3","protein_coding" "26835","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "27276","No alias","Selaginella moellendorffii ","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein","protein_coding" "28600","No alias","Selaginella moellendorffii ","Thiamine pyrophosphate dependent pyruvate decarboxylase family protein","protein_coding" "39384","No alias","Selaginella moellendorffii ","heat shock transcription factor A1D","protein_coding" "402201","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "403068","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "404402","No alias","Selaginella moellendorffii ","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding" "404748","No alias","Selaginella moellendorffii ","ubiquitin conjugating enzyme 8","protein_coding" "405740","No alias","Selaginella moellendorffii ","Calcineurin-like metallo-phosphoesterase superfamily protein","protein_coding" "405852","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "406431","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "406843","No alias","Selaginella moellendorffii ","Metallopeptidase M24 family protein","protein_coding" "407850","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "409526","No alias","Selaginella moellendorffii ","purple acid phosphatase 9","protein_coding" "409625","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "409744","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "410701","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "410924","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "411531","No alias","Selaginella moellendorffii ","GDSL-like Lipase/Acylhydrolase superfamily protein","protein_coding" "411646","No alias","Selaginella moellendorffii ","Integrase-type DNA-binding superfamily protein","protein_coding" "412101","No alias","Selaginella moellendorffii ","Protein of unknown function (DUF567)","protein_coding" "412303","No alias","Selaginella moellendorffii ","PLATZ transcription factor family protein","protein_coding" "412775","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "413021","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "413461","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "414481","No alias","Selaginella moellendorffii ","gibberellic acid methyltransferase 2","protein_coding" "414720","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "415345","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "416213","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "416265","No alias","Selaginella moellendorffii ","Protein of unknown function (DUF3754)","protein_coding" "417099","No alias","Selaginella moellendorffii ","GRAS family transcription factor","protein_coding" "418208","No alias","Selaginella moellendorffii ","domains rearranged methyltransferase 2","protein_coding" "418650","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "418707","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "419915","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "420091","No alias","Selaginella moellendorffii ","sodium:hydrogen antiporter 1","protein_coding" "420458","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "420736","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "421742","No alias","Selaginella moellendorffii ","cytochrome P450, family 709, subfamily B, polypeptide 2","protein_coding" "422140","No alias","Selaginella moellendorffii ","phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)","protein_coding" "422290","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "422322","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "422856","No alias","Selaginella moellendorffii ","DNA ligase IV","protein_coding" "423009","No alias","Selaginella moellendorffii ","DEA(D/H)-box RNA helicase family protein","protein_coding" "423067","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "423163","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "423222","No alias","Selaginella moellendorffii ","Protein kinase superfamily protein","protein_coding" "423657","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "423911","No alias","Selaginella moellendorffii ","WEE1 kinase homolog","protein_coding" "424098","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "424128","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "424397","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "424787","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "425299","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "426950","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "428483","No alias","Selaginella moellendorffii ","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding" "428950","No alias","Selaginella moellendorffii ","DNA-directed DNA polymerases","protein_coding" "429492","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "430401","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "430704","No alias","Selaginella moellendorffii ","Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein","protein_coding" "430862","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "431033","No alias","Selaginella moellendorffii ","Protein of unknown function (DUF674)","protein_coding" "431513","No alias","Selaginella moellendorffii ","Galactose oxidase/kelch repeat superfamily protein","protein_coding" "432570","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "441604","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "444398","No alias","Selaginella moellendorffii ","17.6 kDa class II heat shock protein","protein_coding" "49897","No alias","Selaginella moellendorffii ","Seven transmembrane MLO family protein","protein_coding" "5836","No alias","Selaginella moellendorffii ","Haloacid dehalogenase-like hydrolase (HAD) superfamily protein","protein_coding" "73134","No alias","Selaginella moellendorffii ","ethylene-responsive element binding protein","protein_coding" "76616","No alias","Selaginella moellendorffii ","Histone superfamily protein","protein_coding" "79269","No alias","Selaginella moellendorffii ","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding" "8199","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "84746","No alias","Selaginella moellendorffii ","pentatricopeptide (PPR) repeat-containing protein","protein_coding" "85878","No alias","Selaginella moellendorffii ","O-methyltransferase 1","protein_coding" "91894","No alias","Selaginella moellendorffii ","Protein kinase superfamily protein","protein_coding" "99767","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "A4A49_13553","No alias","Nicotiana attenuata","hypothetical protein","protein_coding" "At1g13690","No alias","Arabidopsis thaliana","ATE1 [Source:UniProtKB/TrEMBL;Acc:A0A178WKP3]","protein_coding" "At1g15250","No alias","Arabidopsis thaliana","60S ribosomal protein L37-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFH7]","protein_coding" "At1g15370","No alias","Arabidopsis thaliana","F9L1.32 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI32]","protein_coding" "At1g17560","No alias","Arabidopsis thaliana","50S ribosomal protein HLL, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JG5]","protein_coding" "At1g26910","No alias","Arabidopsis thaliana","60S ribosomal protein L10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08770]","protein_coding" "At1g54050","No alias","Arabidopsis thaliana","17.4 kDa class III heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9SYG1]","protein_coding" "At1g61990","No alias","Arabidopsis thaliana","At1g61990/F8K4_18 [Source:UniProtKB/TrEMBL;Acc:O80704]","protein_coding" "At1g71310","No alias","Arabidopsis thaliana","RAD52-1B.2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7H6]","protein_coding" "At1g77310","No alias","Arabidopsis thaliana","BEST Arabidopsis thaliana protein match is: wound-responsive family protein (TAIR:AT1G21610.1); Has 493 Blast hits to 482 proteins in 163 species: Archae - 0; Bacteria - 100; Metazoa - 172; Fungi - 66; Plants - 65; Viruses - 7; Other Eukaryotes - 83 /.../ce: NCBI BLink). [Source:TAIR;Acc:AT1G77310]","protein_coding" "At2g03090","No alias","Arabidopsis thaliana","EXPA15 [Source:UniProtKB/TrEMBL;Acc:A0A178VZP8]","protein_coding" "At2g25140","No alias","Arabidopsis thaliana","Chaperone protein ClpB4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VYJ7]","protein_coding" "At2g25210","No alias","Arabidopsis thaliana","Ribosomal protein L39 family protein [Source:TAIR;Acc:AT2G25210]","protein_coding" "At2g26660","No alias","Arabidopsis thaliana","SPX domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O48781]","protein_coding" "At2g27530","No alias","Arabidopsis thaliana","60S ribosomal protein L10a-2 [Source:UniProtKB/Swiss-Prot;Acc:P59230]","protein_coding" "At2g37860","No alias","Arabidopsis thaliana","Protein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]","protein_coding" "At3g03170","No alias","Arabidopsis thaliana","At3g03170 [Source:UniProtKB/TrEMBL;Acc:Q29PZ2]","protein_coding" "At3g04830","No alias","Arabidopsis thaliana","Contains similarity to O-linked GlcNAc transferases [Source:UniProtKB/TrEMBL;Acc:Q9CAU9]","protein_coding" "At3g05480","No alias","Arabidopsis thaliana","Cell cycle checkpoint control protein family [Source:UniProtKB/TrEMBL;Acc:F4J7B7]","protein_coding" "At3g06520","No alias","Arabidopsis thaliana","Agenet domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9C8Z3]","protein_coding" "At3g07230","No alias","Arabidopsis thaliana","At3g07230 [Source:UniProtKB/TrEMBL;Acc:Q9SFV3]","protein_coding" "At3g13350","No alias","Arabidopsis thaliana","High mobility group B protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT3]","protein_coding" "At3g15660","No alias","Arabidopsis thaliana","GRX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHP8]","protein_coding" "At3g16080","No alias","Arabidopsis thaliana","60S ribosomal protein L37-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEM8]","protein_coding" "At3g16990","No alias","Arabidopsis thaliana","Bifunctional TENA-E protein [Source:UniProtKB/Swiss-Prot;Acc:Q9ASY9]","protein_coding" "At3g18165","No alias","Arabidopsis thaliana","Pre-mRNA-splicing factor SPF27 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q949S9]","protein_coding" "At3g18310","No alias","Arabidopsis thaliana","TATA box-binding protein associated factor RNA polymerase I subunit C [Source:UniProtKB/TrEMBL;Acc:Q9LS59]","protein_coding" "At3g21465","No alias","Arabidopsis thaliana","Adenylyl cyclase [Source:UniProtKB/TrEMBL;Acc:F4IXL3]","protein_coding" "At3g21510","No alias","Arabidopsis thaliana","AHP1 [Source:UniProtKB/TrEMBL;Acc:A0A178V856]","protein_coding" "At3g22830","No alias","Arabidopsis thaliana","Heat stress transcription factor A-6b [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH8]","protein_coding" "At3g26360","No alias","Arabidopsis thaliana","Ribosomal protein S21 family protein [Source:UniProtKB/TrEMBL;Acc:F4JCI2]","protein_coding" "At3g27550","No alias","Arabidopsis thaliana","RNA-binding CRS1 / YhbY (CRM) domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS8]","protein_coding" "At3g52190","No alias","Arabidopsis thaliana","SEC12-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYE0]","protein_coding" "At3g52710","No alias","Arabidopsis thaliana","Uncharacterized protein At3g52710 [Source:UniProtKB/TrEMBL;Acc:Q9LXJ3]","protein_coding" "At3g53940","No alias","Arabidopsis thaliana","Mitochondrial substrate carrier family protein [Source:UniProtKB/TrEMBL;Acc:Q8W4M2]","protein_coding" "At4g01810","No alias","Arabidopsis thaliana","Sec23/Sec24 protein transport family protein [Source:UniProtKB/TrEMBL;Acc:Q84WV4]","protein_coding" "At4g02010","No alias","Arabidopsis thaliana","AT4g02010/T10M13_2 [Source:UniProtKB/TrEMBL;Acc:Q8L7V7]","protein_coding" "At4g03200","No alias","Arabidopsis thaliana","catalytics [Source:TAIR;Acc:AT4G03200]","protein_coding" "At4g04670","No alias","Arabidopsis thaliana","tRNA wybutosine-synthesizing protein 2/3/4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4K1]","protein_coding" "At4g25740","No alias","Arabidopsis thaliana","40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]","protein_coding" "At4g30230","No alias","Arabidopsis thaliana","Uncharacterized protein AT4g30230 [Source:UniProtKB/TrEMBL;Acc:Q9SUM1]","protein_coding" "At4g39380","No alias","Arabidopsis thaliana","BEST Arabidopsis thaliana protein match is: TSL-kinase interacting protein 1 (TAIR:AT2G36960.3); Has 80 Blast hits to 74 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 2 (source /.../ BLink). [Source:TAIR;Acc:AT4G39380]","protein_coding" "At5g03210","No alias","Arabidopsis thaliana","Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK16 [Source:UniProtKB/TrEMBL;Acc:Q9FYM8]","protein_coding" "At5g03740","No alias","Arabidopsis thaliana","HDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UP12]","protein_coding" "At5g11590","No alias","Arabidopsis thaliana","Dehydration-responsive element-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYD3]","protein_coding" "At5g14600","No alias","Arabidopsis thaliana","tRNA (adenine(58)-N(1))-methyltransferase [Source:UniProtKB/TrEMBL;Acc:Q84K50]","protein_coding" "At5g42370","No alias","Arabidopsis thaliana","Calcineurin-like metallo-phosphoesterase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K1J1]","protein_coding" "At5g43080","No alias","Arabidopsis thaliana","Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]","protein_coding" "At5g45600","No alias","Arabidopsis thaliana","Transcription initiation factor TFIID subunit 14b [Source:UniProtKB/Swiss-Prot;Acc:Q9FH40]","protein_coding" "At5g46690","No alias","Arabidopsis thaliana","Transcription factor bHLH71 [Source:UniProtKB/Swiss-Prot;Acc:Q56XR0]","protein_coding" "At5g48760","No alias","Arabidopsis thaliana","60S ribosomal protein L13a-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC0]","protein_coding" "At5g50130","No alias","Arabidopsis thaliana","NAD(P)-binding Rossmann-fold superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8RWK2]","protein_coding" "At5g54095","No alias","Arabidopsis thaliana","At5g54095 [Source:UniProtKB/TrEMBL;Acc:Q681J0]","protein_coding" "At5g56950","No alias","Arabidopsis thaliana","Nucleosome assembly protein 1;3 [Source:UniProtKB/Swiss-Prot;Acc:Q94K07]","protein_coding" "At5g60670","No alias","Arabidopsis thaliana","60S ribosomal protein L12-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF52]","protein_coding" "At5g61010","No alias","Arabidopsis thaliana","Exocyst complex component EXO70E2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNR3]","protein_coding" "At5g62040","No alias","Arabidopsis thaliana","Protein BROTHER of FT and TFL 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIT4]","protein_coding" "At5g67500","No alias","Arabidopsis thaliana","voltage dependent anion channel 2 [Source:TAIR;Acc:AT5G67500]","protein_coding" "At5g67510","No alias","Arabidopsis thaliana","60S ribosomal protein L26-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJX2]","protein_coding" "Bradi1g54787","No alias","Brachypodium distachyon","Chaperone DnaJ-domain superfamily protein","protein_coding" "Bradi2g26420","No alias","Brachypodium distachyon","TCP-1/cpn60 chaperonin family protein","protein_coding" "Bradi3g09490","No alias","Brachypodium distachyon","dual specificity protein phosphatase-related","protein_coding" "Bradi3g29240","No alias","Brachypodium distachyon","pentatricopeptide repeat 336","protein_coding" "Bradi4g06650","No alias","Brachypodium distachyon","Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein","protein_coding" "Bradi4g24767","No alias","Brachypodium distachyon","Autophagy-related protein 13","protein_coding" "Bradi5g04790","No alias","Brachypodium distachyon","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding" "Brara.A00868.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A01051.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A02197.1","No alias","Brassica rapa","component *(eL13) of large ribosomal-subunit (LSU) proteome","protein_coding" "Brara.A03778.1","No alias","Brassica rapa","component *(uS9) of small ribosomal-subunit (SSU) proteome","protein_coding" "Brara.A03819.1","No alias","Brassica rapa","EC_2.5 transferase transferring alkyl or aryl group, other than methyl group","protein_coding" "Brara.B01147.1","No alias","Brassica rapa","component *(eS4) of small ribosomal-subunit (SSU) proteome","protein_coding" "Brara.C00238.1","No alias","Brassica rapa","SSU processome assembly factor *(SWA1)","protein_coding" "Brara.C01007.1","No alias","Brassica rapa","HD2-type histone deacetylase *(HD2/HDT)","protein_coding" "Brara.C02044.1","No alias","Brassica rapa","component *(eIF3f) of eIF3 mRNA-to-PIC binding complex","protein_coding" "Brara.C02416.1","No alias","Brassica rapa","component *(RPP2) of large ribosomal-subunit (LSU) proteome","protein_coding" "Brara.C02926.1","No alias","Brassica rapa","translation ribosome recycling factor *(RRF)","protein_coding" "Brara.C03335.1","No alias","Brassica rapa","subunit A of DNA gyrase complex","protein_coding" "Brara.C04644.1","No alias","Brassica rapa","dihydroorotase *(PYR4)","protein_coding" "Brara.D00384.1","No alias","Brassica rapa","ribosome assembly factor *(eIF6))","protein_coding" "Brara.D00531.1","No alias","Brassica rapa","component *(uL11) of large ribosomal-subunit (LSU) proteome","protein_coding" "Brara.D00610.1","No alias","Brassica rapa","regulatory protein *(FRIENDLY) of mitochondrion division","protein_coding" "Brara.D01206.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.D01504.1","No alias","Brassica rapa","component *(eIF3b) of eIF3 mRNA-to-PIC binding complex","protein_coding" "Brara.D01547.1","No alias","Brassica rapa","regulatory protein *(BDR) involved in RNA polymerase-II transcription","protein_coding" "Brara.E00581.1","No alias","Brassica rapa","component *(eIF3f) of eIF3 mRNA-to-PIC binding complex","protein_coding" "Brara.E00783.1","No alias","Brassica rapa","plastidial ribonucleoprotein *(CP29)","protein_coding" "Brara.E00995.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.E01445.1","No alias","Brassica rapa","component *(mS78/mS79) of small mitoribosomal-subunit proteome","protein_coding" "Brara.E02483.1","No alias","Brassica rapa","rRNA processing factor involved in ITS2 rRNA removal *(APUM24)","protein_coding" "Brara.E03274.1","No alias","Brassica rapa","SSU processome assembly factor *(UTP10)","protein_coding" "Brara.F00361.1","No alias","Brassica rapa","mRNA poly-A-tail binding factor *(PABP)","protein_coding" "Brara.F00420.1","No alias","Brassica rapa","RNA editing factor *(OZ)","protein_coding" "Brara.F01795.1","No alias","Brassica rapa","component *(Toc75-III) of outer envelope TOC translocation system","protein_coding" "Brara.G00691.1","No alias","Brassica rapa","chaperone HSCA of mitochondrial ISC system transfer phase & chaperone component *(mtHSP70) of inner mitochondrion membrane TIM translocation system & chaperone *(mtHsc70))","protein_coding" "Brara.G01184.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.G01591.1","No alias","Brassica rapa","plastidial ribonucleoprotein *(CP29)","protein_coding" "Brara.G01811.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.G02435.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.H00871.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.H01073.1","No alias","Brassica rapa","core adaptor component *(DDB1) of CUL4-based E3 ubiquitin ligase complexes & core adaptor component *(DDB1) of CUL4-based E3 ubiquitin ligase complexes","protein_coding" "Brara.H01568.1","No alias","Brassica rapa","methyltransferase component *(Nop1/fibrillarin) of snoRNP rRNA methylation complex","protein_coding" "Brara.H02335.1","No alias","Brassica rapa","component *(RPP25/POP6) or RPP20/POP7 of RNA-dependent RNase P complex","protein_coding" "Brara.I00110.1","No alias","Brassica rapa","pre-60S ribosomal subunit assembly factor *(RPF1)","protein_coding" "Brara.I00465.1","No alias","Brassica rapa","regulatory GTPase (MIRO) of mitochondrion fission","protein_coding" "Brara.I01400.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.I03660.1","No alias","Brassica rapa","component *(eL36) of large ribosomal-subunit (LSU) proteome","protein_coding" "Brara.I05302.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.I05411.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J00462.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J01563.1","No alias","Brassica rapa","rRNA processing factor *(RRP1)","protein_coding" "Brara.J02009.1","No alias","Brassica rapa","component *(TRM61) of TRM61-TRM6 tRNA adenosine-methyltransferase complex & EC_2.1 transferase transferring one-carbon group","protein_coding" "Brara.K00891.1","No alias","Brassica rapa","component *(eL28) of large ribosomal-subunit (LSU) proteome","protein_coding" "Cre01.g000600","No alias","Chlamydomonas reinhardtii","WD-40 repeat family protein / notchless protein, putative","protein_coding" "Cre01.g009950","No alias","Chlamydomonas reinhardtii","nucleolar essential protein-related","protein_coding" "Cre01.g070567","No alias","Chlamydomonas reinhardtii","DNA binding;DNA-directed RNA polymerases","protein_coding" "Cre02.g077300","No alias","Chlamydomonas reinhardtii","fibrillarin 2","protein_coding" "Cre02.g096900","No alias","Chlamydomonas reinhardtii","splicing endonuclease 1","protein_coding" "Cre02.g110500","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre02.g113250","No alias","Chlamydomonas reinhardtii","transducin family protein / WD-40 repeat family protein","protein_coding" "Cre02.g117900","No alias","Chlamydomonas reinhardtii","RNA helicase, ATP-dependent, SK12/DOB1 protein","protein_coding" "Cre02.g145000","No alias","Chlamydomonas reinhardtii","ribosome-binding factor A family protein","protein_coding" "Cre03.g144444","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre03.g145907","No alias","Chlamydomonas reinhardtii","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding" "Cre03.g161363","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre03.g170750","No alias","Chlamydomonas reinhardtii","Alpha-L RNA-binding motif/Ribosomal protein S4 family protein","protein_coding" "Cre03.g172950","No alias","Chlamydomonas reinhardtii","homologue of NAP57","protein_coding" "Cre03.g182650","No alias","Chlamydomonas reinhardtii","Phospholipid/glycerol acyltransferase family protein","protein_coding" "Cre03.g183600","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre03.g184750","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre03.g198400","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre03.g204750","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre04.g216000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre05.g234651","No alias","Chlamydomonas reinhardtii","Galactose mutarotase-like superfamily protein","protein_coding" "Cre05.g238950","No alias","Chlamydomonas reinhardtii","tRNA/rRNA methyltransferase (SpoU) family protein","protein_coding" "Cre05.g242900","No alias","Chlamydomonas reinhardtii","Sas10/Utp3/C1D family","protein_coding" "Cre05.g244236","No alias","Chlamydomonas reinhardtii","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding" "Cre06.g252350","No alias","Chlamydomonas reinhardtii","Protein of unknown function (DUF3531)","protein_coding" "Cre06.g261700","No alias","Chlamydomonas reinhardtii","Ribosomal protein L10 family protein","protein_coding" "Cre06.g267000","No alias","Chlamydomonas reinhardtii","transferases;folic acid binding","protein_coding" "Cre06.g273150","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre06.g275100","No alias","Chlamydomonas reinhardtii","nucleolin like 2","protein_coding" "Cre06.g278175","No alias","Chlamydomonas reinhardtii","Transducin/WD40 repeat-like superfamily protein","protein_coding" "Cre06.g292350","No alias","Chlamydomonas reinhardtii","Amino acid permease family protein","protein_coding" "Cre06.g292600","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre06.g302650","No alias","Chlamydomonas reinhardtii","FtsJ-like methyltransferase family protein","protein_coding" "Cre07.g314950","No alias","Chlamydomonas reinhardtii","DNA binding;DNA-directed RNA polymerases","protein_coding" "Cre07.g318750","No alias","Chlamydomonas reinhardtii","phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)","protein_coding" "Cre07.g330350","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre07.g332050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre07.g341250","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre07.g347200","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre07.g348500","No alias","Chlamydomonas reinhardtii","Nucleic acid-binding, OB-fold-like protein","protein_coding" "Cre07.g354100","No alias","Chlamydomonas reinhardtii","radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein","protein_coding" "Cre08.g373650","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre09.g388500","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre09.g394550","No alias","Chlamydomonas reinhardtii","Phosphoribosyltransferase family protein","protein_coding" "Cre09.g394584","No alias","Chlamydomonas reinhardtii","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding" "Cre09.g395880","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre09.g398550","No alias","Chlamydomonas reinhardtii","cell division cycle 48C","protein_coding" "Cre09.g400367","No alias","Chlamydomonas reinhardtii","RNA cyclase family protein","protein_coding" "Cre09.g413750","No alias","Chlamydomonas reinhardtii","HOPW1-1-interacting 1","protein_coding" "Cre10.g418000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre10.g422000","No alias","Chlamydomonas reinhardtii","N2,N2-dimethylguanosine tRNA methyltransferase","protein_coding" "Cre10.g423700","No alias","Chlamydomonas reinhardtii","sensitivity to red light reduced protein (SRR1)","protein_coding" "Cre10.g433100","No alias","Chlamydomonas reinhardtii","GTP1/OBG family protein","protein_coding" "Cre10.g436600","No alias","Chlamydomonas reinhardtii","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding" "Cre10.g436650","No alias","Chlamydomonas reinhardtii","DEA(D/H)-box RNA helicase family protein","protein_coding" "Cre10.g439200","No alias","Chlamydomonas reinhardtii","Cytidine/deoxycytidylate deaminase family protein","protein_coding" "Cre10.g454650","No alias","Chlamydomonas reinhardtii","SIN-like family protein","protein_coding" "Cre10.g459600","No alias","Chlamydomonas reinhardtii","CCAAT-binding factor","protein_coding" "Cre10.g464050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre12.g484100","No alias","Chlamydomonas reinhardtii","RNApolymerase 14 kDa subunit","protein_coding" "Cre12.g485900","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre12.g499000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre12.g506900","No alias","Chlamydomonas reinhardtii","Pseudouridine synthase family protein","protein_coding" "Cre12.g519900","No alias","Chlamydomonas reinhardtii","acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases","protein_coding" "Cre12.g524950","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding" "Cre12.g536850","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre12.g543050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre12.g543100","No alias","Chlamydomonas reinhardtii","eukaryotic initiation factor 3 gamma subunit family protein","protein_coding" "Cre13.g567850","No alias","Chlamydomonas reinhardtii","H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein","protein_coding" "Cre13.g573300","No alias","Chlamydomonas reinhardtii","tRNA arginine adenosine deaminase","protein_coding" "Cre13.g581900","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre13.g582900","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre13.g602300","No alias","Chlamydomonas reinhardtii","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding" "Cre14.g613200","No alias","Chlamydomonas reinhardtii","plastid transcriptionally active 17","protein_coding" "Cre14.g613850","No alias","Chlamydomonas reinhardtii","ribonuclease II family protein","protein_coding" "Cre14.g615500","No alias","Chlamydomonas reinhardtii","glycoprotease 1","protein_coding" "Cre14.g615550","No alias","Chlamydomonas reinhardtii","triacylglycerol lipase-like 1","protein_coding" "Cre16.g657700","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre16.g670617","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre16.g673900","No alias","Chlamydomonas reinhardtii","RNA polymerase III subunit RPC82 family protein","protein_coding" "Cre16.g691215","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre17.g697624","No alias","Chlamydomonas reinhardtii","3\'-5\'-exoribonuclease family protein","protein_coding" "Cre17.g734628","No alias","Chlamydomonas reinhardtii","zinc finger (C2H2 type) family protein","protein_coding" "Cre19.g751197","No alias","Chlamydomonas reinhardtii","ARM repeat superfamily protein","protein_coding" "Cre50.g761447","No alias","Chlamydomonas reinhardtii","NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein","protein_coding" "evm.model.contig_2020.17","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2020.20","No alias","Porphyridium purpureum","(at1g34120 : 156.0) Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not act on I(1)P, I(1,4)P2, or phosphatidylinositol(4,5)P2.; inositol polyphosphate 5-phosphatase I (IP5PI); CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G71710.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 312.0) & (original description: no original description)","protein_coding" "evm.model.contig_2022.12","No alias","Porphyridium purpureum","(at3g45890 : 151.0) Encodes RUS1 (root UVB sensitive 1), a protein that contains DUF647 (domain of unknown function 647), a domain highly conserved in eukaryotes. The primary root of rus1 is hypersensitive to very low-fluence-rate (VLF) UVB.; ROOT UVB SENSITIVE 1 (RUS1); INVOLVED IN: response to UV-B, developmental process; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: lateral root, root apical meristem, callus, elongation zone, embryonic root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT1G13770.1); Has 458 Blast hits to 456 proteins in 133 species: Archae - 0; Bacteria - 2; Metazoa - 116; Fungi - 71; Plants - 198; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink). & (reliability: 302.0) & (original description: no original description)","protein_coding" "evm.model.contig_2031.2","No alias","Porphyridium purpureum","(at1g18360 : 83.6) alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G73480.1); Has 6456 Blast hits to 6448 proteins in 1759 species: Archae - 38; Bacteria - 4736; Metazoa - 147; Fungi - 149; Plants - 444; Viruses - 63; Other Eukaryotes - 879 (source: NCBI BLink). & (reliability: 167.2) & (original description: no original description)","protein_coding" "evm.model.contig_2036.13","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2038.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2044.28","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2046.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2048.9","No alias","Porphyridium purpureum","(at3g10050 : 96.7) first enzyme in the biosynthetic pathway of isoleucine; L-O-methylthreonine resistant 1 (OMR1); FUNCTIONS IN: L-threonine ammonia-lyase activity; INVOLVED IN: isoleucine biosynthetic process, threonine metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Threonine dehydratase I (InterPro:IPR005787), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Threonine dehydratase, C-terminal (InterPro:IPR001721), Serine/threonine dehydratase, pyridoxal-phosphate-binding site (InterPro:IPR000634); BEST Arabidopsis thaliana protein match is: serine racemase (TAIR:AT4G11640.1); Has 26917 Blast hits to 26860 proteins in 2759 species: Archae - 692; Bacteria - 18712; Metazoa - 552; Fungi - 889; Plants - 577; Viruses - 2; Other Eukaryotes - 5493 (source: NCBI BLink). & (q39469|thd1_cicar : 84.3) Threonine dehydratase biosynthetic, chloroplast precursor (EC 4.3.1.19) (Threonine deaminase) (TD) - Cicer arietinum (Chickpea) (Garbanzo) & (reliability: 178.8) & (original description: no original description)","protein_coding" "evm.model.contig_2051.15","No alias","Porphyridium purpureum","(at2g21470 : 315.0) Encodes one of the two subunits of the SUMO activation enzyme required during sumolation. Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein.; SUMO-activating enzyme 2 (SAE2); CONTAINS InterPro DOMAIN/s: Ubiquitin-activating enzyme repeat (InterPro:IPR000127), Ubiquitin-activating enzyme (InterPro:IPR019572), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: E1 C-terminal related 1 (TAIR:AT5G19180.1). & (p31251|ube12_wheat : 107.0) Ubiquitin-activating enzyme E1 2 - Triticum aestivum (Wheat) & (reliability: 630.0) & (original description: no original description)","protein_coding" "evm.model.contig_2054.17","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding" "evm.model.contig_2059.36","No alias","Porphyridium purpureum","(at4g11150 : 157.0) Encodes a vacuolar H+-ATPase subunit E isoform 1 which is required for Golgi organization and vacuole function in embryogenesis.; vacuolar ATP synthase subunit E1 (TUF); FUNCTIONS IN: proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: in 7 processes; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 18 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1/A1 complex, subunit E (InterPro:IPR002842); BEST Arabidopsis thaliana protein match is: vacuolar H+-ATPase subunit E isoform 3 (TAIR:AT1G64200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o23948|vate_goshi : 151.0) Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump E subunit) - Gossypium hirsutum (Upland cotton) & (reliability: 284.0) & (original description: no original description)","protein_coding" "evm.model.contig_2069.3","No alias","Porphyridium purpureum","(at1g59900 : 380.0) encodes the e1 alpha subunit of the pyruvate dehydrogenase complex (PDC); pyruvate dehydrogenase complex E1 alpha subunit (E1 ALPHA); FUNCTIONS IN: oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, pyruvate dehydrogenase (acetyl-transferring) activity; INVOLVED IN: response to cadmium ion, metabolic process; LOCATED IN: cytosol, mitochondrion, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrogenase, E1 component (InterPro:IPR001017), Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y (InterPro:IPR017597); BEST Arabidopsis thaliana protein match is: Thiamin diphosphate-binding fold (THDP-binding) superfamily protein (TAIR:AT1G24180.1); Has 9893 Blast hits to 9890 proteins in 1845 species: Archae - 125; Bacteria - 6023; Metazoa - 522; Fungi - 292; Plants - 213; Viruses - 0; Other Eukaryotes - 2718 (source: NCBI BLink). & (p52903|odpa_soltu : 374.0) Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial precursor (EC 1.2.4.1) (PDHE1-A) - Solanum tuberosum (Potato) & (reliability: 760.0) & (original description: no original description)","protein_coding" "evm.model.contig_2070.9","No alias","Porphyridium purpureum","(at4g17050 : 220.0) Encodes a protein with ureidoglycine aminohydrolase activity.; ureidoglycine aminohydrolase (UGLYAH); FUNCTIONS IN: ureidoglycine aminohydrolase activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: allantoin catabolic process, regulation of transcription; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cupin 2, conserved barrel (InterPro:IPR013096), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 440.0) & (original description: no original description)","protein_coding" "evm.model.contig_2073.3","No alias","Porphyridium purpureum","(at5g14600 : 179.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: tRNA (adenine-N1-)-methyltransferase activity; INVOLVED IN: tRNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: tRNA methyltransferase complex GCD14 subunit (InterPro:IPR014816); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 358.0) & (original description: no original description)","protein_coding" "evm.model.contig_2075.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2090.43","No alias","Porphyridium purpureum","(at4g25720 : 159.0) This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Enzymatic assays to test the function of this protein were performed using a truncated form of the protein lacking a signal peptide that is most similar to the AT4G25720.1 protein model.; glutaminyl cyclase (QC); FUNCTIONS IN: glutaminyl-peptide cyclotransferase activity, catalytic activity; INVOLVED IN: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine cyclotransferase (InterPro:IPR007788), Nitrous oxide reductase, N-terminal (InterPro:IPR011045); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 318.0) & (original description: no original description)","protein_coding" "evm.model.contig_2098.13","No alias","Porphyridium purpureum","(at5g52920 : 402.0) encodes a dominant chloroplast pyruvate kinase beta subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds. The mutant plant has wrinkled seeds, with a 50-70% reduction in seed fatty acid content.; plastidic pyruvate kinase beta subunit 1 (PKP-BETA1); FUNCTIONS IN: pyruvate kinase activity; INVOLVED IN: response to cadmium ion, glycolysis, seed development, fatty acid biosynthetic process, lipid metabolic process; LOCATED IN: mitochondrion, chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: plastidial pyruvate kinase 3 (TAIR:AT1G32440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q40546|kpyg_tobac : 384.0) Pyruvate kinase isozyme G, chloroplast precursor (EC 2.7.1.40) - Nicotiana tabacum (Common tobacco) & (reliability: 804.0) & (original description: no original description)","protein_coding" "evm.model.contig_2116.4","No alias","Porphyridium purpureum","(p27968|nia7_horvu : 516.0) Nitrate reductase [NAD(P)H] (EC 1.7.1.2) - Hordeum vulgare (Barley) & (at1g77760 : 499.0) Encodes the cytosolic minor isoform of nitrate reductase (NR). Involved in the first step of nitrate assimilation, it contributes about 15% of the nitrate reductase activity in shoots. Similar to molybdopterin oxidoreductases at the N-terminus, and to FAD/NAD-binding cytochrome reductases at the C-terminus. Cofactors: FAD, heme iron (cytochrome B-557), and molybdenum-pterin.; nitrate reductase 1 (NIA1); FUNCTIONS IN: nitrate reductase activity, protein binding; INVOLVED IN: nitric oxide biosynthetic process, nitrate assimilation, response to light stimulus; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5, heme-binding site (InterPro:IPR018506), Nitrate reductase NADH dependent (InterPro:IPR012137), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Immunoglobulin E-set (InterPro:IPR014756), Cytochrome b5 (InterPro:IPR001199), NADH:cytochrome b5 reductase (CBR) (InterPro:IPR001834), Oxidoreductase, molybdopterin-binding domain (InterPro:IPR000572), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Oxidoreductase, molybdopterin binding site (InterPro:IPR022407), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Eukaryotic molybdopterin oxidoreductase (InterPro:IPR008335), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), Moybdenum cofactor oxidoreductase, dimerisation (InterPro:IPR005066); BEST Arabidopsis thaliana protein match is: nitrate reductase 2 (TAIR:AT1G37130.1); Has 14813 Blast hits to 14437 proteins in 2198 species: Archae - 168; Bacteria - 6976; Metazoa - 1728; Fungi - 2215; Plants - 1479; Viruses - 3; Other Eukaryotes - 2244 (source: NCBI BLink). & (reliability: 998.0) & (original description: no original description)","protein_coding" "evm.model.contig_2122.21","No alias","Porphyridium purpureum","(at1g13820 : 172.0) alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G39220.1); Has 7432 Blast hits to 7419 proteins in 1219 species: Archae - 99; Bacteria - 5035; Metazoa - 262; Fungi - 72; Plants - 574; Viruses - 0; Other Eukaryotes - 1390 (source: NCBI BLink). & (reliability: 344.0) & (original description: no original description)","protein_coding" "evm.model.contig_2126.15","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2139.22","No alias","Porphyridium purpureum","(at1g76400 : 152.0) Ribophorin I; FUNCTIONS IN: oligosaccharyl transferase activity, dolichyl-diphosphooligosaccharide-protein glycotransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribophorin I (InterPro:IPR007676); BEST Arabidopsis thaliana protein match is: Ribophorin I (TAIR:AT2G01720.1); Has 398 Blast hits to 398 proteins in 180 species: Archae - 2; Bacteria - 2; Metazoa - 149; Fungi - 127; Plants - 63; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). & (reliability: 304.0) & (original description: no original description)","protein_coding" "evm.model.contig_2139.23","No alias","Porphyridium purpureum","(at3g47810 : 160.0) Homolog of yeast retromer subunit VPS29. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.; MAIGO 1 (MAG1); FUNCTIONS IN: hydrolase activity, acting on ester bonds, protein serine/threonine phosphatase activity; INVOLVED IN: endosome to lysosome transport, protein targeting to vacuole; LOCATED IN: microsome, retromer complex, membrane, multivesicular body; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphodiesterase MJ0936 (InterPro:IPR000979); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 320.0) & (original description: no original description)","protein_coding" "evm.model.contig_2141.5","No alias","Porphyridium purpureum","(at3g53110 : 322.0) Encodes a putative DEAD-Box RNA Helicase and has RNA-dependent ATPase activity. Mutant is Sensitive to chilling stress and heat stress. Germination of the mutant is inhibited by ABA. LOS4 may be involved in temperature sensing. Is enriched in the nuclear envelope and also located in the cytoplasm. LOS4 is involved in export of poly A RNA.; LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4 (LOS4); FUNCTIONS IN: RNA helicase activity, RNA-dependent ATPase activity, ATP-dependent helicase activity; INVOLVED IN: poly(A)+ mRNA export from nucleus, response to cold, response to heat, response to abscisic acid stimulus; LOCATED IN: nuclear envelope, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eukaryotic initiation factor 4A-III (TAIR:AT3G19760.1); Has 40925 Blast hits to 40635 proteins in 3033 species: Archae - 702; Bacteria - 21081; Metazoa - 5720; Fungi - 4311; Plants - 2419; Viruses - 28; Other Eukaryotes - 6664 (source: NCBI BLink). & (q41741|if4a_maize : 271.0) Eukaryotic initiation factor 4A (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A) (eIF-4A) - Zea mays (Maize) & (gnl|cdd|68872 : 82.8) no description available & (reliability: 644.0) & (original description: no original description)","protein_coding" "evm.model.contig_2146.10","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2150.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2208.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2273.24","No alias","Porphyridium purpureum","(at3g03920 : 89.7) H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein; FUNCTIONS IN: snoRNA binding, pseudouridine synthase activity, RNA binding; LOCATED IN: chloroplast thylakoid membrane, nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Gar1, eukaryote (InterPro:IPR021154), H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 (InterPro:IPR007504); BEST Arabidopsis thaliana protein match is: H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein (TAIR:AT5G18180.1); Has 27180 Blast hits to 8695 proteins in 812 species: Archae - 17; Bacteria - 4971; Metazoa - 11125; Fungi - 2086; Plants - 5744; Viruses - 428; Other Eukaryotes - 2809 (source: NCBI BLink). & (reliability: 179.4) & (original description: no original description)","protein_coding" "evm.model.contig_2279.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2286.3","No alias","Porphyridium purpureum","(p52423|pur3_vigun : 128.0) Phosphoribosylglycinamide formyltransferase, chloroplast precursor (EC 2.1.2.2) (GART) (GAR transformylase) (5'-phosphoribosylglycinamide transformylase) - Vigna unguiculata (Cowpea) & (at1g31220 : 125.0) N10-formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase that catalyzes the conversion of phosphoribosyl glycineamide to phosphoribosyl N-formylglycineamide; Formyl transferase; FUNCTIONS IN: hydroxymethyl-, formyl- and related transferase activity, phosphoribosylglycinamide formyltransferase activity, formyltetrahydrofolate deformylase activity; INVOLVED IN: purine ribonucleotide biosynthetic process, biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosylglycinamide formyltransferase, active site (InterPro:IPR001555), Phosphoribosylglycinamide formyltransferase (InterPro:IPR004607), Formyl transferase, N-terminal (InterPro:IPR002376); BEST Arabidopsis thaliana protein match is: Formyl transferase (TAIR:AT4G17360.1); Has 13846 Blast hits to 13846 proteins in 2648 species: Archae - 117; Bacteria - 9929; Metazoa - 318; Fungi - 202; Plants - 129; Viruses - 3; Other Eukaryotes - 3148 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description)","protein_coding" "evm.model.contig_2364.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2494.12","No alias","Porphyridium purpureum","(at5g58270 : 578.0) Encodes a mitochondrial half-molecule ABC transporter, a member of ATM subfamily. Mutants are dwarfed, chlorotic plants with altered leaf morphology. ATM3 transcription is induced by Cd(II) or Pb(II). Involved in heavy metal resistance. Arabidopsis thaliana has three ATM genes, namely ATM1, ATM2 and ATM3. Only ATM3 has an important function for plant growth. Role in Moco biosynthesis.; ABC transporter of the mitochondrion 3 (ATM3); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: in 9 processes; LOCATED IN: mitochondrion, chloroplast, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter of the mitochondrion 1 (TAIR:AT4G28630.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q6yuu5|mdr_orysa : 210.0) Putative multidrug resistance protein (P-glycoprotein) - Oryza sativa (Rice) & (reliability: 1156.0) & (original description: no original description)","protein_coding" "evm.model.contig_2499.3","No alias","Porphyridium purpureum","(at2g31190 : 178.0) Encodes RUS2 (root UVB sensitive2), a DUF647-containing protein that is homologous to the RUS1 protein. RUS2 works with RUS1 in a root UV-B sensing pathway that plays a vital role in Arabidopsis early seedling morphogenesis and development. Required for auxin polar transport.; ROOT UV-B SENSITIVE 2 (RUS2); INVOLVED IN: response to UV-B, auxin polar transport; LOCATED IN: mitochondrion, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT5G49820.1). & (reliability: 356.0) & (original description: no original description)","protein_coding" "evm.model.contig_2502.5","No alias","Porphyridium purpureum","(at3g19820 : 329.0) Involved in the conversion of the early brassinosteroid precursor 24-methylenecholesterol to campesterol. Brassinosteroids affect cellular elongation. Mutants have dwarf phenotype. DWF1 is a Ca2+-dependent calmodulin-binding protein.; DWARF 1 (DWF1); CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), FAD linked oxidase, N-terminal (InterPro:IPR006094). & (p93472|dim_pea : 307.0) Cell elongation protein diminuto - Pisum sativum (Garden pea) & (gnl|cdd|68872 : 88.9) no description available & (reliability: 658.0) & (original description: no original description)","protein_coding" "evm.model.contig_29.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3384.14","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3384.20","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3394.6","No alias","Porphyridium purpureum","(at1g18480 : 140.0) Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT1G07010.1); Has 638 Blast hits to 634 proteins in 194 species: Archae - 15; Bacteria - 274; Metazoa - 0; Fungi - 21; Plants - 102; Viruses - 3; Other Eukaryotes - 223 (source: NCBI BLink). & (reliability: 280.0) & (original description: no original description)","protein_coding" "evm.model.contig_3404.13","No alias","Porphyridium purpureum","(at5g51970 : 306.0) Encodes a putative sorbitol dehydrogenase that can be thiolated in vitro.; GroES-like zinc-binding alcohol dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding alcohol dehydrogenase family protein (TAIR:AT5G63620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p14673|adh1_soltu : 100.0) Alcohol dehydrogenase 1 (EC 1.1.1.1) - Solanum tuberosum (Potato) & (reliability: 612.0) & (original description: no original description)","protein_coding" "evm.model.contig_3405.13","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3423.29","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3436.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3438.7","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3445.3","No alias","Porphyridium purpureum","(at3g05000 : 104.0) Transport protein particle (TRAPP) component; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194); Has 457 Blast hits to 457 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 137; Plants - 66; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). & (reliability: 208.0) & (original description: no original description)","protein_coding" "evm.model.contig_3457.1","No alias","Porphyridium purpureum","(at3g04820 : 173.0) Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, TruD (InterPro:IPR001656), Pseudouridine synthase TruD, eukaryotic (InterPro:IPR017091), Pseudouridine synthase, TruD, insertion domain (InterPro:IPR011760); Has 2276 Blast hits to 2198 proteins in 933 species: Archae - 260; Bacteria - 1262; Metazoa - 203; Fungi - 153; Plants - 61; Viruses - 0; Other Eukaryotes - 337 (source: NCBI BLink). & (reliability: 346.0) & (original description: no original description)","protein_coding" "evm.model.contig_3470.12","No alias","Porphyridium purpureum","(at5g12470 : 148.0) Protein of unknown function (DUF3411); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF399 and DUF3411) (TAIR:AT2G40400.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 296.0) & (original description: no original description)","protein_coding" "evm.model.contig_3471.4","No alias","Porphyridium purpureum","(at4g35460 : 392.0) NADPH-dependent thioredoxin reductase 1 (NTR1. Similar to E.coli NTR and has conserved NADPH binding domains.; NADPH-dependent thioredoxin reductase B (NTRB); FUNCTIONS IN: thioredoxin-disulfide reductase activity; INVOLVED IN: pollen germination, thioredoxin biosynthetic process, cell growth, seed development, cell redox homeostasis; LOCATED IN: cytosol, mitochondrion, chloroplast envelope; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II, active site (InterPro:IPR008255), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), Thioredoxin reductase (InterPro:IPR005982), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: NADPH-dependent thioredoxin reductase A (TAIR:AT2G17420.1); Has 22764 Blast hits to 22762 proteins in 2961 species: Archae - 698; Bacteria - 15900; Metazoa - 139; Fungi - 313; Plants - 208; Viruses - 0; Other Eukaryotes - 5506 (source: NCBI BLink). & (reliability: 784.0) & (original description: no original description)","protein_coding" "evm.model.contig_3488.15","No alias","Porphyridium purpureum","(at5g37830 : 1249.0) Encodes a 5-oxoprolinase that acts in the glutathione degradation pathway and in 5-oxoproline metabolism.; oxoprolinase 1 (OXP1); CONTAINS InterPro DOMAIN/s: Hydantoinase B/oxoprolinase (InterPro:IPR003692), Hydantoinase/oxoprolinase (InterPro:IPR002821), Hydantoinaseoxoprolinase, N-terminal (InterPro:IPR008040); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 2498.0) & (original description: no original description)","protein_coding" "evm.model.contig_3492.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3492.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3492.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3495.8","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3534.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3542.2","No alias","Porphyridium purpureum","(at1g10130 : 842.0) Encodes a golgi localized P2A-type Ca2+ ATPase involved in Mn nutrition and homeostasis.; endoplasmic reticulum-type calcium-transporting ATPase 3 (ECA3); FUNCTIONS IN: manganese-transporting ATPase activity, calcium-transporting ATPase activity, calmodulin binding; INVOLVED IN: manganese ion transport, calcium ion transport, root development, manganese ion homeostasis; LOCATED IN: endomembrane system, Golgi apparatus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting (InterPro:IPR005782), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: endomembrane-type CA-ATPase 4 (TAIR:AT1G07670.1); Has 52019 Blast hits to 33942 proteins in 3233 species: Archae - 1100; Bacteria - 36533; Metazoa - 4334; Fungi - 2931; Plants - 2474; Viruses - 3; Other Eukaryotes - 4644 (source: NCBI BLink). & (q6atv4|aca2_orysa : 307.0) Calcium-transporting ATPase 2, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 2) - Oryza sativa (Rice) & (reliability: 1684.0) & (original description: no original description)","protein_coding" "evm.model.contig_3552.5","No alias","Porphyridium purpureum","(at3g20050 : 578.0) Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1).; T-complex protein 1 alpha subunit (TCP-1); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, alpha subunit (InterPro:IPR012715); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 17155 Blast hits to 17114 proteins in 3594 species: Archae - 808; Bacteria - 7960; Metazoa - 2159; Fungi - 1408; Plants - 801; Viruses - 0; Other Eukaryotes - 4019 (source: NCBI BLink). & (p40412|tcpe1_avesa : 205.0) T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K19) - Avena sativa (Oat) & (reliability: 1156.0) & (original description: no original description)","protein_coding" "evm.model.contig_3582.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3590.2","No alias","Porphyridium purpureum","(at1g54220 : 241.0) Dihydrolipoamide acetyltransferase, long form protein; FUNCTIONS IN: dihydrolipoyllysine-residue acetyltransferase activity, acyltransferase activity; INVOLVED IN: pyruvate metabolic process, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Dihydrolipoamide acetyltransferase, long form (InterPro:IPR006257), E3 binding (InterPro:IPR004167), 2-oxoacid dehydrogenase acyltransferase, catalytic domain (InterPro:IPR001078), Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089); BEST Arabidopsis thaliana protein match is: Dihydrolipoamide acetyltransferase, long form protein (TAIR:AT3G13930.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 482.0) & (original description: no original description)","protein_coding" "evm.model.contig_3623.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3623.3","No alias","Porphyridium purpureum","(at5g23535 : 101.0) KOW domain-containing protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L24/L26, conserved site (InterPro:IPR005825), KOW (InterPro:IPR005824), Ribosomal protein L24 (InterPro:IPR003256); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT5G54600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 202.0) & (original description: no original description)","protein_coding" "evm.model.contig_3646.4","No alias","Porphyridium purpureum","(at3g52050 : 146.0) 5'-3' exonuclease family protein; FUNCTIONS IN: 5'-3' exonuclease activity, DNA binding, catalytic activity; CONTAINS InterPro DOMAIN/s: 5'-3' exonuclease, SAM-fold domain (InterPro:IPR020047), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), 5'-3' exonuclease, N-terminal (InterPro:IPR002421), 5'-3' exonuclease, N-terminal resolvase-like domain (InterPro:IPR020046), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G34380.2); Has 9778 Blast hits to 9773 proteins in 2548 species: Archae - 3; Bacteria - 6175; Metazoa - 3; Fungi - 2; Plants - 105; Viruses - 32; Other Eukaryotes - 3458 (source: NCBI BLink). & (reliability: 292.0) & (original description: no original description)","protein_coding" "evm.model.contig_432.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4400.13","No alias","Porphyridium purpureum","(at5g10010 : 192.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64910.1); Has 33260 Blast hits to 16857 proteins in 1270 species: Archae - 88; Bacteria - 3040; Metazoa - 11915; Fungi - 3137; Plants - 1371; Viruses - 424; Other Eukaryotes - 13285 (source: NCBI BLink). & (reliability: 384.0) & (original description: no original description)","protein_coding" "evm.model.contig_4400.7","No alias","Porphyridium purpureum","(at2g17130 : 319.0) Encodes a regulatory subunit of the mitochondrially-localized NAD+- dependent isocitrate dehydrogenase.; isocitrate dehydrogenase subunit 2 (IDH2); FUNCTIONS IN: isocitrate dehydrogenase (NAD+) activity; INVOLVED IN: isocitrate metabolic process, tricarboxylic acid cycle, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NAD-dependent, mitochondrial (InterPro:IPR004434); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase 1 (TAIR:AT4G35260.1); Has 15958 Blast hits to 15829 proteins in 2704 species: Archae - 398; Bacteria - 9603; Metazoa - 617; Fungi - 818; Plants - 241; Viruses - 0; Other Eukaryotes - 4281 (source: NCBI BLink). & (p29696|leu3_soltu : 293.0) 3-isopropylmalate dehydrogenase, chloroplast precursor (EC 1.1.1.85) (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) - Solanum tuberosum (Potato) & (reliability: 638.0) & (original description: no original description)","protein_coding" "evm.model.contig_4403.16","No alias","Porphyridium purpureum","(at5g56750 : 102.0) N-MYC downregulated-like 1 (NDL1); CONTAINS InterPro DOMAIN/s: Pollen specific protein SF21 (InterPro:IPR015511), Ndr (InterPro:IPR004142); BEST Arabidopsis thaliana protein match is: N-MYC downregulated-like 3 (TAIR:AT2G19620.1); Has 776 Blast hits to 775 proteins in 111 species: Archae - 2; Bacteria - 48; Metazoa - 563; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). & (reliability: 191.0) & (original description: no original description)","protein_coding" "evm.model.contig_4404.8","No alias","Porphyridium purpureum","(at5g15860 : 92.8) Encodes a protein with prenylcysteine methylesterase activity.; prenylcysteine methylesterase (PCME); CONTAINS InterPro DOMAIN/s: Carboxylesterase type B, active site (InterPro:IPR019826), Carboxylesterase, type B (InterPro:IPR002018); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G02410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 176.4) & (original description: no original description)","protein_coding" "evm.model.contig_4411.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4421.1","No alias","Porphyridium purpureum","(at4g20070 : 182.0) The gene encoding Arabidopsis thaliana Allantoate Amidohydrolase (AtAAH)which catalyzes the allantoate deiminase reaction (EC 3.5.3.9)is expressed in all parts of the plant being consistent with a function in purine turnover in Arabidopsis.; allantoate amidohydrolase (AAH); CONTAINS InterPro DOMAIN/s: Peptidase M20 (InterPro:IPR002933), ArgE/DapE/ACY1/CPG2/YscS, conserved site (InterPro:IPR001261), Amidase, hydantoinase/carbamoylase (InterPro:IPR010158), Peptidase M20, dimerisation (InterPro:IPR011650); BEST Arabidopsis thaliana protein match is: ureidoglycolate amidohydrolase (TAIR:AT5G43600.1); Has 3541 Blast hits to 3529 proteins in 962 species: Archae - 54; Bacteria - 2502; Metazoa - 32; Fungi - 158; Plants - 88; Viruses - 0; Other Eukaryotes - 707 (source: NCBI BLink). & (gnl|cdd|68872 : 81.2) no description available & (reliability: 364.0) & (original description: no original description)","protein_coding" "evm.model.contig_4438.10","No alias","Porphyridium purpureum","(at1g36310 : 128.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 256.0) & (original description: no original description)","protein_coding" "evm.model.contig_4445.2","No alias","Porphyridium purpureum","(at4g27585 : 292.0) SPFH/Band 7/PHB domain-containing membrane-associated protein family; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: callus, leaf; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G54100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 584.0) & (original description: no original description)","protein_coding" "evm.model.contig_4449.4","No alias","Porphyridium purpureum","(at2g15430 : 196.0) Non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, encoded by At2g15400, can substitute for At2g15430 in the context of Pol V.; NRPB3; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: in 6 components; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, 30-40kDa subunit, conserved site (InterPro:IPR001514), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein (TAIR:AT2G15400.1); Has 1362 Blast hits to 1362 proteins in 353 species: Archae - 243; Bacteria - 1; Metazoa - 278; Fungi - 347; Plants - 109; Viruses - 0; Other Eukaryotes - 384 (source: NCBI BLink). & (reliability: 392.0) & (original description: no original description)","protein_coding" "evm.model.contig_4453.5","No alias","Porphyridium purpureum",""(at2g26170 : 134.0) Encodes a protein with similarity to thromboxane-A synthase, member of the CYP711A cytochrome P450 family. MAX1 is a specific repressor of vegetative axillary buds generated by the axillary meristem. Expressed in vascular traces in the rosette stem and axillary buds throughout plant development. Mutants have increased axillary branches. Along with MAX3,4 thought to mediate control of shoot branching via synthesis of a signal molecule which is transported over long distance mediated by MAX2. cDNA supports the existence of the longer transcript predicted for this locus, no cDNA isolated for shorter transcript. MAX1 downregulates 11 genes involved in flavonoid pathway (CHS, CHI, F3H, F3'H, FLS, DFR, ANS, UFGT, RT, AAC and GST).; ""cytochrome P450, family 711, subfamily A, polypeptide 1"" (CYP711A1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: carotenoid biosynthetic process, positive regulation of flavonoid biosynthetic process, regulation of meristem structural organization, secondary shoot formation, auxin polar transport; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 81, subfamily D, polypeptide 3 (TAIR:AT4G37340.1); Has 33662 Blast hits to 33590 proteins in 1727 species: Archae - 52; Bacteria - 5395; Metazoa - 11559; Fungi - 6944; Plants - 8228; Viruses - 3; Other Eukaryotes - 1481 (source: NCBI BLink). & (q43078|c97b1_pea : 108.0) Cytochrome P450 97B1 (EC 1.14.-.-) (P450 97A2) - Pisum sativum (Garden pea) & (reliability: 268.0) & (original description: no original description)"","protein_coding" "evm.model.contig_4477.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4477.7","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4479.2","No alias","Porphyridium purpureum","(at5g20890 : 592.0) TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: anchored to plasma membrane, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, beta subunit (InterPro:IPR012716), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 19831 Blast hits to 19435 proteins in 3922 species: Archae - 807; Bacteria - 9602; Metazoa - 2181; Fungi - 1427; Plants - 861; Viruses - 0; Other Eukaryotes - 4953 (source: NCBI BLink). & (p40412|tcpe1_avesa : 243.0) T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K19) - Avena sativa (Oat) & (reliability: 1184.0) & (original description: no original description)","protein_coding" "evm.model.contig_448.20","No alias","Porphyridium purpureum","(q08062|mdhc_maize : 99.0) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) - Zea mays (Maize) & (at1g04410 : 96.3) Lactate/malate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to cadmium ion, response to zinc ion, response to salt stress; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, cytosolic (InterPro:IPR011274), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, NAD/NADP (InterPro:IPR010945), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT5G43330.1); Has 11998 Blast hits to 11997 proteins in 3022 species: Archae - 169; Bacteria - 7171; Metazoa - 1456; Fungi - 287; Plants - 683; Viruses - 0; Other Eukaryotes - 2232 (source: NCBI BLink). & (reliability: 192.6) & (original description: no original description)","protein_coding" "evm.model.contig_450.7","No alias","Porphyridium purpureum","(at4g30860 : 169.0) Encodes a member of the trxG protein family. Contains a SET domain which is known to be involved in modification of histone tails by methylation. Interacts physically with AMS, but the implications of this interaction are unknown.Overexpression results in plieotrophic developmental defects.; SET domain group 4 (SDG4); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Post-SET domain (InterPro:IPR003616), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: histone-lysine N-methyltransferase ASHH3 (TAIR:AT2G44150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 338.0) & (original description: no original description)","protein_coding" "evm.model.contig_4510.1","No alias","Porphyridium purpureum","(at5g63840 : 673.0) radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme.; RADIAL SWELLING 3 (RSW3); FUNCTIONS IN: glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to cadmium ion, cellulose biosynthetic process, defense response to bacterium, unidimensional cell growth; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322); BEST Arabidopsis thaliana protein match is: heteroglycan glucosidase 1 (TAIR:AT3G23640.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q653v7|aglu_orysa : 241.0) Probable alpha-glucosidase Os06g0675700 precursor (EC 3.2.1.20) (Maltase) - Oryza sativa (Rice) & (reliability: 1346.0) & (original description: no original description)","protein_coding" "evm.model.contig_4544.3","No alias","Porphyridium purpureum","(at1g67550 : 909.0) Encodes a nickel-containing urea hydrolase involved in nitrogen recycling. It requires three urease accessory proteins for its activation.; urease (URE); CONTAINS InterPro DOMAIN/s: Urease, alpha subunit (InterPro:IPR005848), Urease, alpha subunit, conserved site (InterPro:IPR017950), Amidohydrolase 1 (InterPro:IPR006680), Urease, alpha/gamma subunit (InterPro:IPR002026), Urease, alpha subunit, core (InterPro:IPR017952), Metal-dependent hydrolase, composite domain (InterPro:IPR011059), Urease, beta subunit (InterPro:IPR002019), Urease (InterPro:IPR008221), Urease, alpha subunit, C-terminal (InterPro:IPR017951), Urease alpha-subunit, N-terminal (InterPro:IPR011612); Has 10097 Blast hits to 10094 proteins in 1139 species: Archae - 93; Bacteria - 7117; Metazoa - 16; Fungi - 228; Plants - 47; Viruses - 0; Other Eukaryotes - 2596 (source: NCBI BLink). & (p08298|urea_soybn : 139.0) Urease (EC 3.5.1.5) (Urea amidohydrolase) (Fragment) - Glycine max (Soybean) & (reliability: 1818.0) & (original description: no original description)","protein_coding" "evm.model.contig_4551.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_458.8","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_460.5","No alias","Porphyridium purpureum","(at1g04900 : 137.0) Protein of unknown function (DUF185); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF185 (InterPro:IPR003788); Has 316 Blast hits to 314 proteins in 164 species: Archae - 0; Bacteria - 117; Metazoa - 2; Fungi - 113; Plants - 44; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). & (reliability: 274.0) & (original description: no original description)","protein_coding" "evm.model.contig_468.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_477.13","No alias","Porphyridium purpureum","(at1g31180 : 191.0) The AtIMD3 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids.; isopropylmalate dehydrogenase 3 (IMD3); FUNCTIONS IN: 3-isopropylmalate dehydrogenase activity; INVOLVED IN: leucine biosynthetic process, response to salt stress, metabolic process; LOCATED IN: thylakoid, chloroplast, chloroplast stroma, plastid; EXPRESSED IN: fruit, root, leaf; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Isopropylmalate dehydrogenase (InterPro:IPR004429), Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate/isopropylmalate dehydrogenase, conserved site (InterPro:IPR019818); BEST Arabidopsis thaliana protein match is: isopropylmalate dehydrogenase 1 (TAIR:AT5G14200.1); Has 15253 Blast hits to 15253 proteins in 2616 species: Archae - 395; Bacteria - 8280; Metazoa - 576; Fungi - 831; Plants - 243; Viruses - 0; Other Eukaryotes - 4928 (source: NCBI BLink). & (p29102|leu3_brana : 188.0) 3-isopropylmalate dehydrogenase, chloroplast precursor (EC 1.1.1.85) (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) - Brassica napus (Rape) & (reliability: 382.0) & (original description: no original description)","protein_coding" "evm.model.contig_491.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_491.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_500.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_510.4","No alias","Porphyridium purpureum","(at3g05090 : 265.0) Encodes a DCAF protein. Mutants are defective in lateral root development and suggest roles for DDB1≠Cul4ñmediated protein degradation in regulating auxin accumulation during lateral root primordium development and lateral root meristem emergence.; LATERAL ROOT STIMULATOR 1 (LRS1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: lateral root formation; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Protein of unknown function DUF3337 (InterPro:IPR021772), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, alpha subunit (TAIR:AT1G62020.1); Has 59803 Blast hits to 26869 proteins in 729 species: Archae - 50; Bacteria - 7042; Metazoa - 23770; Fungi - 14096; Plants - 7202; Viruses - 3; Other Eukaryotes - 7640 (source: NCBI BLink). & (reliability: 530.0) & (original description: no original description)","protein_coding" "evm.model.contig_511.1","No alias","Porphyridium purpureum","(at5g20520 : 199.0) Encodes a Bem46-like protein. WAV2 negatively regulates root bending when roots alter their growth direction. It's not involved in sensing environmental stimuli (e.g. gravity, light, water, touch).; WAVY GROWTH 2 (WAV2); FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: root development; LOCATED IN: organelle inner membrane, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G13610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 398.0) & (original description: no original description)","protein_coding" "evm.model.contig_527.25","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_542.10","No alias","Porphyridium purpureum","(at5g19820 : 684.0) embryo defective 2734 (emb2734); FUNCTIONS IN: lyase activity, binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cell wall, phycobilisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G27640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1368.0) & (original description: no original description)","protein_coding" "evm.model.contig_565.6","No alias","Porphyridium purpureum","(at4g39080 : 573.0) Vacuolar proton ATPase subunit VHA-a isoform 3. Localized in the tonoplast.; vacuolar proton ATPase A3 (VHA-A3); FUNCTIONS IN: ATPase activity, hydrogen-translocating pyrophosphatase activity; INVOLVED IN: cellular response to nutrient levels, ATP synthesis coupled proton transport; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V0/A0 complex, 116kDa subunit (InterPro:IPR002490); BEST Arabidopsis thaliana protein match is: vacuolar proton ATPase A2 (TAIR:AT2G21410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1146.0) & (original description: no original description)","protein_coding" "evm.model.contig_568.7","No alias","Porphyridium purpureum","(at2g35840 : 101.0) Sucrose-6F-phosphate phosphohydrolase family protein; FUNCTIONS IN: phosphatase activity, magnesium ion binding, sucrose-phosphatase activity, catalytic activity; INVOLVED IN: sucrose biosynthetic process; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sucrose-phosphate synthase (InterPro:IPR006380), Sucrose-6-phosphate phosphohydrolase C-terminal (InterPro:IPR013679), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Sucrose phosphatase, plant/cyanobacteria (InterPro:IPR012847), Sucrose-phosphate phosphatase (InterPro:IPR006378); BEST Arabidopsis thaliana protein match is: sucrose-phosphatase 1 (TAIR:AT1G51420.1). & (reliability: 202.0) & (original description: no original description)","protein_coding" "evm.model.contig_569.2","No alias","Porphyridium purpureum",""(at2g18040 : 124.0) phosphorylation-specific peptidyl prolyl cis/trans isomerase (PPIase) with specificity for phosphoserine-proline bonds; ""peptidylprolyl cis/trans isomerase, NIMA-interacting 1"" (PIN1AT); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, PpiC-type (InterPro:IPR000297); BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT1G26550.1); Has 6394 Blast hits to 6305 proteins in 1691 species: Archae - 14; Bacteria - 4880; Metazoa - 261; Fungi - 147; Plants - 126; Viruses - 0; Other Eukaryotes - 966 (source: NCBI BLink). & (q94g00|pin1_maldo : 122.0) Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (Rotamase Pin1) (PPIase Pin1) (MdPin1) - Malus domestica (Apple) (Malus sylvestris) & (reliability: 248.0) & (original description: no original description)"","protein_coding" "evm.model.contig_579.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_597.2","No alias","Porphyridium purpureum","(at3g07100 : 419.0) Encodes SEC24a/ERMO2. Required for endoplasmic reticulum (ER) morphology.; ENDOPLASMIC RETICULUM MORPHOLOGY 2 (ERMO2); FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: transport, ER body organization; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: clone eighty-four (TAIR:AT3G44340.1); Has 86818 Blast hits to 46504 proteins in 1607 species: Archae - 60; Bacteria - 12149; Metazoa - 40940; Fungi - 13838; Plants - 8598; Viruses - 2013; Other Eukaryotes - 9220 (source: NCBI BLink). & (reliability: 838.0) & (original description: no original description)","protein_coding" "evm.model.contig_598.2","No alias","Porphyridium purpureum","(at1g55790 : 80.9) FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Copper transport protein family (TAIR:AT3G20180.1). & (reliability: 161.8) & (original description: no original description)","protein_coding" "evm.model.contig_611.17","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_750.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000057.122","No alias","Cyanophora paradoxa","(at1g63660 : 142.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 284.0) & (original description: no original description)","protein_coding" "evm.model.tig00000057.123","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000057.124","No alias","Cyanophora paradoxa","(at1g63660 : 184.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 368.0) & (original description: no original description)","protein_coding" "evm.model.tig00000093.151","No alias","Cyanophora paradoxa","(at5g26742 : 291.0) embryo defective 1138 (emb1138); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), GUCT (InterPro:IPR012562), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, CCHC-type (InterPro:IPR001878), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: putative mitochondrial RNA helicase 2 (TAIR:AT3G22330.1). & (q41382|rh7_spiol : 263.0) DEAD-box ATP-dependent RNA helicase 7 (EC 3.6.1.-) - Spinacia oleracea (Spinach) & (reliability: 582.0) & (original description: no original description)","protein_coding" "evm.model.tig00000093.66","No alias","Cyanophora paradoxa","(at3g26410 : 83.6) methyltransferases;nucleic acid binding; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative RNA methylase (InterPro:IPR000241), tRNA guanosine-2'-O-methyltransferase, TRM11 (InterPro:IPR016691), DNA methylase, N-6 adenine-specific, conserved site (InterPro:IPR002052); Has 597 Blast hits to 588 proteins in 280 species: Archae - 150; Bacteria - 5; Metazoa - 158; Fungi - 132; Plants - 50; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink). & (reliability: 167.2) & (original description: no original description)","protein_coding" "evm.model.tig00000113.127","No alias","Cyanophora paradoxa","(at2g39670 : 290.0) Radical SAM superfamily protein; FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Ribosomal RNA large subunit methyltransferase RlmN; (InterPro:IPR004383), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: Radical SAM superfamily protein (TAIR:AT3G19630.1); Has 6992 Blast hits to 6986 proteins in 2311 species: Archae - 11; Bacteria - 5102; Metazoa - 1; Fungi - 1; Plants - 134; Viruses - 5; Other Eukaryotes - 1738 (source: NCBI BLink). & (reliability: 580.0) & (original description: no original description)","protein_coding" "evm.model.tig00000113.35","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000144.101","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000157.30","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000178.56","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000215.33","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000241.20","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000403.35","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000404.33","No alias","Cyanophora paradoxa","(at3g08740 : 216.0) elongation factor P (EF-P) family protein; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor P (InterPro:IPR011768), Translation elongation factor P/YeiP, conserved site (InterPro:IPR013852), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, KOW-like (InterPro:IPR013185), Translation protein SH3-like, subgroup (InterPro:IPR014722), Elongation factor P, C-terminal (InterPro:IPR015365), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Translation elongation factor P/YeiP, central (InterPro:IPR001059), Translation elongation factor P/YeiP (InterPro:IPR020599); BEST Arabidopsis thaliana protein match is: elongation factor P (EF-P) family protein (TAIR:AT4G26310.1); Has 10499 Blast hits to 10498 proteins in 2700 species: Archae - 4; Bacteria - 7892; Metazoa - 1; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2521 (source: NCBI BLink). & (reliability: 432.0) & (original description: no original description)","protein_coding" "evm.model.tig00000405.48","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000411.31","No alias","Cyanophora paradoxa","(at2g02810 : 137.0) Encodes a multitransmembrane hydrophobic protein that functions as transporter of UDP-galactose and UDP-glucose into the Golgi. Localized in the ER. Involved in the unfolded protein response, a mechanism that controls proper protein folding in the ER.; UDP-galactose transporter 1 (UTR1); CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: UDP-galactose transporter 3 (TAIR:AT1G14360.1); Has 1052 Blast hits to 1046 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 503; Fungi - 150; Plants - 232; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink). & (reliability: 274.0) & (original description: no original description)","protein_coding" "evm.model.tig00000478.23","No alias","Cyanophora paradoxa","(at1g06720 : 305.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42440.1); Has 8329 Blast hits to 5822 proteins in 470 species: Archae - 49; Bacteria - 737; Metazoa - 2493; Fungi - 1253; Plants - 549; Viruses - 77; Other Eukaryotes - 3171 (source: NCBI BLink). & (reliability: 610.0) & (original description: no original description)","protein_coding" "evm.model.tig00000480.46","No alias","Cyanophora paradoxa","(at3g45890 : 188.0) Encodes RUS1 (root UVB sensitive 1), a protein that contains DUF647 (domain of unknown function 647), a domain highly conserved in eukaryotes. The primary root of rus1 is hypersensitive to very low-fluence-rate (VLF) UVB.; ROOT UVB SENSITIVE 1 (RUS1); INVOLVED IN: response to UV-B, developmental process; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: lateral root, root apical meristem, callus, elongation zone, embryonic root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT1G13770.1); Has 458 Blast hits to 456 proteins in 133 species: Archae - 0; Bacteria - 2; Metazoa - 116; Fungi - 71; Plants - 198; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink). & (reliability: 376.0) & (original description: no original description)","protein_coding" "evm.model.tig00000498.63","No alias","Cyanophora paradoxa","(q08480|kad2_orysa : 255.0) Adenylate kinase B (EC 2.7.4.3) (ATP-AMP transphosphorylase) - Oryza sativa (Rice) & (at5g63400 : 254.0) encodes a protein similar to adenylate kinase.; adenylate kinase 1 (ADK1); FUNCTIONS IN: copper ion binding, adenylate kinase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase, active site lid domain (InterPro:IPR007862), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: Adenylate kinase family protein (TAIR:AT5G50370.1); Has 14853 Blast hits to 14693 proteins in 5114 species: Archae - 98; Bacteria - 9957; Metazoa - 1251; Fungi - 476; Plants - 450; Viruses - 0; Other Eukaryotes - 2621 (source: NCBI BLink). & (reliability: 508.0) & (original description: no original description)","protein_coding" "evm.model.tig00000581.33","No alias","Cyanophora paradoxa","(at1g23820 : 266.0) Spermidine synthase.; spermidine synthase 1 (SPDS1); FUNCTIONS IN: spermidine synthase activity; INVOLVED IN: spermidine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 2 (TAIR:AT1G70310.1); Has 5225 Blast hits to 5225 proteins in 1497 species: Archae - 169; Bacteria - 2879; Metazoa - 350; Fungi - 195; Plants - 413; Viruses - 0; Other Eukaryotes - 1219 (source: NCBI BLink). & (q9ztr1|spd1_pea : 256.0) Spermidine synthase 1 (EC 2.5.1.16) (Putrescine aminopropyltransferase 1) (SPDSY 1) - Pisum sativum (Garden pea) & (reliability: 532.0) & (original description: no original description)","protein_coding" "evm.model.tig00000615.43","No alias","Cyanophora paradoxa","(at2g40700 : 189.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G65900.1); Has 40440 Blast hits to 37904 proteins in 2977 species: Archae - 739; Bacteria - 19708; Metazoa - 6217; Fungi - 4486; Plants - 2481; Viruses - 5; Other Eukaryotes - 6804 (source: NCBI BLink). & (p46942|db10_nicsy : 112.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 378.0) & (original description: no original description)","protein_coding" "evm.model.tig00000640.22","No alias","Cyanophora paradoxa","(at2g17510 : 559.0) EMBRYO DEFECTIVE 2763 (EMB2763); FUNCTIONS IN: ribonuclease activity, RNA binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide binding protein, PINc (InterPro:IPR006596), Ribonuclease II/R (InterPro:IPR001900); BEST Arabidopsis thaliana protein match is: Ribonuclease II/R family protein (TAIR:AT1G77680.1). & (reliability: 1118.0) & (original description: no original description)","protein_coding" "evm.model.tig00000692.75","No alias","Cyanophora paradoxa","(at5g25800 : 114.0) Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: small RNA degrading nuclease 1 (TAIR:AT3G50100.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 228.0) & (original description: no original description)","protein_coding" "evm.model.tig00000711.70","No alias","Cyanophora paradoxa","(at4g34740 : 481.0) Encodes glutamine 5-phosphoribosylpyrophosphate amidotransferase. Mutants are deficient in leaf, but not cotyledon, plastid and palisade cell development. Mutants exhibit defective chloroplast development under non-low light, suggesting that the defect in chloroplast development is caused by photo-oxidative damage.; GLN phosphoribosyl pyrophosphate amidotransferase 2 (ASE2); FUNCTIONS IN: amidophosphoribosyltransferase activity; INVOLVED IN: purine base biosynthetic process, purine nucleotide biosynthetic process, leaf morphogenesis; LOCATED IN: plastid stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Phosphoribosyltransferase (InterPro:IPR000836), Amidophosphoribosyl transferase (InterPro:IPR005854), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: GLN phosphoribosyl pyrophosphate amidotransferase 1 (TAIR:AT2G16570.1); Has 21535 Blast hits to 21523 proteins in 2920 species: Archae - 630; Bacteria - 12403; Metazoa - 419; Fungi - 318; Plants - 251; Viruses - 17; Other Eukaryotes - 7497 (source: NCBI BLink). & (p52418|pur1_soybn : 478.0) Amidophosphoribosyltransferase, chloroplast precursor (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPAT) - Glycine max (Soybean) & (reliability: 962.0) & (original description: no original description)","protein_coding" "evm.model.tig00000792.46","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000792.66","No alias","Cyanophora paradoxa","(q9xg98|kprs1_spiol : 177.0) Ribose-phosphate pyrophosphokinase 1 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 1) - Spinacia oleracea (Spinach) & (at2g44530 : 173.0) Phosphoribosyltransferase family protein; FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: phosphoribosyl pyrophosphate (PRPP) synthase 2 (TAIR:AT1G32380.1); Has 11359 Blast hits to 11120 proteins in 2784 species: Archae - 259; Bacteria - 6102; Metazoa - 636; Fungi - 683; Plants - 217; Viruses - 13; Other Eukaryotes - 3449 (source: NCBI BLink). & (reliability: 346.0) & (original description: no original description)","protein_coding" "evm.model.tig00000863.2","No alias","Cyanophora paradoxa","(at3g54280 : 205.0) ROOT GROWTH DEFECTIVE 3 (RGD3); FUNCTIONS IN: helicase activity, binding, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), DEAD-like helicase, N-terminal (InterPro:IPR014001), Armadillo-type fold (InterPro:IPR016024), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1). & (q7g8y3|isw2_orysa : 181.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 410.0) & (original description: no original description)","protein_coding" "evm.model.tig00000900.33","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000912.48","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000949.11","No alias","Cyanophora paradoxa","(at5g53920 : 91.3) ribosomal protein L11 methyltransferase-related; FUNCTIONS IN: protein methyltransferase activity; INVOLVED IN: protein amino acid methylation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Ribosomal protein L11 methyltransferase (InterPro:IPR004498), Ribosomal L11 methyltransferase, PrmA (InterPro:IPR010456); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 182.6) & (original description: no original description)","protein_coding" "evm.model.tig00001027.29","No alias","Cyanophora paradoxa","(at4g15850 : 89.4) plant DEAD box-like RNA helicase.; RNA helicase 1 (RH1); CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT4G16630.1); Has 38711 Blast hits to 38056 proteins in 2969 species: Archae - 603; Bacteria - 19125; Metazoa - 5736; Fungi - 4393; Plants - 2535; Viruses - 13; Other Eukaryotes - 6306 (source: NCBI BLink). & (reliability: 178.8) & (original description: no original description)","protein_coding" "evm.model.tig00001038.5","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00001065.14","No alias","Cyanophora paradoxa","(at2g29200 : 403.0) Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.; pumilio 1 (PUM1); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940), Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 3 (TAIR:AT2G29140.1); Has 3905 Blast hits to 1986 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 808; Fungi - 1312; Plants - 896; Viruses - 0; Other Eukaryotes - 889 (source: NCBI BLink). & (reliability: 806.0) & (original description: no original description)","protein_coding" "evm.model.tig00001065.24","No alias","Cyanophora paradoxa","(at5g40200 : 343.0) Encodes a putative DegP protease.; DegP protease 9 (DegP9); FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DEGP protease 2 (TAIR:AT2G47940.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 686.0) & (original description: no original description)","protein_coding" "evm.model.tig00001086.14","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00001086.16","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00001086.29","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00001154.11","No alias","Cyanophora paradoxa","(at4g30000 : 114.0) Dihydropterin pyrophosphokinase / Dihydropteroate synthase; FUNCTIONS IN: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity, dihydropteroate synthase activity; INVOLVED IN: pteridine and derivative metabolic process, cellular metabolic process, folic acid and derivative biosynthetic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dihydropteroate synthase-like (InterPro:IPR011005), 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK (InterPro:IPR000550), Dihydropteroate synthase (InterPro:IPR006390), Pterin-binding (InterPro:IPR000489); BEST Arabidopsis thaliana protein match is: Dihydropterin pyrophosphokinase / Dihydropteroate synthase (TAIR:AT1G69190.1). & (reliability: 228.0) & (original description: no original description)","protein_coding" "evm.model.tig00001250.10","No alias","Cyanophora paradoxa","(at4g36850 : 87.0) PQ-loop repeat family protein / transmembrane family protein; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603); BEST Arabidopsis thaliana protein match is: PQ-loop repeat family protein / transmembrane family protein (TAIR:AT2G41050.1); Has 883 Blast hits to 635 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 204; Fungi - 499; Plants - 92; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink). & (reliability: 174.0) & (original description: no original description)","protein_coding" "evm.model.tig00001264.25","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020553.140","No alias","Cyanophora paradoxa","(p37833|aatc_orysa : 405.0) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A) - Oryza sativa (Rice) & (at5g19550 : 390.0) Nitrogen metabolism. Major cytosolic isoenzyme controlling aspartate biosynthesis in the light.; aspartate aminotransferase 2 (ASP2); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity, copper ion binding; INVOLVED IN: nitrogen compound metabolic process; LOCATED IN: cytosol, cell wall, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase 3 (TAIR:AT5G11520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 780.0) & (original description: no original description)","protein_coding" "evm.model.tig00020556.30","No alias","Cyanophora paradoxa","(at2g19870 : 187.0) tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: methyltransferase activity, RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537), RNA methyltransferase TrmH, group 3 (InterPro:IPR004441), RNA 2-O ribose methyltransferase, substrate binding (InterPro:IPR013123); Has 11661 Blast hits to 11576 proteins in 2636 species: Archae - 7; Bacteria - 7686; Metazoa - 749; Fungi - 216; Plants - 206; Viruses - 3; Other Eukaryotes - 2794 (source: NCBI BLink). & (reliability: 374.0) & (original description: no original description)","protein_coding" "evm.model.tig00020563.183","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020563.26","No alias","Cyanophora paradoxa","(at5g01470 : 134.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase-16, putative (InterPro:IPR019410); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 268.0) & (original description: no original description)","protein_coding" "evm.model.tig00020610.33","No alias","Cyanophora paradoxa","(at1g65930 : 579.0) Encodes a NADP+-isocitrate dehydrogenase that is believed to function in the cytosol. It appears to contribute to NADPH production under oxidative stress, and thereby to participate in redox signalling linked to defense responses.; cytosolic NADP+-dependent isocitrate dehydrogenase (cICDH); FUNCTIONS IN: isocitrate dehydrogenase (NADP+) activity, copper ion binding; INVOLVED IN: in 7 processes; LOCATED IN: cytosol, apoplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NADP-dependent, eukaryotic (InterPro:IPR004790), Isocitrate/isopropylmalate dehydrogenase, conserved site (InterPro:IPR019818); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase (TAIR:AT1G54340.1); Has 5437 Blast hits to 5413 proteins in 1130 species: Archae - 48; Bacteria - 1243; Metazoa - 817; Fungi - 231; Plants - 475; Viruses - 0; Other Eukaryotes - 2623 (source: NCBI BLink). & (q06197|idhc_soybn : 575.0) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) - Glycine max (Soybean) & (reliability: 1158.0) & (original description: no original description)","protein_coding" "evm.model.tig00020610.71","No alias","Cyanophora paradoxa","(at2g18220 : 250.0) Noc2p family; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0120 (InterPro:IPR005343); BEST Arabidopsis thaliana protein match is: Noc2p family (TAIR:AT3G55510.1); Has 4709 Blast hits to 3397 proteins in 331 species: Archae - 4; Bacteria - 179; Metazoa - 1693; Fungi - 681; Plants - 249; Viruses - 70; Other Eukaryotes - 1833 (source: NCBI BLink). & (q8lnu5|noc2l_orysa : 197.0) Nucleolar complex protein 2 homolog (Protein NOC2 homolog) - Oryza sativa (Rice) & (reliability: 500.0) & (original description: no original description)","protein_coding" "evm.model.tig00020685.18","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020780.28","No alias","Cyanophora paradoxa","(at3g12080 : 327.0) embryo defective 2738 (emb2738); FUNCTIONS IN: GTP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP-binding, EngA (InterPro:IPR016484), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP binding;GTP binding (TAIR:AT5G39960.1); Has 46500 Blast hits to 25681 proteins in 2968 species: Archae - 249; Bacteria - 36237; Metazoa - 387; Fungi - 432; Plants - 421; Viruses - 0; Other Eukaryotes - 8774 (source: NCBI BLink). & (reliability: 654.0) & (original description: no original description)","protein_coding" "evm.model.tig00020851.7","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020927.41","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020943.44","No alias","Cyanophora paradoxa","(at3g04820 : 189.0) Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, TruD (InterPro:IPR001656), Pseudouridine synthase TruD, eukaryotic (InterPro:IPR017091), Pseudouridine synthase, TruD, insertion domain (InterPro:IPR011760); Has 2276 Blast hits to 2198 proteins in 933 species: Archae - 260; Bacteria - 1262; Metazoa - 203; Fungi - 153; Plants - 61; Viruses - 0; Other Eukaryotes - 337 (source: NCBI BLink). & (reliability: 378.0) & (original description: no original description)","protein_coding" "evm.model.tig00020961.109","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00021017.20","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00021035.28","No alias","Cyanophora paradoxa","(at3g08730 : 170.0) Encodes a protein-serine kinase that phosphorylates ribosomal protein in vitro. Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Involved in translational up-regulation of ribosomal proteins. Phosphorylated by PDK1. Interacts with RAPTOR1, which in turn interacts with TOR. SPK6 activity is affected by osmotic stress, and plants overexpressing S6k1 are hypersensitive to osmotic stress. The gene is expressed in all tissues examined, with highest expression level detected in metabolically active tissues.; protein-serine kinase 1 (PK1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase, C-terminal (InterPro:IPR017892), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase 2 (TAIR:AT3G08720.2); Has 134224 Blast hits to 132007 proteins in 4588 species: Archae - 200; Bacteria - 15979; Metazoa - 48799; Fungi - 13454; Plants - 32927; Viruses - 586; Other Eukaryotes - 22279 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 91.7) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 340.0) & (original description: no original description)","protein_coding" "evm.model.tig00021073.41","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00021339.32","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00021441.8","No alias","Cyanophora paradoxa","(o48905|mdhc_medsa : 294.0) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) - Medicago sativa (Alfalfa) & (at1g04410 : 290.0) Lactate/malate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to cadmium ion, response to zinc ion, response to salt stress; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, cytosolic (InterPro:IPR011274), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, NAD/NADP (InterPro:IPR010945), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT5G43330.1); Has 11998 Blast hits to 11997 proteins in 3022 species: Archae - 169; Bacteria - 7171; Metazoa - 1456; Fungi - 287; Plants - 683; Viruses - 0; Other Eukaryotes - 2232 (source: NCBI BLink). & (reliability: 580.0) & (original description: no original description)","protein_coding" "evm.model.tig00021517.11","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00021531.15","No alias","Cyanophora paradoxa","(at5g14600 : 182.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: tRNA (adenine-N1-)-methyltransferase activity; INVOLVED IN: tRNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: tRNA methyltransferase complex GCD14 subunit (InterPro:IPR014816); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 364.0) & (original description: no original description)","protein_coding" "evm.model.tig00021571.35","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00021721.10","No alias","Cyanophora paradoxa","(at1g02305 : 103.0) Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02300.1); Has 7484 Blast hits to 7435 proteins in 695 species: Archae - 51; Bacteria - 161; Metazoa - 3268; Fungi - 4; Plants - 1732; Viruses - 146; Other Eukaryotes - 2122 (source: NCBI BLink). & (reliability: 206.0) & (original description: no original description)","protein_coding" "evm.model.tig00022080.3","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "Glyma.02G021700","No alias","Glycine max","Protein kinase superfamily protein","protein_coding" "Glyma.02G240302","No alias","Glycine max","SET domain group 40","protein_coding" "Glyma.02G291000","No alias","Glycine max","OTU-like cysteine protease family protein","protein_coding" "Glyma.03G097000","No alias","Glycine max","autophagocytosis-associated family protein","protein_coding" "Glyma.03G196000","No alias","Glycine max","pentatricopeptide (PPR) repeat-containing protein","protein_coding" "Glyma.03G198300","No alias","Glycine max","Protein of unknown function (DUF1022)","protein_coding" "Glyma.03G215500","No alias","Glycine max","AtL5","protein_coding" "Glyma.04G039600","No alias","Glycine max","heat shock transcription factor B4","protein_coding" "Glyma.04G074100","No alias","Glycine max","Protein of unknown function (DUF1218)","protein_coding" "Glyma.04G253900","No alias","Glycine max","Function unknown","protein_coding" "Glyma.04G255700","No alias","Glycine max","U2 snRNP auxilliary factor, large subunit, splicing factor","protein_coding" "Glyma.05G199100","No alias","Glycine max","TUDOR-SN protein 1","protein_coding" "Glyma.05G209300","No alias","Glycine max","Disease resistance protein (TIR-NBS class)","protein_coding" "Glyma.06G024900","No alias","Glycine max","winged-helix DNA-binding transcription factor family protein","protein_coding" "Glyma.06G086400","No alias","Glycine max","GATA transcription factor 12","protein_coding" "Glyma.07G007000","No alias","Glycine max","lipoxygenase 1","protein_coding" "Glyma.07G036500","No alias","Glycine max","DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein","protein_coding" "Glyma.07G069300","No alias","Glycine max","ubiquitin-conjugating enzyme 5","protein_coding" "Glyma.07G090900","No alias","Glycine max","NagB/RpiA/CoA transferase-like superfamily protein","protein_coding" "Glyma.07G144300","No alias","Glycine max","RING/U-box superfamily protein","protein_coding" "Glyma.07G150000","No alias","Glycine max","SGNH hydrolase-type esterase superfamily protein","protein_coding" "Glyma.07G252700","No alias","Glycine max","SC35-like splicing factor 28","protein_coding" "Glyma.07G257400","No alias","Glycine max","dual specificity protein phosphatase 1","protein_coding" "Glyma.08G013900","No alias","Glycine max","glutathione peroxidase 8","protein_coding" "Glyma.08G025000","No alias","Glycine max","Function unknown","protein_coding" "Glyma.08G156500","No alias","Glycine max","NAC domain containing protein 103","protein_coding" "Glyma.08G270500","No alias","Glycine max","Function unknown","protein_coding" "Glyma.08G298400","No alias","Glycine max","Homeobox-leucine zipper protein family","protein_coding" "Glyma.09G271400","No alias","Glycine max","RING/U-box superfamily protein","protein_coding" "Glyma.09G277200","No alias","Glycine max","saposin B domain-containing protein","protein_coding" "Glyma.10G009100","No alias","Glycine max","Protein kinase superfamily protein","protein_coding" "Glyma.10G104300","No alias","Glycine max","SERINE CARBOXYPEPTIDASE-LIKE 49","protein_coding" "Glyma.10G272400","No alias","Glycine max","Cysteinyl-tRNA synthetase, class Ia family protein","protein_coding" "Glyma.11G013600","No alias","Glycine max","Pentatricopeptide repeat (PPR-like) superfamily protein","protein_coding" "Glyma.11G090700","No alias","Glycine max","F-box family protein","protein_coding" "Glyma.11G109300","No alias","Glycine max","Function unknown","protein_coding" "Glyma.11G137000","No alias","Glycine max","pumilio 2","protein_coding" "Glyma.11G145800","No alias","Glycine max","Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein","protein_coding" "Glyma.11G230300","No alias","Glycine max","CRINKLY4 related 3","protein_coding" "Glyma.12G066800","No alias","Glycine max","UDP-N-acetylglucosamine (UAA) transporter family","protein_coding" "Glyma.12G087000","No alias","Glycine max","DNA polymerase epsilon catalytic subunit","protein_coding" "Glyma.12G095400","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding" "Glyma.12G098900","No alias","Glycine max","aconitase 3","protein_coding" "Glyma.12G195700","No alias","Glycine max","histone-lysine N-methyltransferase ATXR2","protein_coding" "Glyma.12G222600","No alias","Glycine max","Regulator of chromosome condensation (RCC1) family protein","protein_coding" "Glyma.12G230900","No alias","Glycine max","SecY protein transport family protein","protein_coding" "Glyma.13G201700","No alias","Glycine max","RNA-binding (RRM/RBD/RNP motifs) family protein","protein_coding" "Glyma.13G234900","No alias","Glycine max","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding" "Glyma.13G296700","No alias","Glycine max","Function unknown","protein_coding" "Glyma.13G323600","No alias","Glycine max","ATPase, AAA-type, CDC48 protein","protein_coding" "Glyma.13G367800","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding" "Glyma.14G113800","No alias","Glycine max","Function unknown","protein_coding" "Glyma.14G207300","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding" "Glyma.15G013900","No alias","Glycine max","Coatomer, beta\' subunit","protein_coding" "Glyma.15G078000","No alias","Glycine max","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding" "Glyma.15G090300","No alias","Glycine max","serine carboxypeptidase-like 19","protein_coding" "Glyma.15G127633","No alias","Glycine max","tubulin folding cofactor E / Pfifferling (PFI)","protein_coding" "Glyma.15G237800","No alias","Glycine max","annexin 8","protein_coding" "Glyma.15G276500","No alias","Glycine max","polyamine oxidase 1","protein_coding" "Glyma.16G023600","No alias","Glycine max","auxin response factor 18","protein_coding" "Glyma.16G085200","No alias","Glycine max","Disease resistance protein (TIR-NBS-LRR class) family","protein_coding" "Glyma.16G132600","No alias","Glycine max","folate transporter 1","protein_coding" "Glyma.17G067400","No alias","Glycine max","diacylglycerol kinase 7","protein_coding" "Glyma.17G095633","No alias","Glycine max","DDT domain superfamily","protein_coding" "Glyma.17G141500","No alias","Glycine max","Cwf15 / Cwc15 cell cycle control family protein","protein_coding" "Glyma.18G182100","No alias","Glycine max","SWIM zinc finger family protein","protein_coding" "Glyma.18G249502","No alias","Glycine max","WRKY family transcription factor","protein_coding" "Glyma.19G183500","No alias","Glycine max","Function unknown","protein_coding" "Glyma.19G263700","No alias","Glycine max","Ankyrin repeat family protein","protein_coding" "Glyma.20G096402","No alias","Glycine max","iron-regulated protein 3","protein_coding" "Glyma.20G103300","No alias","Glycine max","prefoldin 5","protein_coding" "Glyma.20G142700","No alias","Glycine max","Glycoprotein membrane precursor GPI-anchored","protein_coding" "Glyma.20G177000","No alias","Glycine max","alpha/beta-Hydrolases superfamily protein","protein_coding" "Glyma.20G198300","No alias","Glycine max","structural maintenance of chromosomes 5","protein_coding" "GRMZM2G098214","No alias","Zea mays","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding" "HORVU0Hr1G006640.1","No alias","Hordeum vulgare","component *(SMU1) of SMU splicing factor complex","protein_coding" "HORVU1Hr1G014080.2","No alias","Hordeum vulgare","component *(mL105) of large mitoribosomal-subunit proteome","protein_coding" "HORVU1Hr1G042560.3","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU1Hr1G047690.1","No alias","Hordeum vulgare","cofactor of post-CCT Tubulin folding pathway *(TFC-D)","protein_coding" "HORVU1Hr1G072110.1","No alias","Hordeum vulgare","subunit zeta of cargo adaptor F-subcomplex","protein_coding" "HORVU1Hr1G078030.47","No alias","Hordeum vulgare","TruD-type tRNA pseudouridine synthase","protein_coding" "HORVU1Hr1G079900.2","No alias","Hordeum vulgare","flap structure-specific endonuclease *(FEN1) & flap structure-specific endonuclease *(FEN1)","protein_coding" "HORVU2Hr1G011580.27","No alias","Hordeum vulgare","component *(CPSF160/Yhh1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex","protein_coding" "HORVU2Hr1G029240.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU2Hr1G041800.16","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU2Hr1G045490.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU2Hr1G045500.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU2Hr1G048220.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU2Hr1G058940.3","No alias","Hordeum vulgare","miRNA/siRNA methyltransferase *(HEN1)","protein_coding" "HORVU2Hr1G066740.2","No alias","Hordeum vulgare","component *(TRM61) of TRM61-TRM6 tRNA adenosine-methyltransferase complex & EC_2.1 transferase transferring one-carbon group","protein_coding" "HORVU2Hr1G075470.2","No alias","Hordeum vulgare","SnRK2 SNF1-related protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU3Hr1G023970.2","No alias","Hordeum vulgare","glutaredoxin maturation factor (GRXS15) of iron-sulfur cluster assembly machinery","protein_coding" "HORVU3Hr1G045270.2","No alias","Hordeum vulgare","calcium-permeable channel *(OSCA)","protein_coding" "HORVU3Hr1G070960.2","No alias","Hordeum vulgare","Golgin-type membrane tethering protein *(GC1)","protein_coding" "HORVU3Hr1G077250.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU4Hr1G000930.1","No alias","Hordeum vulgare","EC_2.3 acyltransferase","protein_coding" "HORVU4Hr1G014720.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU4Hr1G047580.2","No alias","Hordeum vulgare","core component *(GAR1) of H/ACA snoRNP RNA pseudouridylation complex","protein_coding" "HORVU4Hr1G054060.4","No alias","Hordeum vulgare","argininosuccinate lyase & EC_4.3 carbon-nitrogen lyase","protein_coding" "HORVU4Hr1G059150.6","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU4Hr1G061650.10","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU4Hr1G067650.2","No alias","Hordeum vulgare","EC_6.1 ligase forming carbon-oxygen bond & methionine-tRNA ligase","protein_coding" "HORVU4Hr1G077000.2","No alias","Hordeum vulgare","pseudouridine monophosphate glycosylase *(PUMY)","protein_coding" "HORVU5Hr1G002000.8","No alias","Hordeum vulgare","neutral ceramidase *(NCER) & EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond","protein_coding" "HORVU5Hr1G019030.9","No alias","Hordeum vulgare","EC_2.7 transferase transferring phosphorus-containing group & pyrophosphate-dependent phosphofructokinase","protein_coding" "HORVU5Hr1G027730.2","No alias","Hordeum vulgare","subunit beta of phenylalanine-tRNA ligase complex","protein_coding" "HORVU5Hr1G027890.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G051310.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G057610.14","No alias","Hordeum vulgare","CWF19-type post-transcriptionally regulatory factor","protein_coding" "HORVU5Hr1G074920.10","No alias","Hordeum vulgare","component *(bS16m) of small mitoribosomal-subunit proteome","protein_coding" "HORVU5Hr1G075110.3","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G105040.5","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G115320.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G116970.9","No alias","Hordeum vulgare","tRNA adenosine-methyltransferase *(TRM13)","protein_coding" "HORVU5Hr1G119260.1","No alias","Hordeum vulgare","component *(mL40) of large mitoribosomal-subunit proteome","protein_coding" "HORVU6Hr1G051930.3","No alias","Hordeum vulgare","histone chaperone *(NRP)","protein_coding" "HORVU6Hr1G053890.9","No alias","Hordeum vulgare","component *(NOC1) of ribosomal-subunit proteome nuclear export complex","protein_coding" "HORVU6Hr1G059530.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU6Hr1G066930.19","No alias","Hordeum vulgare","N2-acetylornithine deacetylase","protein_coding" "HORVU6Hr1G094400.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU7Hr1G008880.2","No alias","Hordeum vulgare","RNA editing factor *(MORF)","protein_coding" "HORVU7Hr1G017670.6","No alias","Hordeum vulgare","proteolytic component *(ClpP2) of mitochondrion Clp-type protease complex","protein_coding" "HORVU7Hr1G027350.3","No alias","Hordeum vulgare","component *(Metaxin) of outer mitochondrion membrane SAM insertion system","protein_coding" "HORVU7Hr1G027760.1","No alias","Hordeum vulgare","component *(eS30) of small ribosomal-subunit (SSU) proteome","protein_coding" "HORVU7Hr1G035870.4","No alias","Hordeum vulgare","assembly factor involved in RuBisCo assembly *(RbcX)","protein_coding" "HORVU7Hr1G043750.22","No alias","Hordeum vulgare","mannosyltransferase-II *(PIG-V)","protein_coding" "HORVU7Hr1G045770.7","No alias","Hordeum vulgare","microtubule-associated protein *(MAP65-2)","protein_coding" "HORVU7Hr1G054920.1","No alias","Hordeum vulgare","component *(Tim8) of inner mitochondrion membrane TIM22 insertion system","protein_coding" "HORVU7Hr1G065990.6","No alias","Hordeum vulgare","regulatory protein *(GluTRBP) of glutamyl-tRNA reductase activity","protein_coding" "HORVU7Hr1G069460.4","No alias","Hordeum vulgare","Hsp90-co-chaperone *(P23)","protein_coding" "HORVU7Hr1G087590.9","No alias","Hordeum vulgare","active component *(ALA) of ALA-ALIS flippase complex & P4-type ATPase component *(ALA) of phospholipid flippase complex & EC_3.6 hydrolase acting on acid anhydride","protein_coding" "HORVU7Hr1G099340.17","No alias","Hordeum vulgare","EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU7Hr1G115780.1","No alias","Hordeum vulgare","component *(uS5m) of small mitoribosomal-subunit proteome","protein_coding" "HORVU7Hr1G118230.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "Kfl00006_0550","kfl00006_0550_v1.1","Klebsormidium nitens","(at3g20050 : 798.0) Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1).; T-complex protein 1 alpha subunit (TCP-1); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, alpha subunit (InterPro:IPR012715); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 17155 Blast hits to 17114 proteins in 3594 species: Archae - 808; Bacteria - 7960; Metazoa - 2159; Fungi - 1408; Plants - 801; Viruses - 0; Other Eukaryotes - 4019 (source: NCBI BLink). & (p40412|tcpe1_avesa : 236.0) T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K19) - Avena sativa (Oat) & (reliability: 1596.0) & (original description: no original description)","protein_coding" "Kfl00009_0110","kfl00009_0110_v1.1","Klebsormidium nitens","(at3g18630 : 321.0) Encodes a uracil-DNA glycosylase (UDG) involved in a base excision DNA repair pathway in mitochondria.; uracil dna glycosylase (UNG); FUNCTIONS IN: uracil DNA N-glycosylase activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Uracil-DNA glycosylase (InterPro:IPR002043), Uracil-DNA glycosylase-like (InterPro:IPR005122); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10550.1); Has 5606 Blast hits to 5606 proteins in 2219 species: Archae - 2; Bacteria - 4117; Metazoa - 124; Fungi - 141; Plants - 47; Viruses - 234; Other Eukaryotes - 941 (source: NCBI BLink). & (reliability: 642.0) & (original description: no original description)","protein_coding" "Kfl00010_0220","kfl00010_0220_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00011_0170","kfl00011_0170_v1.1","Klebsormidium nitens","(at2g45150 : 325.0) cytidinediphosphate diacylglycerol synthase 4; CONTAINS InterPro DOMAIN/s: Phosphatidate cytidylyltransferase (InterPro:IPR000374); BEST Arabidopsis thaliana protein match is: cytidinediphosphate diacylglycerol synthase 5 (TAIR:AT3G60620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 650.0) & (original description: no original description)","protein_coding" "Kfl00011_0470","kfl00011_0470_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00013_0480","kfl00013_0480_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00014_0330","kfl00014_0330_v1.1","Klebsormidium nitens","(at3g02870 : 147.0) Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis.; VTC4; FUNCTIONS IN: 3'(2'),5'-bisphosphate nucleotidase activity, L-galactose-1-phosphate phosphatase activity, inositol or phosphatidylinositol phosphatase activity, inositol-1(or 4)-monophosphatase activity; INVOLVED IN: sulfur metabolic process, L-ascorbic acid biosynthetic process, response to karrikin, response to cold, inositol biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase, conserved site (InterPro:IPR020550), Inositol monophosphatase (InterPro:IPR000760), Inositol monophosphatase, Lithium-sensitive (InterPro:IPR020552), Inositol monophosphatase, metal-binding site (InterPro:IPR020583); BEST Arabidopsis thaliana protein match is: myo-inositol monophosphatase like 1 (TAIR:AT1G31190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (o49071|impp_mescr : 133.0) Inositol monophosphatase (EC 3.1.3.25) (IMPase) (IMP) (Inositol-1(or 4)-monophosphatase) - Mesembryanthemum crystallinum (Common ice plant) & (reliability: 294.0) & (original description: no original description)","protein_coding" "Kfl00017_0480","kfl00017_0480_v1.1","Klebsormidium nitens","(at1g10490 : 1082.0) CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1726 (InterPro:IPR013562), Domain of unknown function DUF699, exodeoxyribonuclease V alpha chain (InterPro:IPR007807); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (TAIR:AT3G57940.1); Has 1351 Blast hits to 1310 proteins in 616 species: Archae - 139; Bacteria - 698; Metazoa - 170; Fungi - 143; Plants - 51; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). & (reliability: 2164.0) & (original description: no original description)","protein_coding" "Kfl00031_0250","kfl00031_0250_v1.1","Klebsormidium nitens","(at4g11010 : 224.0) nucleoside diphosphate kinase 3 (ndpk3), located to the inter-membrane space in mitochondria; nucleoside diphosphate kinase 3 (NDPK3); FUNCTIONS IN: nucleoside diphosphate kinase activity, cobalt ion binding, zinc ion binding, ATP binding; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion, mitochondrial inner membrane, plastid; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: Nucleoside diphosphate kinase family protein (TAIR:AT4G23900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q8rxa8|ndk4_spiol : 224.0) Nucleoside diphosphate kinase 4, chloroplast precursor (EC 2.7.4.6) (Nucleoside diphosphate kinase IV) (NDK IV) (NDP kinase IV) (NDPK IV) (Nucleoside diphosphate kinase III) - Spinacia oleracea (Spinach) & (reliability: 448.0) & (original description: no original description)","protein_coding" "Kfl00033_0120","kfl00033_0120_v1.1","Klebsormidium nitens","(at2g44270 : 537.0) Encodes ROL5, a repressor of lrx1 mutants that develop aberrant root hairs. ROL5 is a homolog of yeast Ncs6p that affects TOR signaling. The target of rapamycin (TOR) pathway is a major regulator of cell growth in eukaryotes, and inhibition of this pathway by rapamycin reduces cell growth. ROL5 might function as a mitochondrial component of the TOR pathway that influences the plant's response to ROS (reactive oxygen species).; repressor of lrx1 (ROL5); FUNCTIONS IN: ATP binding; INVOLVED IN: response to reactive oxygen species, regulation of plant-type cell wall organization or biogenesis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), PP-loop (InterPro:IPR011063), 2-thiocytidine tRNA biosynthesis protein, TtcA (InterPro:IPR012089); BEST Arabidopsis thaliana protein match is: 2-thiocytidine tRNA biosynthesis protein, TtcA (TAIR:AT1G76170.1). & (reliability: 1074.0) & (original description: no original description)","protein_coding" "Kfl00044_0010","kfl00044_0010_v1.1","Klebsormidium nitens","(at1g26665 : 116.0) Mediator complex, subunit Med10; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med10 (InterPro:IPR019145); BEST Arabidopsis thaliana protein match is: Mediator complex, subunit Med10 (TAIR:AT5G41910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 214.0) & (original description: no original description)","protein_coding" "Kfl00048_0070","kfl00048_0070_v1.1","Klebsormidium nitens","(at5g37530 : 451.0) NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: co-factor for nitrate, reductase and xanthine dehydrogenase 5 (TAIR:AT5G55130.1); Has 12378 Blast hits to 12300 proteins in 2371 species: Archae - 214; Bacteria - 8305; Metazoa - 788; Fungi - 632; Plants - 298; Viruses - 0; Other Eukaryotes - 2141 (source: NCBI BLink). & (reliability: 902.0) & (original description: no original description)","protein_coding" "Kfl00049_0100","kfl00049_0100_v1.1","Klebsormidium nitens","(at1g27450 : 215.0) Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP.; adenine phosphoribosyl transferase 1 (APT1); CONTAINS InterPro DOMAIN/s: Adenine phosphoribosyl transferase (InterPro:IPR005764), Phosphoribosyltransferase (InterPro:IPR000836); BEST Arabidopsis thaliana protein match is: adenine phosphoribosyl transferase 3 (TAIR:AT4G22570.1). & (q43199|apt1_wheat : 214.0) Adenine phosphoribosyltransferase 1 (EC 2.4.2.7) (APRT 1) - Triticum aestivum (Wheat) & (reliability: 430.0) & (original description: no original description)","protein_coding" "Kfl00049_0310","kfl00049_0310_v1.1","Klebsormidium nitens","(at1g19880 : 442.0) Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1); Has 17859 Blast hits to 6314 proteins in 497 species: Archae - 78; Bacteria - 2347; Metazoa - 6181; Fungi - 1100; Plants - 2708; Viruses - 16; Other Eukaryotes - 5429 (source: NCBI BLink). & (reliability: 884.0) & (original description: no original description)","protein_coding" "Kfl00053_0360","kfl00053_0360_v1.1","Klebsormidium nitens","(at5g65860 : 402.0) ankyrin repeat family protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Arginine N-methyltransferase 2 (InterPro:IPR017408), Methyltransferase type 11 (InterPro:IPR013216), Ankyrin repeat (InterPro:IPR002110); Has 14669 Blast hits to 7820 proteins in 738 species: Archae - 65; Bacteria - 1760; Metazoa - 7798; Fungi - 1170; Plants - 439; Viruses - 38; Other Eukaryotes - 3399 (source: NCBI BLink). & (reliability: 804.0) & (original description: no original description)","protein_coding" "Kfl00054_0410","kfl00054_0410_v1.1","Klebsormidium nitens","(at1g16870 : 117.0) mitochondrial 28S ribosomal protein S29-related; CONTAINS InterPro DOMAIN/s: Ribosomal protein S23/S29, mitochondrial (InterPro:IPR019368); Has 239 Blast hits to 239 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 38; Plants - 38; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description)","protein_coding" "Kfl00056_0170","kfl00056_0170_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00071_0020","kfl00071_0020_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00071_0220","kfl00071_0220_v1.1","Klebsormidium nitens","(q852s5|ndk2_tobac : 233.0) Nucleoside diphosphate kinase 2, chloroplast precursor (EC 2.7.4.6) (Nucleoside diphosphate kinase II) (NDK II) (NDP kinase II) (NDPK II) - Nicotiana tabacum (Common tobacco) & (at5g63310 : 225.0) Maintains intracellular dNTP levels except ATP. Plays a role in response to oxidative stress and UV. Involved in phytochrome-mediated light signaling. Participates in auxin-regulated processes, partly through the modulation of auxin transport. H-bonding with His-197 inside the nucleotide-binding pocket is critical for NDPK2 functioning.; nucleoside diphosphate kinase 2 (NDPK2); FUNCTIONS IN: nucleoside diphosphate kinase activity, protein binding, ATP binding; INVOLVED IN: response to UV, auxin mediated signaling pathway, response to hydrogen peroxide, red, far-red light phototransduction; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoside diphosphate kinase, core (InterPro:IPR001564); BEST Arabidopsis thaliana protein match is: Nucleoside diphosphate kinase family protein (TAIR:AT4G09320.1); Has 9088 Blast hits to 8922 proteins in 2598 species: Archae - 291; Bacteria - 4641; Metazoa - 1094; Fungi - 170; Plants - 375; Viruses - 117; Other Eukaryotes - 2400 (source: NCBI BLink). & (reliability: 450.0) & (original description: no original description)","protein_coding" "Kfl00072_0230","kfl00072_0230_v1.1","Klebsormidium nitens","(at1g01860 : 201.0) dimethyladenosine transferase; PALEFACE 1 (PFC1); FUNCTIONS IN: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity; INVOLVED IN: response to cold; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2); Has 9632 Blast hits to 9628 proteins in 3006 species: Archae - 228; Bacteria - 6144; Metazoa - 264; Fungi - 142; Plants - 116; Viruses - 0; Other Eukaryotes - 2738 (source: NCBI BLink). & (reliability: 402.0) & (original description: no original description)","protein_coding" "Kfl00077_0140","kfl00077_0140_v1.1","Klebsormidium nitens","(at1g71750 : 189.0) Encodes a protein with hypoxanthine-guanine-phosphoribosyltransferase activity. Unlike some related enzymes, it does not appear to act on xanthine in vitro. The enzyme catalyzes reactions occurring in both directions, but appears to prefer acting on guanine, followed by hypoxanthine, in vitro. The enzyme is likely to function in purine salvage pathways and appears to be important for seed germination.; Hypoxanthine-guanine phosphoribosyltransferase (HGPT); FUNCTIONS IN: transferase activity, hypoxanthine phosphoribosyltransferase activity; INVOLVED IN: guanine metabolic process, nucleoside metabolic process, seed germination, hypoxanthine metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hypoxanthine phosphoribosyl transferase (InterPro:IPR005904), Phosphoribosyltransferase (InterPro:IPR000836). & (reliability: 378.0) & (original description: no original description)","protein_coding" "Kfl00077_0150","kfl00077_0150_v1.1","Klebsormidium nitens","(at2g32230 : 328.0) RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs.; proteinaceous RNase P 1 (PRORP1); CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528), Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: proteinaceous RNase P 3 (TAIR:AT4G21900.1); Has 2190 Blast hits to 1686 proteins in 140 species: Archae - 0; Bacteria - 0; Metazoa - 111; Fungi - 4; Plants - 1945; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink). & (reliability: 604.0) & (original description: no original description)","protein_coding" "Kfl00079_0160","kfl00079_0160_v1.1","Klebsormidium nitens","(p56336|if5a4_soltu : 240.0) Eukaryotic translation initiation factor 5A-4 (eIF-5A-4) (eIF-4D) - Solanum tuberosum (Potato) & (at1g13950 : 232.0) Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced.; eukaryotic elongation factor 5A-1 (ELF5A-1); FUNCTIONS IN: ribosome binding, RNA binding, translation elongation factor activity, translation initiation factor activity; INVOLVED IN: translational initiation, xylem development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, IF5A, hypusine site (InterPro:IPR019769), Translation protein SH3-like, subgroup (InterPro:IPR014722), Translation elongation factor, IF5A (InterPro:IPR001884), Translation elongation factor, IF5A C-terminal (InterPro:IPR020189), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: eukaryotic elongation factor 5A-3 (TAIR:AT1G69410.1); Has 1356 Blast hits to 1355 proteins in 415 species: Archae - 264; Bacteria - 0; Metazoa - 366; Fungi - 246; Plants - 261; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink). & (reliability: 464.0) & (original description: no original description)","protein_coding" "Kfl00083_0150","kfl00083_0150_v1.1","Klebsormidium nitens","(at2g37020 : 207.0) Translin family protein; FUNCTIONS IN: sequence-specific DNA binding, DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translin, C-terminal (InterPro:IPR016069), Translin (InterPro:IPR002848), Translin, N-terminal (InterPro:IPR016068). & (reliability: 414.0) & (original description: no original description)","protein_coding" "Kfl00104_0320","kfl00104_0320_v1.1","Klebsormidium nitens","(at2g36130 : 229.0) Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: cyclophilin71 (TAIR:AT3G44600.1); Has 17839 Blast hits to 17712 proteins in 2717 species: Archae - 108; Bacteria - 7579; Metazoa - 2864; Fungi - 1418; Plants - 1272; Viruses - 0; Other Eukaryotes - 4598 (source: NCBI BLink). & (q41651|cypb_vicfa : 135.0) Peptidyl-prolyl cis-trans isomerase, chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-binding protein) (CYP B) - Vicia faba (Broad bean) & (reliability: 458.0) & (original description: no original description)","protein_coding" "Kfl00109_0310","kfl00109_0310_v1.1","Klebsormidium nitens","(at5g28500 : 204.0) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04550.1). & (reliability: 408.0) & (original description: no original description)","protein_coding" "Kfl00116_0270","kfl00116_0270_v1.1","Klebsormidium nitens","(at5g23200 : 166.0) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 332.0) & (original description: no original description)","protein_coding" "Kfl00117_0110","kfl00117_0110_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00120_0260","kfl00120_0260_v1.1","Klebsormidium nitens","(at5g14260 : 545.0) Rubisco methyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT3G07670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1090.0) & (original description: no original description)","protein_coding" "Kfl00126_0010","kfl00126_0010_v1.1","Klebsormidium nitens","(at3g12080 : 574.0) embryo defective 2738 (emb2738); FUNCTIONS IN: GTP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP-binding, EngA (InterPro:IPR016484), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP binding;GTP binding (TAIR:AT5G39960.1); Has 46500 Blast hits to 25681 proteins in 2968 species: Archae - 249; Bacteria - 36237; Metazoa - 387; Fungi - 432; Plants - 421; Viruses - 0; Other Eukaryotes - 8774 (source: NCBI BLink). & (reliability: 1148.0) & (original description: no original description)","protein_coding" "Kfl00129_0030","kfl00129_0030_v1.1","Klebsormidium nitens","(at1g59990 : 167.0) DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G40700.1); Has 57869 Blast hits to 34290 proteins in 2955 species: Archae - 517; Bacteria - 30307; Metazoa - 8550; Fungi - 6961; Plants - 3872; Viruses - 6; Other Eukaryotes - 7656 (source: NCBI BLink). & (reliability: 334.0) & (original description: no original description)","protein_coding" "Kfl00137_0130","kfl00137_0130_v1.1","Klebsormidium nitens","(at1g03330 : 167.0) Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), U6 snRNA-associated Sm-like protein LSm2 (InterPro:IPR016654), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); Has 762 Blast hits to 762 proteins in 209 species: Archae - 2; Bacteria - 0; Metazoa - 303; Fungi - 225; Plants - 97; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink). & (reliability: 334.0) & (original description: no original description)","protein_coding" "Kfl00137_0180","kfl00137_0180_v1.1","Klebsormidium nitens","(at5g01590 : 81.3) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 59 proteins in 31 species: Archae - 0; Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (reliability: 162.6) & (original description: no original description)","protein_coding" "Kfl00140_0070","kfl00140_0070_v1.1","Klebsormidium nitens","(at3g11830 : 812.0) TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), T-complex protein 1, eta subunit (InterPro:IPR012720), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: T-complex protein 1 alpha subunit (TAIR:AT3G20050.1). & (p54411|tcpe2_avesa : 239.0) T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K36) - Avena sativa (Oat) & (reliability: 1624.0) & (original description: no original description)","protein_coding" "Kfl00150_0160","kfl00150_0160_v1.1","Klebsormidium nitens","(at3g04650 : 403.0) FAD/NAD(P)-binding oxidoreductase family protein; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT1G56000.1); Has 902 Blast hits to 899 proteins in 231 species: Archae - 14; Bacteria - 382; Metazoa - 7; Fungi - 2; Plants - 133; Viruses - 0; Other Eukaryotes - 364 (source: NCBI BLink). & (reliability: 806.0) & (original description: no original description)","protein_coding" "Kfl00161_0060","kfl00161_0060_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00165_0120","kfl00165_0120_v1.1","Klebsormidium nitens","(at2g31190 : 421.0) Encodes RUS2 (root UVB sensitive2), a DUF647-containing protein that is homologous to the RUS1 protein. RUS2 works with RUS1 in a root UV-B sensing pathway that plays a vital role in Arabidopsis early seedling morphogenesis and development. Required for auxin polar transport.; ROOT UV-B SENSITIVE 2 (RUS2); INVOLVED IN: response to UV-B, auxin polar transport; LOCATED IN: mitochondrion, plastid, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT5G49820.1). & (reliability: 842.0) & (original description: no original description)","protein_coding" "Kfl00181_0140","kfl00181_0140_v1.1","Klebsormidium nitens","(at3g02660 : 472.0) EMBRYO DEFECTIVE 2768 (emb2768); FUNCTIONS IN: RNA binding, tyrosine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (InterPro:IPR002307), RNA-binding S4 (InterPro:IPR002942), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); Has 9022 Blast hits to 9013 proteins in 2715 species: Archae - 16; Bacteria - 5542; Metazoa - 116; Fungi - 145; Plants - 38; Viruses - 0; Other Eukaryotes - 3165 (source: NCBI BLink). & (reliability: 944.0) & (original description: no original description)","protein_coding" "Kfl00194_0180","kfl00194_0180_v1.1","Klebsormidium nitens","(at3g10690 : 898.0) DNA GYRASE A (GYRA); FUNCTIONS IN: DNA topoisomerase activity, catalytic activity, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: mitochondrion, chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA gyrase, subunit A (InterPro:IPR005743), DNA topoisomerase, type IIA, subunit A/C-terminal (InterPro:IPR002205), DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta (InterPro:IPR013758), DNA topoisomerase, type IIA, subunit A, alpha-helical (InterPro:IPR013757), DNA topoisomerase, type IIA, central (InterPro:IPR013760), DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel (InterPro:IPR006691); BEST Arabidopsis thaliana protein match is: topoisomerase II (TAIR:AT3G23890.1); Has 22353 Blast hits to 21396 proteins in 3265 species: Archae - 84; Bacteria - 12907; Metazoa - 182; Fungi - 204; Plants - 111; Viruses - 99; Other Eukaryotes - 8766 (source: NCBI BLink). & (q7xzf7|gyra_orysa : 843.0) Probable DNA gyrase subunit A, chloroplast/mitochondrial precursor (EC 5.99.1.3) - Oryza sativa (Rice) & (reliability: 1796.0) & (original description: no original description)","protein_coding" "Kfl00195_0150","kfl00195_0150_v1.1","Klebsormidium nitens","(at5g42650 : 264.0) Encodes a member of the cytochrome p450 CYP74 gene family that functions as an allene oxide synthase. This enzyme catalyzes dehydration of the hydroperoxide to an unstable allene oxide in the JA biosynthetic pathway. It shows a dual catalytic activity, the major one being a 13-AOS but also expressing a 9-AOS activity.; allene oxide synthase (AOS); FUNCTIONS IN: hydro-lyase activity, allene oxide synthase activity, oxygen binding; INVOLVED IN: in 7 processes; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128); BEST Arabidopsis thaliana protein match is: hydroperoxide lyase 1 (TAIR:AT4G15440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q7y0c8|c74a1_orysa : 257.0) Cytochrome P450 74A1, chloroplast precursor (EC 4.2.1.92) (Allene oxide synthase 1) (Hydroperoxide dehydrase 1) - Oryza sativa (Rice) & (reliability: 528.0) & (original description: no original description)","protein_coding" "Kfl00212_0160","kfl00212_0160_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00226_0060","kfl00226_0060_v1.1","Klebsormidium nitens","(at3g26570 : 507.0) low affinity phosphate transporter; phosphate transporter 2;1 (PHT2;1); FUNCTIONS IN: low affinity phosphate transmembrane transporter activity; INVOLVED IN: phosphate transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphate transporter (InterPro:IPR001204); Has 12859 Blast hits to 5765 proteins in 1814 species: Archae - 502; Bacteria - 8606; Metazoa - 781; Fungi - 657; Plants - 230; Viruses - 6; Other Eukaryotes - 2077 (source: NCBI BLink). & (reliability: 1014.0) & (original description: no original description)","protein_coding" "Kfl00230_0080","kfl00230_0080_v1.1","Klebsormidium nitens","(q9sbn4|pgkh_volca : 240.0) Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) - Volvox carteri & (at3g12780 : 228.0) nuclear phosphoglycerate kinase (PGK1); phosphoglycerate kinase 1 (PGK1); FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: response to cadmium ion, response to cold, glycolysis, peptidyl-cysteine S-nitrosylation; LOCATED IN: in 11 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901), Phosphoglycerate kinase, conserved site (InterPro:IPR015911); BEST Arabidopsis thaliana protein match is: Phosphoglycerate kinase family protein (TAIR:AT1G56190.1); Has 10843 Blast hits to 10817 proteins in 3010 species: Archae - 254; Bacteria - 5217; Metazoa - 451; Fungi - 193; Plants - 515; Viruses - 0; Other Eukaryotes - 4213 (source: NCBI BLink). & (reliability: 452.0) & (original description: no original description)","protein_coding" "Kfl00248_0040","kfl00248_0040_v1.1","Klebsormidium nitens","(at5g49010 : 163.0) Similar to the SLD5 component of GINS complex, which in other organism was shown to be involved in the initiation of DNA replication.; SYNTHETIC LETHALITY WITH DPB11-1 5 (SLD5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA-dependent DNA replication initiation; LOCATED IN: GINS complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GINS complex, subunit Sld5 (InterPro:IPR008591), GINS complex (InterPro:IPR021151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 326.0) & (original description: no original description)","protein_coding" "Kfl00258_0030","kfl00258_0030_v1.1","Klebsormidium nitens","(at5g01600 : 275.0) Encodes a ferretin protein that is targeted to the chloroplast. Member of a Ferritin gene family. Gene expression is induced in response to iron overload and by nitric oxide. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.; ferretin 1 (FER1); FUNCTIONS IN: ferric iron binding, iron ion binding; INVOLVED IN: in 12 processes; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ferritin, N-terminal (InterPro:IPR001519), Ferritin-related (InterPro:IPR012347), Ferritin-like (InterPro:IPR009040), Ferritin, conserved site (InterPro:IPR014034), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Ferritin/Dps protein (InterPro:IPR008331); BEST Arabidopsis thaliana protein match is: ferritin 4 (TAIR:AT2G40300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q41709|fri2_vigun : 272.0) Ferritin-2, chloroplast precursor (EC 1.16.3.1) - Vigna unguiculata (Cowpea) & (reliability: 550.0) & (original description: no original description)","protein_coding" "Kfl00263_0050","kfl00263_0050_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00270_0220","kfl00270_0220_v1.1","Klebsormidium nitens","(at5g14600 : 319.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: tRNA (adenine-N1-)-methyltransferase activity; INVOLVED IN: tRNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: tRNA methyltransferase complex GCD14 subunit (InterPro:IPR014816); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 638.0) & (original description: no original description)","protein_coding" "Kfl00272_0110","kfl00272_0110_v1.1","Klebsormidium nitens","(at3g11920 : 334.0) glutaredoxin-related; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: intracellular signaling pathway, cell redox homeostasis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336), DEP domain (InterPro:IPR000591), Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: electron carriers;protein disulfide oxidoreductases (TAIR:AT4G08550.1); Has 2850 Blast hits to 2806 proteins in 762 species: Archae - 4; Bacteria - 1389; Metazoa - 366; Fungi - 36; Plants - 426; Viruses - 0; Other Eukaryotes - 629 (source: NCBI BLink). & (reliability: 668.0) & (original description: no original description)","protein_coding" "Kfl00289_0060","kfl00289_0060_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00297_0130","kfl00297_0130_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00307_0030","kfl00307_0030_v1.1","Klebsormidium nitens","(at4g15770 : 268.0) RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: ribosome assembly, ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Ribosome biogenesis factor NIP7-like (InterPro:IPR005155), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Ribosome biogenesis factor, NIP7 (InterPro:IPR016686); Has 438 Blast hits to 438 proteins in 213 species: Archae - 5; Bacteria - 0; Metazoa - 151; Fungi - 132; Plants - 49; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink). & (reliability: 536.0) & (original description: no original description)","protein_coding" "Kfl00321_0140","kfl00321_0140_v1.1","Klebsormidium nitens","(at3g61050 : 288.0) NTMC2T4; FUNCTIONS IN: lipid binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell, callus, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 region (InterPro:IPR020477), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G61030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 576.0) & (original description: no original description)","protein_coding" "Kfl00338_0100","kfl00338_0100_v1.1","Klebsormidium nitens","(at4g02390 : 565.0) Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification .; poly(ADP-ribose) polymerase (PP); FUNCTIONS IN: NAD+ ADP-ribosyltransferase activity, nucleic acid binding; INVOLVED IN: protein amino acid ADP-ribosylation; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), WGR (InterPro:IPR008893), Poly(ADP-ribose) polymerase, regulatory domain (InterPro:IPR004102), Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317); BEST Arabidopsis thaliana protein match is: poly(ADP-ribose) polymerase 2 (TAIR:AT2G31320.1); Has 1052 Blast hits to 1033 proteins in 170 species: Archae - 0; Bacteria - 15; Metazoa - 556; Fungi - 107; Plants - 166; Viruses - 5; Other Eukaryotes - 203 (source: NCBI BLink). & (o50017|parp2_maize : 546.0) Poly [ADP-ribose] polymerase 2 (EC 2.4.2.30) (PARP-2) (ADPRT 2) (NAD(+) ADP-ribosyltransferase 2) (Poly[ADP-ribose] synthetase 2) - Zea mays (Maize) & (reliability: 1130.0) & (original description: no original description)","protein_coding" "Kfl00343_0130","kfl00343_0130_v1.1","Klebsormidium nitens","(at5g17620 : 179.0) CONTAINS InterPro DOMAIN/s: Plant nuclear matrix 1 (InterPro:IPR010604); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 358.0) & (original description: no original description)","protein_coding" "Kfl00370_0030","kfl00370_0030_v1.1","Klebsormidium nitens","(at5g52520 : 729.0) OVULE ABORTION 6 (OVA6); FUNCTIONS IN: proline-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: regulation of photosynthesis, embryo sac development, seed development, tRNA aminoacylation for protein translation, ovule development; LOCATED IN: mitochondrion, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Prolyl-tRNA synthetase, class IIa, prokaryotic-type (InterPro:IPR004499), Prolyl-tRNA synthetase, class II, C-terminal (InterPro:IPR016061), Anticodon-binding (InterPro:IPR004154), Prolyl-tRNA synthetase, class II (InterPro:IPR017449), Prolyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR002316), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Class II aaRS and biotin synthetases superfamily protein (TAIR:AT3G62120.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1458.0) & (original description: no original description)","protein_coding" "Kfl00377_0020","kfl00377_0020_v1.1","Klebsormidium nitens","(at5g64420 : 214.0) DNA polymerase V family; FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding; INVOLVED IN: DNA replication, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase V (InterPro:IPR007015); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 428.0) & (original description: no original description)","protein_coding" "Kfl00414_0100","kfl00414_0100_v1.1","Klebsormidium nitens","(at5g02860 : 187.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G18940.1); Has 78068 Blast hits to 16233 proteins in 339 species: Archae - 4; Bacteria - 143; Metazoa - 1692; Fungi - 1544; Plants - 71427; Viruses - 0; Other Eukaryotes - 3258 (source: NCBI BLink). & (q76c99|rf1_orysa : 177.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 374.0) & (original description: no original description)","protein_coding" "Kfl00415_0100","kfl00415_0100_v1.1","Klebsormidium nitens","(at5g13960 : 389.0) Encodes a histone 3 lysine 9 specific methyltransferase involved in the maintenance of DNA methylation. SUVH4/KYP is a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. In kyp mutants, there is a loss of CpNpG methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the latter two. There is also evidence that KYP/SUVH4 might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres.; SU(VAR)3-9 homolog 4 (SUVH4); FUNCTIONS IN: double-stranded methylated DNA binding, methyl-CpNpG binding, methyl-CpG binding, histone methyltransferase activity (H3-K9 specific), methyl-CpNpN binding; INVOLVED IN: maintenance of DNA methylation, histone methylation, peptidyl-lysine methylation, histone H3-K9 methylation; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), SRA-YDG (InterPro:IPR003105), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 6 (TAIR:AT2G22740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 778.0) & (original description: no original description)","protein_coding" "Kfl00424_0060","kfl00424_0060_v1.1","Klebsormidium nitens","(at3g19184 : 87.0) AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G42700.1); Has 304 Blast hits to 291 proteins in 31 species: Archae - 0; Bacteria - 2; Metazoa - 7; Fungi - 0; Plants - 257; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). & (reliability: 174.0) & (original description: no original description)","protein_coding" "Kfl00512_0040","kfl00512_0040_v1.1","Klebsormidium nitens","(at5g58030 : 296.0) Transport protein particle (TRAPP) component; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194), TRAPP I complex, Trs31 (InterPro:IPR016696); Has 560 Blast hits to 545 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 199; Fungi - 199; Plants - 63; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink). & (reliability: 592.0) & (original description: no original description)","protein_coding" "Kfl00565_0010","kfl00565_0010_v1.1","Klebsormidium nitens","(at4g30220 : 147.0) small nuclear ribonucleoprotein F (RUXF); FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G14285.1). & (reliability: 294.0) & (original description: no original description)","protein_coding" "Kfl00618_0060","kfl00618_0060_v1.1","Klebsormidium nitens","(at5g20890 : 796.0) TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: anchored to plasma membrane, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, beta subunit (InterPro:IPR012716), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 19831 Blast hits to 19435 proteins in 3922 species: Archae - 807; Bacteria - 9602; Metazoa - 2181; Fungi - 1427; Plants - 861; Viruses - 0; Other Eukaryotes - 4953 (source: NCBI BLink). & (p40412|tcpe1_avesa : 301.0) T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K19) - Avena sativa (Oat) & (reliability: 1592.0) & (original description: no original description)","protein_coding" "Kfl00625_0020","kfl00625_0020_v1.1","Klebsormidium nitens","(q41009|toc34_pea : 231.0) Translocase of chloroplast 34 (EC 3.6.5.-) (34 kDa chloroplast outer envelope protein) (GTP-binding protein OEP34) (GTP-binding protein IAP34) - Pisum sativum (Garden pea) & (at5g05000 : 226.0) Outer membrane GTPase protein that may function in import of nuclear encoded proteins into the chloroplast. Phosphorylation of the G-domains regulate translocon assembly.; translocon at the outer envelope membrane of chloroplasts 34 (TOC34); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: protein targeting to chloroplast, chloroplast localization; LOCATED IN: chloroplast outer membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703), Chloroplast protein import component Toc34 (InterPro:IPR005688); BEST Arabidopsis thaliana protein match is: translocon at the outer envelope membrane of chloroplasts 33 (TAIR:AT1G02280.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 438.0) & (original description: no original description)","protein_coding" "Kfl00674_0030","kfl00674_0030_v1.1","Klebsormidium nitens","(at2g31060 : 690.0) elongation factor family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein TypA (InterPro:IPR006298), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor family protein (TAIR:AT5G13650.2). & (o23755|ef2_betvu : 97.4) Elongation factor 2 (EF-2) - Beta vulgaris (Sugar beet) & (reliability: 1380.0) & (original description: no original description)","protein_coding" "Kfl00772_0030","kfl00772_0030_v1.1","Klebsormidium nitens","(at2g37500 : 507.0) arginine biosynthesis protein ArgJ family; FUNCTIONS IN: glutamate N-acetyltransferase activity; INVOLVED IN: arginine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arginine biosynthesis protein ArgJ (InterPro:IPR002813), Peptidase S58 DmpA/arginine biosynthesis protein ArgJ (InterPro:IPR016117); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1014.0) & (original description: no original description)","protein_coding" "LOC_Os01g01400","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g03090","No alias","Oryza sativa","methyltransferase, putative, expressed","protein_coding" "LOC_Os01g05130","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g09800","No alias","Oryza sativa","BTBA1 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed","protein_coding" "LOC_Os01g11990","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g12560","No alias","Oryza sativa","3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed","protein_coding" "LOC_Os01g14140","No alias","Oryza sativa","X8 domain containing protein, expressed","protein_coding" "LOC_Os01g14160","No alias","Oryza sativa","retrotransposon, putative, centromere-specific, expressed","protein_coding" "LOC_Os01g23000","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g23650","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g24710","No alias","Oryza sativa","jacalin-like lectin domain containing protein, expressed","protein_coding" "LOC_Os01g26130","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g27770","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g33800","No alias","Oryza sativa","heat shock protein DnaJ, putative, expressed","protein_coding" "LOC_Os01g35880","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g46620","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g51680","No alias","Oryza sativa","hypothetical protein","protein_coding" "LOC_Os01g52920","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g54700","No alias","Oryza sativa","retrotransposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os01g54960","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g55200","No alias","Oryza sativa","potassium channel KAT1, putative, expressed","protein_coding" "LOC_Os01g56480","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g60750","No alias","Oryza sativa","transposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os01g69174","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g72850","No alias","Oryza sativa","GDSL-motif lipase/hydrolase family protein, putative, expressed","protein_coding" "LOC_Os02g07850","No alias","Oryza sativa","DUF630/DUF632 domains containing protein, putative, expressed","protein_coding" "LOC_Os02g12580","No alias","Oryza sativa","OsPP2Ac-3 - Phosphatase 2A isoform 3 belonging to family 1, expressed","protein_coding" "LOC_Os02g13660","No alias","Oryza sativa","meiosis 5, putative, expressed","protein_coding" "LOC_Os02g15350","No alias","Oryza sativa","dof zinc finger domain containing protein, putative, expressed","protein_coding" "LOC_Os02g38320","No alias","Oryza sativa","BTBZ3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed","protein_coding" "LOC_Os02g39190","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os02g45090","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os02g51420","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os03g02240","No alias","Oryza sativa","AT-GTL1, putative, expressed","protein_coding" "LOC_Os03g02330","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding" "LOC_Os03g03820","No alias","Oryza sativa","adenylate kinase, putative, expressed","protein_coding" "LOC_Os03g04460","No alias","Oryza sativa","outer mitochondrial membrane porin, putative, expressed","protein_coding" "LOC_Os03g07800","No alias","Oryza sativa","RNA recognition motif containing protein, putative, expressed","protein_coding" "LOC_Os03g16950","No alias","Oryza sativa","cysteine-rich repeat secretory protein 55 precursor, putative, expressed","protein_coding" "LOC_Os03g20110","No alias","Oryza sativa","hypothetical protein","protein_coding" "LOC_Os03g24040","No alias","Oryza sativa","seven in absentia protein family domain containing protein, expressed","protein_coding" "LOC_Os03g25650","No alias","Oryza sativa","OsFBX92 - F-box domain containing protein, expressed","protein_coding" "LOC_Os03g27890","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os03g31310","No alias","Oryza sativa","circadian clock coupling factor-related, putative, expressed","protein_coding" "LOC_Os03g45270","No alias","Oryza sativa","CS domain containing protein, putative, expressed","protein_coding" "LOC_Os03g50850","No alias","Oryza sativa","ZOS3-17 - C2H2 zinc finger protein, expressed","protein_coding" "LOC_Os03g51100","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os03g53690","No alias","Oryza sativa","oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed","protein_coding" "LOC_Os03g55630","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os03g58204","No alias","Oryza sativa","ribosomal protein L4, putative, expressed","protein_coding" "LOC_Os03g59550","No alias","Oryza sativa","RNA recognition motif containing protein, putative, expressed","protein_coding" "LOC_Os03g61790","No alias","Oryza sativa","RNA 3-terminal phosphate cyclase, putative, expressed","protein_coding" "LOC_Os03g61960","No alias","Oryza sativa","2Fe-2S iron-sulfur cluster binding domain containing protein, expressed","protein_coding" "LOC_Os03g63620","No alias","Oryza sativa","tetraspanin family protein, putative, expressed","protein_coding" "LOC_Os04g04254","No alias","Oryza sativa","sterol 3-beta-glucosyltransferase, putative, expressed","protein_coding" "LOC_Os04g08470","No alias","Oryza sativa","OsFBX116 - F-box domain containing protein, expressed","protein_coding" "LOC_Os04g25360","No alias","Oryza sativa","tRNA methyltransferase complex GCD14 subunit, putative, expressed","protein_coding" "LOC_Os04g25990","No alias","Oryza sativa","tRNA methyltransferase complex GCD14 subunit, putative, expressed","protein_coding" "LOC_Os04g38700","No alias","Oryza sativa","molybdopterin biosynthesis protein CNX3, putative, expressed","protein_coding" "LOC_Os04g42760","No alias","Oryza sativa","sialyltransferase family domain containing protein, expressed","protein_coding" "LOC_Os04g44090","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os04g45220","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os04g52050","No alias","Oryza sativa","TNP1, putative, expressed","protein_coding" "LOC_Os04g52780","No alias","Oryza sativa","leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed","protein_coding" "LOC_Os04g53940","No alias","Oryza sativa","hypothetical protein","protein_coding" "LOC_Os04g57010","No alias","Oryza sativa","zinc finger C-x8-C-x5-C-x3-H type family protein, expressed","protein_coding" "LOC_Os04g57070","No alias","Oryza sativa","jasmonate O-methyltransferase, putative, expressed","protein_coding" "LOC_Os04g57400","No alias","Oryza sativa","methylthioribose kinase, putative, expressed","protein_coding" "LOC_Os04g58470","No alias","Oryza sativa","choline transporter-related, putative, expressed","protein_coding" "LOC_Os05g03150","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os05g03200","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os05g07830","No alias","Oryza sativa","tRNA methyltransferase complex GCD14 subunit, putative, expressed","protein_coding" "LOC_Os05g08920","No alias","Oryza sativa","late embryogenesis abundant protein, putative, expressed","protein_coding" "LOC_Os05g12200","No alias","Oryza sativa","transposon protein, putative, CACTA, En/Spm sub-class","protein_coding" "LOC_Os05g14080","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os05g18660","No alias","Oryza sativa","OsFBDUF24 - F-box and DUF domain containing protein, expressed","protein_coding" "LOC_Os05g24940","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os05g28960","No alias","Oryza sativa","acyltransferase, putative, expressed","protein_coding" "LOC_Os05g41310","No alias","Oryza sativa","disease resistance protein RGA2, putative, expressed","protein_coding" "LOC_Os05g43560","No alias","Oryza sativa","AGAP007115-PA, putative, expressed","protein_coding" "LOC_Os05g51140","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os06g01490","No alias","Oryza sativa","monocopper oxidase, putative, expressed","protein_coding" "LOC_Os06g02290","No alias","Oryza sativa","retrotransposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os06g07330","No alias","Oryza sativa","OsWAK63 - OsWAK receptor-like protein kinase, expressed","protein_coding" "LOC_Os06g09880","No alias","Oryza sativa","EMB1270, putative, expressed","protein_coding" "LOC_Os06g17290","No alias","Oryza sativa","phosphatidylinositol 3- and 4-kinase family protein, putative, expressed","protein_coding" "LOC_Os06g19360","No alias","Oryza sativa","cadmium tolerance factor, putative, expressed","protein_coding" "LOC_Os06g23040","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os06g24370","No alias","Oryza sativa","retrotransposon, putative, centromere-specific, expressed","protein_coding" "LOC_Os06g29080","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os06g33660","No alias","Oryza sativa","hypothetical protein","protein_coding" "LOC_Os06g34400","No alias","Oryza sativa","zinc finger, C3HC4 type domain containing protein, expressed","protein_coding" "LOC_Os06g34570","No alias","Oryza sativa","retrotransposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os07g02870","No alias","Oryza sativa","DUF538 domain containing protein, putative, expressed","protein_coding" "LOC_Os07g09450","No alias","Oryza sativa","heat shock protein DnaJ, putative, expressed","protein_coding" "LOC_Os07g10830","No alias","Oryza sativa","dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDasubunit precursor, putative, expressed","protein_coding" "LOC_Os07g11970","No alias","Oryza sativa","cytochrome P450, putative, expressed","protein_coding" "LOC_Os07g26570","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os07g38420","No alias","Oryza sativa","pre-mRNA-splicing factor, putative, expressed","protein_coding" "LOC_Os07g44230","No alias","Oryza sativa","ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein, putative, expressed","protein_coding" "LOC_Os07g48300","No alias","Oryza sativa","eukaryotic translation initiation factor 2 subunit beta, putative, expressed","protein_coding" "LOC_Os08g01580","No alias","Oryza sativa","NBS-LRR disease resistance protein, putative, expressed","protein_coding" "LOC_Os08g02120","No alias","Oryza sativa","kinase, pfkB family, putative, expressed","protein_coding" "LOC_Os08g04210","No alias","Oryza sativa","cysteine-rich repeat secretory protein 55 precursor, putative, expressed","protein_coding" "LOC_Os08g05880","No alias","Oryza sativa","Brix domain containing protein, putative, expressed","protein_coding" "LOC_Os08g06400","No alias","Oryza sativa","hypothetical protein","protein_coding" "LOC_Os08g06659","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os08g19650","No alias","Oryza sativa","homeobox protein knotted-1, putative, expressed","protein_coding" "LOC_Os08g33890","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os08g42320","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os08g44240","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding" "LOC_Os09g02530","No alias","Oryza sativa","cyclin-like F-box, putative, expressed","protein_coding" "LOC_Os09g10780","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os09g13720","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os09g20650","No alias","Oryza sativa","OsFBX323 - F-box domain containing protein, expressed","protein_coding" "LOC_Os09g25070","No alias","Oryza sativa","WRKY62, expressed","protein_coding" "LOC_Os09g27710","No alias","Oryza sativa","pollen allergen Cyn d 23, putative, expressed","protein_coding" "LOC_Os09g29120","No alias","Oryza sativa","GRAM domain containing protein, expressed","protein_coding" "LOC_Os09g32300","No alias","Oryza sativa","KH domain-containing protein, putative, expressed","protein_coding" "LOC_Os09g32430","No alias","Oryza sativa","oxidoreductase, putative, expressed","protein_coding" "LOC_Os09g34150","No alias","Oryza sativa","NBS-LRR disease resistance protein, putative, expressed","protein_coding" "LOC_Os09g35690","No alias","Oryza sativa","zinc RING finger protein, putative, expressed","protein_coding" "LOC_Os10g02890","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os10g03840","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os10g05380","No alias","Oryza sativa","retrotransposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os10g09630","No alias","Oryza sativa","retrotransposon protein, putative, unclassified","protein_coding" "LOC_Os10g10434","No alias","Oryza sativa","dimethyladenosine transferase, putative, expressed","protein_coding" "LOC_Os10g14230","No alias","Oryza sativa","transposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os10g33270","No alias","Oryza sativa","cyanate hydratase, putative, expressed","protein_coding" "LOC_Os10g35690","No alias","Oryza sativa","ribosomal protein S18 containing protein, expressed","protein_coding" "LOC_Os10g38750","No alias","Oryza sativa","transposon protein, putative, Mutator sub-class, expressed","protein_coding" "LOC_Os10g39680","No alias","Oryza sativa","CHIT14 - Chitinase family protein precursor, expressed","protein_coding" "LOC_Os10g41510","No alias","Oryza sativa","calcineurin B, putative, expressed","protein_coding" "LOC_Os11g06850","No alias","Oryza sativa","hypothetical protein","protein_coding" "LOC_Os11g13800","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os11g14130","No alias","Oryza sativa","mTERF family protein, expressed","protein_coding" "LOC_Os11g19500","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os11g20580","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os11g25760","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os11g26020","No alias","Oryza sativa","hypothetical protein","protein_coding" "LOC_Os11g34330","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os11g37670","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os11g37960","No alias","Oryza sativa","WIP4 - Wound-induced protein precursor, expressed","protein_coding" "LOC_Os11g48064","No alias","Oryza sativa","hypothetical protein","protein_coding" "LOC_Os12g05230","No alias","Oryza sativa","ATP-dependent RNA helicase, putative, expressed","protein_coding" "LOC_Os12g15680","No alias","Oryza sativa","laccase precursor protein, putative, expressed","protein_coding" "LOC_Os12g17280","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os12g25870","No alias","Oryza sativa","O-methyltransferase, putative, expressed","protein_coding" "LOC_Os12g26680","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os12g30020","No alias","Oryza sativa","cyclin-T1-4, putative, expressed","protein_coding" "LOC_Os12g30824","No alias","Oryza sativa","terpene synthase, putative, expressed","protein_coding" "LOC_Os12g32620","No alias","Oryza sativa","OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed","protein_coding" "LOC_Os12g33020","No alias","Oryza sativa","mitochondrial import inner membrane translocase subunit Tim17, putative, expressed","protein_coding" "LOC_Os12g37630","No alias","Oryza sativa","domain of unknown function family protein, expressed","protein_coding" "LOC_Os12g40150","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os12g40480","No alias","Oryza sativa","H-BTB9 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed","protein_coding" "LOC_Os12g40730","No alias","Oryza sativa","helix-loop-helix DNA-binding domain containing protein, expressed","protein_coding" "LOC_Os12g41920","No alias","Oryza sativa","single myb histone, putative, expressed","protein_coding" "MA_10433037g0010","No alias","Picea abies","(at5g14600 : 400.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: tRNA (adenine-N1-)-methyltransferase activity; INVOLVED IN: tRNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: tRNA methyltransferase complex GCD14 subunit (InterPro:IPR014816); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 800.0) & (original description: no original description)","protein_coding" "MA_10434656g0020","No alias","Picea abies","(at5g03990 : 95.1) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G51940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 190.2) & (original description: no original description)","protein_coding" "MA_10436042g0030","No alias","Picea abies","(at4g04950 : 397.0) thioredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Glutaredoxin-related protein (InterPro:IPR004480); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT4G32580.1); Has 26535 Blast hits to 17137 proteins in 2757 species: Archae - 249; Bacteria - 14010; Metazoa - 1647; Fungi - 1426; Plants - 1759; Viruses - 3; Other Eukaryotes - 7441 (source: NCBI BLink). & (reliability: 794.0) & (original description: no original description)","protein_coding" "MA_190532g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding" "MA_20129g0010","No alias","Picea abies","(at5g01110 : 261.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G05670.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q76c99|rf1_orysa : 237.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 490.0) & (original description: no original description)","protein_coding" "MA_215727g0010","No alias","Picea abies","(at5g19570 : 100.0) unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0546 (InterPro:IPR018908); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 200.0) & (original description: no original description)","protein_coding" "MA_29489g0010","No alias","Picea abies","(at1g14990 : 146.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. & (reliability: 292.0) & (original description: no original description)","protein_coding" "MA_45756g0010","No alias","Picea abies","(q02921|no93_soybn : 105.0) Early nodulin 93 (N-93) - Glycine max (Soybean) & (at5g25940 : 94.4) early nodulin-related; FUNCTIONS IN: molecular_function unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Early nodulin 93 ENOD93 protein (InterPro:IPR005050); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 188.8) & (original description: no original description)","protein_coding" "MA_482336g0010","No alias","Picea abies","(at3g48530 : 188.0) SNF1-related protein kinase regulatory subunit gamma 1 (KING1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: Cystathionine beta-synthase (CBS) protein (TAIR:AT1G69800.1); Has 3278 Blast hits to 3263 proteins in 1076 species: Archae - 152; Bacteria - 2121; Metazoa - 342; Fungi - 134; Plants - 135; Viruses - 0; Other Eukaryotes - 394 (source: NCBI BLink). & (reliability: 376.0) & (original description: no original description)","protein_coding" "MA_48867g0010","No alias","Picea abies","(at2g01390 : 402.0) Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G01360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q76c99|rf1_orysa : 119.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 804.0) & (original description: no original description)","protein_coding" "MA_492314g0010","No alias","Picea abies","(at1g80270 : 290.0) PENTATRICOPEPTIDE REPEAT 596 (PPR596); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G15480.1); Has 12069 Blast hits to 5943 proteins in 220 species: Archae - 0; Bacteria - 13; Metazoa - 132; Fungi - 119; Plants - 11568; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink). & (reliability: 580.0) & (original description: no original description)","protein_coding" "MA_60579g0010","No alias","Picea abies","(at2g22070 : 611.0) pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G25360.1); Has 47939 Blast hits to 14346 proteins in 287 species: Archae - 0; Bacteria - 20; Metazoa - 98; Fungi - 122; Plants - 46979; Viruses - 0; Other Eukaryotes - 720 (source: NCBI BLink). & (q76c99|rf1_orysa : 141.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1130.0) & (original description: no original description)","protein_coding" "MA_652831g0010","No alias","Picea abies","(at5g51020 : 189.0) Encodes CRL (CRUMPLED LEAF), a protein localized in the outer envelope membrane of plastids. Mutation in this gene affects the pattern of cell division, cell differentiation and plastid division.; CRUMPLED LEAF (CRL); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1001 (InterPro:IPR010404); Has 109 Blast hits to 109 proteins in 37 species: Archae - 0; Bacteria - 64; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 378.0) & (original description: no original description)","protein_coding" "MA_6896100g0010","No alias","Picea abies","(at5g53920 : 124.0) ribosomal protein L11 methyltransferase-related; FUNCTIONS IN: protein methyltransferase activity; INVOLVED IN: protein amino acid methylation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Ribosomal protein L11 methyltransferase (InterPro:IPR004498), Ribosomal L11 methyltransferase, PrmA (InterPro:IPR010456); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 248.0) & (original description: no original description)","protein_coding" "MA_777685g0010","No alias","Picea abies","(at3g02720 : 437.0) Class I glutamine amidotransferase-like superfamily protein; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C56, PfpI (InterPro:IPR006286), ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT2G38860.2); Has 9235 Blast hits to 5440 proteins in 1716 species: Archae - 384; Bacteria - 8047; Metazoa - 84; Fungi - 88; Plants - 239; Viruses - 0; Other Eukaryotes - 393 (source: NCBI BLink). & (reliability: 874.0) & (original description: no original description)","protein_coding" "MA_79624g0010","No alias","Picea abies","(at3g25970 : 531.0) Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 41202 Blast hits to 13044 proteins in 247 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 58; Plants - 40527; Viruses - 0; Other Eukaryotes - 488 (source: NCBI BLink). & (q76c99|rf1_orysa : 146.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1062.0) & (original description: no original description)","protein_coding" "MA_810376g0010","No alias","Picea abies","(at4g18640 : 200.0) Required for root hair elongation during tip growth.; morphogenesis of root hair 1 (MRH1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, root hair cell differentiation; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G45840.2); Has 77438 Blast hits to 37028 proteins in 1172 species: Archae - 20; Bacteria - 1270; Metazoa - 6142; Fungi - 481; Plants - 65385; Viruses - 62; Other Eukaryotes - 4078 (source: NCBI BLink). & (o24585|cri4_maize : 172.0) Putative receptor protein kinase CRINKLY4 precursor (EC 2.7.11.1) - Zea mays (Maize) & (reliability: 400.0) & (original description: no original description)","protein_coding" "MA_8274998g0010","No alias","Picea abies","(at5g49060 : 161.0) FUNCTIONS IN: protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Protein of unknown function DUF1977, DnaJ-like (InterPro:IPR015399), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (TAIR:AT3G57340.2); Has 23804 Blast hits to 23788 proteins in 3287 species: Archae - 182; Bacteria - 9342; Metazoa - 4208; Fungi - 2292; Plants - 2452; Viruses - 18; Other Eukaryotes - 5310 (source: NCBI BLink). & (reliability: 322.0) & (original description: no original description)","protein_coding" "MA_835083g0010","No alias","Picea abies","(at1g11290 : 592.0) Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.; CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (q76c99|rf1_orysa : 102.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1184.0) & (original description: no original description)","protein_coding" "MA_9350851g0010","No alias","Picea abies","(at1g10150 : 161.0) Carbohydrate-binding protein; FUNCTIONS IN: carbohydrate binding; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Carbohydrate-binding protein (TAIR:AT1G59510.1); Has 114 Blast hits to 112 proteins in 22 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 322.0) & (original description: no original description)","protein_coding" "Mp1g00110.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp1g03850.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp2g19130.1","No alias","Marchantia polymorpha","component mtRPS17 of small ribosomal subunit proteome","protein_coding" "Mp4g01230.1","No alias","Marchantia polymorpha","Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana (sp|q9sz52|pp344_arath : 388.0)","protein_coding" "Mp4g06290.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp5g03790.1","No alias","Marchantia polymorpha","deoxyuridine triphosphatase (DUT)","protein_coding" "Mp5g09030.1","No alias","Marchantia polymorpha","Efl1 LSU processome elongation-factor-like regulatory GTPase","protein_coding" "Mp5g10650.1","No alias","Marchantia polymorpha","component TRM82 of TRM8-TRM82 tRNA guanosine-methyltransferase complex","protein_coding" "Mp5g18020.1","No alias","Marchantia polymorpha","component eIF3f of eIF3 mRNA-to-PIC binding complex","protein_coding" "Mp5g24010.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp6g07810.1","No alias","Marchantia polymorpha","component TRM61 of TRM61-TRM6 tRNA adenosine-methyltransferase complex","protein_coding" "Potri.018G116500","No alias","Populus trichocarpa","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding" "Potri.018G120500","No alias","Populus trichocarpa","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding" "Pp1s154_13V6","No alias","Physcomitrella patens","F5O24.10; expressed protein [Arabidopsis thaliana]","protein_coding" "Pp1s15_54V6","No alias","Physcomitrella patens","translation initiation factor if-3","protein_coding" "Pp1s17_13V6","No alias","Physcomitrella patens","T15N1.90; expressed protein [Arabidopsis thaliana]","protein_coding" "Pp1s189_64V6","No alias","Physcomitrella patens","8-oxoguanine dna glycosylase","protein_coding" "Pp1s212_67V6","No alias","Physcomitrella patens","prefoldin subunit 3","protein_coding" "Pp1s246_54V6","No alias","Physcomitrella patens","protein cobra","protein_coding" "Pp1s342_20V6","No alias","Physcomitrella patens","at1g69830 t17f3_14","protein_coding" "Pp1s353_5V6","No alias","Physcomitrella patens","site-specific dna endonuclease","protein_coding" "Pp1s390_4V6","No alias","Physcomitrella patens","epsilon 1","protein_coding" "Pp1s403_36V6","No alias","Physcomitrella patens","calcium-binding ef hand family protein","protein_coding" "Pp1s404_26V6","No alias","Physcomitrella patens","40s ribosomal protein s12","protein_coding" "Pp1s7_54V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s83_28V6","No alias","Physcomitrella patens","uridylate kinase","protein_coding" "Pp1s90_153V6","No alias","Physcomitrella patens","F28I16.100; expressed protein [Arabidopsis thaliana]","protein_coding" "Pp1s9_154V6","No alias","Physcomitrella patens","K21H1.28; expressed protein [Arabidopsis thaliana]","protein_coding" "PSME_00000631-RA","No alias","Pseudotsuga menziesii","(at5g14600 : 399.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: tRNA (adenine-N1-)-methyltransferase activity; INVOLVED IN: tRNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: tRNA methyltransferase complex GCD14 subunit (InterPro:IPR014816); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 798.0) & (original description: no original description)","protein_coding" "PSME_00002026-RA","No alias","Pseudotsuga menziesii","(at1g17690 : 652.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Digestive organ expansion factor, predicted (InterPro:IPR010678); Has 25006 Blast hits to 13379 proteins in 904 species: Archae - 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants - 1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI BLink). & (reliability: 1304.0) & (original description: no original description)","protein_coding" "PSME_00003464-RA","No alias","Pseudotsuga menziesii","(at1g08260 : 1385.0) Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.; TILTED 1 (TIL1); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: positive regulation of S phase of mitotic cell cycle, negative regulation of long-day photoperiodism, flowering, embryo development ending in seed dormancy; LOCATED IN: apoplast, epsilon DNA polymerase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), Domain of unknown function DUF1744 (InterPro:IPR013697), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134); BEST Arabidopsis thaliana protein match is: DNA polymerase epsilon catalytic subunit (TAIR:AT2G27120.1); Has 2011 Blast hits to 1700 proteins in 652 species: Archae - 331; Bacteria - 603; Metazoa - 305; Fungi - 291; Plants - 83; Viruses - 58; Other Eukaryotes - 340 (source: NCBI BLink). & (reliability: 2770.0) & (original description: no original description)","protein_coding" "PSME_00007478-RA","No alias","Pseudotsuga menziesii","(p19684|roc5_nicsy : 156.0) 33 kDa ribonucleoprotein, chloroplast precursor - Nicotiana sylvestris (Wood tobacco) & (at3g52380 : 149.0) chloroplast RNA-binding protein; chloroplast RNA-binding protein 33 (CP33); FUNCTIONS IN: RNA binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: chloroplast RNA-binding protein 31B (TAIR:AT5G50250.1); Has 514069 Blast hits to 499112 proteins in 22048 species: Archae - 10752; Bacteria - 302541; Metazoa - 101965; Fungi - 16255; Plants - 33338; Viruses - 35348; Other Eukaryotes - 13870 (source: NCBI BLink). & (reliability: 298.0) & (original description: no original description)","protein_coding" "PSME_00007637-RA","No alias","Pseudotsuga menziesii","(at1g08230 : 476.0) Transmembrane amino acid transporter family protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT5G41800.1); Has 2686 Blast hits to 2681 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 558; Fungi - 296; Plants - 1464; Viruses - 0; Other Eukaryotes - 368 (source: NCBI BLink). & (reliability: 952.0) & (original description: no original description)","protein_coding" "PSME_00009634-RA","No alias","Pseudotsuga menziesii","(at4g30900 : 187.0) DNAse I-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 374.0) & (original description: no original description)","protein_coding" "PSME_00011872-RA","No alias","Pseudotsuga menziesii","(at1g74960 : 679.0) Encodes a plastidic beta-ketoacyl-ACP synthase II, involved in fatty acid elongation from 16:0-ACP to 18:0-ACP. Homozygous knock-out mutants are embryo lethal, indicating early embryo development is sensitive to elevated 16:0.; fatty acid biosynthesis 1 (FAB1); CONTAINS InterPro DOMAIN/s: Beta-ketoacyl synthase (InterPro:IPR000794), Thiolase-like (InterPro:IPR016039), Beta-ketoacyl synthase, C-terminal (InterPro:IPR014031), 3-oxoacyl-[acyl-carrier-protein] synthase 2 (InterPro:IPR017568), Beta-ketoacyl synthase, N-terminal (InterPro:IPR014030), Thiolase-like, subgroup (InterPro:IPR016038), Beta-ketoacyl synthase, active site (InterPro:IPR018201); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-acyl carrier protein synthase I (TAIR:AT5G46290.1). & (p23902|kasc1_horvu : 433.0) 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplast precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase I) (KAS I) - Hordeum vulgare (Barley) & (reliability: 1358.0) & (original description: no original description)","protein_coding" "PSME_00012031-RA","No alias","Pseudotsuga menziesii","(at3g22470 : 323.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 71386 Blast hits to 15586 proteins in 313 species: Archae - 4; Bacteria - 76; Metazoa - 1075; Fungi - 1368; Plants - 66381; Viruses - 0; Other Eukaryotes - 2482 (source: NCBI BLink). & (q76c99|rf1_orysa : 280.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 628.0) & (original description: no original description)","protein_coding" "PSME_00013938-RA","No alias","Pseudotsuga menziesii","(at5g51970 : 253.0) Encodes a putative sorbitol dehydrogenase that can be thiolated in vitro.; GroES-like zinc-binding alcohol dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding alcohol dehydrogenase family protein (TAIR:AT5G63620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 506.0) & (original description: no original description)","protein_coding" "PSME_00013982-RA","No alias","Pseudotsuga menziesii","(at1g66920 : 215.0) Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G66910.1). & (q8l4h4|nork_medtr : 121.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 404.0) & (original description: no original description)","protein_coding" "PSME_00020046-RA","No alias","Pseudotsuga menziesii","(at1g61180 : 156.0) LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT1G61310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 300.0) & (original description: no original description)","protein_coding" "PSME_00020567-RA","No alias","Pseudotsuga menziesii","(at1g54570 : 246.0) Esterase/lipase/thioesterase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol acyltransferase (InterPro:IPR007130); BEST Arabidopsis thaliana protein match is: Esterase/lipase/thioesterase family protein (TAIR:AT5G41130.1); Has 651 Blast hits to 637 proteins in 188 species: Archae - 0; Bacteria - 283; Metazoa - 139; Fungi - 19; Plants - 149; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink). & (reliability: 492.0) & (original description: no original description)","protein_coding" "PSME_00021178-RA","No alias","Pseudotsuga menziesii","(at4g02050 : 94.7) sugar transporter protein 7 (STP7); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G26340.1); Has 26348 Blast hits to 25870 proteins in 1897 species: Archae - 376; Bacteria - 11847; Metazoa - 3711; Fungi - 6732; Plants - 2516; Viruses - 0; Other Eukaryotes - 1166 (source: NCBI BLink). & (q10710|sta_ricco : 91.3) Sugar carrier protein A - Ricinus communis (Castor bean) & (reliability: 189.4) & (original description: no original description)","protein_coding" "PSME_00022576-RA","No alias","Pseudotsuga menziesii","(at5g55120 : 286.0) Encodes a GDP-L-galactose phosphorylase, with similar biochemical properties as VTC2.; VITAMIN C DEFECTIVE 5 (VTC5); BEST Arabidopsis thaliana protein match is: mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase (GDP)s;galactose-1-phosphate guanylyltransferase (GDP)s;GDP-D-glucose phosphorylases;quercetin 4'-O-glucosyltransferases (TAIR:AT4G26850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 572.0) & (original description: no original description)","protein_coding" "PSME_00023000-RA","No alias","Pseudotsuga menziesii","(at2g18220 : 283.0) Noc2p family; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0120 (InterPro:IPR005343); BEST Arabidopsis thaliana protein match is: Noc2p family (TAIR:AT3G55510.1); Has 4709 Blast hits to 3397 proteins in 331 species: Archae - 4; Bacteria - 179; Metazoa - 1693; Fungi - 681; Plants - 249; Viruses - 70; Other Eukaryotes - 1833 (source: NCBI BLink). & (q8lnu5|noc2l_orysa : 251.0) Nucleolar complex protein 2 homolog (Protein NOC2 homolog) - Oryza sativa (Rice) & (reliability: 566.0) & (original description: no original description)","protein_coding" "PSME_00029215-RA","No alias","Pseudotsuga menziesii","(at3g02450 : 321.0) cell division protein ftsH, putative; FUNCTIONS IN: in 6 functions; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 43920 Blast hits to 41347 proteins in 3350 species: Archae - 1585; Bacteria - 19560; Metazoa - 4991; Fungi - 3838; Plants - 3354; Viruses - 31; Other Eukaryotes - 10561 (source: NCBI BLink). & (q5z974|ftsh_orysa : 228.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 642.0) & (original description: no original description)","protein_coding" "PSME_00030252-RA","No alias","Pseudotsuga menziesii","(at4g16210 : 292.0) enoyl-CoA hydratase/isomerase A (ECHIA); FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: enoyl-CoA hydratase/isomerase D (TAIR:AT1G60550.1); Has 36619 Blast hits to 36609 proteins in 2298 species: Archae - 475; Bacteria - 23840; Metazoa - 1646; Fungi - 934; Plants - 612; Viruses - 0; Other Eukaryotes - 9112 (source: NCBI BLink). & (q39659|mfpa_cucsa : 98.2) Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Includes: Enoyl-CoA hydratase (EC 4.2.1.17); 3-2-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3); 3-hydroxyacyl-CoA dehydrogenase ( & (reliability: 584.0) & (original description: no original description)","protein_coding" "PSME_00031929-RA","No alias","Pseudotsuga menziesii","(at1g25220 : 259.0) Catalyzes the first step of tryptophan biosynthesis: Chorismate L-Glutamine = Anthranilate Pyruvate L-Glutamate. Functions as a heterocomplex with anthranilate synthase alpha subunit (ASA1 or ASA2).; anthranilate synthase beta subunit 1 (ASB1); FUNCTIONS IN: anthranilate synthase activity; INVOLVED IN: tryptophan biosynthetic process, response to ethylene stimulus, response to bacterium, auxin biosynthetic process, lateral root primordium development; LOCATED IN: chloroplast; EXPRESSED IN: pericycle, cotyledon vascular system, primary root tip, lateral root primordium; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase superfamily (InterPro:IPR011702), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Anthranilate synthase, glutamine amidotransferase domain (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase domain (InterPro:IPR001317), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: Glutamine amidotransferase type 1 family protein (TAIR:AT5G57890.1). & (reliability: 518.0) & (original description: no original description)","protein_coding" "PSME_00032993-RA","No alias","Pseudotsuga menziesii","(at4g30610 : 480.0) Encodes a secreted glycosylated serine carboxypeptidase with broad substrate preference that is involved in brassinosteroid signalling via BRI1. It is proteolytically processed in vivo by a separate as yet unidentified protease.; BRI1 SUPPRESSOR 1 (BRS1); CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 22 (TAIR:AT2G24000.1); Has 3492 Blast hits to 3440 proteins in 297 species: Archae - 0; Bacteria - 59; Metazoa - 632; Fungi - 854; Plants - 1543; Viruses - 0; Other Eukaryotes - 404 (source: NCBI BLink). & (p52711|cbp23_horvu : 454.0) Serine carboxypeptidase II-3 precursor (EC 3.4.16.6) (CP-MII.3) [Contains: Serine carboxypeptidase II-3 chain A; Serine carboxypeptidase II-3 chain B] - Hordeum vulgare (Barley) & (reliability: 960.0) & (original description: no original description)","protein_coding" "PSME_00035113-RA","No alias","Pseudotsuga menziesii","(at4g36960 : 174.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G07810.1); Has 349914 Blast hits to 333627 proteins in 17318 species: Archae - 7092; Bacteria - 199106; Metazoa - 73875; Fungi - 10838; Plants - 25006; Viruses - 24105; Other Eukaryotes - 9892 (source: NCBI BLink). & (reliability: 348.0) & (original description: no original description)","protein_coding" "PSME_00035623-RA","No alias","Pseudotsuga menziesii","(at2g26210 : 172.0) Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110). & (reliability: 344.0) & (original description: no original description)","protein_coding" "PSME_00037098-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00038068-RA","No alias","Pseudotsuga menziesii","(at1g56120 : 622.0) Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G56130.1); Has 185204 Blast hits to 134213 proteins in 4803 species: Archae - 129; Bacteria - 16314; Metazoa - 50838; Fungi - 10579; Plants - 84868; Viruses - 447; Other Eukaryotes - 22029 (source: NCBI BLink). & (q8l4h4|nork_medtr : 232.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 1244.0) & (original description: no original description)","protein_coding" "PSME_00038942-RA","No alias","Pseudotsuga menziesii","(at1g66910 : 308.0) Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G66930.1); Has 113951 Blast hits to 112305 proteins in 4393 species: Archae - 178; Bacteria - 12361; Metazoa - 42729; Fungi - 9627; Plants - 32494; Viruses - 324; Other Eukaryotes - 16238 (source: NCBI BLink). & (p17801|kpro_maize : 181.0) Putative receptor protein kinase ZmPK1 precursor (EC 2.7.11.1) - Zea mays (Maize) & (reliability: 586.0) & (original description: no original description)","protein_coding" "PSME_00041720-RA","No alias","Pseudotsuga menziesii","(at1g28560 : 261.0) Encodes a protein similar to human SNAP50. Mutants display different temperature sensitivities in the dedifferentiation of cells from different organs. Mutation inhibits the dedifferentiation-associated accumulation of U-snRNAs and some other small RNA species encoded by independent-type genes carrying the USE and TATA box. Required for the elevation of cell proliferation competence in hypocotyl dedifferentiation.; SHOOT REDIFFERENTIATION DEFECTIVE 2 (SRD2); FUNCTIONS IN: DNA binding; INVOLVED IN: snRNA transcription, organ morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: snRNA-activating protein complex, subunit 3, C-terminal (InterPro:IPR022042); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 522.0) & (original description: no original description)","protein_coding" "PSME_00041763-RA","No alias","Pseudotsuga menziesii","(at4g26850 : 152.0) Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light.; vitamin c defective 2 (VTC2); FUNCTIONS IN: in 8 functions; INVOLVED IN: response to jasmonic acid stimulus, L-ascorbic acid biosynthetic process, defense response to bacterium, response to heat, defense response by callose deposition in cell wall; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: galactose-1-phosphate guanylyltransferase (GDP)s;GDP-D-glucose phosphorylases;quercetin 4'-O-glucosyltransferases (TAIR:AT5G55120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 304.0) & (original description: no original description)","protein_coding" "PSME_00041868-RA","No alias","Pseudotsuga menziesii","(at3g55770 : 310.0) GATA type zinc finger transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G39900.1). & (p29675|sf3_helan : 219.0) Pollen-specific protein SF3 - Helianthus annuus (Common sunflower) & (reliability: 620.0) & (original description: no original description)","protein_coding" "PSME_00041966-RA","No alias","Pseudotsuga menziesii","(at1g72040 : 377.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: phosphotransferase activity, alcohol group as acceptor, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Deoxynucleoside kinase (InterPro:IPR002624); Has 2859 Blast hits to 2855 proteins in 704 species: Archae - 0; Bacteria - 1629; Metazoa - 493; Fungi - 0; Plants - 69; Viruses - 71; Other Eukaryotes - 597 (source: NCBI BLink). & (reliability: 754.0) & (original description: no original description)","protein_coding" "PSME_00043176-RA","No alias","Pseudotsuga menziesii","(at1g22400 : 251.0) UGT85A1; FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 85A3 (TAIR:AT1G22380.1); Has 7940 Blast hits to 7832 proteins in 421 species: Archae - 0; Bacteria - 227; Metazoa - 2330; Fungi - 36; Plants - 5216; Viruses - 60; Other Eukaryotes - 71 (source: NCBI BLink). & (q41819|iaag_maize : 161.0) Indole-3-acetate beta-glucosyltransferase (EC 2.4.1.121) (IAA-Glu synthetase) ((Uridine 5'-diphosphate-glucose:indol-3-ylacetyl)-beta-D-glucosyl transferase) - Zea mays (Maize) & (reliability: 502.0) & (original description: no original description)","protein_coding" "PSME_00044563-RA","No alias","Pseudotsuga menziesii","(at4g33300 : 458.0) ADR1-like 1 (ADR1-L1); FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Powdery mildew resistance protein, RPW8 domain (InterPro:IPR008808), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: ADR1-like 2 (TAIR:AT5G04720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 916.0) & (original description: no original description)","protein_coding" "PSME_00045493-RA","No alias","Pseudotsuga menziesii","(at5g19680 : 331.0) Leucine-rich repeat (LRR) family protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G22320.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 662.0) & (original description: no original description)","protein_coding" "PSME_00048401-RA","No alias","Pseudotsuga menziesii","(at1g60420 : 94.0) Reduce transmission through pollen.; DC1 domain-containing protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: response to cadmium ion, pollen tube growth, pollen tube guidance; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), C1-like (InterPro:IPR011424), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: protein kinase C-like zinc finger protein (TAIR:AT4G31240.2); Has 6688 Blast hits to 3903 proteins in 794 species: Archae - 4; Bacteria - 4185; Metazoa - 634; Fungi - 4; Plants - 553; Viruses - 0; Other Eukaryotes - 1308 (source: NCBI BLink). & (reliability: 188.0) & (original description: no original description)","protein_coding" "PSME_00051647-RA","No alias","Pseudotsuga menziesii","(at2g32380 : 128.0) Transmembrane protein 97, predicted; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 97, predicted (InterPro:IPR016964); BEST Arabidopsis thaliana protein match is: Transmembrane protein 97, predicted (TAIR:AT1G05210.1); Has 585 Blast hits to 585 proteins in 19 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 558; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). & (reliability: 256.0) & (original description: no original description)","protein_coding" "Seita.1G181600.1","No alias","Setaria italica ","component *(RRP45) of exosome EXO9 core complex","protein_coding" "Seita.1G235700.1","No alias","Setaria italica ","phosphorolytic exoribonuclease *(PNP) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Seita.1G236100.1","No alias","Setaria italica ","circadian clock evening oscillator component *(TOC1) of circadian clock","protein_coding" "Seita.1G244100.1","No alias","Setaria italica ","component *(mL103) of large mitoribosomal-subunit proteome","protein_coding" "Seita.1G290000.1","No alias","Setaria italica ","regulatory protein *(SBA) of mitochondrial nucleoid organization","protein_coding" "Seita.1G305100.1","No alias","Setaria italica ","core component *(NHP2) of H/ACA snoRNP RNA pseudouridylation complex","protein_coding" "Seita.1G324900.1","No alias","Setaria italica ","receptor component *(OM64) of outer mitochondrion membrane TOM translocation system","protein_coding" "Seita.1G353200.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.1G374000.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G077000.1","No alias","Setaria italica ","SSU processome assembly factor *(RRP5)","protein_coding" "Seita.2G083900.1","No alias","Setaria italica ","RNA editing factor *(POCO)","protein_coding" "Seita.2G114800.1","No alias","Setaria italica ","component *(NRPA3) of RNA polymerase I complex & component *(NRPC3) of RNA polymerase III complex","protein_coding" "Seita.2G129300.1","No alias","Setaria italica ","subunit alpha of Cpn60 chaperonin complex & subunit alpha of CPN60 assembly chaperone heterodimer & chaperone *(Hsp60)","protein_coding" "Seita.2G142600.1","No alias","Setaria italica ","ribosomal protein arginine N-methyltransferase *(PRMT3)","protein_coding" "Seita.2G218100.1","No alias","Setaria italica ","chaperone HSCA of mitochondrial ISC system transfer phase & chaperone *(mtHsc70)) & chaperone component *(mtHSP70) of inner mitochondrion membrane TIM translocation system","protein_coding" "Seita.2G247200.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G293000.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G302700.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G317500.1","No alias","Setaria italica ","mtDNA-binding regulatory protein *(mTERF18) of mitochondrial nucleoid organization & mTERF-type transcription factor","protein_coding" "Seita.2G345800.1","No alias","Setaria italica ","plastidial RNA splicing factor *(THA8)","protein_coding" "Seita.2G368300.1","No alias","Setaria italica ","helicase component *(RVB) & helicase component *(RVB) of chromatin remodeling complex","protein_coding" "Seita.2G381300.1","No alias","Setaria italica ","RNA editing factor *(ORRM3)","protein_coding" "Seita.3G023600.1","No alias","Setaria italica ","FSD2-interacting component of plastid-encoded RNA polymerase","protein_coding" "Seita.3G059800.1","No alias","Setaria italica ","splicing factor *(CFM9)","protein_coding" "Seita.3G132000.1","No alias","Setaria italica ","tRNA cytidine acetyltransferase","protein_coding" "Seita.3G150300.1","No alias","Setaria italica ","component *(bL21m) of large mitoribosomal-subunit proteome","protein_coding" "Seita.4G031000.1","No alias","Setaria italica ","type-I arginine N-methyltransferase *(PRMT10)","protein_coding" "Seita.4G122000.1","No alias","Setaria italica ","core component *(NHP2) of H/ACA snoRNP RNA pseudouridylation complex","protein_coding" "Seita.4G153900.1","No alias","Setaria italica ","phosphomannomutase","protein_coding" "Seita.4G257300.1","No alias","Setaria italica ","component *(POP1) of RNA-dependent RNase P complex","protein_coding" "Seita.5G042800.1","No alias","Setaria italica ","channel-forming component *(Tom40) of outer mitochondrion membrane TOM translocation system","protein_coding" "Seita.5G099100.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.5G210300.1","No alias","Setaria italica ","hydroxycinnamaldehyde dehydrogenase & EC_1.2 oxidoreductase acting on aldehyde or oxo group of donor","protein_coding" "Seita.5G333700.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.5G345900.1","No alias","Setaria italica ","component *(mS76) of small mitoribosomal-subunit proteome & component *(mS78/mS79) of small mitoribosomal-subunit proteome","protein_coding" "Seita.5G360400.1","No alias","Setaria italica ","STAR-type post-transcriptionally regulatory factor","protein_coding" "Seita.5G427300.1","No alias","Setaria italica ","RNA editing factor *(ORRM3)","protein_coding" "Seita.5G451200.1","No alias","Setaria italica ","cofactor of plastid-encoded RNA polymerase *(TAC9) & ssDNA-binding protein *(OSB)","protein_coding" "Seita.5G468700.1","No alias","Setaria italica ","telomeric dsDNA-binding protein","protein_coding" "Seita.6G045100.1","No alias","Setaria italica ","DNA polymerase *(POP)","protein_coding" "Seita.6G097000.1","No alias","Setaria italica ","aspartate transcarbamoylase *(ATC)","protein_coding" "Seita.6G099900.1","No alias","Setaria italica ","scaffold nucleoporin of nuclear pore complex *(NUP43)","protein_coding" "Seita.6G125900.1","No alias","Setaria italica ","NSUN-group-IV rRNA methyltransferase","protein_coding" "Seita.7G050100.1","No alias","Setaria italica ","component *(TRM61) of TRM61-TRM6 tRNA adenosine-methyltransferase complex & EC_2.1 transferase transferring one-carbon group","protein_coding" "Seita.7G057000.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.7G144000.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.7G144900.1","No alias","Setaria italica ","component *(NRPC5) of RNA polymerase III complex & component *(NRPD5) of RNA polymerase IV complex & component *(NRPA5) of RNA polymerase I complex & component *(NRPB5) of RNA polymerase II complex","protein_coding" "Seita.7G149700.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.7G172600.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.7G225200.1","No alias","Setaria italica ","RNA editing factor *(MORF)","protein_coding" "Seita.8G109500.1","No alias","Setaria italica ","component *(RRP43) of exosome EXO9 core complex","protein_coding" "Seita.9G037900.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G110500.1","No alias","Setaria italica ","component *(WDR5/SWD3) of COMPASS histone trimethylation complex","protein_coding" "Seita.9G121200.1","No alias","Setaria italica ","RNA editing factor *(OZ)","protein_coding" "Seita.9G140100.1","No alias","Setaria italica ","hydroxymethylpyrimidine phosphate synthase *(ThiC)","protein_coding" "Seita.9G162700.1","No alias","Setaria italica ","ssDNA-binding protein *(OSB)","protein_coding" "Seita.9G168300.1","No alias","Setaria italica ","P2B-type calcium cation-transporting ATPase *(ACA)","protein_coding" "Seita.9G175000.1","No alias","Setaria italica ","EC_3.4 hydrolase acting on peptide bond (peptidase) & L-asparaginase *(ASPG)","protein_coding" "Seita.9G233700.1","No alias","Setaria italica ","LSU ribosomal large subunit export factor *(MDN1)","protein_coding" "Seita.9G239000.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G404700.1","No alias","Setaria italica ","scaffold component *(Nop58) of snoRNP rRNA methylation complex","protein_coding" "Seita.9G426200.1","No alias","Setaria italica ","adenylosuccinate lyase *(PUR8)","protein_coding" "Seita.9G445800.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G449000.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G492200.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G528100.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G539000.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G570700.1","No alias","Setaria italica ","component *(TRM734) of TRM7-TRM732/TRM734 tRNA cytidine/guanosine-methyltransferase complex","protein_coding" "Sobic.001G053000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G261200.1","No alias","Sorghum bicolor ","nicotinate transporter *(NiaP)","protein_coding" "Sobic.001G375700.1","No alias","Sorghum bicolor ","RNA splicing factor *(SR30/34)","protein_coding" "Sobic.001G460100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G148900.2","No alias","Sorghum bicolor ","EC_3.2 glycosylase","protein_coding" "Sobic.002G160400.1","No alias","Sorghum bicolor ","EC_2.7 transferase transferring phosphorus-containing group & small subunit *(APS) of ADP-glucose pyrophosphorylase","protein_coding" "Sobic.002G333800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.003G004800.1","No alias","Sorghum bicolor ","component *(DMS3) of DNA methylation accessory complex","protein_coding" "Sobic.003G311500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.006G032900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.006G186800.1","No alias","Sorghum bicolor ","polyprenol reductase *(PPRD) & EC_1.3 oxidoreductase acting on CH-CH group of donor","protein_coding" "Sobic.006G258300.3","No alias","Sorghum bicolor ","cysteine oxidase *(PCO)","protein_coding" "Sobic.007G128500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.007G225600.1","No alias","Sorghum bicolor ","Trihelix-type transcription factor","protein_coding" "Sobic.008G185500.2","No alias","Sorghum bicolor ","plant-specific E3 ubiquitin ligase *(RSL/RFA)","protein_coding" "Sobic.009G004400.1","No alias","Sorghum bicolor ","component *(TRM61) of TRM61-TRM6 tRNA adenosine-methyltransferase complex & EC_2.1 transferase transferring one-carbon group","protein_coding" "Sobic.009G142800.3","No alias","Sorghum bicolor ","amino acid transporter *(AAP)","protein_coding" "Sobic.010G133400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.010G134400.1","No alias","Sorghum bicolor ","acyl-CoA","protein_coding" "Sobic.010G236900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.010G254900.1","No alias","Sorghum bicolor ","nucleoporin of nuclear pore complex *(CG1)","protein_coding" "Sobic.010G262100.4","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Solyc01g012750","No alias","Solanum lycopersicum","Aldehyde dehydrogenase (AHRD V3.3 *-* K4ATY6_SOLLC)","protein_coding" "Solyc01g014340","No alias","Solanum lycopersicum","No description available","protein_coding" "Solyc01g014870","No alias","Solanum lycopersicum","No description available","protein_coding" "Solyc01g090980","No alias","Solanum lycopersicum","LOW QUALITY:cyclic nucleotide-gated channel 6 (AHRD V3.3 --* AT2G23980.9)","protein_coding" "Solyc01g094320","No alias","Solanum lycopersicum","Pollen-specific protein SF3, putative (AHRD V3.3 *** B9RDN9_RICCO)","protein_coding" "Solyc02g030350","No alias","Solanum lycopersicum","LOW QUALITY:Protein Ycf2 (AHRD V3.3 --* YCF2_SILLA)","protein_coding" "Solyc02g036390","No alias","Solanum lycopersicum","LOW QUALITY:Regulator of chromosome condensation (RCC1) family protein (AHRD V3.3 *** B9MWW8_POPTR)","protein_coding" "Solyc02g061970","No alias","Solanum lycopersicum","LOW QUALITY:GTP-binding protein Obg/CgtA (AHRD V3.3 --* AT1G07620.4)","protein_coding" "Solyc02g062850","No alias","Solanum lycopersicum","Polyol/monosaccharide transporter 5 (AHRD V3.3 *-* A0A060PLC4_SOLLC)","protein_coding" "Solyc02g064930","No alias","Solanum lycopersicum","LOW QUALITY:MAP kinase kinase kinase 13","protein_coding" "Solyc02g070270","No alias","Solanum lycopersicum","Cationic amino acid transporter, putative (AHRD V3.3 *** B9SAY1_RICCO)","protein_coding" "Solyc02g081780","No alias","Solanum lycopersicum","B3 domain-containing protein (AHRD V3.3 *** A0A0B2PYF9_GLYSO)","protein_coding" "Solyc03g007020","No alias","Solanum lycopersicum","LOW QUALITY:MADS-box transcription factor family protein (AHRD V3.3 *** G7JZ38_MEDTR)","protein_coding" "Solyc03g031770","No alias","Solanum lycopersicum","ROP-interactive CRIB motif protein (AHRD V3.3 *-* A0A072U2K9_MEDTR)","protein_coding" "Solyc03g034330","No alias","Solanum lycopersicum","Lipid transfer protein (AHRD V3.3 *** S4TID2_GOSHI)","protein_coding" "Solyc03g052970","No alias","Solanum lycopersicum","LOW QUALITY:Maturase K (AHRD V3.3 --* M4WAG0_9POAL)","protein_coding" "Solyc03g095830","No alias","Solanum lycopersicum","Disease resistance protein (TIR-NBS-LRR class) family (AHRD V3.3 --* AT4G16950.6)","protein_coding" "Solyc03g096140","No alias","Solanum lycopersicum","Protein yippee-like (AHRD V3.3 *** K4BJ36_SOLLC)","protein_coding" "Solyc04g005740","No alias","Solanum lycopersicum","LOW QUALITY:RING/U-box superfamily protein (AHRD V3.3 *-* AT3G19950.3)","protein_coding" "Solyc04g005760","No alias","Solanum lycopersicum","LOW QUALITY:RING/U-box superfamily protein (AHRD V3.3 *-* AT3G19950.3)","protein_coding" "Solyc04g014840","No alias","Solanum lycopersicum","Stress associated endoplasmic reticulum protein (AHRD V3.3 *** A0A0A0KD83_CUCSA)","protein_coding" "Solyc04g050360","No alias","Solanum lycopersicum","60S ribosomal protein L12 (AHRD V3.3 *-* W9R6G5_9ROSA)","protein_coding" "Solyc04g058040","No alias","Solanum lycopersicum","Laccase (AHRD V3.3 *** K4DG13_SOLLC)","protein_coding" "Solyc04g071240","No alias","Solanum lycopersicum","No description available","protein_coding" "Solyc04g077910","No alias","Solanum lycopersicum","LOW QUALITY:D5-type cyclin (AHRD V3.3 *** A8Y917_POPTR)","protein_coding" "Solyc05g008650","No alias","Solanum lycopersicum","LOW QUALITY:Disease resistance protein, putative (AHRD V3.3 *-* Q6L432_SOLDE)","protein_coding" "Solyc05g010550","No alias","Solanum lycopersicum","LOW QUALITY:1-acyl-sn-glycerol-3-phosphate acyltransferase 2 (AHRD V3.3 --* LPAT2_ARATH)","protein_coding" "Solyc05g053050","No alias","Solanum lycopersicum","LOW QUALITY:cyclin-dependent kinase inhibitor (AHRD V3.3 *** AT5G02220.1)","protein_coding" "Solyc06g009870","No alias","Solanum lycopersicum","SKP1-like protein (AHRD V3.3 *** C3V9V9_CITMA)","protein_coding" "Solyc06g009880","No alias","Solanum lycopersicum","SKP1-like protein (AHRD V3.3 *** C3V9V9_CITMA)","protein_coding" "Solyc06g043250","No alias","Solanum lycopersicum","protein kinase family protein (AHRD V3.3 *** AT5G26150.2)","protein_coding" "Solyc06g053690","No alias","Solanum lycopersicum","LOW QUALITY:tRNA (Adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A (AHRD V3.3 *** A0A0B0N2D0_GOSAR)","protein_coding" "Solyc06g063080","No alias","Solanum lycopersicum","LOW QUALITY:RING/U-box superfamily protein (AHRD V3.3 *-* AT3G14250.1)","protein_coding" "Solyc06g064760","No alias","Solanum lycopersicum","NBS-LRR resistance protein-like protein (AHRD V3.3 *** A1Y9R1_SOLLC)","protein_coding" "Solyc06g064980","No alias","Solanum lycopersicum","Lipase, GDSL (AHRD V3.3 *** A0A124SDS7_CYNCS)","protein_coding" "Solyc06g065420","No alias","Solanum lycopersicum","Cytochrome P450 (AHRD V3.3 *** A0A103XLH6_CYNCS)","protein_coding" "Solyc06g069110","No alias","Solanum lycopersicum","Lipid transfer protein (AHRD V3.3 *** A0A072UZK3_MEDTR)","protein_coding" "Solyc06g071940","No alias","Solanum lycopersicum","LOW QUALITY:Helicase protein with RING/U-box domain-containing protein (AHRD V3.3 --* AT1G05120.2)","protein_coding" "Solyc06g074660","No alias","Solanum lycopersicum","No description available","protein_coding" "Solyc06g082340","No alias","Solanum lycopersicum","F-box family protein (AHRD V3.3 *** AT3G06240.1)","protein_coding" "Solyc07g007100","No alias","Solanum lycopersicum","LOW QUALITY:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein isoform 1 (AHRD V3.3 *-* A0A061GPI9_THECC)","protein_coding" "Solyc07g041420","No alias","Solanum lycopersicum","No description available","protein_coding" "Solyc07g041650","No alias","Solanum lycopersicum","Pectin lyase-like superfamily protein (AHRD V3.3 *** AT1G17150.1)","protein_coding" "Solyc08g005110","No alias","Solanum lycopersicum","RING/U-box superfamily protein (AHRD V3.3 *** AT4G17920.1)","protein_coding" "Solyc08g015810","No alias","Solanum lycopersicum","LOW QUALITY:GDA1/CD39 nucleoside phosphatase family protein (AHRD V3.3 --* AT1G14240.4)","protein_coding" "Solyc08g023600","No alias","Solanum lycopersicum","marneral synthase (AHRD V3.3 --* AT5G42600.1)","protein_coding" "Solyc08g061410","No alias","Solanum lycopersicum","LOW QUALITY:Chromatin remodeling 31, putative (AHRD V3.3 *-* A0A061FRH7_THECC)","protein_coding" "Solyc08g062990","No alias","Solanum lycopersicum","Protein kinase superfamily protein (AHRD V3.3 *-* AT3G56760.1)","protein_coding" "Solyc08g078710","No alias","Solanum lycopersicum","Heat-shock protein, putative (AHRD V3.3 *-* B9R9S7_RICCO)","protein_coding" "Solyc09g005820","No alias","Solanum lycopersicum","Bifunctional abietadiene synthase, chloroplastic (AHRD V3.3 --* LAS_ABIBA)","protein_coding" "Solyc09g037050","No alias","Solanum lycopersicum","Sister-chromatide cohesion protein 3 (AHRD V3.3 *-* D7LHE4_ARALL)","protein_coding" "Solyc09g060150","No alias","Solanum lycopersicum","Homeobox leucine zipper protein (AHRD V3.3 *-* A0A072UAM9_MEDTR)","protein_coding" "Solyc09g091630","No alias","Solanum lycopersicum","C2 domain-containing protein / GRAM domain-containing protein (AHRD V3.3 --* AT3G59660.2)","protein_coding" "Solyc10g019210","No alias","Solanum lycopersicum","Sulfotransferase (AHRD V3.3 *** K4CZ39_SOLLC)","protein_coding" "Solyc10g024510","No alias","Solanum lycopersicum","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (AHRD V3.3 *** AT3G13610.1)","protein_coding" "Solyc10g050120","No alias","Solanum lycopersicum","No description available","protein_coding" "Solyc10g054120","No alias","Solanum lycopersicum","LOW QUALITY:cellulose synthase, putative (DUF1644) (AHRD V3.3 --* AT3G24740.6)","protein_coding" "Solyc10g055080","No alias","Solanum lycopersicum","CC-NBS-LRR disease resistance protein (AHRD V3.3 *-* V5UP80_CICAR)","protein_coding" "Solyc10g081890","No alias","Solanum lycopersicum","aluminum activated malate transporter family protein (AHRD V3.3 *** AT3G11680.2)","protein_coding" "Solyc10g083420","No alias","Solanum lycopersicum","Inosine-uridine preferring nucleoside hydrolase, putative (AHRD V3.3 *** B9SRU5_RICCO)","protein_coding" "Solyc11g008240","No alias","Solanum lycopersicum","SLF-interacting SKP1-like protein 3 (AHRD V3.3 *** K4D584_SOLLC)","protein_coding" "Solyc11g044860","No alias","Solanum lycopersicum","ENTH/ANTH/VHS superfamily protein (AHRD V3.3 *** AT1G03050.1)","protein_coding" "Solyc11g066640","No alias","Solanum lycopersicum","Hydroxycinnamoyl CoA quinate transferase 2 (AHRD V3.3 *** D8L7F0_CYNCS)","protein_coding" "Solyc11g066700","No alias","Solanum lycopersicum","GDSL esterase/lipase family protein","protein_coding" "Solyc11g069750","No alias","Solanum lycopersicum","High-affinity nitrate transporter (AHRD V3.3 *** Q76IJ7_PRUPE)","protein_coding" "Solyc12g017250","No alias","Solanum lycopersicum","Photosystem II 10 kDa polypeptide family protein (AHRD V3.3 *** A9PH94_POPTR)","protein_coding" "Solyc12g035390","No alias","Solanum lycopersicum","No description available","protein_coding" "Solyc12g038320","No alias","Solanum lycopersicum","No description available","protein_coding" "Solyc12g038830","No alias","Solanum lycopersicum","No description available","protein_coding" "Solyc12g044440","No alias","Solanum lycopersicum","Zinc finger protein (AHRD V3.3 --* W9S0M6_9ROSA)","protein_coding" "Solyc12g062390","No alias","Solanum lycopersicum","No description available","protein_coding" "Solyc12g099130","No alias","Solanum lycopersicum","R2R3MYB transcription factor 108","protein_coding" "Sopen02g031390","No alias","Solanum pennellii","tRNA methyltransferase complex GCD14 subunit","protein_coding" "Sopen06g018800","No alias","Solanum pennellii","tRNA methyltransferase complex GCD14 subunit","protein_coding"