"sequence_id","alias","species","description","type"
"evm.model.contig_128.1","No alias","Porphyridium purpureum","(q9lre5|dpod2_orysa : 169.0) DNA polymerase delta small subunit (EC 2.7.7.7) - Oryza sativa (Rice) & (at2g42120 : 159.0) DNA polymerase delta small subunit (POLD2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 318.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2016.12","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding"
"evm.model.contig_2017.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2020.7","No alias","Porphyridium purpureum","(at1g20370 : 101.0) Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA, C-terminal (InterPro:IPR020095), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT1G76120.1); Has 3883 Blast hits to 3550 proteins in 1359 species: Archae - 140; Bacteria - 2302; Metazoa - 346; Fungi - 312; Plants - 197; Viruses - 0; Other Eukaryotes - 586 (source: NCBI BLink). & (reliability: 202.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2025.67","No alias","Porphyridium purpureum","(at1g08540 : 107.0) Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.; RNApolymerase sigma subunit 2 (SIG2); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 region 1.2 (InterPro:IPR009042), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma-subunit F (TAIR:AT2G36990.1); Has 24116 Blast hits to 24030 proteins in 2811 species: Archae - 0; Bacteria - 17119; Metazoa - 4; Fungi - 2; Plants - 243; Viruses - 12; Other Eukaryotes - 6736 (source: NCBI BLink). & (reliability: 214.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2025.7","No alias","Porphyridium purpureum","(at4g02120 : 575.0) CTP synthase family protein; FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase family protein (TAIR:AT3G12670.1); Has 10891 Blast hits to 10859 proteins in 2938 species: Archae - 237; Bacteria - 5545; Metazoa - 255; Fungi - 228; Plants - 170; Viruses - 0; Other Eukaryotes - 4456 (source: NCBI BLink). & (reliability: 1150.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2031.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2032.28","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2033.2","No alias","Porphyridium purpureum","(at1g80480 : 142.0) plastid transcriptionally active 17 (PTAC17); LOCATED IN: plastid chromosome, chloroplast stroma, chloroplast, nucleoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: Cobalamin biosynthesis CobW-like protein (TAIR:AT1G15730.1); Has 22612 Blast hits to 14499 proteins in 1972 species: Archae - 190; Bacteria - 10146; Metazoa - 2946; Fungi - 801; Plants - 655; Viruses - 16; Other Eukaryotes - 7858 (source: NCBI BLink). & (gnl|cdd|68872 : 117.0) no description available & (reliability: 284.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2033.25","No alias","Porphyridium purpureum","(at1g62930 : 110.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G63130.1); Has 70585 Blast hits to 15409 proteins in 318 species: Archae - 8; Bacteria - 85; Metazoa - 1384; Fungi - 1397; Plants - 64906; Viruses - 0; Other Eukaryotes - 2805 (source: NCBI BLink). & (q76c99|rf1_orysa : 93.2) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (gnl|cdd|68872 : 87.4) no description available & (reliability: 216.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2033.31","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2051.38","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2051.39","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2053.8","No alias","Porphyridium purpureum","(at4g08550 : 124.0) electron carriers;protein disulfide oxidoreductases; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336), Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: glutaredoxin-related (TAIR:AT3G11920.1); Has 5684 Blast hits to 4425 proteins in 725 species: Archae - 19; Bacteria - 1130; Metazoa - 1053; Fungi - 285; Plants - 562; Viruses - 105; Other Eukaryotes - 2530 (source: NCBI BLink). & (reliability: 248.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2057.9","No alias","Porphyridium purpureum","(at3g25805 : 97.1) unknown protein; Has 98 Blast hits to 98 proteins in 45 species: Archae - 0; Bacteria - 51; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (reliability: 194.2) &  (original description: no original description)","protein_coding"
"evm.model.contig_2060.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2065.3","No alias","Porphyridium purpureum","(at3g10180 : 325.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G59540.1); Has 155291 Blast hits to 84008 proteins in 3275 species: Archae - 1854; Bacteria - 27736; Metazoa - 67441; Fungi - 13681; Plants - 10077; Viruses - 530; Other Eukaryotes - 33972 (source: NCBI BLink). & (p46869|fla10_chlre : 263.0) Kinesin-like protein FLA10 (Protein KHP1) - Chlamydomonas reinhardtii & (reliability: 650.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2065.7","No alias","Porphyridium purpureum","(p94026|rbcmt_tobac : 138.0) Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor (EC 2.1.1.127) ([Ribulose-bisphosphate carboxylase]-lysine N-methyltransferase) (RuBisCO methyltransferase) (RuBisCO LSMT) (rbcMT) & (at3g07670 : 137.0) Rubisco methyltransferase family protein; FUNCTIONS IN: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rubisco methyltransferase (InterPro:IPR011192), SET domain (InterPro:IPR001214), Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT5G14260.2); Has 1290 Blast hits to 1288 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 264; Fungi - 357; Plants - 465; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink). & (reliability: 274.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2068.23","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2070.22","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2070.24","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding"
"evm.model.contig_2070.3","No alias","Porphyridium purpureum","(at2g03820 : 363.0) nonsense-mediated mRNA decay NMD3 family protein; CONTAINS InterPro DOMAIN/s: NMD3 (InterPro:IPR007064); Has 480 Blast hits to 466 proteins in 217 species: Archae - 17; Bacteria - 0; Metazoa - 145; Fungi - 138; Plants - 63; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). & (reliability: 726.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2077.13","No alias","Porphyridium purpureum","(at2g13370 : 595.0) chromatin remodeling 5 (CHR5); FUNCTIONS IN: chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 38529 Blast hits to 28045 proteins in 2467 species: Archae - 189; Bacteria - 9973; Metazoa - 8887; Fungi - 6205; Plants - 2508; Viruses - 447; Other Eukaryotes - 10320 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 419.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1190.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2083.2","No alias","Porphyridium purpureum","(at5g01310 : 108.0) Encodes a protein that has adenylylsulfate sulfohydrolase activity (E.C. 3.6.2.1) in vitro.; APRATAXIN-like (APTX); FUNCTIONS IN: adenylylsulfatase activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: sulfur metabolic process, purine ribonucleotide metabolic process, regulation of transcription; LOCATED IN: intracellular, nucleus, chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Appr-1-p processing (InterPro:IPR002589), Histidine triad (HIT) protein (InterPro:IPR001310), Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Histidine triad motif (InterPro:IPR011151), Helix-loop-helix DNA-binding (InterPro:IPR011598), Histidine triad-like motif (InterPro:IPR011146), Histidine triad, conserved site (InterPro:IPR019808); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G21330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 216.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2085.7","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2088.7","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2090.3","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding"
"evm.model.contig_2090.6","No alias","Porphyridium purpureum","(at2g23290 : 138.0) Member of the R2R3 factor gene family.; myb domain protein 70 (MYB70); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 73 (TAIR:AT4G37260.1); Has 8736 Blast hits to 7850 proteins in 479 species: Archae - 0; Bacteria - 0; Metazoa - 756; Fungi - 600; Plants - 5377; Viruses - 3; Other Eukaryotes - 2000 (source: NCBI BLink). & (q50ex6|odo1_pethy : 92.4) ODORANT1 protein (MYB-like protein ODO1) - Petunia hybrida (Petunia) & (reliability: 276.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2094.8","No alias","Porphyridium purpureum","(at4g39910 : 213.0) Encodes a nuclear ubiquitin-specific protease.; ubiquitin-specific protease 3 (UBP3); CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 4 (TAIR:AT2G22310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 426.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2097.1","No alias","Porphyridium purpureum","(at1g06950 : 89.0) Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis.; translocon at the inner envelope membrane of chloroplasts 110 (TIC110); INVOLVED IN: protein import into chloroplast stroma, chloroplast organization; LOCATED IN: chloroplast, membrane, chloroplast envelope, Tic complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 131 Blast hits to 118 proteins in 52 species: Archae - 4; Bacteria - 6; Metazoa - 16; Fungi - 9; Plants - 66; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). & (reliability: 178.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2100.4","No alias","Porphyridium purpureum","(at3g27180 : 177.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: rRNA methylation; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00095 (InterPro:IPR004398); Has 4717 Blast hits to 4707 proteins in 1568 species: Archae - 39; Bacteria - 4296; Metazoa - 92; Fungi - 26; Plants - 68; Viruses - 1; Other Eukaryotes - 195 (source: NCBI BLink). & (reliability: 354.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2103.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2104.8","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2104.9","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding"
"evm.model.contig_2118.10","No alias","Porphyridium purpureum","(at1g08540 : 233.0) Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.; RNApolymerase sigma subunit 2 (SIG2); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 region 1.2 (InterPro:IPR009042), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma-subunit F (TAIR:AT2G36990.1); Has 24116 Blast hits to 24030 proteins in 2811 species: Archae - 0; Bacteria - 17119; Metazoa - 4; Fungi - 2; Plants - 243; Viruses - 12; Other Eukaryotes - 6736 (source: NCBI BLink). & (reliability: 466.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2122.25","No alias","Porphyridium purpureum","(at5g14720 : 322.0) Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G79640.1); Has 122716 Blast hits to 120970 proteins in 3289 species: Archae - 117; Bacteria - 14305; Metazoa - 44836; Fungi - 12007; Plants - 31268; Viruses - 500; Other Eukaryotes - 19683 (source: NCBI BLink). & (q5qn75|m2k1_orysa : 124.0) Mitogen-activated protein kinase kinase 1 (EC 2.7.12.2) (MAP kinase kinase 1) (MAPKK1) (OsMEK1) - Oryza sativa (Rice) & (reliability: 644.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2132.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2139.14","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2145.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2146.23","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2150.16","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2157.19","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2158.1","No alias","Porphyridium purpureum","(at5g01510 : 157.0) ROOT UV-B SENSITIVE 5 (RUS5); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT3G45890.1); Has 426 Blast hits to 424 proteins in 125 species: Archae - 0; Bacteria - 2; Metazoa - 111; Fungi - 69; Plants - 183; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink). & (reliability: 314.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2181.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2190.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2193.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2194.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2200.1","No alias","Porphyridium purpureum","(at5g39440 : 177.0) SNF1-related protein kinase 1.3 (SnRK1.3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Kinase-associated KA1 (InterPro:IPR001772), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Protein kinase, Snf1-like AMPK (InterPro:IPR015741), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: SNF1 kinase homolog 11 (TAIR:AT3G29160.2); Has 134559 Blast hits to 132128 proteins in 4775 species: Archae - 156; Bacteria - 15425; Metazoa - 49691; Fungi - 13625; Plants - 32691; Viruses - 538; Other Eukaryotes - 22433 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 159.0) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 354.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2209.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2216.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2255.9","No alias","Porphyridium purpureum","(at3g24530 : 131.0) AAA-type ATPase family protein / ankyrin repeat family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Ankyrin repeat-containing domain (InterPro:IPR020683), CbxX/CfqX (InterPro:IPR000641), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 1 in Arabidopsis thaliana (TAIR:AT2G28840.1); Has 62125 Blast hits to 27268 proteins in 1602 species: Archae - 369; Bacteria - 7189; Metazoa - 29752; Fungi - 5124; Plants - 2920; Viruses - 566; Other Eukaryotes - 16205 (source: NCBI BLink). & (reliability: 262.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2276.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2279.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2281.16","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2282.12","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2284.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2292.11","No alias","Porphyridium purpureum","(at5g20930 : 392.0) Nuclear serine/threonine protein kinase that requires a coiled-coil region for oligomerization and catalytic activity. Required for leaf and flower development. Expression localized to the developing style by stage 13.; TOUSLED (TSL); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ataurora3 (TAIR:AT2G45490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q6ret6|ccamk_pea : 105.0) Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase (EC 2.7.11.17) (PsCCaMK) (Ps-SYM9) (Fragment) - Pisum sativum (Garden pea) & (reliability: 784.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2292.8","No alias","Porphyridium purpureum","(at4g09730 : 239.0) Encodes RH39, a DEAD-box protein involved in the introduction of the hidden break into the 23S rRNA in the chloroplasts. Recombinant RH39 binds to the 23S rRNA in a segment adjacent to the stem-loop creating the hidden break target loop in a sequence-dependent manner. Has ATP-hydrolyzing activity at a Kcat of 5.3 /min in the presence of rRNA sequence. Mutants have drastically reduced level of level of ribulose 1,5-bisphosphate carboxylase/oxygenase.; RH39 (RH39); FUNCTIONS IN: LSU rRNA binding, ATPase activity, ATP-dependent helicase activity; INVOLVED IN: chloroplast ribulose bisphosphate carboxylase complex biogenesis, chloroplast rRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT3G06980.1); Has 40425 Blast hits to 39698 proteins in 3032 species: Archae - 675; Bacteria - 19989; Metazoa - 5933; Fungi - 4498; Plants - 2407; Viruses - 9; Other Eukaryotes - 6914 (source: NCBI BLink). & (p46942|db10_nicsy : 138.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 478.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2293.21","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2293.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2302.9","No alias","Porphyridium purpureum","(at1g08540 : 231.0) Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.; RNApolymerase sigma subunit 2 (SIG2); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 region 1.2 (InterPro:IPR009042), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma-subunit F (TAIR:AT2G36990.1); Has 24116 Blast hits to 24030 proteins in 2811 species: Archae - 0; Bacteria - 17119; Metazoa - 4; Fungi - 2; Plants - 243; Viruses - 12; Other Eukaryotes - 6736 (source: NCBI BLink). & (reliability: 462.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2308.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2316.3","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding"
"evm.model.contig_2339.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2343.8","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding"
"evm.model.contig_2349.7","No alias","Porphyridium purpureum","(at1g31230 : 660.0) Encodes a bifunctional aspartate kinase/homoserine dehydrogenase.  These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine.; aspartate kinase-homoserine dehydrogenase i (AK-HSDH I); FUNCTIONS IN: homoserine dehydrogenase activity, aspartate kinase activity; INVOLVED IN: aspartate family amino acid biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Homoserine dehydrogenase, catalytic (InterPro:IPR001342), Amino acid-binding ACT (InterPro:IPR002912), Aspartate/homoserine dehydrogenase, NAD-binding (InterPro:IPR005106), Aspartate kinase, conserved site (InterPro:IPR018042), Bifunctional aspartokinase/homoserine dehydrogenase I (InterPro:IPR011147), NAD(P)-binding domain (InterPro:IPR016040), Aspartate kinase domain (InterPro:IPR001341), Homoserine dehydrogenase, conserved site (InterPro:IPR019811); BEST Arabidopsis thaliana protein match is: aspartate kinase-homoserine dehydrogenase ii (TAIR:AT4G19710.2); Has 17266 Blast hits to 16993 proteins in 2572 species: Archae - 397; Bacteria - 11403; Metazoa - 7; Fungi - 300; Plants - 257; Viruses - 0; Other Eukaryotes - 4902 (source: NCBI BLink). & (p49080|akh2_maize : 655.0) Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplast precursor (AK-HD 2) (AK-HSDH 2) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] - Zea mays (Maize) & (reliability: 1320.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2350.7","No alias","Porphyridium purpureum","(at5g25150 : 112.0) Encodes a putative TATA-binding-protein associated factor TAF5.  TAFs are subunits of the general transcription factor IID (TFIID).; TBP-associated factor 5 (TAF5); FUNCTIONS IN: transcription regulator activity, nucleotide binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: guard cell, root, inflorescence, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781), TFIID subunit, WD40-associated region (InterPro:IPR007582); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 114463 Blast hits to 42274 proteins in 991 species: Archae - 68; Bacteria - 11258; Metazoa - 46869; Fungi - 25620; Plants - 15010; Viruses - 3; Other Eukaryotes - 15635 (source: NCBI BLink). & (p93340|gblp_nicpl : 94.0) Guanine nucleotide-binding protein subunit beta-like protein - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (reliability: 202.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2357.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2360.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2421.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2444.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2492.5","No alias","Porphyridium purpureum","(at2g44920 : 128.0) Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: Pentapeptide repeat-containing protein (TAIR:AT1G12250.1); Has 15593 Blast hits to 6460 proteins in 916 species: Archae - 263; Bacteria - 11679; Metazoa - 260; Fungi - 2; Plants - 261; Viruses - 44; Other Eukaryotes - 3084 (source: NCBI BLink). & (reliability: 256.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2500.10","No alias","Porphyridium purpureum","(at5g19370 : 80.5) rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein; FUNCTIONS IN: isomerase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Peptidyl-prolyl cis-trans isomerase, PpiC-type (InterPro:IPR000297); BEST Arabidopsis thaliana protein match is: co-factor for nitrate, reductase and xanthine dehydrogenase 5 (TAIR:AT5G55130.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 161.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2501.6","No alias","Porphyridium purpureum","(at4g08690 : 106.0) Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G22180.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 212.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2503.2","No alias","Porphyridium purpureum",""(at5g56290 : 222.0) Encodes the peroxisomal targeting signal type 1 receptor that facilitates peroxisomal protein translocation. It recognizes proteins with the PTS1 consensus sequence (tripeptide SKL or a conserved variant) at the extreme C terminus.  The protein has several domains, including C-terminal tetratricopeptide repeat motifs which act in binding the C-terminal ""SKL"" targeting signal.  The mechanism of transport has been worked out in other organisms:  The receptor recognizes and binds cytosolic PTS1-containing proteins.  The PEX5-PTS1 complex binds a PEX14/PEX13 receptor complex at the peroxisome membrane and is translocated into the peroxisome matrix in a process dependent on PEX2,PEX10, and PEX12.  In the peroxisome matrix, PEX5 releases its cargo and is recycled to the cytosol in a process dependent on PEX1, PEX4, PEX6 and PEX22.  It is also involved, in conjunction with PEX7, in PTS1- and PTS2-dependent peroxisomal protein import.  RNAi experiments suggest that PEX5 is necessary for the maintenance of both glyoxysomal and leaf peroxisomal functions.; peroxin 5 (PEX5); CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (gnl|cdd|68872 : 142.0) no description available & (gnl|cdd|39774 : 85.9) no description available & (reliability: 444.0) &  (original description: no original description)"","protein_coding"
"evm.model.contig_2504.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2528.1","No alias","Porphyridium purpureum","(at3g13772 : 82.8) Encodes an Arabidopsis Transmembrane nine (TMN) protein.  Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis.  Overexpression of this protein in yeast alters copper and zinc homeostasis.; transmembrane nine 7 (TMN7); INVOLVED IN: cellular copper ion homeostasis, cellular zinc ion homeostasis; LOCATED IN: integral to membrane, Golgi apparatus, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT1G55130.1); Has 1568 Blast hits to 1544 proteins in 321 species: Archae - 0; Bacteria - 1; Metazoa - 615; Fungi - 232; Plants - 456; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink). & (reliability: 165.6) &  (original description: no original description)","protein_coding"
"evm.model.contig_2552.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2623.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2624.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2688.2","No alias","Porphyridium purpureum","(at2g03430 : 101.0) Ankyrin repeat family protein; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 130068 Blast hits to 38689 proteins in 1585 species: Archae - 162; Bacteria - 14649; Metazoa - 59864; Fungi - 13189; Plants - 7735; Viruses - 2061; Other Eukaryotes - 32408 (source: NCBI BLink). & (q8vyx2|akt1_orysa : 90.9) Potassium channel AKT1 (OsAKT1) - Oryza sativa (Rice) & (reliability: 202.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2696.1","No alias","Porphyridium purpureum","(at5g41790 : 84.3) encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light.; COP1-interactive protein 1 (CIP1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of protein import into nucleus; LOCATED IN: cytoskeleton, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G64330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 168.6) &  (original description: no original description)","protein_coding"
"evm.model.contig_2715.1","No alias","Porphyridium purpureum","(at5g55580 : 114.0) Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT1G78930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 228.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2717.1","No alias","Porphyridium purpureum","(q43846|ssy3_soltu : 103.0) Soluble starch synthase 3, chloroplast precursor (EC 2.4.1.21) (SS III) (Soluble starch synthase III) - Solanum tuberosum (Potato) & (at4g18240 : 94.0) starch synthase 4 (SS4); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: starch metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: starch synthase 3 (TAIR:AT1G11720.1); Has 55451 Blast hits to 38117 proteins in 4040 species: Archae - 1014; Bacteria - 10985; Metazoa - 22418; Fungi - 3875; Plants - 6050; Viruses - 242; Other Eukaryotes - 10867 (source: NCBI BLink). & (reliability: 188.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3383.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3395.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3396.13","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3401.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3404.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3404.9","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding"
"evm.model.contig_3411.1","No alias","Porphyridium purpureum","(at1g18260 : 84.3) HCP-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G73570.1); Has 24350 Blast hits to 8436 proteins in 1359 species: Archae - 0; Bacteria - 17163; Metazoa - 848; Fungi - 960; Plants - 547; Viruses - 27; Other Eukaryotes - 4805 (source: NCBI BLink). & (reliability: 166.4) &  (original description: no original description)","protein_coding"
"evm.model.contig_3412.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3415.13","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3415.6","No alias","Porphyridium purpureum","(at1g80930 : 286.0) MIF4G domain-containing protein / MA3 domain-containing protein; FUNCTIONS IN: RNA binding, binding; INVOLVED IN: translation, RNA metabolic process; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: Initiation factor eIF-4 gamma, MA3 (TAIR:AT1G52325.1); Has 51676 Blast hits to 28577 proteins in 1484 species: Archae - 86; Bacteria - 5039; Metazoa - 22313; Fungi - 6500; Plants - 3817; Viruses - 357; Other Eukaryotes - 13564 (source: NCBI BLink). & (reliability: 572.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3419.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3425.1","No alias","Porphyridium purpureum","(p49086|crti_maize : 627.0) Phytoene dehydrogenase, chloroplast precursor (EC 1.14.99.-) (Phytoene desaturase) - Zea mays (Maize) & (at4g14210 : 613.0) Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastid.; phytoene desaturase 3 (PDS3); FUNCTIONS IN: phytoene dehydrogenase activity; INVOLVED IN: carotenoid biosynthetic process, carotene biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Phytoene desaturase (InterPro:IPR014102); BEST Arabidopsis thaliana protein match is: zeta-carotene desaturase (TAIR:AT3G04870.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1226.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3425.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3426.10","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding"
"evm.model.contig_3426.11","No alias","Porphyridium purpureum","(at4g26970 : 197.0) Encodes an aconitase that can catalyze the conversion of citrate to isocitrate through a cis-aconitate intermediate, indicating that it may participate in the TCA cycle and other primary metabolic pathways. The protein is believed to accumulate in the mitochondria and the cytosol. It affects CSD2 (At2g28190 - a superoxide dismutase) transcript levels and may play a role in the response to oxidative stress. One member of the family (ACO1 - At35830) was shown to specifically bind to the 5' UTR of CSD2 in vitro.; aconitase 2 (ACO2); FUNCTIONS IN: aconitate hydratase activity, copper ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, isocitrate metabolic process, citrate metabolic process; LOCATED IN: cytosol, mitochondrion, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Aconitase family, 4Fe-4S cluster binding site (InterPro:IPR018136), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha (InterPro:IPR001030), Aconitase A/isopropylmalate dehydratase small subunit, swivel (InterPro:IPR000573), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 (InterPro:IPR015932), Aconitase/Iron regulatory protein 2/2-methylisocitrate dehydratase (InterPro:IPR015934), Aconitase/3-isopropylmalate dehydratase, swivel (InterPro:IPR015928), Aconitase-like core (InterPro:IPR015937), Aconitase/iron regulatory protein 2 (InterPro:IPR006249), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 (InterPro:IPR015931); BEST Arabidopsis thaliana protein match is: aconitase 3 (TAIR:AT2G05710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p49608|acoc_cucma : 191.0) Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) - Cucurbita maxima (Pumpkin) (Winter squash) & (reliability: 394.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3441.17","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3446.12","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3467.1","No alias","Porphyridium purpureum","(at4g31600 : 103.0) UDP-N-acetylglucosamine (UAA) transporter family; INVOLVED IN: transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT4G32272.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (gnl|cdd|68872 : 84.3) no description available & (reliability: 206.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3468.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3494.6","No alias","Porphyridium purpureum","(at5g06420 : 114.0) Zinc finger (CCCH-type/C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; LOCATED IN: membrane; EXPRESSED IN: male gametophyte, pollen tube, leaf; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (TAIR:AT1G01350.1); Has 883 Blast hits to 880 proteins in 224 species: Archae - 0; Bacteria - 1; Metazoa - 340; Fungi - 209; Plants - 163; Viruses - 0; Other Eukaryotes - 170 (source: NCBI BLink). & (reliability: 228.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3498.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3510.7","No alias","Porphyridium purpureum","(at3g17000 : 173.0) ubiquitin-conjugating enzyme 32 (UBC32); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 34 (TAIR:AT1G17280.2); Has 7916 Blast hits to 7914 proteins in 379 species: Archae - 0; Bacteria - 0; Metazoa - 3544; Fungi - 1602; Plants - 1492; Viruses - 20; Other Eukaryotes - 1258 (source: NCBI BLink). & (reliability: 346.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3545.2","No alias","Porphyridium purpureum","(at4g36650 : 89.7) Encodes a protein with similarity to the general transcription factor TFIIB. pBRP binds rDNA sequences in vitro. pBRP has been localized to the outer face of the plastid membrane with GFP fusion however, under conditions of proteosome inhibition it is found in the nucleus.; plant-specific TFIIB-related protein (PBRP); FUNCTIONS IN: RNA polymerase II transcription factor activity, rDNA binding; INVOLVED IN: translational initiation, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: plastid outer membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: transcription factor IIB (TAIR:AT2G41630.1); Has 1297 Blast hits to 1296 proteins in 319 species: Archae - 504; Bacteria - 1; Metazoa - 214; Fungi - 180; Plants - 140; Viruses - 3; Other Eukaryotes - 255 (source: NCBI BLink). & (reliability: 179.4) &  (original description: no original description)","protein_coding"
"evm.model.contig_3546.1","No alias","Porphyridium purpureum","(at4g02260 : 263.0) RELA/SPOT homolog 1 (RSH1); FUNCTIONS IN: catalytic activity; INVOLVED IN: response to wounding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), TGS-like (InterPro:IPR012676), TGS (InterPro:IPR004095), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 3 (TAIR:AT1G54130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 526.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3550.2","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding"
"evm.model.contig_3551.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3572.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3576.1","No alias","Porphyridium purpureum","(at5g55310 : 481.0) Encodes one of two Arabidopsis type-I DNA topoisomerase I genes.  Reducing the level of expression of this gene in a top1alpha (At5g55300) mutant background causes seedling lethality.; DNA topoisomerase 1 beta (TOP1BETA); FUNCTIONS IN: DNA topoisomerase type I activity; INVOLVED IN: DNA topological change; LOCATED IN: membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, DNA binding, mixed alpha/beta motif, eukaryotic-type (InterPro:IPR013030), DNA topoisomerase I, DNA binding, eukaryotic-type (InterPro:IPR008336), DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010); BEST Arabidopsis thaliana protein match is: DNA topoisomerase I alpha (TAIR:AT5G55300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p93119|top1_dauca : 401.0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) - Daucus carota (Carrot) & (reliability: 962.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3585.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3606.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3616.1","No alias","Porphyridium purpureum","(p37822|arog_soltu : 472.0) Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 2) (DAHP synthetase 2) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2) - Solanum tuberosum (Potato) & (at4g39980 : 469.0) Encodes a 2-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase, which catalyzes the first committed step in aromatic amino acid biosynthesis. Gene expression is induced by wounding and pathogenic bacteria Pseudomonas syringae.; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1 (DHS1); CONTAINS InterPro DOMAIN/s: DAHP synthetase, class II (InterPro:IPR002480); BEST Arabidopsis thaliana protein match is: Class-II DAHP synthetase family protein (TAIR:AT1G22410.1); Has 3797 Blast hits to 3784 proteins in 681 species: Archae - 0; Bacteria - 1224; Metazoa - 0; Fungi - 110; Plants - 172; Viruses - 0; Other Eukaryotes - 2291 (source: NCBI BLink). & (reliability: 938.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3638.1","No alias","Porphyridium purpureum","(at5g60550 : 130.0) Encodes a geminivirus Rep interacting kinase (GRIK; GRIK1/AT3G45240, GRIK2/AT5G60550). GRIKs are SnRK1 (SNF1-related kinases) activating kinases. Both GRIKs specifically bind to the SnRK1 catalytic subunit and phosphorylate the equivalent threonine residue in its activation loop in vitro.; geminivirus rep interacting kinase 2 (GRIK2); CONTAINS InterPro DOMAIN/s: Calcium/calmodulin-dependent protein kinase kinase (InterPro:IPR020657), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: geminivirus rep interacting kinase 1 (TAIR:AT3G45240.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 107.0) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 260.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3812.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_429.14","No alias","Porphyridium purpureum","(at2g30360 : 169.0) Encodes a SOS2-like protein kinase that is a member of the CBL-interacting protein kinase family.Loss of function mutants show a decrease in sensitivity to high pH.Phosphorylates AHA2, a plasma membrane H+ ATPase.This phosphorylation appears to regulate the activity of the proton transporter.; SOS3-interacting protein 4 (SIP4); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase 1 (TAIR:AT5G01820.1); Has 132389 Blast hits to 130226 proteins in 4650 species: Archae - 184; Bacteria - 15582; Metazoa - 48520; Fungi - 13393; Plants - 32054; Viruses - 541; Other Eukaryotes - 22115 (source: NCBI BLink). & (p28582|cdpk_dauca : 168.0) Calcium-dependent protein kinase (EC 2.7.11.1) (CDPK) - Daucus carota (Carrot) & (reliability: 316.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_430.6","No alias","Porphyridium purpureum","(at5g60620 : 305.0) Glycerol-3-phosphate acyltransferase localized to the ER. Similar to mammalian cells involved in storage oil formation.; glycerol-3-phosphate acyltransferase 9 (GPAT9); FUNCTIONS IN: acyltransferase activity; INVOLVED IN: triglyceride biosynthetic process, diacylglycerol biosynthetic process, metabolic process; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: Phospholipid/glycerol acyltransferase family protein (TAIR:AT1G80950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 610.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4401.7","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4404.22","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4406.9","No alias","Porphyridium purpureum","(at5g46840 : 108.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G13224.2); Has 3214 Blast hits to 3009 proteins in 274 species: Archae - 0; Bacteria - 38; Metazoa - 1562; Fungi - 589; Plants - 622; Viruses - 0; Other Eukaryotes - 403 (source: NCBI BLink). & (reliability: 216.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4408.13","No alias","Porphyridium purpureum","(at2g26470 : 105.0) unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF159 (InterPro:IPR003738); Has 3646 Blast hits to 3636 proteins in 1001 species: Archae - 41; Bacteria - 1922; Metazoa - 142; Fungi - 125; Plants - 44; Viruses - 14; Other Eukaryotes - 1358 (source: NCBI BLink). & (reliability: 210.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_441.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4410.13","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4413.6","No alias","Porphyridium purpureum","(at3g20800 : 372.0) Cell differentiation, Rcd1-like protein; CONTAINS InterPro DOMAIN/s: Cell differentiation, Rcd1-like (InterPro:IPR007216); BEST Arabidopsis thaliana protein match is: Cell differentiation, Rcd1-like protein (TAIR:AT5G12980.1); Has 491 Blast hits to 488 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 135; Plants - 110; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink). & (reliability: 744.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4418.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4418.12","No alias","Porphyridium purpureum","(at1g77680 : 359.0) Ribonuclease II/R family protein; FUNCTIONS IN: ribonuclease activity, RNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease II/R (InterPro:IPR001900); BEST Arabidopsis thaliana protein match is: ribonuclease II family protein (TAIR:AT2G17510.1); Has 8235 Blast hits to 8065 proteins in 2328 species: Archae - 43; Bacteria - 5411; Metazoa - 476; Fungi - 391; Plants - 139; Viruses - 2; Other Eukaryotes - 1773 (source: NCBI BLink). & (reliability: 718.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4419.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4419.4","No alias","Porphyridium purpureum","(at4g21540 : 120.0) Encodes a sphingosine kinase, also has enzyme activity towards other plant long-chain sphingoid bases. Involved in guard cell ABA signalling and seed germination.; sphingosine kinase 1 (SPHK1); FUNCTIONS IN: diacylglycerol kinase activity, sphinganine kinase activity, D-erythro-sphingosine kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, seed germination, response to abscisic acid stimulus; LOCATED IN: plant-type vacuole membrane, vacuole; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic domain (InterPro:IPR001206); BEST Arabidopsis thaliana protein match is: Diacylglycerol kinase family protein (TAIR:AT4G21534.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 222.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4425.2","No alias","Porphyridium purpureum","(p43284|trpb2_maize : 616.0) Tryptophan synthase beta chain 2, chloroplast precursor (EC 4.2.1.20) (Orange pericarp 2) (Fragment) - Zea mays (Maize) & (at5g54810 : 609.0) A.thaliana tryptophan synthase beta subunit (trpB); tryptophan synthase beta-subunit 1 (TSB1); FUNCTIONS IN: tryptophan synthase activity; INVOLVED IN: response to oxidative stress, tryptophan biosynthetic process, response to salt stress, indoleacetic acid biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: guard cell, root; CONTAINS InterPro DOMAIN/s: Tryptophan synthase, beta chain (InterPro:IPR006654), Tryptophan synthase, beta chain, conserved site (InterPro:IPR006653), Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926); BEST Arabidopsis thaliana protein match is: tryptophan synthase beta-subunit 2 (TAIR:AT4G27070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1218.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_443.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_443.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_443.8","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4438.18","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_445.4","No alias","Porphyridium purpureum","(q7xzf7|gyra_orysa : 655.0) Probable DNA gyrase subunit A, chloroplast/mitochondrial precursor (EC 5.99.1.3) - Oryza sativa (Rice) & (at3g10690 : 652.0) DNA GYRASE A (GYRA); FUNCTIONS IN: DNA topoisomerase activity, catalytic activity, ATP binding; INVOLVED IN: DNA topological change, DNA metabolic process; LOCATED IN: mitochondrion, chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA gyrase, subunit A (InterPro:IPR005743), DNA topoisomerase, type IIA, subunit A/C-terminal (InterPro:IPR002205), DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta (InterPro:IPR013758), DNA topoisomerase, type IIA, subunit A, alpha-helical (InterPro:IPR013757), DNA topoisomerase, type IIA, central (InterPro:IPR013760), DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel (InterPro:IPR006691); BEST Arabidopsis thaliana protein match is: topoisomerase II (TAIR:AT3G23890.1); Has 22353 Blast hits to 21396 proteins in 3265 species: Archae - 84; Bacteria - 12907; Metazoa - 182; Fungi - 204; Plants - 111; Viruses - 99; Other Eukaryotes - 8766 (source: NCBI BLink). & (reliability: 1304.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4465.13","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4465.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4465.7","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4476.15","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4476.21","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4491.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4491.16","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4503.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4574.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_458.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_462.5","No alias","Porphyridium purpureum","(at2g22870 : 95.5) embryo defective 2001 (EMB2001); FUNCTIONS IN: GTP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein, ribosome biogenesis,  YsxC (InterPro:IPR019987); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G11480.1); Has 7972 Blast hits to 7922 proteins in 2512 species: Archae - 103; Bacteria - 5806; Metazoa - 98; Fungi - 230; Plants - 215; Viruses - 0; Other Eukaryotes - 1520 (source: NCBI BLink). & (reliability: 191.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_464.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_468.12","No alias","Porphyridium purpureum","(at5g26742 : 306.0) embryo defective 1138 (emb1138); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), GUCT (InterPro:IPR012562), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, CCHC-type (InterPro:IPR001878), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: putative mitochondrial RNA helicase 2 (TAIR:AT3G22330.1). & (q41382|rh7_spiol : 305.0) DEAD-box ATP-dependent RNA helicase 7 (EC 3.6.1.-) - Spinacia oleracea (Spinach) & (reliability: 612.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_468.7","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_469.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_471.2","No alias","Porphyridium purpureum","(at3g11945 : 266.0) Encodes a protein involved in plastoquinone-9 biosynthesis. The enzyme possesses homogentisate prenyltransferase activity and was shown to use solanesyl diphosphate, farnesyl diphosphate and geranylgeranyldiphosphate as prenyl donors, but not phytyldiphosphate.  This gene At3g11945 derives from a split of At3g11950, publications Tian et al (2007) and Sadre et al (2006) refer to this gene as At3g11950.; homogentisate prenyltransferase (HST); CONTAINS InterPro DOMAIN/s: UbiA prenyltransferase (InterPro:IPR000537); BEST Arabidopsis thaliana protein match is: homogentisate phytyltransferase 1 (TAIR:AT2G18950.1); Has 1367 Blast hits to 1364 proteins in 371 species: Archae - 252; Bacteria - 598; Metazoa - 1; Fungi - 4; Plants - 199; Viruses - 0; Other Eukaryotes - 313 (source: NCBI BLink). & (reliability: 532.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_474.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_479.8","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_482.16","No alias","Porphyridium purpureum","(at2g35450 : 158.0) catalytics;hydrolases; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidohydrolase 2 (InterPro:IPR006992); Has 1373 Blast hits to 1373 proteins in 381 species: Archae - 4; Bacteria - 1000; Metazoa - 6; Fungi - 6; Plants - 45; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink). & (reliability: 316.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_482.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_489.8","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_493.17","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_493.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_493.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_494.8","No alias","Porphyridium purpureum","(at3g50530 : 112.0) CDPK-related kinase; CDPK-related kinase (CRK); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: CDPK-related kinase 1 (TAIR:AT2G41140.1). & (reliability: 224.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_497.7","No alias","Porphyridium purpureum","(at1g09300 : 224.0) Metallopeptidase M24 family protein; FUNCTIONS IN: metallopeptidase activity, manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P  N-terminal (InterPro:IPR007865), Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: Metallopeptidase M24 family protein (TAIR:AT4G29490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 448.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_502.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_503.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_504.6","No alias","Porphyridium purpureum","(q41382|rh7_spiol : 210.0) DEAD-box ATP-dependent RNA helicase 7 (EC 3.6.1.-) - Spinacia oleracea (Spinach) & (at3g22310 : 205.0) Sequence similarity ot DEAD-box RNA helicases. Binds RNA and DNA. Involved in drought, salt and cold stress responses.; putative mitochondrial RNA helicase 1 (PMH1); CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: putative mitochondrial RNA helicase 2 (TAIR:AT3G22330.1); Has 154573 Blast hits to 81509 proteins in 3841 species: Archae - 1406; Bacteria - 64973; Metazoa - 34940; Fungi - 12014; Plants - 11424; Viruses - 1269; Other Eukaryotes - 28547 (source: NCBI BLink). & (reliability: 372.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_505.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_510.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_510.15","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_522.1","No alias","Porphyridium purpureum","(q9bae0|ftsh_medsa : 654.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Medicago sativa (Alfalfa) & (at5g42270 : 652.0) VAR1 contains a conserved motif for ATPase and a metalloprotease characteristic to FtsH proteins, and is targeted into chloroplasts. A VAR1-fusion protein synthesized in vitro exhibited ATPase activity and partial metalloprotease activity. This protein is located to the thylakoid membrane and forms a complex with VAR2. FtsH1 (VAR1) and FtsH5 are interchangeable in thylakoid membranes.; VARIEGATED 1 (VAR1); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: photoinhibition, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1304.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_522.10","No alias","Porphyridium purpureum","(at4g27630 : 139.0) Encodes a GPCR-type G protein receptor with nine predicted transmembrane domains. The protein binds abscisic acid (ABA) and is predicted to function as an ABA receptor. It has GTP-binding and GTPase activity and binds to ABA more effectively in the presence of GDP. GTG2 binds to GPA1, the alpha subunit of the heterotrimeric G protein.  GPA1 (in its GTP-bound state) affects the GTP binding and GTPase activity of GTG2 and may act to down-regulate GTG2 binding to ABA. GTG2 is widely expressed throughout the plant and appears to be involved in the regulation of several ABA-dependent responses including seed germination, plant development, and promotion of stomatal closure. GTG2 transcript levels do not appear to change in response to ABA or abiotic stresses.; GPCR-type G protein 2 (GTG2); CONTAINS InterPro DOMAIN/s: GPCR 89-related (InterPro:IPR015672), Protein of unknown function DUF3735 (InterPro:IPR022535); BEST Arabidopsis thaliana protein match is: GPCR-type G protein 1 (TAIR:AT1G64990.2). & (reliability: 278.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_522.18","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_525.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_525.4","No alias","Porphyridium purpureum","(at4g33540 : 212.0) metallo-beta-lactamase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: response to arsenic, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); Has 1592 Blast hits to 1592 proteins in 436 species: Archae - 145; Bacteria - 835; Metazoa - 30; Fungi - 10; Plants - 78; Viruses - 0; Other Eukaryotes - 494 (source: NCBI BLink). & (reliability: 424.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_531.16","No alias","Porphyridium purpureum","(at5g54760 : 103.0) Translation initiation factor SUI1 family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation, translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Eukaryotic translation initiation factor SUI1 (InterPro:IPR005874); BEST Arabidopsis thaliana protein match is: Translation initiation factor SUI1 family protein (TAIR:AT4G27130.1). & (p33278|sui1_orysa : 103.0) Protein translation factor SUI1 homolog (Protein GOS2) (Translational initiation factor 1) (Protein eIF1) - Oryza sativa (Rice) & (reliability: 206.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_537.8","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_542.5","No alias","Porphyridium purpureum","(at1g45160 : 338.0) Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G17850.1); Has 126537 Blast hits to 124799 proteins in 4593 species: Archae - 166; Bacteria - 15103; Metazoa - 47179; Fungi - 12961; Plants - 29525; Viruses - 530; Other Eukaryotes - 21073 (source: NCBI BLink). & (p47997|g11a_orysa : 176.0) Protein kinase G11A (EC 2.7.11.1) - Oryza sativa (Rice) & (reliability: 676.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_545.13","No alias","Porphyridium purpureum","(at1g17850 : 107.0) Rhodanese/Cell cycle control phosphatase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT2G40760.1). & (reliability: 214.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_546.5","No alias","Porphyridium purpureum","(at1g13460 : 278.0) Encodes protein phosphatase 2A (PP2A) B'theta subunit.  Targeted to peroxisomes.; Protein phosphatase 2A regulatory B subunit family protein; FUNCTIONS IN: protein phosphatase type 2A regulator activity; INVOLVED IN: signal transduction; LOCATED IN: peroxisome, protein phosphatase type 2A complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory B subunit, B56 (InterPro:IPR002554); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2A regulatory B subunit family protein (TAIR:AT3G26020.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 556.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_567.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_568.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_568.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_569.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_632.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_660.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_759.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_785.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_833.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000025.45","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000042.158","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000042.167","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000057.81","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000076.85","No alias","Cyanophora paradoxa","(at1g03630 : 342.0) Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent.; protochlorophyllide oxidoreductase C (POR C); FUNCTIONS IN: oxidoreductase activity, NADPH dehydrogenase activity, protochlorophyllide reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Light-dependent protochlorophyllide reductase (InterPro:IPR005979), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: protochlorophyllide oxidoreductase A (TAIR:AT5G54190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q42850|porb_horvu : 337.0) Protochlorophyllide reductase B, chloroplast precursor (EC 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) - Hordeum vulgare (Barley) & (reliability: 684.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000093.108","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000093.116","No alias","Cyanophora paradoxa","(at5g10720 : 81.6) member of Histidine Kinase; histidine kinase 5 (HK5); FUNCTIONS IN: protein histidine kinase activity; INVOLVED IN: cytokinin mediated signaling pathway; LOCATED IN: vacuole; EXPRESSED IN: male gametophyte, root; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CheY-like (InterPro:IPR011006), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), ATPase-like, ATP-binding domain (InterPro:IPR003594), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein-related (TAIR:AT5G10680.1); Has 142896 Blast hits to 126384 proteins in 3154 species: Archae - 1152; Bacteria - 126386; Metazoa - 257; Fungi - 2334; Plants - 2049; Viruses - 33; Other Eukaryotes - 10685 (source: NCBI BLink). & (reliability: 163.2) &  (original description: no original description)","protein_coding"
"evm.model.tig00000113.30","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000135.1","No alias","Cyanophora paradoxa","(at1g32900 : 423.0) UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: protein binding, transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, glucan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: starch synthase 2 (TAIR:AT3G01180.1); Has 13950 Blast hits to 13932 proteins in 3602 species: Archae - 351; Bacteria - 6813; Metazoa - 7; Fungi - 173; Plants - 5477; Viruses - 0; Other Eukaryotes - 1129 (source: NCBI BLink). & (q43092|ssg1_pea : 412.0) Granule-bound starch synthase 1, chloroplast precursor (EC 2.4.1.242) (Granule-bound starch synthase I) (GBSS-I) - Pisum sativum (Garden pea) & (reliability: 846.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000140.10","No alias","Cyanophora paradoxa","(at1g72960 : 144.0) Root hair defective 3 GTP-binding protein (RHD3); CONTAINS InterPro DOMAIN/s: Root hair defective 3 GTP-binding (InterPro:IPR008803); BEST Arabidopsis thaliana protein match is: Root hair defective 3 GTP-binding protein (RHD3) (TAIR:AT3G13870.1); Has 479 Blast hits to 469 proteins in 183 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 185; Plants - 127; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink). & (reliability: 288.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000140.11","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000144.20","No alias","Cyanophora paradoxa","(at1g74470 : 559.0) Encodes for a multifunctional protein with geranylgeranyl reductase activity shown to catalyze the reduction of prenylated geranylgeranyl-chlorophyll a to phytyl-chlorophyll a (chlorophyll a) and free geranylgeranyl pyrophosphate to phytyl pyrophosphate.; Pyridine nucleotide-disulphide oxidoreductase family protein; FUNCTIONS IN: geranylgeranyl reductase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Geranylgeranyl reductase (InterPro:IPR010253), Geranylgeranyl reductase, plant/cyanobacteria (InterPro:IPR011774), Geranylgeranyl reductase, plant/prokaryotic (InterPro:IPR011777); Has 4540 Blast hits to 4539 proteins in 1185 species: Archae - 562; Bacteria - 2644; Metazoa - 5; Fungi - 25; Plants - 302; Viruses - 0; Other Eukaryotes - 1002 (source: NCBI BLink). & (reliability: 1118.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000144.38","No alias","Cyanophora paradoxa","(at5g52920 : 432.0) encodes a dominant chloroplast pyruvate kinase beta subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds. The mutant plant has wrinkled seeds, with a 50-70% reduction in seed fatty acid content.; plastidic pyruvate kinase beta subunit 1 (PKP-BETA1); FUNCTIONS IN: pyruvate kinase activity; INVOLVED IN: response to cadmium ion, glycolysis, seed development, fatty acid biosynthetic process, lipid metabolic process; LOCATED IN: mitochondrion, chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: plastidial pyruvate kinase 3 (TAIR:AT1G32440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q43117|kpya_ricco : 427.0) Pyruvate kinase isozyme A, chloroplast precursor (EC 2.7.1.40) - Ricinus communis (Castor bean) & (reliability: 864.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000157.104","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000157.36","No alias","Cyanophora paradoxa","(p09043|g3pa_tobac : 459.0) Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) (Fragment) - Nicotiana tabacum (Common tobacco) & (at3g26650 : 457.0) Encodes one of the two subunits forming the photosynthetic glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and as such a constituent of the supramolecular complex with phosphoribulokinase (PRK) thought to be linked by a small peptide encoded by CP12-2. GapA-1 is coordinately expressed by light with PRK and CP12-2. The enzyme activity, tested in leaf protein extracts dropped significantly after external sucrose treatment for the photosynthetic GAPDH (NADPH-dependent) but not for the cytosolic GAPDH (NADH-dependent).; glyceraldehyde 3-phosphate dehydrogenase A subunit (GAPA); FUNCTIONS IN: protein binding, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde 3-phosphate dehydrogenase family (InterPro:IPR020831), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828); BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit 2 (TAIR:AT1G12900.1); Has 24893 Blast hits to 24884 proteins in 6192 species: Archae - 47; Bacteria - 10870; Metazoa - 2226; Fungi - 2780; Plants - 3758; Viruses - 0; Other Eukaryotes - 5212 (source: NCBI BLink). & (reliability: 914.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000204.28","No alias","Cyanophora paradoxa","(at5g02540 : 142.0) NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G37540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 284.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000241.103","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000241.13","No alias","Cyanophora paradoxa","(p29344|rr1_spiol : 291.0) 30S ribosomal protein S1, chloroplast precursor (CS1) - Spinacia oleracea (Spinach) & (at5g30510 : 287.0) ribosomal protein S1 (RPS1); FUNCTIONS IN: RNA binding; LOCATED IN: thylakoid, chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding proteins superfamily (TAIR:AT1G71720.1); Has 27453 Blast hits to 18967 proteins in 2720 species: Archae - 77; Bacteria - 20681; Metazoa - 178; Fungi - 177; Plants - 343; Viruses - 0; Other Eukaryotes - 5997 (source: NCBI BLink). & (reliability: 574.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000293.22","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000334.11","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000378.15","No alias","Cyanophora paradoxa","(at5g26710 : 164.0) Glutamyl/glutaminyl-tRNA synthetase, class Ic; FUNCTIONS IN: glutamate-tRNA ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation, tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Glutamyl/glutaminyl-tRNA synthetase, class Ic, alpha-bundle domain (InterPro:IPR020061), Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain (InterPro:IPR020056), Glutamyl/glutaminyl-tRNA synthetase, class Ic, N-terminal (InterPro:IPR020060), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (InterPro:IPR011035), Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain (InterPro:IPR020058), Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutamyl-tRNA synthetase, class Ic, archaeal/eukaryotic cytosolic (InterPro:IPR004526), Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain (InterPro:IPR020059); BEST Arabidopsis thaliana protein match is: glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (TAIR:AT1G25350.1); Has 14411 Blast hits to 14402 proteins in 2977 species: Archae - 262; Bacteria - 9488; Metazoa - 657; Fungi - 449; Plants - 238; Viruses - 0; Other Eukaryotes - 3317 (source: NCBI BLink). & (reliability: 328.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000378.16","No alias","Cyanophora paradoxa","(at5g26710 : 432.0) Glutamyl/glutaminyl-tRNA synthetase, class Ic; FUNCTIONS IN: glutamate-tRNA ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation, tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Glutamyl/glutaminyl-tRNA synthetase, class Ic, alpha-bundle domain (InterPro:IPR020061), Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain (InterPro:IPR020056), Glutamyl/glutaminyl-tRNA synthetase, class Ic, N-terminal (InterPro:IPR020060), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (InterPro:IPR011035), Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain (InterPro:IPR020058), Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutamyl-tRNA synthetase, class Ic, archaeal/eukaryotic cytosolic (InterPro:IPR004526), Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain (InterPro:IPR020059); BEST Arabidopsis thaliana protein match is: glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (TAIR:AT1G25350.1); Has 14411 Blast hits to 14402 proteins in 2977 species: Archae - 262; Bacteria - 9488; Metazoa - 657; Fungi - 449; Plants - 238; Viruses - 0; Other Eukaryotes - 3317 (source: NCBI BLink). & (p52780|syq_luplu : 243.0) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA ligase) (GlnRS) - Lupinus luteus (European yellow lupin) & (reliability: 864.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000383.110","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000383.31","No alias","Cyanophora paradoxa","(at5g19760 : 227.0) Mitochondrial substrate carrier family protein; FUNCTIONS IN: oxidative phosphorylation uncoupler activity, binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: dicarboxylate carrier 2 (TAIR:AT4G24570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 454.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000388.37","No alias","Cyanophora paradoxa","(q9fpk7|ino1_maize : 511.0) Inositol-3-phosphate synthase (EC 5.5.1.4) (Myo-inositol-1-phosphate synthase) (MI-1-P synthase) (IPS) - Zea mays (Maize) & (at5g10170 : 499.0) myo-inositol-1-phosphate synthase isoform 3.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.; myo-inositol-1-phosphate synthase 3 (MIPS3); FUNCTIONS IN: binding, inositol-3-phosphate synthase activity, catalytic activity; INVOLVED IN: metabolic process, inositol biosynthetic process, phospholipid biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Myo-inositol-1-phosphate synthase (InterPro:IPR002587), Myo-inositol-1-phosphate synthase, GAPDH-like (InterPro:IPR013021), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: myo-inositol-1-phosphate synthase 2 (TAIR:AT2G22240.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 998.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000403.10","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000403.65","No alias","Cyanophora paradoxa","(at2g03690 : 138.0) Ubiquinone biosynthesis protein COQ4 homolog.; coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquinone biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Coenzyme Q biosynthesis Coq4 (InterPro:IPR007715); Has 675 Blast hits to 675 proteins in 251 species: Archae - 0; Bacteria - 141; Metazoa - 162; Fungi - 176; Plants - 60; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). & (reliability: 276.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000430.3","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000430.54","No alias","Cyanophora paradoxa","(at2g29690 : 403.0) Encode a functional anthranilate synthase protein. Expressed at a constitutive basal level. Expression was not induced by wounding nor bacterial pathogen infiltration. Involved in aromatic amino acid biosynthesis.; anthranilate synthase 2 (ASA2); FUNCTIONS IN: anthranilate synthase activity; INVOLVED IN: tryptophan biosynthetic process, aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast, anthranilate synthase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Anthranilate synthase component I, N-terminal (InterPro:IPR006805), Chorismate binding, C-terminal (InterPro:IPR015890), ADC synthase (InterPro:IPR005801), Anthranilate synthase component I (InterPro:IPR019999), Anthranilate synthase component I, PabB-like (InterPro:IPR005256); BEST Arabidopsis thaliana protein match is: anthranilate synthase alpha subunit 1 (TAIR:AT5G05730.1); Has 16475 Blast hits to 16472 proteins in 2614 species: Archae - 246; Bacteria - 11051; Metazoa - 5; Fungi - 314; Plants - 193; Viruses - 0; Other Eukaryotes - 4666 (source: NCBI BLink). & (reliability: 806.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000471.15","No alias","Cyanophora paradoxa","(at1g63050 : 163.0) MBOAT (membrane bound O-acyl transferase) family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Membrane bound O-acyl transferase, MBOAT (InterPro:IPR004299); BEST Arabidopsis thaliana protein match is: MBOAT (membrane bound O-acyl transferase) family protein (TAIR:AT1G12640.1); Has 1074 Blast hits to 1071 proteins in 250 species: Archae - 0; Bacteria - 147; Metazoa - 624; Fungi - 142; Plants - 47; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). & (reliability: 326.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000478.17","No alias","Cyanophora paradoxa","(at3g20870 : 99.8) ZIP metal ion transporter family; FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: metal ion transport, transmembrane transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: ZIP metal ion transporter family (TAIR:AT3G08650.2); Has 3662 Blast hits to 3630 proteins in 1201 species: Archae - 124; Bacteria - 2163; Metazoa - 678; Fungi - 116; Plants - 147; Viruses - 0; Other Eukaryotes - 434 (source: NCBI BLink). & (reliability: 199.6) &  (original description: no original description)","protein_coding"
"evm.model.tig00000480.48","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000601.8","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000655.64","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000711.67","No alias","Cyanophora paradoxa","(at4g13590 : 119.0) Uncharacterized protein family (UPF0016); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: Uncharacterized protein family (UPF0016) (TAIR:AT1G64150.1). & (reliability: 238.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000711.7","No alias","Cyanophora paradoxa","(at4g26300 : 403.0) embryo defective 1027 (emb1027); FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding; INVOLVED IN: arginyl-tRNA aminoacylation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), DALR anticodon binding (InterPro:IPR008909), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Arginyl-tRNA synthetase, class Ic, core (InterPro:IPR015945), Arginyl tRNA synthetase, class Ic, N-terminal (InterPro:IPR005148), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Arginyl-tRNA synthetase, class Ic (InterPro:IPR001278); BEST Arabidopsis thaliana protein match is: Arginyl-tRNA synthetase, class Ic (TAIR:AT1G66530.1); Has 9418 Blast hits to 9310 proteins in 2828 species: Archae - 263; Bacteria - 5535; Metazoa - 273; Fungi - 189; Plants - 85; Viruses - 3; Other Eukaryotes - 3070 (source: NCBI BLink). & (reliability: 806.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000718.40","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000767.8","No alias","Cyanophora paradoxa","(at4g08320 : 107.0) Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: protein phosphatase 5.2 (TAIR:AT2G42810.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 214.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000769.37","No alias","Cyanophora paradoxa","(at3g09600 : 109.0) Homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: LHY/CCA1-like 1 (TAIR:AT5G02840.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 202.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000806.36","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000821.9","No alias","Cyanophora paradoxa","(at1g67730 : 151.0) Encodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene.; beta-ketoacyl reductase 1 (KCR1); FUNCTIONS IN: oxidoreductase activity, ketoreductase activity, acetoacetyl-CoA reductase activity; INVOLVED IN: very long-chain fatty acid biosynthetic process, embryo development, cuticle development; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: beta-ketoacyl reductase 2 (TAIR:AT1G24470.1); Has 86831 Blast hits to 86679 proteins in 3373 species: Archae - 739; Bacteria - 59178; Metazoa - 5127; Fungi - 3946; Plants - 2216; Viruses - 0; Other Eukaryotes - 15625 (source: NCBI BLink). & (reliability: 302.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000829.19","No alias","Cyanophora paradoxa","(at3g06650 : 736.0) One of the two genes encoding subunit B of the trimeric enzyme ATP Citrate lyase; ATP-citrate lyase B-1 (ACLB-1); FUNCTIONS IN: ATP citrate synthase activity; INVOLVED IN: acetyl-CoA biosynthetic process; LOCATED IN: citrate lyase complex, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA synthetase, beta subunit, conserved site (InterPro:IPR017866), Citrate synthase-like, small alpha subdomain (InterPro:IPR016143), Succinyl-CoA ligase, alpha subunit (InterPro:IPR005810), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), NAD(P)-binding domain (InterPro:IPR016040), CoA-binding (InterPro:IPR003781), Citrate synthase-like, core (InterPro:IPR016141), ATP-citrate lyase/succinyl-CoA ligase, active site (InterPro:IPR017440), Citrate synthase-like (InterPro:IPR002020), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP citrate lyase subunit B 2 (TAIR:AT5G49460.1); Has 8069 Blast hits to 8065 proteins in 2074 species: Archae - 271; Bacteria - 4029; Metazoa - 557; Fungi - 289; Plants - 162; Viruses - 0; Other Eukaryotes - 2761 (source: NCBI BLink). & (q6zl94|suca_orysa : 93.6) Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase subunit alpha) (SCS-alpha) - Oryza sativa (Rice) & (reliability: 1472.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000829.4","No alias","Cyanophora paradoxa","(at1g60810 : 446.0) One of the three genes encoding subunit A of the trimeric enzyme ATP Citrate lyase; ATP-citrate lyase A-2 (ACLA-2); CONTAINS InterPro DOMAIN/s: ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-1 (TAIR:AT1G10670.4); Has 5556 Blast hits to 5555 proteins in 1577 species: Archae - 133; Bacteria - 3078; Metazoa - 348; Fungi - 198; Plants - 97; Viruses - 0; Other Eukaryotes - 1702 (source: NCBI BLink). & (reliability: 892.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000842.1","No alias","Cyanophora paradoxa","(at1g08540 : 210.0) Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.; RNApolymerase sigma subunit 2 (SIG2); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 region 1.2 (InterPro:IPR009042), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma-subunit F (TAIR:AT2G36990.1); Has 24116 Blast hits to 24030 proteins in 2811 species: Archae - 0; Bacteria - 17119; Metazoa - 4; Fungi - 2; Plants - 243; Viruses - 12; Other Eukaryotes - 6736 (source: NCBI BLink). & (reliability: 420.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000842.11","No alias","Cyanophora paradoxa","(at1g17220 : 527.0) Encodes a chloroplast localized protein with similarity to translation initiation factor 2. Can complement loss of INFB in E.coli suggesting FUG1 does function as a translation initiation factor in vivo. Identified as a suppressor of the leaf variegation mutant var2-6. Suppression is only seen in hypomorphs as complete loss of function alleles are embryo lethal.; fu-gaeri1 (FUG1); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF-2, N-terminal (InterPro:IPR006847), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Initiation factor 2 (InterPro:IPR000178), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation initiation factor 2, small GTP-binding protein (TAIR:AT4G11160.1); Has 64472 Blast hits to 64325 proteins in 4737 species: Archae - 1215; Bacteria - 42273; Metazoa - 2198; Fungi - 2344; Plants - 1110; Viruses - 4; Other Eukaryotes - 15328 (source: NCBI BLink). & (p57997|if2c_phavu : 519.0) Translation initiation factor IF-2, chloroplast precursor (PvIF2cp) - Phaseolus vulgaris (Kidney bean) (French bean) & (reliability: 1054.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000882.12","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000980.24","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001003.35","No alias","Cyanophora paradoxa","(at2g20060 : 100.0) Ribosomal protein L4/L1 family; FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4 (InterPro:IPR015498), Ribosomal protein L4/L1e, bacterial-type (InterPro:IPR013005), Ribosomal protein L4/L1e (InterPro:IPR002136); BEST Arabidopsis thaliana protein match is: ribosomal protein L4 (TAIR:AT1G07320.4); Has 8236 Blast hits to 8236 proteins in 2694 species: Archae - 70; Bacteria - 5573; Metazoa - 121; Fungi - 129; Plants - 100; Viruses - 0; Other Eukaryotes - 2243 (source: NCBI BLink). & (o80361|rk4_tobac : 92.8) 50S ribosomal protein L4, chloroplast precursor (CL4) (R-protein L4) - Nicotiana tabacum (Common tobacco) & (reliability: 200.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001029.18","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001030.27","No alias","Cyanophora paradoxa","(at5g66190 : 347.0) Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase.  It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid.  The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme.  AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.; LEAF FNR 1 (ATLFNR1); FUNCTIONS IN: oxidoreductase activity, electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, poly(U) RNA binding, NADPH dehydrogenase activity, electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity; INVOLVED IN: oxidation reduction, photosynthetic electron transport chain, defense response to bacterium; LOCATED IN: thylakoid, chloroplast thylakoid membrane, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Ferredoxin--NADP reductase (InterPro:IPR012146), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: ferredoxin-NADP(+)-oxidoreductase 2 (TAIR:AT1G20020.3); Has 7407 Blast hits to 7407 proteins in 1806 species: Archae - 24; Bacteria - 3962; Metazoa - 817; Fungi - 811; Plants - 610; Viruses - 0; Other Eukaryotes - 1183 (source: NCBI BLink). & (p41343|fenr_mescr : 338.0) Ferredoxin--NADP reductase, chloroplast precursor (EC 1.18.1.2) (FNR) - Mesembryanthemum crystallinum (Common ice plant) & (reliability: 694.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001094.6","No alias","Cyanophora paradoxa","(at1g11870 : 422.0) Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.; Seryl-tRNA synthetase (SRS); FUNCTIONS IN: serine-tRNA ligase activity; INVOLVED IN: chloroplast organization, mitochondrion organization, seryl-tRNA aminoacylation, tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Seryl-tRNA synthetase, class IIa, N-terminal (InterPro:IPR015866), Seryl-tRNA synthetase, class IIa (InterPro:IPR002317), Ubiquitin supergroup (InterPro:IPR019955), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Seryl-tRNA synthetase, class IIa, C-terminal (InterPro:IPR018156); BEST Arabidopsis thaliana protein match is: seryl-tRNA synthetase / serine--tRNA ligase (TAIR:AT5G27470.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (o81983|sys_helan : 188.0) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) - Helianthus annuus (Common sunflower) & (reliability: 844.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001095.14","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001107.20","No alias","Cyanophora paradoxa","(q42694|ruba_chlre : 473.0) RuBisCO large subunit-binding protein subunit alpha, chloroplast precursor (60 kDa chaperonin subunit alpha) (CPN-60 alpha) - Chlamydomonas reinhardtii & (at2g28000 : 461.0) Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding.  Mutants display aberrant chloroplast and embryo development.; chaperonin-60alpha (CPN60A); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, chloroplast organization, embryo development; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT5G18820.1); Has 33896 Blast hits to 33887 proteins in 8716 species: Archae - 792; Bacteria - 21835; Metazoa - 1656; Fungi - 1573; Plants - 797; Viruses - 2; Other Eukaryotes - 7241 (source: NCBI BLink). & (reliability: 922.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001110.7","No alias","Cyanophora paradoxa","(at1g15730 : 253.0) Cobalamin biosynthesis CobW-like protein; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 17 (TAIR:AT1G80480.1); Has 16369 Blast hits to 11834 proteins in 1861 species: Archae - 128; Bacteria - 8189; Metazoa - 1729; Fungi - 553; Plants - 409; Viruses - 6; Other Eukaryotes - 5355 (source: NCBI BLink). & (reliability: 490.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001127.32","No alias","Cyanophora paradoxa","(at5g50850 : 88.2) MACCI-BOU (MAB1); FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity, catalytic activity; INVOLVED IN: defense response to bacterium; LOCATED IN: mitochondrion, nucleolus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: pyruvate dehydrogenase E1 beta (TAIR:AT1G30120.1); Has 17839 Blast hits to 17830 proteins in 2804 species: Archae - 215; Bacteria - 11375; Metazoa - 619; Fungi - 227; Plants - 405; Viruses - 0; Other Eukaryotes - 4998 (source: NCBI BLink). & (reliability: 176.4) &  (original description: no original description)","protein_coding"
"evm.model.tig00001130.5","No alias","Cyanophora paradoxa","(at1g14610 : 789.0) Required for proper proliferation of basal cells.; TWIN 2 (TWN2); FUNCTIONS IN: valine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Valyl-tRNA synthetase, class Ia (InterPro:IPR002303), Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Valyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR019754); BEST Arabidopsis thaliana protein match is: ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (TAIR:AT5G16715.1); Has 39194 Blast hits to 36732 proteins in 3122 species: Archae - 839; Bacteria - 19755; Metazoa - 1534; Fungi - 892; Plants - 369; Viruses - 3; Other Eukaryotes - 15802 (source: NCBI BLink). & (reliability: 1578.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001164.1","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001371.16","No alias","Cyanophora paradoxa","(at2g33840 : 494.0) Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; FUNCTIONS IN: tyrosine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: translation, tRNA aminoacylation for protein translation, tyrosyl-tRNA aminoacylation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tyrosine tRNA ligase, archaeal/eukaryotic (InterPro:IPR016485), Tyrosyl-tRNA synthetase, class Ib, archaeal/eukaryotic cytosolic (InterPro:IPR015624), Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (InterPro:IPR002307), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT1G28350.1); Has 5443 Blast hits to 5419 proteins in 1791 species: Archae - 389; Bacteria - 3121; Metazoa - 323; Fungi - 286; Plants - 124; Viruses - 5; Other Eukaryotes - 1195 (source: NCBI BLink). & (reliability: 988.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001408.9","No alias","Cyanophora paradoxa","(at5g17770 : 158.0) Encodes NADH:cytochrome (Cyt) b5 reductase that displayed strict specificity to NADH for the reduction of a recombinant Cyt b5 (AtB5-A), whereas no Cyt b5 reduction was observed when NADPH was used as the electron donor.; NADH:cytochrome B5 reductase 1 (CBR); FUNCTIONS IN: cytochrome-b5 reductase activity; INVOLVED IN: electron transport chain; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709), NADH:cytochrome b5 reductase (CBR) (InterPro:IPR001834); BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase (TAIR:AT5G20080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p39866|nia2_phavu : 138.0) Nitrate reductase [NADH] 2 (EC 1.7.1.1) (NR-2) - Phaseolus vulgaris (Kidney bean) (French bean) & (reliability: 316.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001428.12","No alias","Cyanophora paradoxa","(at1g75460 : 119.0) ATP-dependent protease La (LON) domain protein; FUNCTIONS IN: ATP-dependent peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S16, lon N-terminal (InterPro:IPR003111); BEST Arabidopsis thaliana protein match is: ATP-dependent protease La (LON) domain protein (TAIR:AT1G19740.1); Has 3715 Blast hits to 3715 proteins in 882 species: Archae - 0; Bacteria - 1742; Metazoa - 186; Fungi - 45; Plants - 112; Viruses - 0; Other Eukaryotes - 1630 (source: NCBI BLink). & (reliability: 238.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001471.12","No alias","Cyanophora paradoxa","(at1g51560 : 114.0) Pyridoxamine 5'-phosphate oxidase family protein; FUNCTIONS IN: FMN binding; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: FMN-binding split barrel (InterPro:IPR012349), Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain (InterPro:IPR011576), FMN-binding split barrel, related (InterPro:IPR009002); BEST Arabidopsis thaliana protein match is: Pyridoxamine 5'-phosphate oxidase family protein (TAIR:AT3G21140.1); Has 633 Blast hits to 633 proteins in 219 species: Archae - 0; Bacteria - 353; Metazoa - 24; Fungi - 0; Plants - 140; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink). & (reliability: 228.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001604.1","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001668.1","No alias","Cyanophora paradoxa","(at1g22660 : 342.0) Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: tRNA adenylyltransferase activity, RNA binding, nucleotidyltransferase activity; INVOLVED IN: tRNA processing, RNA processing; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT2G17580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 684.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020516.18","No alias","Cyanophora paradoxa","(at5g13510 : 86.7) Ribosomal protein L10 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: Ribosomal protein L10 family protein (TAIR:AT3G12370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o80362|rk10_tobac : 85.5) 50S ribosomal protein L10, chloroplast precursor (CL10) - Nicotiana tabacum (Common tobacco) & (reliability: 173.4) &  (original description: no original description)","protein_coding"
"evm.model.tig00020537.19","No alias","Cyanophora paradoxa","(q40545|kpya_tobac : 207.0) Pyruvate kinase isozyme A, chloroplast precursor (EC 2.7.1.40) - Nicotiana tabacum (Common tobacco) & (at3g22960 : 206.0) encodes a chloroplast pyruvate kinase alpha subunit. Important for seed oil biosynthesis. Ubiquitously expressed, with significantly increased expression in maturing seeds.; PKP-ALPHA; FUNCTIONS IN: pyruvate kinase activity; INVOLVED IN: response to cadmium ion, glycolysis, lipid metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: plastidic pyruvate kinase beta subunit 1 (TAIR:AT5G52920.1); Has 10289 Blast hits to 10239 proteins in 2715 species: Archae - 167; Bacteria - 6049; Metazoa - 538; Fungi - 221; Plants - 529; Viruses - 0; Other Eukaryotes - 2785 (source: NCBI BLink). & (reliability: 412.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020553.109","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020553.76","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020554.18","No alias","Cyanophora paradoxa","(at5g13630 : 1562.0) Encodes magnesium chelatase involved in plastid-to-nucleus signal transduction.; GENOMES UNCOUPLED 5 (GUN5); FUNCTIONS IN: magnesium chelatase activity; INVOLVED IN: chlorophyll biosynthetic process, biosynthetic process; LOCATED IN: mitochondrion, magnesium chelatase complex, chloroplast, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CobN/magnesium chelatase (InterPro:IPR003672), Magnesium-chelatase, subunit H (InterPro:IPR011771); Has 3665 Blast hits to 3123 proteins in 644 species: Archae - 281; Bacteria - 1903; Metazoa - 0; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 1389 (source: NCBI BLink). & (reliability: 3124.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020554.34","No alias","Cyanophora paradoxa","(p49079|akh1_maize : 521.0) Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplast precursor (AK-HD 1) (AK-HSDH 1) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] - Zea mays (Maize) & (at4g19710 : 517.0) Encodes a bifunctional aspartate kinase/homoserine dehydrogenase.  These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine.; aspartate kinase-homoserine dehydrogenase ii (AK-HSDH II); FUNCTIONS IN: homoserine dehydrogenase activity, aspartate kinase activity; INVOLVED IN: aspartate family amino acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Homoserine dehydrogenase, catalytic (InterPro:IPR001342), Amino acid-binding ACT (InterPro:IPR002912), Aspartate/homoserine dehydrogenase, NAD-binding (InterPro:IPR005106), Aspartate kinase, conserved site (InterPro:IPR018042), NAD(P)-binding domain (InterPro:IPR016040), Aspartate kinase domain (InterPro:IPR001341), Bifunctional aspartokinase/homoserine dehydrogenase I (InterPro:IPR011147), Homoserine dehydrogenase, conserved site (InterPro:IPR019811); BEST Arabidopsis thaliana protein match is: aspartate kinase-homoserine dehydrogenase i (TAIR:AT1G31230.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1022.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020554.35","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020554.66","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020563.161","No alias","Cyanophora paradoxa","(at5g60600 : 270.0) Encodes a chloroplast-localized  hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP).  The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP<sup>+</sup> reductase.; 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (HDS); FUNCTIONS IN: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 4 iron, 4 sulfur cluster binding; INVOLVED IN: response to light stimulus, isoprenoid biosynthetic process, isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, response to bacterium, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dihydropteroate synthase-like (InterPro:IPR011005), 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical (InterPro:IPR017178), 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type (InterPro:IPR004588); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 540.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020614.28","No alias","Cyanophora paradoxa","(at2g31060 : 269.0) elongation factor family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein TypA (InterPro:IPR006298), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor family protein (TAIR:AT5G13650.2). & (reliability: 538.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020614.63","No alias","Cyanophora paradoxa","(at5g65780 : 216.0) encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant; ATBCAT-5; FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: little nuclei4 (TAIR:AT5G65770.3). & (reliability: 432.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020675.18","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020675.84","No alias","Cyanophora paradoxa","(at4g33650 : 142.0) Encodes a protein with high sequence similarity to the dynamin superfamily.  Among those members ADL2 was most closely related to Dnm1p of yeast and likely a member of the Vps1p subfamily. Widely expressed in various tissues with highest expression in flower tissues. Localizes to the chloroplast, mitochondrion and peroxisome. Involved in peroxisome and mitochondria fission in combination with DRP3B.; dynamin-related protein 3A (DRP3A); CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), GTPase effector domain, GED (InterPro:IPR020850), Dynamin, GTPase region, conserved site (InterPro:IPR019762), Dynamin, GTPase domain (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: dynamin related protein (TAIR:AT2G14120.1). & (reliability: 284.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020703.23","No alias","Cyanophora paradoxa","(at2g31170 : 284.0) SYCO ARATH; FUNCTIONS IN: cysteine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: cysteinyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cysteinyl-tRNA synthetase, class Ia (InterPro:IPR002308), Cysteinyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015803), Cysteinyl-tRNA synthetase, class Ia, DALR (InterPro:IPR015273), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Cysteinyl-tRNA synthetase, class Ia, C-terminal (InterPro:IPR015804); BEST Arabidopsis thaliana protein match is: Cysteinyl-tRNA synthetase, class Ia family protein (TAIR:AT5G38830.1); Has 10676 Blast hits to 10676 proteins in 2860 species: Archae - 252; Bacteria - 6117; Metazoa - 332; Fungi - 154; Plants - 139; Viruses - 3; Other Eukaryotes - 3679 (source: NCBI BLink). & (reliability: 568.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020746.7","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020746.8","No alias","Cyanophora paradoxa","(at4g18240 : 154.0) starch synthase 4 (SS4); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: starch metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: starch synthase 3 (TAIR:AT1G11720.1); Has 55451 Blast hits to 38117 proteins in 4040 species: Archae - 1014; Bacteria - 10985; Metazoa - 22418; Fungi - 3875; Plants - 6050; Viruses - 242; Other Eukaryotes - 10867 (source: NCBI BLink). & (q43846|ssy3_soltu : 119.0) Soluble starch synthase 3, chloroplast precursor (EC 2.4.1.21) (SS III) (Soluble starch synthase III) - Solanum tuberosum (Potato) & (reliability: 308.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020816.124","No alias","Cyanophora paradoxa","(at4g21470 : 172.0) Bifunctional enzyme that catalyzes hydrolysis of FMN to riboflavin, and phosphorylation of riboflavin to FMN.; riboflavin kinase/FMN hydrolase (FMN/FHY); FUNCTIONS IN: riboflavin kinase activity, FMN adenylyltransferase activity; INVOLVED IN: riboflavin biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Haloacid dehydrogenase/epoxide hydrolase (InterPro:IPR005833), Riboflavin kinase (InterPro:IPR015865), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G57440.1); Has 19964 Blast hits to 19956 proteins in 2653 species: Archae - 146; Bacteria - 15844; Metazoa - 398; Fungi - 526; Plants - 433; Viruses - 3; Other Eukaryotes - 2614 (source: NCBI BLink). & (reliability: 344.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020816.66","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020816.89","No alias","Cyanophora paradoxa","(at1g08540 : 224.0) Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.; RNApolymerase sigma subunit 2 (SIG2); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 region 1.2 (InterPro:IPR009042), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma-subunit F (TAIR:AT2G36990.1); Has 24116 Blast hits to 24030 proteins in 2811 species: Archae - 0; Bacteria - 17119; Metazoa - 4; Fungi - 2; Plants - 243; Viruses - 12; Other Eukaryotes - 6736 (source: NCBI BLink). & (reliability: 448.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020830.3","No alias","Cyanophora paradoxa","(at2g47840 : 82.0) Uncharacterised conserved protein ycf60; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein ycf60 (InterPro:IPR019109); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G55710.1); Has 358 Blast hits to 358 proteins in 92 species: Archae - 0; Bacteria - 125; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink). & (reliability: 164.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020848.90","No alias","Cyanophora paradoxa","(p93431|rca_orysa : 98.6) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) - Oryza sativa (Rice) & (at2g39730 : 96.7) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.; rubisco activase (RCA); FUNCTIONS IN: enzyme regulator activity, ADP binding, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to cold, response to light stimulus, defense response to bacterium; LOCATED IN: in 10 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73110.1); Has 2322 Blast hits to 2274 proteins in 510 species: Archae - 328; Bacteria - 451; Metazoa - 248; Fungi - 425; Plants - 405; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink). & (reliability: 193.4) &  (original description: no original description)","protein_coding"
"evm.model.tig00020848.91","No alias","Cyanophora paradoxa","(p10871|rca_spiol : 291.0) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) - Spinacia oleracea (Spinach) & (at2g39730 : 285.0) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.; rubisco activase (RCA); FUNCTIONS IN: enzyme regulator activity, ADP binding, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to cold, response to light stimulus, defense response to bacterium; LOCATED IN: in 10 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73110.1); Has 2322 Blast hits to 2274 proteins in 510 species: Archae - 328; Bacteria - 451; Metazoa - 248; Fungi - 425; Plants - 405; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink). & (reliability: 570.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020904.113","No alias","Cyanophora paradoxa","(at1g60500 : 220.0) Dynamin related protein 4C (DRP4C); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase domain (InterPro:IPR001401), GTPase effector domain, GED (InterPro:IPR020850), Dynamin central region (InterPro:IPR000375), Interferon-induced Mx protein (InterPro:IPR015577); BEST Arabidopsis thaliana protein match is: Dynamin related protein 4A (TAIR:AT1G60530.1); Has 2653 Blast hits to 2628 proteins in 285 species: Archae - 0; Bacteria - 0; Metazoa - 1034; Fungi - 820; Plants - 506; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink). & (reliability: 440.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020904.150","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020904.57","No alias","Cyanophora paradoxa","(at4g10320 : 975.0) tRNA synthetase class I (I, L, M and V) family protein; FUNCTIONS IN: isoleucine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, zinc ion binding, ATP binding; INVOLVED IN: response to cadmium ion, tRNA aminoacylation for protein translation; LOCATED IN: cytosol; EXPRESSED IN: male gametophyte, guard cell, epidermis, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Isoleucyl-tRNA synthetase (InterPro:IPR018353), Isoleucyl-tRNA synthetase, class Ia (InterPro:IPR002301), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Isoleucyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015905), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (I, L, M and V) family protein (TAIR:AT5G49030.3); Has 38868 Blast hits to 32849 proteins in 3074 species: Archae - 1055; Bacteria - 22228; Metazoa - 780; Fungi - 735; Plants - 304; Viruses - 0; Other Eukaryotes - 13766 (source: NCBI BLink). & (reliability: 1950.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020909.38","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020909.39","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020911.38","No alias","Cyanophora paradoxa","(at1g78660 : 179.0) The Arabidopsis protein AtGGH1 is a gamma-glutamyl hydrolase cleaving pentaglutamates to yield di- and triglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole.; gamma-glutamyl hydrolase 1 (GGH1); CONTAINS InterPro DOMAIN/s: Peptidase C26, gamma-glutamyl hydrolase (InterPro:IPR015527), Peptidase C26 (InterPro:IPR011697); BEST Arabidopsis thaliana protein match is: gamma-glutamyl hydrolase 2 (TAIR:AT1G78680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p93164|ggh_soybn : 157.0) Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH) - Glycine max (Soybean) & (reliability: 358.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020911.46","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020934.40","No alias","Cyanophora paradoxa","(at3g25920 : 151.0) encodes a plastid ribosomal protein CL15, a constituent of the large subunit of the ribosomal complex; ribosomal protein L15 (RPL15); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: plastid large ribosomal subunit, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131), Ribosomal protein L15, bacterial-type (InterPro:IPR005749), Ribosomal protein L15, conserved site (InterPro:IPR001196); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18e/L15 superfamily protein (TAIR:AT5G64670.1); Has 7744 Blast hits to 7744 proteins in 2658 species: Archae - 15; Bacteria - 5386; Metazoa - 72; Fungi - 86; Plants - 90; Viruses - 0; Other Eukaryotes - 2095 (source: NCBI BLink). & (p31165|rk15_pea : 148.0) 50S ribosomal protein L15, chloroplast precursor (CL15) (Fragment) - Pisum sativum (Garden pea) & (reliability: 302.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020941.40","No alias","Cyanophora paradoxa","(at5g12470 : 182.0) Protein of unknown function (DUF3411); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF399 and DUF3411) (TAIR:AT2G40400.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 364.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020961.104","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020965.10","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021073.64","No alias","Cyanophora paradoxa","(at4g32180 : 176.0) Encodes a protein with pantothenate kinase activity.; pantothenate kinase 2 (PANK2); FUNCTIONS IN: protein binding, pantothenate kinase activity; INVOLVED IN: coenzyme A biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Fumble (InterPro:IPR011602), Domain of unknown function DUF89 (InterPro:IPR002791), Pantothenate kinase, acetyl-CoA regulated, two-domain type (InterPro:IPR015844), Eukaryotic pantothenate kinase (InterPro:IPR004567); BEST Arabidopsis thaliana protein match is: pantothenate kinase 1 (TAIR:AT1G60440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 352.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021098.10","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021098.9","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021108.19","No alias","Cyanophora paradoxa","(at1g04600 : 533.0) member of Myosin-like proteins; myosin XI A (XIA); FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Prefoldin (InterPro:IPR009053), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin XI D (TAIR:AT2G33240.1); Has 140144 Blast hits to 79260 proteins in 3527 species: Archae - 2295; Bacteria - 25176; Metazoa - 58445; Fungi - 12073; Plants - 6566; Viruses - 744; Other Eukaryotes - 34845 (source: NCBI BLink). & (reliability: 978.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021108.24","No alias","Cyanophora paradoxa","(at2g31900 : 648.0) Encodes an novel myosin isoform.; myosin-like protein XIF (XIF); CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT5G20490.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1296.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021122.14","No alias","Cyanophora paradoxa","(at2g34970 : 275.0) Trimeric LpxA-like enzyme; FUNCTIONS IN: binding, transferase activity, translation initiation factor activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process, regulation of translational initiation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Armadillo-type fold (InterPro:IPR016024), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzyme (TAIR:AT4G18300.1); Has 8121 Blast hits to 7961 proteins in 1548 species: Archae - 574; Bacteria - 3735; Metazoa - 1296; Fungi - 469; Plants - 387; Viruses - 0; Other Eukaryotes - 1660 (source: NCBI BLink). & (reliability: 550.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021123.35","No alias","Cyanophora paradoxa","(q9sbn4|pgkh_volca : 421.0) Phosphoglycerate kinase, chloroplast precursor (EC 2.7.2.3) - Volvox carteri & (at3g12780 : 404.0) nuclear phosphoglycerate kinase (PGK1); phosphoglycerate kinase 1 (PGK1); FUNCTIONS IN: phosphoglycerate kinase activity; INVOLVED IN: response to cadmium ion, response to cold, glycolysis, peptidyl-cysteine S-nitrosylation; LOCATED IN: in 11 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoglycerate kinase, N-terminal (InterPro:IPR015824), Phosphoglycerate kinase (InterPro:IPR001576), Phosphoglycerate kinase, C-terminal (InterPro:IPR015901), Phosphoglycerate kinase, conserved site (InterPro:IPR015911); BEST Arabidopsis thaliana protein match is: Phosphoglycerate kinase family protein (TAIR:AT1G56190.1); Has 10843 Blast hits to 10817 proteins in 3010 species: Archae - 254; Bacteria - 5217; Metazoa - 451; Fungi - 193; Plants - 515; Viruses - 0; Other Eukaryotes - 4213 (source: NCBI BLink). & (reliability: 808.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021127.77","No alias","Cyanophora paradoxa","(q6k669|ampl2_orysa : 284.0) Leucine aminopeptidase 2, chloroplast precursor (EC 3.4.11.1) (LAP 2) (Leucyl aminopeptidase 2) (Proline aminopeptidase 2) (EC 3.4.11.5) (Prolyl aminopeptidase 2) - Oryza sativa (Rice) & (at2g24200 : 270.0) Cytosol aminopeptidase family protein; FUNCTIONS IN: manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M17, leucyl aminopeptidase, C-terminal (InterPro:IPR000819), Peptidase M17, leucyl aminopeptidase, N-terminal (InterPro:IPR008283), Peptidase M17, leucyl aminopeptidase (InterPro:IPR011356); BEST Arabidopsis thaliana protein match is: Cytosol aminopeptidase family protein (TAIR:AT4G30920.1). & (reliability: 540.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021135.22","No alias","Cyanophora paradoxa","(p36183|enpl_horvu : 263.0) Endoplasmin homolog precursor (GRP94 homolog) - Hordeum vulgare (Barley) & (at5g56010 : 249.0) A member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl. Overexpression reduced tolerance to heat and conferred higher tolerance to calcium.; heat shock protein 81-3 (HSP81-3); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, response to heat, cellular response to calcium ion; LOCATED IN: cytosol, nucleolus, plasma membrane, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Chaperone protein htpG (InterPro:IPR001404), Heat shock protein Hsp90, conserved site (InterPro:IPR019805), Heat shock protein Hsp90, C-terminal (InterPro:IPR020576), Heat shock protein Hsp90, N-terminal (InterPro:IPR020575), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: heat shock protein 81-2 (TAIR:AT5G56030.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 498.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021257.14","No alias","Cyanophora paradoxa","(at5g43850 : 101.0) ARD4; FUNCTIONS IN: acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding; INVOLVED IN: L-methionine salvage from methylthioadenosine, oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acireductone dioxygenase, ARD (InterPro:IPR004313), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT4G14710.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q58fk4|ard2_orysa : 98.2) 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 (EC 1.13.-.-) (Aci-reductone dioxygenase 2) (Submergence-induced protein 2A) - Oryza sativa (Rice) & (reliability: 200.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021314.8","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021319.59","No alias","Cyanophora paradoxa","(at3g14940 : 331.0) Encodes a cytosolic phosphoenolpyruvate carboxylase (PEPC) that has activity when expressed in E.coli. Its mRNA is most abundantly expressed in roots and siliques. PPC3 belongs to the plant-type PEPC family. It can form an enzymatically active complex with a castor bean ortholog of PPC4, which encodes a bacterial-type PEPC.; phosphoenolpyruvate carboxylase 3 (PPC3); FUNCTIONS IN: phosphoenolpyruvate carboxylase activity; INVOLVED IN: response to salt stress, tricarboxylic acid cycle; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Phosphoenolpyruvate carboxylase, active site (InterPro:IPR018129), Phosphoenolpyruvate carboxylase (InterPro:IPR001449), Phosphoenolpyruvate carboxylase, C-terminal region (InterPro:IPR021135); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxylase 1 (TAIR:AT1G53310.3); Has 6864 Blast hits to 6805 proteins in 1910 species: Archae - 27; Bacteria - 2657; Metazoa - 5; Fungi - 0; Plants - 1758; Viruses - 0; Other Eukaryotes - 2417 (source: NCBI BLink). & (p81831|capp1_chlre : 327.0) Phosphoenolpyruvate carboxylase 1 (EC 4.1.1.31) (PEP carboxylase 1) (PEPCase 1) (PEPC 1) - Chlamydomonas reinhardtii & (reliability: 662.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021348.92","No alias","Cyanophora paradoxa","(at1g30580 : 453.0) GTP binding; FUNCTIONS IN: GTP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF933 (InterPro:IPR013029), TGS-like (InterPro:IPR012676), GTP1/OBG (InterPro:IPR006073), Conserved hypothetical protein CHP00092 (InterPro:IPR004396), GTP-binding protein, HSR1-related (InterPro:IPR002917), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: GTP-binding protein-related (TAIR:AT1G56050.1); Has 19150 Blast hits to 19146 proteins in 3028 species: Archae - 362; Bacteria - 11244; Metazoa - 716; Fungi - 612; Plants - 292; Viruses - 0; Other Eukaryotes - 5924 (source: NCBI BLink). & (reliability: 906.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021352.21","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021365.2","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021464.52","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021464.56","No alias","Cyanophora paradoxa","(at1g72960 : 154.0) Root hair defective 3 GTP-binding protein (RHD3); CONTAINS InterPro DOMAIN/s: Root hair defective 3 GTP-binding (InterPro:IPR008803); BEST Arabidopsis thaliana protein match is: Root hair defective 3 GTP-binding protein (RHD3) (TAIR:AT3G13870.1); Has 479 Blast hits to 469 proteins in 183 species: Archae - 0; Bacteria - 2; Metazoa - 24; Fungi - 185; Plants - 127; Viruses - 0; Other Eukaryotes - 141 (source: NCBI BLink). & (reliability: 308.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021464.7","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021494.16","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021517.10","No alias","Cyanophora paradoxa","(at4g19210 : 820.0) member of RLI subfamily; RNAse l inhibitor protein 2 (RLI2); FUNCTIONS IN: transporter activity; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), 4Fe-4S binding domain (InterPro:IPR001450), ATPase, AAA+ type, core (InterPro:IPR003593), 4Fe-4S ferredoxin, iron-sulpur binding domain (InterPro:IPR017896), 4Fe-4S ferredoxin, iron-sulphur binding, conserved site (InterPro:IPR017900), RNase L inhibitor RLI, possible metal-binding domain (InterPro:IPR007209), ABC transporter, ABCE (InterPro:IPR013283), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: RNAse l inhibitor protein 1 (TAIR:AT3G13640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1640.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021525.26","No alias","Cyanophora paradoxa","(q6k669|ampl2_orysa : 139.0) Leucine aminopeptidase 2, chloroplast precursor (EC 3.4.11.1) (LAP 2) (Leucyl aminopeptidase 2) (Proline aminopeptidase 2) (EC 3.4.11.5) (Prolyl aminopeptidase 2) - Oryza sativa (Rice) & (at2g24200 : 136.0) Cytosol aminopeptidase family protein; FUNCTIONS IN: manganese ion binding, metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M17, leucyl aminopeptidase, C-terminal (InterPro:IPR000819), Peptidase M17, leucyl aminopeptidase, N-terminal (InterPro:IPR008283), Peptidase M17, leucyl aminopeptidase (InterPro:IPR011356); BEST Arabidopsis thaliana protein match is: Cytosol aminopeptidase family protein (TAIR:AT4G30920.1). & (reliability: 272.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021537.23","No alias","Cyanophora paradoxa","(at5g26830 : 698.0) Encodes a dual-targeted threonyl-tRNA synthetase found in both the chloroplast and mitochondrion.; Threonyl-tRNA synthetase; FUNCTIONS IN: ligase activity, forming aminoacyl-tRNA and related compounds, threonine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: threonyl-tRNA aminoacylation, tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, cell wall, chloroplast, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Threonyl-tRNA synthetase, class IIa (InterPro:IPR002320), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Threonyl/alanyl tRNA synthetase, SAD (InterPro:IPR012947), TGS-like (InterPro:IPR012676), TGS (InterPro:IPR004095), Anticodon-binding (InterPro:IPR004154), Threonyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR018158); BEST Arabidopsis thaliana protein match is: threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (TAIR:AT2G04842.1); Has 19313 Blast hits to 19116 proteins in 2937 species: Archae - 413; Bacteria - 11477; Metazoa - 486; Fungi - 321; Plants - 109; Viruses - 0; Other Eukaryotes - 6507 (source: NCBI BLink). & (reliability: 1396.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021612.40","No alias","Cyanophora paradoxa","(at5g54310 : 154.0) A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.  Regulates membrane trafficking and organ separation.; ARF-GAP domain 5 (AGD5); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: floral organ abscission, activation of ARF GTPase activity; LOCATED IN: cytosol, trans-Golgi network, endosome, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 15 (TAIR:AT3G17660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 308.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00022075.72","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"Mp1g02770.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp1g04530.1","No alias","Marchantia polymorpha","protein kinase (C-Lectin)","protein_coding"
"Mp1g04550.1","No alias","Marchantia polymorpha","component NF-YC of NF-Y transcription factor complex","protein_coding"
"Mp1g06130.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp1g06330.1","No alias","Marchantia polymorpha","pyridoxal kinase. pyridoxal kinase (SOS4)","protein_coding"
"Mp1g06870.1","No alias","Marchantia polymorpha","Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana (sp|q9sz52|pp344_arath : 281.0)","protein_coding"
"Mp1g09280.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp1g09830.1","No alias","Marchantia polymorpha","serine hydroxymethyltransferase. serine hydroxymethyltransferase","protein_coding"
"Mp1g11660.1","No alias","Marchantia polymorpha","transcription factor (WOX)","protein_coding"
"Mp1g12990.1","No alias","Marchantia polymorpha","component Tom20 of outer mitochondrion membrane TOM translocation system","protein_coding"
"Mp1g14820.1","No alias","Marchantia polymorpha","NXD1 neoxanthin biosynthesis cofactor. NXD1 neoxanthin biosynthesis cofactor","protein_coding"
"Mp1g15620.1","No alias","Marchantia polymorpha","miRNA nuclease (SDN1)","protein_coding"
"Mp1g16120.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp1g16140.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp1g17440.1","No alias","Marchantia polymorpha","RNA editing factor (WTG1)","protein_coding"
"Mp1g18040.1","No alias","Marchantia polymorpha","F-box protein At1g67340 OS=Arabidopsis thaliana (sp|q9fyf9|fb76_arath : 313.0)","protein_coding"
"Mp1g20190.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp1g20310.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp1g22170.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp1g25150.1","No alias","Marchantia polymorpha","primase component POLA4 of DNA polymerase alpha complex","protein_coding"
"Mp1g26750.1","No alias","Marchantia polymorpha","Pentatricopeptide repeat-containing protein At3g42630 OS=Arabidopsis thaliana (sp|q9m2a1|pp263_arath : 241.0)","protein_coding"
"Mp1g27330.1","No alias","Marchantia polymorpha","Chromophore lyase CRL, chloroplastic OS=Arabidopsis thaliana (sp|q9fi46|crl_arath : 348.0)","protein_coding"
"Mp1g29330.1","No alias","Marchantia polymorpha","auxin transporter (AUX/LAX)","protein_coding"
"Mp2g00450.1","No alias","Marchantia polymorpha","uracil repair DNA glycosylase (UNG)","protein_coding"
"Mp2g01020.1","No alias","Marchantia polymorpha","component RBL of COMPASS histone trimethylation complex","protein_coding"
"Mp2g02710.1","No alias","Marchantia polymorpha","Thylakoid lumenal 19 kDa protein, chloroplastic OS=Arabidopsis thaliana (sp|p82658|tl19_arath : 187.0)","protein_coding"
"Mp2g11520.1","No alias","Marchantia polymorpha","CPP1-like transcription factor","protein_coding"
"Mp2g11680.1","No alias","Marchantia polymorpha","component NPL4 of NPL4-UFD1 heterodimer","protein_coding"
"Mp2g15400.1","No alias","Marchantia polymorpha","arginase","protein_coding"
"Mp2g15500.1","No alias","Marchantia polymorpha","RBR-Ariadne-class E3 ubiquitin ligase","protein_coding"
"Mp2g15590.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp2g16200.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp2g17460.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp2g19670.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp2g21860.1","No alias","Marchantia polymorpha","WD repeat-containing protein 55 OS=Arabidopsis thaliana (sp|o80775|wdr55_arath : 303.0)","protein_coding"
"Mp2g22900.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp2g23650.1","No alias","Marchantia polymorpha","Probable plastid-lipid-associated protein 10, chloroplastic OS=Arabidopsis thaliana (sp|q8w4f1|pap10_arath : 241.0)","protein_coding"
"Mp2g26160.1","No alias","Marchantia polymorpha","Probable LRR receptor-like serine/threonine-protein kinase At1g67720 OS=Arabidopsis thaliana (sp|c0lgi2|y1677_arath : 298.0) & Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group(50.2.7 : 112.5)","protein_coding"
"Mp2g26720.1","No alias","Marchantia polymorpha","subfamily ABCB transporter","protein_coding"
"Mp3g00570.1","No alias","Marchantia polymorpha","thymidine kinase (TK1)","protein_coding"
"Mp3g04720.1","No alias","Marchantia polymorpha","Synaptotagmin-4 OS=Arabidopsis thaliana (sp|a0jjx5|syt4_arath : 294.0)","protein_coding"
"Mp3g06870.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp3g07470.1","No alias","Marchantia polymorpha","meiotic crossover double Holliday junction resolving protein (MLH3)","protein_coding"
"Mp3g08360.1","No alias","Marchantia polymorpha","LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana (sp|c0lgq5|gso1_arath : 266.0)","protein_coding"
"Mp3g08460.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp3g08520.1","No alias","Marchantia polymorpha","Hypersensitive-induced response protein 4 OS=Arabidopsis thaliana (sp|q9fhm7|hir4_arath : 413.0)","protein_coding"
"Mp3g09160.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp3g10910.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp3g11380.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp3g14440.1","No alias","Marchantia polymorpha","Enzyme classification.EC_1 oxidoreductases.EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen(50.1.13 : 366.3) & Flavonoid 3,5-hydroxylase OS=Eustoma exaltatum subsp. russellianum (sp|q96418|c75a5_euser : 314.0)","protein_coding"
"Mp3g16870.1","No alias","Marchantia polymorpha","assembly factor IBA57 of plastidial SUF system transfer phase","protein_coding"
"Mp3g17450.1","No alias","Marchantia polymorpha","NBR1 autophagosome autophagic adapter protein","protein_coding"
"Mp3g19750.1","No alias","Marchantia polymorpha","protein factor U5-40kDa/snRNP40 of U5 small nuclear ribonucleoprotein particle (snRNP)","protein_coding"
"Mp3g21170.1","No alias","Marchantia polymorpha","starch branching enzyme","protein_coding"
"Mp3g24980.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp4g00850.1","No alias","Marchantia polymorpha","DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Oryza sativa subsp. japonica (sp|q0jfn7|rh58_orysj : 397.0)","protein_coding"
"Mp4g02320.1","No alias","Marchantia polymorpha","component Pex13 of cargo-receptor docking complex","protein_coding"
"Mp4g04420.1","No alias","Marchantia polymorpha","P2A-type calcium cation-transporting ATPase (ECA)","protein_coding"
"Mp4g07510.1","No alias","Marchantia polymorpha","component PsbQ of PS-II oxygen-evolving center","protein_coding"
"Mp4g12180.1","No alias","Marchantia polymorpha","PrfB-type translation peptide chain release factor","protein_coding"
"Mp4g12490.1","No alias","Marchantia polymorpha","transcription factor (MADS/AGL)","protein_coding"
"Mp4g13380.1","No alias","Marchantia polymorpha","basal transcription factor (Sigma)","protein_coding"
"Mp4g14070.1","No alias","Marchantia polymorpha","oxygen-dependent coproporphyrinogen III oxidase (HemF)","protein_coding"
"Mp4g15340.1","No alias","Marchantia polymorpha","component BAF60 of chromatin remodeling complex","protein_coding"
"Mp4g20690.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp4g22890.1","No alias","Marchantia polymorpha","transcription factor (NAC)","protein_coding"
"Mp4g23100.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp5g05100.1","No alias","Marchantia polymorpha","Protein HESO1 OS=Arabidopsis thaliana (sp|q5xet5|heso1_arath : 143.0)","protein_coding"
"Mp5g06550.1","No alias","Marchantia polymorpha","PRONE-type RopGEF guanine nucleotide exchange factor","protein_coding"
"Mp5g06690.1","No alias","Marchantia polymorpha","arsenite transporter (ACR3)","protein_coding"
"Mp5g08290.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp5g12060.1","No alias","Marchantia polymorpha","Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis thaliana (sp|q0wky2|ccr4e_arath : 318.0)","protein_coding"
"Mp5g17930.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp5g18040.1","No alias","Marchantia polymorpha","catalytic component CLF|SWN|MEA of VRN/FIS/EMF core complexes. class I/Ez histone methyltransferase component of histone lysine methylation/demethylation","protein_coding"
"Mp5g19290.1","No alias","Marchantia polymorpha","Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana (sp|q9fg36|trl31_arath : 157.0)","protein_coding"
"Mp5g20400.1","No alias","Marchantia polymorpha","protein kinase (LRR-VIII-1)","protein_coding"
"Mp5g22250.1","No alias","Marchantia polymorpha","HVA22-like protein k OS=Arabidopsis thaliana (sp|q6nly8|ha22k_arath : 205.0)","protein_coding"
"Mp6g00800.1","No alias","Marchantia polymorpha","component Pex2 of receptor polyubiquitination system","protein_coding"
"Mp6g01360.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp6g03560.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp6g04440.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp6g04930.1","No alias","Marchantia polymorpha","Histidine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana (sp|o82413|syhm_arath : 98.6)","protein_coding"
"Mp6g07150.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp6g10490.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp6g12210.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp6g14940.1","No alias","Marchantia polymorpha","KA120 nucleocytoplasmic import karyopherin","protein_coding"
"Mp6g16150.1","No alias","Marchantia polymorpha","bifunctional molybdopterin adenylyltransferase and molybdenumtransferase (CNX1)","protein_coding"
"Mp6g16920.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp6g20090.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp7g01200.1","No alias","Marchantia polymorpha","tRNA cytidine-methyltransferase (TRM140)","protein_coding"
"Mp7g06030.1","No alias","Marchantia polymorpha","RING-H2-class E3 ligase","protein_coding"
"Mp7g06240.1","No alias","Marchantia polymorpha","protein kinase (LRR-III)","protein_coding"
"Mp7g07010.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp7g10860.1","No alias","Marchantia polymorpha","Purple acid phosphatase 2 OS=Ipomoea batatas (sp|q9sdz9|ppaf2_ipoba : 351.0)","protein_coding"
"Mp7g11230.1","No alias","Marchantia polymorpha","endoribonuclease (RNase Z)","protein_coding"
"Mp7g15030.1","No alias","Marchantia polymorpha","basal transcription factor (Sigma)","protein_coding"
"Mp7g16890.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp7g17000.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp7g18350.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp8g03840.1","No alias","Marchantia polymorpha","motor protein (Kinesin-14)","protein_coding"
"Mp8g08230.1","No alias","Marchantia polymorpha","CORVET-specific component VPS8 of HOPS/CORVET membrane tethering complexes","protein_coding"
"Mp8g09720.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp8g11020.1","No alias","Marchantia polymorpha","DEAD-box ATP-dependent RNA helicase 50 OS=Arabidopsis thaliana (sp|q8gug7|rh50_arath : 441.0)","protein_coding"
"Mp8g12190.1","No alias","Marchantia polymorpha","LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana (sp|c0lgq5|gso1_arath : 254.0)","protein_coding"
"Mp8g12660.1","No alias","Marchantia polymorpha","delta-4 sphingolipid desaturase","protein_coding"
"Mp8g15020.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp8g17330.1","No alias","Marchantia polymorpha","acyl carrier protein (ptACP)","protein_coding"
"Mp8g18010.1","No alias","Marchantia polymorpha","component CPFS5/CFIm25 of Cleavage Factor I (CF-Im) complex","protein_coding"
"MpVg00350.1","No alias","Marchantia polymorpha","No annotation","protein_coding"
"Pp1s100_106V6","No alias","Physcomitrella patens","unknown protein [Arabidopsis thaliana]","protein_coding"
"Pp1s100_141V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s100_218V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s101_149V6","No alias","Physcomitrella patens","cleavage and polyadenylation specificity factor a subunit c-terminal domain-containing protein","protein_coding"
"Pp1s101_174V6","No alias","Physcomitrella patens","chloroplast 30s ribosomal protein s10","protein_coding"
"Pp1s101_184V6","No alias","Physcomitrella patens","n-acetyl-gamma-glutamyl-phosphate reductase","protein_coding"
"Pp1s101_215V6","No alias","Physcomitrella patens","udp-n-acetylmuramoylalanyl-d-glutamate-- -diaminopimelate ligase","protein_coding"
"Pp1s101_60V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s102_141V6","No alias","Physcomitrella patens","annexin a7","protein_coding"
"Pp1s104_76V6","No alias","Physcomitrella patens","aaa atpase domain-containing protein","protein_coding"
"Pp1s106_204V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s108_176V6","No alias","Physcomitrella patens","beta-ketoacyl-acp synthase ii","protein_coding"
"Pp1s10_81V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s110_41V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s111_146V6","No alias","Physcomitrella patens","conserved hypothetical protein [Ricinus communis]","protein_coding"
"Pp1s111_53V6","No alias","Physcomitrella patens","F7A7.110; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s111_84V6","No alias","Physcomitrella patens","tetratricopeptide tpr_2","protein_coding"
"Pp1s113_138V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s114_138V6","No alias","Physcomitrella patens","ribonucleoprotein a","protein_coding"
"Pp1s114_157V6","No alias","Physcomitrella patens","threonine synthase","protein_coding"
"Pp1s114_17V6","No alias","Physcomitrella patens","F9G14.170; pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]","protein_coding"
"Pp1s115_193V6","No alias","Physcomitrella patens","cytochrome p450","protein_coding"
"Pp1s115_61V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s116_151V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s116_40V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s118_180V6","No alias","Physcomitrella patens","F14M13.3; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s118_224V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s119_145V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s119_146V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s11_10V6","No alias","Physcomitrella patens","pentatricopeptide repeat-containing","protein_coding"
"Pp1s11_285V6","No alias","Physcomitrella patens","early flowering 3","protein_coding"
"Pp1s120_75V6","No alias","Physcomitrella patens","dna binding","protein_coding"
"Pp1s122_35V6","No alias","Physcomitrella patens","glycosyl hydrolase family protein 43","protein_coding"
"Pp1s123_1V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s123_58V6","No alias","Physcomitrella patens","glycine-rich rna-binding protein 2","protein_coding"
"Pp1s124_113V6","No alias","Physcomitrella patens","T22J18.20; phosphoinositide phosphatase family protein [Arabidopsis thaliana]","protein_coding"
"Pp1s126_121V6","No alias","Physcomitrella patens","peptidase m16 family protein insulinase family protein","protein_coding"
"Pp1s126_141V6","No alias","Physcomitrella patens","rna polymerase sigma factor","protein_coding"
"Pp1s126_155V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s126_78V6","No alias","Physcomitrella patens","apurinic endonuclease-redox protein","protein_coding"
"Pp1s129_115V6","No alias","Physcomitrella patens","F19G14.11; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s129_147V6","No alias","Physcomitrella patens","lysosomal alpha-","protein_coding"
"Pp1s129_193V6","No alias","Physcomitrella patens","gtp-binding protein","protein_coding"
"Pp1s12_176V6","No alias","Physcomitrella patens","one helix protein","protein_coding"
"Pp1s12_191V6","No alias","Physcomitrella patens","dead deah box helicase domain protein","protein_coding"
"Pp1s12_19V6","No alias","Physcomitrella patens","hexokinase 3","protein_coding"
"Pp1s12_71V6","No alias","Physcomitrella patens","calmodulin binding","protein_coding"
"Pp1s131_109V6","No alias","Physcomitrella patens","ARID/BRIGHT DNA-binding domain-containing protein","protein_coding"
"Pp1s131_152V6","No alias","Physcomitrella patens","T7I23.28; GRAM domain-containing protein-related [Arabidopsis thaliana]","protein_coding"
"Pp1s131_175V6","No alias","Physcomitrella patens","ferredoxin--nadp+ reductase-like protein","protein_coding"
"Pp1s131_178V6","No alias","Physcomitrella patens","T3P4.5; aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [EC:4.2.1.3] [KO:K01680] [Arabidopsis thaliana]","protein_coding"
"Pp1s131_6V6","No alias","Physcomitrella patens","6-phosphogluconate dehydrogenase","protein_coding"
"Pp1s136_28V6","No alias","Physcomitrella patens","MWC10.3; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s137_86V6","No alias","Physcomitrella patens","atp synthase delta chain","protein_coding"
"Pp1s138_111V6","No alias","Physcomitrella patens","contains EST AU032882(S15791) unknown protein [Oryza sativa (japonica cultivar-group)]","protein_coding"
"Pp1s138_79V6","No alias","Physcomitrella patens","calcium-dependent protein","protein_coding"
"Pp1s139_105V6","No alias","Physcomitrella patens","td and poz domain containing 2","protein_coding"
"Pp1s13_43V6","No alias","Physcomitrella patens","receptor-like kinase","protein_coding"
"Pp1s140_7V6","No alias","Physcomitrella patens","MYJ24.5; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s142_146V6","No alias","Physcomitrella patens","glu leu phe val dehydrogenase","protein_coding"
"Pp1s143_140V6","No alias","Physcomitrella patens","assembly protein","protein_coding"
"Pp1s144_137V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s144_163V6","No alias","Physcomitrella patens","senescence-associated family protein","protein_coding"
"Pp1s144_64V6","No alias","Physcomitrella patens","at3g17900 meb5_12-like protein","protein_coding"
"Pp1s145_107V6","No alias","Physcomitrella patens","serine-threonine protein","protein_coding"
"Pp1s145_38V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s146_6V6","No alias","Physcomitrella patens","MBD2.15; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s148_48V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s149_154V6","No alias","Physcomitrella patens","aminopeptidase n","protein_coding"
"Pp1s149_247V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s149_265V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s14_222V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s14_298V6","No alias","Physcomitrella patens","ru large subunit-binding protein subunit beta","protein_coding"
"Pp1s151_41V6","No alias","Physcomitrella patens","F24J1.31; myb family transcription factor (MYB105) [Arabidopsis thaliana]","protein_coding"
"Pp1s152_35V6","No alias","Physcomitrella patens","cystathionine gamma synthase","protein_coding"
"Pp1s152_57V6","No alias","Physcomitrella patens","F28O16.17; nodulin, putative [Arabidopsis thaliana]","protein_coding"
"Pp1s152_87V6","No alias","Physcomitrella patens","phosphoglucomutase phosphomannomutase family protein","protein_coding"
"Pp1s154_111V6","No alias","Physcomitrella patens","Histidine-rich glycoprotein precursor [Plasmodium lophurae]","protein_coding"
"Pp1s156_44V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s156_57V6","No alias","Physcomitrella patens","pyruvate dehydrogenase e1 component subunit beta","protein_coding"
"Pp1s15_304V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s15_485V6","No alias","Physcomitrella patens","ru large subunit-binding protein subunit beta","protein_coding"
"Pp1s161_120V6","No alias","Physcomitrella patens","rvde1","protein_coding"
"Pp1s162_102V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s162_106V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s162_123V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s163_36V6","No alias","Physcomitrella patens","diphosphate--fructose-6-phosphate 1-phosphotransferase","protein_coding"
"Pp1s163_63V6","No alias","Physcomitrella patens","cinnamyl alcohol dehydrogenase","protein_coding"
"Pp1s164_63V6","No alias","Physcomitrella patens","extremely serine rich protein [Candida albicans SC5314]","protein_coding"
"Pp1s165_139V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s167_116V6","No alias","Physcomitrella patens","metal ion binding","protein_coding"
"Pp1s167_128V6","No alias","Physcomitrella patens","gata transcription factor 19","protein_coding"
"Pp1s167_20V6","No alias","Physcomitrella patens","pyrophosphate-dependent phosphofructokinase alpha subunit","protein_coding"
"Pp1s167_40V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s167_49V6","No alias","Physcomitrella patens","tbp-associated factor 2","protein_coding"
"Pp1s169_65V6","No alias","Physcomitrella patens","rna polymerase alpha subunit","protein_coding"
"Pp1s16_179V6","No alias","Physcomitrella patens","thiazole biosynthetic enzyme","protein_coding"
"Pp1s16_322V6","No alias","Physcomitrella patens","rubisco subunit binding-protein alpha subunit","protein_coding"
"Pp1s16_337V6","No alias","Physcomitrella patens","glutathione-regulated potassium-efflux system protein","protein_coding"
"Pp1s16_94V6","No alias","Physcomitrella patens","interferon-related developmental regulator family protein ifrd protein family","protein_coding"
"Pp1s170_42V6","No alias","Physcomitrella patens","f-box family protein","protein_coding"
"Pp1s171_80V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s172_5V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s173_23V6","No alias","Physcomitrella patens","double-stranded rna binding","protein_coding"
"Pp1s174_50V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s175_67V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s17_312V6","No alias","Physcomitrella patens","poly atp nad","protein_coding"
"Pp1s17_332V6","No alias","Physcomitrella patens","ap2 erf domain-containing transcription factor","protein_coding"
"Pp1s180_69V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s180_73V6","No alias","Physcomitrella patens","gibberellin 20-oxidase","protein_coding"
"Pp1s181_117V6","No alias","Physcomitrella patens","set domain-containing protein","protein_coding"
"Pp1s184_139V6","No alias","Physcomitrella patens","F7F1.6; ATP synthase protein I -related [Arabidopsis thaliana]","protein_coding"
"Pp1s186_22V6","No alias","Physcomitrella patens","MIK19.25; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s187_94V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s188_15V6","No alias","Physcomitrella patens","2-isopropylmalate synthase b","protein_coding"
"Pp1s189_18V6","No alias","Physcomitrella patens","photosystem ii stability assembly factor hcf136","protein_coding"
"Pp1s189_27V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s189_43V6","No alias","Physcomitrella patens","riboflavin biosynthesis protein","protein_coding"
"Pp1s18_129V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s18_331V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s18_50V6","No alias","Physcomitrella patens","T19D16.17; pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]","protein_coding"
"Pp1s190_104V6","No alias","Physcomitrella patens","thylakoid lumenal kda chloroplast","protein_coding"
"Pp1s192_39V6","No alias","Physcomitrella patens","glucose-6-phosphate dehydrogenase","protein_coding"
"Pp1s194_97V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s195_2V6","No alias","Physcomitrella patens","pan3 polya specific ribonuclease subunit homolog ( cerevisiae)","protein_coding"
"Pp1s195_99V6","No alias","Physcomitrella patens","T18K17.13; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s196_40V6","No alias","Physcomitrella patens","T1F9.13; S-locus protein kinase, putative [Arabidopsis thaliana]","protein_coding"
"Pp1s198_40V6","No alias","Physcomitrella patens","gibberellin 20-oxidase","protein_coding"
"Pp1s199_21V6","No alias","Physcomitrella patens","myosin","protein_coding"
"Pp1s199_82V6","No alias","Physcomitrella patens","multi-sensor hybrid histidine kinase","protein_coding"
"Pp1s19_232V6","No alias","Physcomitrella patens","Crtac1; cartilage acidic protein 1 [Rattus norvegicus]","protein_coding"
"Pp1s19_262V6","No alias","Physcomitrella patens","methylcrotonoyl-coenzyme a carboxylase 1","protein_coding"
"Pp1s19_69V6","No alias","Physcomitrella patens","F5I6.2; DNA-binding protein, putative [Arabidopsis thaliana]","protein_coding"
"Pp1s1_168V6","No alias","Physcomitrella patens","triosephosphate isomerase","protein_coding"
"Pp1s1_203V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s1_334V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s1_338V6","No alias","Physcomitrella patens","ethylene receptor","protein_coding"
"Pp1s1_351V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s1_377V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s1_490V6","No alias","Physcomitrella patens","C630005D06Rik; RIKEN cDNA C630005D06 gene [Mus musculus]","protein_coding"
"Pp1s1_723V6","No alias","Physcomitrella patens","Probable transcriptional regulator RABBIT EARS [Arabidopsis thaliana]","protein_coding"
"Pp1s1_749V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s1_837V6","No alias","Physcomitrella patens","cdpk-related protein kinase","protein_coding"
"Pp1s200_12V6","No alias","Physcomitrella patens","F6F9.6; jacalin lectin family protein [Arabidopsis thaliana]","protein_coding"
"Pp1s200_27V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s200_74V6","No alias","Physcomitrella patens","lysosomal pro-x","protein_coding"
"Pp1s206_108V6","No alias","Physcomitrella patens","F5N5.17; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s207_51V6","No alias","Physcomitrella patens","thyroid hormone receptor-associated","protein_coding"
"Pp1s207_73V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s20_273V6","No alias","Physcomitrella patens","phosphoribulokinase precursor","protein_coding"
"Pp1s20_66V6","No alias","Physcomitrella patens","-diacylglycerol 3-beta-","protein_coding"
"Pp1s211_107V6","No alias","Physcomitrella patens","2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase","protein_coding"
"Pp1s211_35V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s214_37V6","No alias","Physcomitrella patens","ma3 domain-containing protein","protein_coding"
"Pp1s214_87V6","No alias","Physcomitrella patens","type iii chlorophyll a b-binding protein","protein_coding"
"Pp1s217_1V6","No alias","Physcomitrella patens","protein phosphatase","protein_coding"
"Pp1s21_177V6","No alias","Physcomitrella patens","F3K23.29; forkhead-associated domain-containing protein / FHA domain-containing protein [Arabidopsis thaliana]","protein_coding"
"Pp1s21_67V6","No alias","Physcomitrella patens","LOC312668; similar to voltage-gated calcium channel alpha(2)delta-4 subunit [KO:K04861] [Rattus norvegicus]","protein_coding"
"Pp1s21_68V6","No alias","Physcomitrella patens","F21M11.31; targeting protein-related [Arabidopsis thaliana]","protein_coding"
"Pp1s220_2V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s224_116V6","No alias","Physcomitrella patens","T5M7.14; hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]","protein_coding"
"Pp1s227_20V6","No alias","Physcomitrella patens","acting on ester","protein_coding"
"Pp1s227_69V6","No alias","Physcomitrella patens","zinc finger","protein_coding"
"Pp1s229_8V6","No alias","Physcomitrella patens","F19G14.11; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s22_164V6","No alias","Physcomitrella patens","dna binding magnesium ion binding nuclease","protein_coding"
"Pp1s22_310V6","No alias","Physcomitrella patens","1-deoxy-d-xylulose-5-phosphate synthase","protein_coding"
"Pp1s22_325V6","No alias","Physcomitrella patens","transposon protein","protein_coding"
"Pp1s22_384V6","No alias","Physcomitrella patens","F18G18.20; serine-rich protein [Arabidopsis thaliana]","protein_coding"
"Pp1s230_33V6","No alias","Physcomitrella patens","holiday junction uri domain nuclease","protein_coding"
"Pp1s235_69V6","No alias","Physcomitrella patens","dead box atp-dependent rna","protein_coding"
"Pp1s235_95V6","No alias","Physcomitrella patens","cytochrome p450-like protein","protein_coding"
"Pp1s236_38V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s237_52V6","No alias","Physcomitrella patens","isocitrate lyase and phosphorylmutase","protein_coding"
"Pp1s240_43V6","No alias","Physcomitrella patens","LOC479261; similar to SFLQ611 [Canis familiaris]","protein_coding"
"Pp1s241_34V6","No alias","Physcomitrella patens","30s ribosomal protein s21","protein_coding"
"Pp1s242_21V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s243_33V6","No alias","Physcomitrella patens","MUK11.12; pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]","protein_coding"
"Pp1s244_85V6","No alias","Physcomitrella patens","ribulose bisphosphate carboxylase oxygenase activase chloroplast","protein_coding"
"Pp1s245_29V6","No alias","Physcomitrella patens","Isocitrate dehydrogenase [NADP], chloroplast precursor (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) [Medicago sativa]","protein_coding"
"Pp1s245_58V6","No alias","Physcomitrella patens","T16O11.14; rhodanese-like domain-containing protein [Arabidopsis thaliana]","protein_coding"
"Pp1s246_95V6","No alias","Physcomitrella patens","werner syndrome protein","protein_coding"
"Pp1s249_41V6","No alias","Physcomitrella patens","abc transporter family of the mitochondria family","protein_coding"
"Pp1s249_55V6","No alias","Physcomitrella patens","F7H1.9; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s252_67V6","No alias","Physcomitrella patens","multidrug resistance protein","protein_coding"
"Pp1s254_10V6","No alias","Physcomitrella patens","rhomboid family protein","protein_coding"
"Pp1s255_4V6","No alias","Physcomitrella patens","MDJ22.6; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s255_65V6","No alias","Physcomitrella patens","K21G20.4; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s256_42V6","No alias","Physcomitrella patens","ankyrin repeat-containing","protein_coding"
"Pp1s259_103V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s25_370V6","No alias","Physcomitrella patens","3-hydroxyisobutyrate dehydrogenase","protein_coding"
"Pp1s260_6V6","No alias","Physcomitrella patens","29 kDa ribonucleoprotein A, chloroplast precursor (CP29A) [Nicotiana sylvestris]","protein_coding"
"Pp1s263_21V6","No alias","Physcomitrella patens","cyclin h","protein_coding"
"Pp1s263_72V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s266_52V6","No alias","Physcomitrella patens","peptide chain release factor 3","protein_coding"
"Pp1s267_24V6","No alias","Physcomitrella patens","cycling dof factor 2","protein_coding"
"Pp1s267_30V6","No alias","Physcomitrella patens","heat shock protein","protein_coding"
"Pp1s269_40V6","No alias","Physcomitrella patens","methyltransferase type 11","protein_coding"
"Pp1s26_5V6","No alias","Physcomitrella patens","sll2 protein","protein_coding"
"Pp1s270_81V6","No alias","Physcomitrella patens","kinesin light chain","protein_coding"
"Pp1s273_65V6","No alias","Physcomitrella patens","FCAALL.155; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s275_103V6","No alias","Physcomitrella patens","zac arf gtpase activator phospholipid binding","protein_coding"
"Pp1s276_23V6","No alias","Physcomitrella patens","mitochondrial import receptor subunit tom20","protein_coding"
"Pp1s280_70V6","No alias","Physcomitrella patens","Nonspecific lipid-transfer protein 4 precursor (LTP 4) [Oryza sativa]","protein_coding"
"Pp1s283_74V6","No alias","Physcomitrella patens","potassium channel","protein_coding"
"Pp1s284_7V6","No alias","Physcomitrella patens","pyruvate kinase","protein_coding"
"Pp1s286_12V6","No alias","Physcomitrella patens","coproporphyrinogen iii oxidase","protein_coding"
"Pp1s28_124V6","No alias","Physcomitrella patens","F27K7.6; nucleolin, putative [Arabidopsis thaliana]","protein_coding"
"Pp1s28_156V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s28_82V6","No alias","Physcomitrella patens","rna polymerase sigma factor","protein_coding"
"Pp1s28_86V6","No alias","Physcomitrella patens","rna polymerase sigma factor","protein_coding"
"Pp1s291_43V6","No alias","Physcomitrella patens","transaldolase-like protein","protein_coding"
"Pp1s292_42V6","No alias","Physcomitrella patens","MLN21.7; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s293_97V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s295_46V6","No alias","Physcomitrella patens","glycyl-trna beta subunit","protein_coding"
"Pp1s299_36V6","No alias","Physcomitrella patens","extremely serine rich protein [Candida albicans SC5314]","protein_coding"
"Pp1s29_146V6","No alias","Physcomitrella patens","choline-phosphate cytidylyltransferase b","protein_coding"
"Pp1s29_150V6","No alias","Physcomitrella patens","fork head domain protein, putative [Plasmodium falciparum 3D7]","protein_coding"
"Pp1s2_123V6","No alias","Physcomitrella patens","tripeptidyl peptidase ii","protein_coding"
"Pp1s2_15V6","No alias","Physcomitrella patens","ribulose-phosphate 3-epimerase","protein_coding"
"Pp1s2_193V6","No alias","Physcomitrella patens","F11I11.70; pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]","protein_coding"
"Pp1s2_382V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s2_522V6","No alias","Physcomitrella patens","phosphoglycerate dehydrogenase","protein_coding"
"Pp1s2_585V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s2_95V6","No alias","Physcomitrella patens","hypothetical protein [Dictyostelium discoideum]","protein_coding"
"Pp1s301_15V6","No alias","Physcomitrella patens","T10C21.140; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s301_54V6","No alias","Physcomitrella patens","amidase family protein","protein_coding"
"Pp1s303_20V6","No alias","Physcomitrella patens","MYH9.21; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s303_9V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s306_69V6","No alias","Physcomitrella patens","K12G2.7; lipase (class 3) family [Arabidopsis thaliana]","protein_coding"
"Pp1s307_65V6","No alias","Physcomitrella patens","porphobilinogen deaminase","protein_coding"
"Pp1s309_55V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s30_102V6","No alias","Physcomitrella patens","F12P21.6; CBL-interacting protein kinase 23 (CIPK23) [EC:2.7.1.-] [Arabidopsis thaliana]","protein_coding"
"Pp1s30_317V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s311_30V6","No alias","Physcomitrella patens","Golden 2-like protein 1","protein_coding"
"Pp1s314_34V6","No alias","Physcomitrella patens","F18F4.150; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s319_18V6","No alias","Physcomitrella patens","ccr4-not transcription complex","protein_coding"
"Pp1s31_294V6","No alias","Physcomitrella patens","serine arginine rich splicing","protein_coding"
"Pp1s31_77V6","No alias","Physcomitrella patens","T23K23.9; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s323_3V6","No alias","Physcomitrella patens","30s ribosomal protein","protein_coding"
"Pp1s323_62V6","No alias","Physcomitrella patens","protein binding","protein_coding"
"Pp1s328_46V6","No alias","Physcomitrella patens","MAA21.150; 9-cis-epoxycarotenoid dioxygenase / neoxanthin cleavage enzyme / NCED1 / carotenoid cleavage dioxygenase 1 (CCD1) [Arabidopsis thaliana]","protein_coding"
"Pp1s328_47V6","No alias","Physcomitrella patens","MIE1.9; C2 domain-containing protein [Arabidopsis thaliana]","protein_coding"
"Pp1s32_177V6","No alias","Physcomitrella patens","T15G18.70; beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana]","protein_coding"
"Pp1s331_14V6","No alias","Physcomitrella patens","numod3 motif family expressed","protein_coding"
"Pp1s333_18V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s336_4V6","No alias","Physcomitrella patens","vacuolar atp synthase subunit","protein_coding"
"Pp1s338_42V6","No alias","Physcomitrella patens","had superfamily (subfamily ig) 5 -nucleotidase","protein_coding"
"Pp1s33_389V6","No alias","Physcomitrella patens","Fructose-bisphosphate aldolase, chloroplast precursor (ALDP) [no tax name]","protein_coding"
"Pp1s342_22V6","No alias","Physcomitrella patens","cytochrome p450","protein_coding"
"Pp1s344_18V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s347_23V6","No alias","Physcomitrella patens","methionyl-trna synthetase","protein_coding"
"Pp1s34_387V6","No alias","Physcomitrella patens","rna polymerase sigma factor","protein_coding"
"Pp1s34_44V6","No alias","Physcomitrella patens","amino acid transporter, putative [Entamoeba histolytica HM-1:IMSS]","protein_coding"
"Pp1s352_4V6","No alias","Physcomitrella patens","translation elongation factor g","protein_coding"
"Pp1s353_60V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s355_45V6","No alias","Physcomitrella patens","glutathione transferase zeta 1","protein_coding"
"Pp1s355_46V6","No alias","Physcomitrella patens","aminotransferase y4ub","protein_coding"
"Pp1s355_53V6","No alias","Physcomitrella patens","two-component system sensor kinase","protein_coding"
"Pp1s356_44V6","No alias","Physcomitrella patens","proteophosphoglycan ppg1 [Leishmania major]","protein_coding"
"Pp1s35_317V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s360_50V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s363_14V6","No alias","Physcomitrella patens","AP22.13; tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]","protein_coding"
"Pp1s363_15V6","No alias","Physcomitrella patens","eukaryotic translation initiation factor 3","protein_coding"
"Pp1s369_27V6","No alias","Physcomitrella patens","phytoene desaturase","protein_coding"
"Pp1s36_133V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s36_221V6","No alias","Physcomitrella patens","LOC472870; similar to ENSANGP00000003674 [Pan troglodytes]","protein_coding"
"Pp1s371_25V6","No alias","Physcomitrella patens","fc2.2 gene for putative ferrochelatase protein FC2.2","protein_coding"
"Pp1s374_50V6","No alias","Physcomitrella patens","ribulose- -bisphosphate carboxylase oxygenase small subunit","protein_coding"
"Pp1s376_31V6","No alias","Physcomitrella patens","ptac12 (plastid transcriptionally active12)","protein_coding"
"Pp1s376_45V6","No alias","Physcomitrella patens","at3g27530 mmj24_7","protein_coding"
"Pp1s37_111V6","No alias","Physcomitrella patens","peptidyl-prolyl cis-trans isomerase","protein_coding"
"Pp1s37_186V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s37_26V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s37_33V6","No alias","Physcomitrella patens","citrate synthase","protein_coding"
"Pp1s380_13V6","No alias","Physcomitrella patens","zinc finger ccch-type containing 4","protein_coding"
"Pp1s381_46V6","No alias","Physcomitrella patens","ferredoxin (2fe-2s)","protein_coding"
"Pp1s381_52V6","No alias","Physcomitrella patens","multidrug resistance","protein_coding"
"Pp1s386_21V6","No alias","Physcomitrella patens","phosphoribosylformylglycinamidine synthase","protein_coding"
"Pp1s38_285V6","No alias","Physcomitrella patens","F14P1.1; wound-responsive family protein [Arabidopsis thaliana]","protein_coding"
"Pp1s38_310V6","No alias","Physcomitrella patens","transcription factor","protein_coding"
"Pp1s38_401V6","No alias","Physcomitrella patens","histidyl-trna synthetase","protein_coding"
"Pp1s395_13V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s399_19V6","No alias","Physcomitrella patens","vitamin-b12 independent methionine 5-methyltetrahydropteroyltriglutamate-homocysteine","protein_coding"
"Pp1s3_252V6","No alias","Physcomitrella patens","F2D10.27; armadillo/beta-catenin repeat protein-related / U-box domain-containing protein [Arabidopsis thaliana]","protein_coding"
"Pp1s3_329V6","No alias","Physcomitrella patens","gata transcription factor 19","protein_coding"
"Pp1s3_414V6","No alias","Physcomitrella patens","F2D10.27; armadillo/beta-catenin repeat protein-related / U-box domain-containing protein [Arabidopsis thaliana]","protein_coding"
"Pp1s3_491V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s401_26V6","No alias","Physcomitrella patens","RGD1311430_predicted; similar to hypothetical protein FLJ32844 (predicted) [Rattus norvegicus]","protein_coding"
"Pp1s402_42V6","No alias","Physcomitrella patens","thiamin biosynthesis protein","protein_coding"
"Pp1s409_17V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s409_21V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s40_143V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s40_14V6","No alias","Physcomitrella patens","30s ribosomal protein s1","protein_coding"
"Pp1s40_55V6","No alias","Physcomitrella patens","ent-copalyl diphosphate synthase","protein_coding"
"Pp1s414_9V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s419_10V6","No alias","Physcomitrella patens","lipoxygenase","protein_coding"
"Pp1s419_6V6","No alias","Physcomitrella patens","lipoxygenase","protein_coding"
"Pp1s41_162V6","No alias","Physcomitrella patens","chloroplast sedoheptulose- -bisphosphatase","protein_coding"
"Pp1s41_313V6","No alias","Physcomitrella patens","zinc ribbon 1","protein_coding"
"Pp1s42_171V6","No alias","Physcomitrella patens","cell division protein","protein_coding"
"Pp1s42_251V6","No alias","Physcomitrella patens","glycine-rich rna-binding protein 2","protein_coding"
"Pp1s43_153V6","No alias","Physcomitrella patens","agenet domain-containing protein","protein_coding"
"Pp1s43_234V6","No alias","Physcomitrella patens","tpr domain containingexpressed","protein_coding"
"Pp1s442_3V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s444_19V6","No alias","Physcomitrella patens","jmjc domain containing expressed","protein_coding"
"Pp1s44_176V6","No alias","Physcomitrella patens","50s ribosomal protein","protein_coding"
"Pp1s44_268V6","No alias","Physcomitrella patens","glycoside hydrolase family 77 protein","protein_coding"
"Pp1s44_269V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s44_310V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s456_23V6","No alias","Physcomitrella patens","cytochrome c biogenesis protein","protein_coding"
"Pp1s45_248V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s45_254V6","No alias","Physcomitrella patens","brassinosteroid insensitive 1-associated receptor kinase 1","protein_coding"
"Pp1s46_176V6","No alias","Physcomitrella patens","yeats domain-containing","protein_coding"
"Pp1s472_10V6","No alias","Physcomitrella patens","glucose-methanol-choline oxidoreductase family protein","protein_coding"
"Pp1s47_276V6","No alias","Physcomitrella patens","dna-damage-inducible protein","protein_coding"
"Pp1s497_3V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s49_101V6","No alias","Physcomitrella patens","protein binding","protein_coding"
"Pp1s49_135V6","No alias","Physcomitrella patens","receptor protein","protein_coding"
"Pp1s49_156V6","No alias","Physcomitrella patens","Octapeptide-repeat protein T2 [Mus musculus]","protein_coding"
"Pp1s49_243V6","No alias","Physcomitrella patens","translation elongation factor p","protein_coding"
"Pp1s4_320V6","No alias","Physcomitrella patens","trans-cinnamate 4-monooxygenase","protein_coding"
"Pp1s4_335V6","No alias","Physcomitrella patens","acetylornithine aminotransferase","protein_coding"
"Pp1s4_431V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s4_481V6","No alias","Physcomitrella patens","white-brown-complex abc transporter family","protein_coding"
"Pp1s4_485V6","No alias","Physcomitrella patens","MUD21.7; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s5038_2V6","No alias","Physcomitrella patens","rna sigma-24 ecf subfamily","protein_coding"
"Pp1s50_26V6","No alias","Physcomitrella patens","hyoscyamine 6-","protein_coding"
"Pp1s50_45V6","No alias","Physcomitrella patens","retinol dehydrogenase 14","protein_coding"
"Pp1s515_4V6","No alias","Physcomitrella patens","rna binding motif x-linked 2","protein_coding"
"Pp1s51_224V6","No alias","Physcomitrella patens","wd-repeat protein","protein_coding"
"Pp1s51_260V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s51_336V6","No alias","Physcomitrella patens","T9L24.40; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s52_235V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s52_44V6","No alias","Physcomitrella patens","phenylalanine ammonia-lyase","protein_coding"
"Pp1s53_36V6","No alias","Physcomitrella patens","inorganic phosphate","protein_coding"
"Pp1s54_101V6","No alias","Physcomitrella patens","tic20-like protein","protein_coding"
"Pp1s54_79V6","No alias","Physcomitrella patens","nucleolar rna helicase 2","protein_coding"
"Pp1s55_274V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s56_13V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s58_143V6","No alias","Physcomitrella patens","phospholipase d","protein_coding"
"Pp1s59_228V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s59_249V6","No alias","Physcomitrella patens","pre-mrna-processing protein","protein_coding"
"Pp1s59_328V6","No alias","Physcomitrella patens","rubredoxin","protein_coding"
"Pp1s60_169V6","No alias","Physcomitrella patens","ribosomal protein l12","protein_coding"
"Pp1s61_255V6","No alias","Physcomitrella patens","trigger factor","protein_coding"
"Pp1s61_37V6","No alias","Physcomitrella patens","mitochondrial carrier protein","protein_coding"
"Pp1s61_87V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s62_223V6","No alias","Physcomitrella patens","palmitoyl-protein thioesterase 1 precursor","protein_coding"
"Pp1s62_94V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s64_54V6","No alias","Physcomitrella patens","tubulin-specific chaperone a","protein_coding"
"Pp1s65_28V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s66_139V6","No alias","Physcomitrella patens","methionyl-trna synthetase","protein_coding"
"Pp1s67_98V6","No alias","Physcomitrella patens","pentatricopeptide repeat-containing","protein_coding"
"Pp1s68_166V6","No alias","Physcomitrella patens","gpi-anchor biosynthetic protein","protein_coding"
"Pp1s6_132V6","No alias","Physcomitrella patens","thioredoxin y","protein_coding"
"Pp1s6_154V6","No alias","Physcomitrella patens","calmodulin binding","protein_coding"
"Pp1s6_191V6","No alias","Physcomitrella patens","F17J16.90; pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]","protein_coding"
"Pp1s6_375V6","No alias","Physcomitrella patens","electron-transferring-flavoprotein dehydrogenase","protein_coding"
"Pp1s70_200V6","No alias","Physcomitrella patens","pentatricopeptide repeat-containing","protein_coding"
"Pp1s70_257V6","No alias","Physcomitrella patens","valyl-trna synthetase","protein_coding"
"Pp1s70_261V6","No alias","Physcomitrella patens","amino acid binding","protein_coding"
"Pp1s70_295V6","No alias","Physcomitrella patens","lipoic acid","protein_coding"
"Pp1s71_12V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s73_244V6","No alias","Physcomitrella patens","glucose-6-phosphate dehydrogenase","protein_coding"
"Pp1s74_190V6","No alias","Physcomitrella patens","Hypothetical protein MJ1051 [Methanocaldococcus jannaschii]","protein_coding"
"Pp1s74_243V6","No alias","Physcomitrella patens","elongation factor ts","protein_coding"
"Pp1s74_55V6","No alias","Physcomitrella patens","phytochrome o","protein_coding"
"Pp1s76_18V6","No alias","Physcomitrella patens","methionine s-methyltransferase","protein_coding"
"Pp1s77_123V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s78_181V6","No alias","Physcomitrella patens","LOC470834; similar to FLJ42117 protein [Pan troglodytes]","protein_coding"
"Pp1s7_127V6","No alias","Physcomitrella patens","F19P19.28; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s7_296V6","No alias","Physcomitrella patens","rna polymerase sigma factor","protein_coding"
"Pp1s7_315V6","No alias","Physcomitrella patens","F7H1.9; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s7_362V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s7_375V6","No alias","Physcomitrella patens","MUD21.7; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s7_429V6","No alias","Physcomitrella patens","histidine kinase cytokinin receptor","protein_coding"
"Pp1s80_14V6","No alias","Physcomitrella patens","contains EST(s): AU173140(R1319) [Oryza sativa (japonica cultivar-group)]","protein_coding"
"Pp1s80_151V6","No alias","Physcomitrella patens","rpoa2 gene for putative DNA-directed RNA polymerase alpha chain protein RPOA2","protein_coding"
"Pp1s81_153V6","No alias","Physcomitrella patens","F9N12.8; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s81_159V6","No alias","Physcomitrella patens","phy3 gene for phytochrome protein PHY3","protein_coding"
"Pp1s81_167V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s83_217V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s84_186V6","No alias","Physcomitrella patens","elongation factor 1-","protein_coding"
"Pp1s84_89V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s8506_1V6","No alias","Physcomitrella patens","rna polymerase sigma factor","protein_coding"
"Pp1s85_3V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s86_1V6","No alias","Physcomitrella patens","auxin response","protein_coding"
"Pp1s86_63V6","No alias","Physcomitrella patens","protein z","protein_coding"
"Pp1s88_47V6","No alias","Physcomitrella patens","thiamin biosynthesis protein","protein_coding"
"Pp1s89_161V6","No alias","Physcomitrella patens","fructose-bisphosphate aldolase","protein_coding"
"Pp1s89_78V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s8_227V6","No alias","Physcomitrella patens","T3G21.3; myb family transcription factor [Arabidopsis thaliana]","protein_coding"
"Pp1s90_110V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s90_164V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s91_149V6","No alias","Physcomitrella patens","mitochondrial carrier family","protein_coding"
"Pp1s91_60V6","No alias","Physcomitrella patens","ribonucleoprotein a","protein_coding"
"Pp1s93_121V6","No alias","Physcomitrella patens","integral membrane protein duf6 containing protein","protein_coding"
"Pp1s93_12V6","No alias","Physcomitrella patens","MDC12.6; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s93_177V6","No alias","Physcomitrella patens","F28O16.5; 12-oxophytodienoate reductase (OPR1) [Arabidopsis thaliana]","protein_coding"
"Pp1s93_184V6","No alias","Physcomitrella patens","transmembrane protein 65","protein_coding"
"Pp1s93_26V6","No alias","Physcomitrella patens","tetratricopeptide repeat domain protein","protein_coding"
"Pp1s93_48V6","No alias","Physcomitrella patens","aldehyde oxidase 1","protein_coding"
"Pp1s96_165V6","No alias","Physcomitrella patens","lhy protein","protein_coding"
"Pp1s96_21V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s97_287V6","No alias","Physcomitrella patens","hydroxycinnamoyl shikimate quinate hydroxycinnamoyltransferase","protein_coding"
"Pp1s98_33V6","No alias","Physcomitrella patens","dna mismatch repair protein","protein_coding"
"Pp1s9_156V6","No alias","Physcomitrella patens","minichromosome maintenance 3","protein_coding"
"Pp1s9_162V6","No alias","Physcomitrella patens","F4F15.210; PHD finger family protein [Arabidopsis thaliana]","protein_coding"
"Pp1s9_334V6","No alias","Physcomitrella patens","K1F13.7; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s9_36V6","No alias","Physcomitrella patens","molybdopterin cofactor","protein_coding"
"Pp1s9_406V6","No alias","Physcomitrella patens","F9L1.8; oxidoreductase NAD-binding domain-containing protein [Arabidopsis thaliana]","protein_coding"
"Solyc01g005600","No alias","Solanum lycopersicum","5'-adenylylsulfate reductase-like 5 (AHRD V3.3 *** APRL5_ARATH)","protein_coding"
"Solyc01g006280","No alias","Solanum lycopersicum","Formate--tetrahydrofolate ligase (AHRD V3.3 *** FTHS_SPIOL)","protein_coding"
"Solyc01g006430","No alias","Solanum lycopersicum","Fatty acid desaturase (AHRD V3.3 *** M4QSE6_9ERIC)","protein_coding"
"Solyc01g007850","No alias","Solanum lycopersicum","Pentatricopeptide repeat superfamily protein, putative (AHRD V3.3 *** A0A061F6E7_THECC)","protein_coding"
"Solyc01g008160","No alias","Solanum lycopersicum","Tetratricopeptide repeat-containing family protein (AHRD V3.3 *** B9HVN0_POPTR)","protein_coding"
"Solyc01g008850","No alias","Solanum lycopersicum","Non-specific serine/threonine protein kinase (AHRD V3.3 *** A0A0V0IV59_SOLCH)","protein_coding"
"Solyc01g009230","No alias","Solanum lycopersicum","sitiens","protein_coding"
"Solyc01g009610","No alias","Solanum lycopersicum","Peptidyl-prolyl cis-trans isomerase (AHRD V3.3 *** A0A0K9NN67_ZOSMR)","protein_coding"
"Solyc01g010000","No alias","Solanum lycopersicum","ACT domain containing protein, putative, expressed (AHRD V3.3 *** Q75IY1_ORYSJ)","protein_coding"
"Solyc01g014320","No alias","Solanum lycopersicum","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, putative (AHRD V3.3 *** A0A061E9R4_THECC)","protein_coding"
"Solyc01g056720","No alias","Solanum lycopersicum","small basic intrinsic protein 2.1","protein_coding"
"Solyc01g058190","No alias","Solanum lycopersicum","30S ribosomal protein S6 (AHRD V3.3 *** W9RJT9_9ROSA)","protein_coding"
"Solyc01g080210","No alias","Solanum lycopersicum","Ribonucleoside-diphosphate reductase small chain family protein (AHRD V3.3 *** B9HMC3_POPTR)","protein_coding"
"Solyc01g080250","No alias","Solanum lycopersicum","BTB-POZ and MATH domain 2 (AHRD V3.3 *** AT3G06190.1)","protein_coding"
"Solyc01g080460","No alias","Solanum lycopersicum","pyruvate orthophosphate dikinase (AHRD V3.3 *** AT4G15530.6)","protein_coding"
"Solyc01g081480","No alias","Solanum lycopersicum","alpha/beta-Hydrolases superfamily protein (AHRD V3.3 *** AT5G17670.1)","protein_coding"
"Solyc01g081490","No alias","Solanum lycopersicum","Sigma factor (AHRD V3.3 *** A0A0G2STP3_9ROSI)","protein_coding"
"Solyc01g086950","No alias","Solanum lycopersicum","SWIB/MDM2 and Plus-3 and GYF domain-containing protein (AHRD V3.3 *** AT5G08430.2)","protein_coding"
"Solyc01g087440","No alias","Solanum lycopersicum","Protein EFR3 like B (AHRD V3.3 *-* A0A0B2PVI4_GLYSO)","protein_coding"
"Solyc01g087450","No alias","Solanum lycopersicum","Protein EFR3 B (AHRD V3.3 *** A0A1D1ZEH0_9ARAE)","protein_coding"
"Solyc01g087690","No alias","Solanum lycopersicum","Sigma factor (AHRD V3.3 *** A0A0G2STQ4_9ROSI)","protein_coding"
"Solyc01g089870","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9GP78_POPTR)","protein_coding"
"Solyc01g090940","No alias","Solanum lycopersicum","Phosphatidate cytidylyltransferase (AHRD V3.3 *** K4AZ34_SOLLC),Pfam:PF01148","protein_coding"
"Solyc01g091550","No alias","Solanum lycopersicum","Acyl-CoA thioesterase, putative (AHRD V3.3 *** B9RDM1_RICCO)","protein_coding"
"Solyc01g094210","No alias","Solanum lycopersicum","NAD(P)-binding Rossmann-fold superfamily protein (AHRD V3.3 *** AT3G61220.1)","protein_coding"
"Solyc01g095030","No alias","Solanum lycopersicum","Myb family transcription factor family protein (AHRD V3.3 *** B9I8P3_POPTR)","protein_coding"
"Solyc01g095240","No alias","Solanum lycopersicum","LOW QUALITY:Membrane-associated kinase regulator-like protein, putative (AHRD V3.3 *** A0A072U9K3_MEDTR)","protein_coding"
"Solyc01g095570","No alias","Solanum lycopersicum","Mitochondrial substrate carrier family protein (AHRD V3.3 *** B9I8V0_POPTR)","protein_coding"
"Solyc01g095680","No alias","Solanum lycopersicum","Ubiquitin carboxyl-terminal hydrolase family protein (AHRD V3.3 *-* A0A061DSR6_THECC)","protein_coding"
"Solyc01g095900","No alias","Solanum lycopersicum","Tetratricopeptide repeat (TPR)-like superfamily protein (AHRD V3.3 *** AT1G01320.3)","protein_coding"
"Solyc01g096230","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT2G46620.1)","protein_coding"
"Solyc01g096630","No alias","Solanum lycopersicum","Dentin sialophosphoprotein-related, putative isoform 1 (AHRD V3.3 --* A0A061E964_THECC)","protein_coding"
"Solyc01g096660","No alias","Solanum lycopersicum","PSII-associated proline-rich protein","protein_coding"
"Solyc01g097920","No alias","Solanum lycopersicum","Cysteine synthase (AHRD V3.3 *** K4B0H9_SOLLC)","protein_coding"
"Solyc01g098030","No alias","Solanum lycopersicum","Hydroxyproline-rich glycoprotein family protein, putative isoform 1 (AHRD V3.3 *** A0A061GYH3_THECC)","protein_coding"
"Solyc01g098090","No alias","Solanum lycopersicum","meloidogyne-induced giant cell protein DB214","protein_coding"
"Solyc01g098150","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103YF58_CYNCS)","protein_coding"
"Solyc01g099560","No alias","Solanum lycopersicum","NAD(P)-binding rossmann-fold protein (AHRD V3.3 *** G7LBT9_MEDTR)","protein_coding"
"Solyc01g102610","No alias","Solanum lycopersicum","Ferric reduction oxidase 7 (AHRD V3.3 *** W9RRH7_9ROSA)","protein_coding"
"Solyc01g102750","No alias","Solanum lycopersicum","alfin1-like PHD domain-containing protein","protein_coding"
"Solyc01g103720","No alias","Solanum lycopersicum","Ribosome biogenesis protein BOP1 homolog (AHRD V3.3 *** M1CBT7_SOLTU)","protein_coding"
"Solyc01g103760","No alias","Solanum lycopersicum","magnesium transporter NIPA (DUF803) (AHRD V3.3 *** AT4G13800.8)","protein_coding"
"Solyc01g104580","No alias","Solanum lycopersicum","Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (AHRD V3.3 *** AT2G01080.1)","protein_coding"
"Solyc01g104910","No alias","Solanum lycopersicum","Loricrin-like protein (AHRD V3.3 *** A0A072UZF2_MEDTR)","protein_coding"
"Solyc01g106060","No alias","Solanum lycopersicum","Class I glutamine amidotransferase (AHRD V3.3 *** G7K286_MEDTR)","protein_coding"
"Solyc01g106790","No alias","Solanum lycopersicum","Tubulin alpha-6 chain, putative (AHRD V3.3 *** A0A072VQC5_MEDTR)","protein_coding"
"Solyc01g108390","No alias","Solanum lycopersicum","Proteinase inhibitor (AHRD V3.3 *** A0A0R4WFE3_TOBAC)","protein_coding"
"Solyc01g109980","No alias","Solanum lycopersicum","BEL1-related homeotic protein 30 (AHRD V3.3 *** Q8LLD8_SOLTU)","protein_coding"
"Solyc01g110180","No alias","Solanum lycopersicum","B-box zinc finger family protein (AHRD V3.3 *** AT4G39070.1)","protein_coding"
"Solyc01g110520","No alias","Solanum lycopersicum","Amidophosphoribosyltransferase, putative (AHRD V3.3 *** B9RG60_RICCO)","protein_coding"
"Solyc01g110940","No alias","Solanum lycopersicum","SAUR-like auxin-responsive protein family (AHRD V3.3 *** AT4G38840.1)","protein_coding"
"Solyc01g111510","No alias","Solanum lycopersicum","Ascorbate peroxidase (AHRD V3.3 *** J9Z324_CAPFR)","protein_coding"
"Solyc01g111620","No alias","Solanum lycopersicum","high-affinity nickel-transport family protein (AHRD V3.3 *** AT2G16800.1)","protein_coding"
"Solyc01g111750","No alias","Solanum lycopersicum","Chaperone DnaJ (AHRD V3.3 *** A0A0B0PUN1_GOSAR)","protein_coding"
"Solyc01g111760","No alias","Solanum lycopersicum","ATP synthase subunit beta vacuolar, putative (AHRD V3.3 *-* B9R8F3_RICCO)","protein_coding"
"Solyc02g005180","No alias","Solanum lycopersicum","Sugar facilitator protein 2","protein_coding"
"Solyc02g020910","No alias","Solanum lycopersicum","Myosin-related family protein (AHRD V3.3 *** B9H5P2_POPTR)","protein_coding"
"Solyc02g021590","No alias","Solanum lycopersicum","Receptor protein kinase, putative (AHRD V3.3 *** B9T7R3_RICCO)","protein_coding"
"Solyc02g065370","No alias","Solanum lycopersicum","UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase (AHRD V3.3 *** A0A0B0MSS3_GOSAR)","protein_coding"
"Solyc02g068130","No alias","Solanum lycopersicum","Mitochondrial import receptor subunit TOM20 (AHRD V3.3 *** TOM20_SOLTU)","protein_coding"
"Solyc02g068280","No alias","Solanum lycopersicum","subtilisin-like protein","protein_coding"
"Solyc02g069180","No alias","Solanum lycopersicum","SBP (S-ribonuclease binding protein) family protein (AHRD V3.3 *** AT3G12920.1)","protein_coding"
"Solyc02g069320","No alias","Solanum lycopersicum","LOW QUALITY:Mitochondrial transcription termination factor family protein, putative (AHRD V3.3 *** A0A061GDK1_THECC)","protein_coding"
"Solyc02g069860","No alias","Solanum lycopersicum","Nuclear transcription factor Y subunit (AHRD V3.3 *-* A0A0K9P8V1_ZOSMR)","protein_coding"
"Solyc02g070230","No alias","Solanum lycopersicum","Nucleic acid binding protein, putative (AHRD V3.3 *-* B9SAY5_RICCO)","protein_coding"
"Solyc02g070490","No alias","Solanum lycopersicum","Alpha/beta hydrolase, putative (AHRD V3.3 *** B9RYL3_RICCO)","protein_coding"
"Solyc02g070910","No alias","Solanum lycopersicum","Ontology_term=GO:0004675","protein_coding"
"Solyc02g070930","No alias","Solanum lycopersicum","Cytochrome b6-f complex subunit 4 (AHRD V3.3 --* PETD_SPIMX)","protein_coding"
"Solyc02g071380","No alias","Solanum lycopersicum","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (AHRD V3.3 *** AT1G17010.1)","protein_coding"
"Solyc02g072540","No alias","Solanum lycopersicum","Non-specific serine/threonine protein kinase (AHRD V3.3 *** A0A0V0IFU0_SOLCH)","protein_coding"
"Solyc02g077680","No alias","Solanum lycopersicum","Alpha-1,4 glucan phosphorylase (AHRD V3.3 *** K4B8Z3_SOLLC)","protein_coding"
"Solyc02g077910","No alias","Solanum lycopersicum","Mitochondrial carrier protein, expressed (AHRD V3.3 *** A0A0K9PZC5_ZOSMR)","protein_coding"
"Solyc02g078330","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9RW07_RICCO)","protein_coding"
"Solyc02g078360","No alias","Solanum lycopersicum","Glutaredoxin (AHRD V3.3 *** A0A124SB49_CYNCS)","protein_coding"
"Solyc02g078630","No alias","Solanum lycopersicum","LOW QUALITY:Fiber protein Fb34 (AHRD V3.3 *** A0A0A0L071_CUCSA)","protein_coding"
"Solyc02g079130","No alias","Solanum lycopersicum","Protein translocase subunit SecA 1 (AHRD V3.3 *** A0A199UM53_ANACO)","protein_coding"
"Solyc02g081550","No alias","Solanum lycopersicum","LeftsH6FtsH protease","protein_coding"
"Solyc02g081910","No alias","Solanum lycopersicum","DNA topoisomerase (AHRD V3.3 *** K4BA61_SOLLC)","protein_coding"
"Solyc02g082120","No alias","Solanum lycopersicum","DNA-3-methyladenine glycosylase, putative (AHRD V3.3 *** B9SVU2_RICCO)","protein_coding"
"Solyc02g083540","No alias","Solanum lycopersicum","MID1-complementing activity-like protein (AHRD V3.3 *** G7JXK8_MEDTR)","protein_coding"
"Solyc02g086440","No alias","Solanum lycopersicum","F-box/LRR protein (AHRD V3.3 *** A0A072TZ55_MEDTR)","protein_coding"
"Solyc02g087200","No alias","Solanum lycopersicum","U-box domain-containing protein 40 (AHRD V3.3 *** PUB40_ARATH)","protein_coding"
"Solyc02g087250","No alias","Solanum lycopersicum","Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic (AHRD V3.3 *** A0A0B0PGC2_GOSAR)","protein_coding"
"Solyc02g089350","No alias","Solanum lycopersicum","Gibberellin-regulated family protein (AHRD V3.3 *** A0A061EVH9_THECC)","protein_coding"
"Solyc02g089610","No alias","Solanum lycopersicum","S-adenosylmethionine decarboxylase 2","protein_coding"
"Solyc02g090020","No alias","Solanum lycopersicum","stress regulated protein AY873991","protein_coding"
"Solyc02g090260","No alias","Solanum lycopersicum","Golgin candidate 6 isoform 2 (AHRD V3.3 *** A0A061DMU6_THECC)","protein_coding"
"Solyc02g090290","No alias","Solanum lycopersicum","Cytochrome P450 (AHRD V3.3 *** Q8H0I6_PETHY)","protein_coding"
"Solyc02g091110","No alias","Solanum lycopersicum","Histone chaperone (AHRD V3.3 *** A9TVI5_PHYPA)","protein_coding"
"Solyc02g092320","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc02g092700","No alias","Solanum lycopersicum","DUF1230 family protein (DUF1230) (AHRD V3.3 *** AT5G67370.1)","protein_coding"
"Solyc02g092970","No alias","Solanum lycopersicum","ADP-ribosylation factor (AHRD V3.3 *** ARF_VIGUN)","protein_coding"
"Solyc02g093220","No alias","Solanum lycopersicum","F-box family protein (AHRD V3.3 *** D7MKT1_ARALL)","protein_coding"
"Solyc02g093460","No alias","Solanum lycopersicum","tRNA-pseudouridine synthase, putative (AHRD V3.3 *** B9S669_RICCO)","protein_coding"
"Solyc02g094120","No alias","Solanum lycopersicum","sulfite oxidase","protein_coding"
"Solyc03g005320","No alias","Solanum lycopersicum","3-ketoacyl-CoA synthase (AHRD V3.3 *** M1A6B6_SOLTU)","protein_coding"
"Solyc03g005600","No alias","Solanum lycopersicum","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (AHRD V3.3 *** AT1G04430.3)","protein_coding"
"Solyc03g005900","No alias","Solanum lycopersicum","GDSL-lipase protein (AHRD V3.3 *** Q08ET5_CAPAN)","protein_coding"
"Solyc03g006100","No alias","Solanum lycopersicum","Receptor-kinase, putative (AHRD V3.3 *** B9RVA8_RICCO)","protein_coding"
"Solyc03g006250","No alias","Solanum lycopersicum","GDSL esterase/lipase (AHRD V3.3 *** A0A0B2QGL7_GLYSO)","protein_coding"
"Solyc03g007220","No alias","Solanum lycopersicum","Membrane receptor-like protein 1 (AHRD V3.3 *-* B3TJG2_CAPAN)","protein_coding"
"Solyc03g007370","No alias","Solanum lycopersicum","Sigma factor (AHRD V3.3 *** A0A0G2STU5_9ROSI)","protein_coding"
"Solyc03g007430","No alias","Solanum lycopersicum","Mitochondrial carrier protein, putative (AHRD V3.3 *** B9RIM4_RICCO)","protein_coding"
"Solyc03g007590","No alias","Solanum lycopersicum","Pentatricopeptide repeat (PPR) superfamily protein (AHRD V3.3 *-* AT3G49140.1)","protein_coding"
"Solyc03g026120","No alias","Solanum lycopersicum","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (AHRD V3.3 *** AT4G00750.1)","protein_coding"
"Solyc03g034400","No alias","Solanum lycopersicum","Protein DETOXIFICATION (AHRD V3.3 *** K4BFW0_SOLLC)","protein_coding"
"Solyc03g044220","No alias","Solanum lycopersicum","F-box protein (AHRD V3.3 *** W9R4Y4_9ROSA)","protein_coding"
"Solyc03g044620","No alias","Solanum lycopersicum","Transmembrane protein 131-like (AHRD V3.3 *** A0A0B2S5T7_GLYSO)","protein_coding"
"Solyc03g045070","No alias","Solanum lycopersicum","ammonium transporter AF118858","protein_coding"
"Solyc03g051770","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc03g059260","No alias","Solanum lycopersicum","Carboxyl-terminal-processing protease (AHRD V3.3 *** A0A151QQ57_CAJCA)","protein_coding"
"Solyc03g062650","No alias","Solanum lycopersicum","thyroid adenoma-associated-like protein (AHRD V3.3 *** AT3G55160.3)","protein_coding"
"Solyc03g063730","No alias","Solanum lycopersicum","Protein DETOXIFICATION (AHRD V3.3 *** M1AVC8_SOLTU)","protein_coding"
"Solyc03g071590","No alias","Solanum lycopersicum","chloroplast malate dehydrogenase","protein_coding"
"Solyc03g071690","No alias","Solanum lycopersicum","Non-symbiotic hemoglobin 1 (AHRD V3.3 *** A0A199VNT0_ANACO)","protein_coding"
"Solyc03g071710","No alias","Solanum lycopersicum","Cyclin-dependent protein kinase inhibitor Siamese (AHRD V3.3 *** M4M6N3_GOSAR)","protein_coding"
"Solyc03g080010","No alias","Solanum lycopersicum","DNA mismatch repair protein MutS2-like (AHRD V3.3 *** Q9LVW1_ARATH)","protein_coding"
"Solyc03g082510","No alias","Solanum lycopersicum","Small auxin up-regulated RNA35","protein_coding"
"Solyc03g082560","No alias","Solanum lycopersicum","NAD(P)-linked oxidoreductase superfamily protein (AHRD V3.3 *** AT5G53580.1)","protein_coding"
"Solyc03g082850","No alias","Solanum lycopersicum","3'-5' exonuclease domain-containing protein (AHRD V3.3 *** A0A061G214_THECC)","protein_coding"
"Solyc03g082990","No alias","Solanum lycopersicum","Tetratricopeptide repeat (TPR)-like superfamily protein (AHRD V3.3 *** AT5G53080.1)","protein_coding"
"Solyc03g083960","No alias","Solanum lycopersicum","Trehalose 6-phosphate phosphatase (AHRD V3.3 *** K4BIH1_SOLLC)","protein_coding"
"Solyc03g096820","No alias","Solanum lycopersicum","Aluminum-activated malate transporter-like (AHRD V3.3 *** K4BJA0_SOLLC)","protein_coding"
"Solyc03g097000","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A124SAS7_CYNCS)","protein_coding"
"Solyc03g097270","No alias","Solanum lycopersicum","cystatin 9","protein_coding"
"Solyc03g097320","No alias","Solanum lycopersicum","Sigma factor (AHRD V3.3 *** Q9SLX4_TOBAC)","protein_coding"
"Solyc03g097370","No alias","Solanum lycopersicum","DNA-binding SMUBP-2 (AHRD V3.3 *** A0A0B0N417_GOSAR)","protein_coding"
"Solyc03g111120","No alias","Solanum lycopersicum","Malate synthase (AHRD V3.3 *** M1B824_SOLTU)","protein_coding"
"Solyc03g111130","No alias","Solanum lycopersicum","Malate synthase (AHRD V3.3 *** K4BJX6_SOLLC)","protein_coding"
"Solyc03g111140","No alias","Solanum lycopersicum","Malate synthase (AHRD V3.3 *** K4BJX7_SOLLC)","protein_coding"
"Solyc03g111550","No alias","Solanum lycopersicum","GDSL esterase/lipase (AHRD V3.3 *** A0A0B2PXL8_GLYSO)","protein_coding"
"Solyc03g111830","No alias","Solanum lycopersicum","Protein-L-isoaspartate O-methyltransferase (AHRD V3.3 *** K4BK44_SOLLC)","protein_coding"
"Solyc03g112760","No alias","Solanum lycopersicum","transmembrane protein (AHRD V3.3 *** AT3G48200.1)","protein_coding"
"Solyc03g113100","No alias","Solanum lycopersicum","Ubiquitin-conjugating enzyme (AHRD V3.3 *** A0A072TRF9_MEDTR)","protein_coding"
"Solyc03g113990","No alias","Solanum lycopersicum","Thiol-disulfide oxidoreductase DCC (AHRD V3.3 *** A0A072UZ36_MEDTR)","protein_coding"
"Solyc03g115540","No alias","Solanum lycopersicum","bHLH transcription factor 024","protein_coding"
"Solyc03g116570","No alias","Solanum lycopersicum","Thiol-disulfide oxidoreductase DCC (AHRD V3.3 *** A0A0K9PRB5_ZOSMR)","protein_coding"
"Solyc03g117080","No alias","Solanum lycopersicum","Mitochondrial glycoprotein family protein (AHRD V3.3 *** AT1G15870.1)","protein_coding"
"Solyc03g117300","No alias","Solanum lycopersicum","Nodulin-like / Major Facilitator Superfamily protein (AHRD V3.3 *** A0A0K9Q4D1_ZOSMR)","protein_coding"
"Solyc03g117560","No alias","Solanum lycopersicum","Blue copper-like protein (AHRD V3.3 *** B8Y8A0_GOSHI)","protein_coding"
"Solyc03g117870","No alias","Solanum lycopersicum","4-coumarate--CoA ligase","protein_coding"
"Solyc03g118120","No alias","Solanum lycopersicum","Transferase, transferring glycosyl groups, putative (AHRD V3.3 *** B9RG20_RICCO)","protein_coding"
"Solyc03g118340","No alias","Solanum lycopersicum","Chloroplast ATP-dependent Clp protease chaperone protein (AHRD V3.3 *** A0A088FCE7_NICBE)","protein_coding"
"Solyc03g118840","No alias","Solanum lycopersicum","RING/U-box superfamily protein (AHRD V3.3 *** AT1G73760.1)","protein_coding"
"Solyc03g119140","No alias","Solanum lycopersicum","MAP kinase kinase kinase 30","protein_coding"
"Solyc03g119480","No alias","Solanum lycopersicum","translocase subunit seca (AHRD V3.3 *** AT1G68490.1)","protein_coding"
"Solyc03g120350","No alias","Solanum lycopersicum","N-alpha-acetyltransferase 16, NatA auxiliary subunit (AHRD V3.3 *** A0A0B2P106_GLYSO)","protein_coding"
"Solyc03g120510","No alias","Solanum lycopersicum","LOW QUALITY:Pentatricopeptide repeat-containing protein family (AHRD V3.3 *** A0A151SH53_CAJCA)","protein_coding"
"Solyc03g120680","No alias","Solanum lycopersicum","Glyoxylate reductase (AHRD V3.3 *** A0A1D1YDH1_9ARAE)","protein_coding"
"Solyc03g121120","No alias","Solanum lycopersicum","DNA repair protein RadA-like protein (AHRD V3.3 *** AT5G50340.3)","protein_coding"
"Solyc03g121560","No alias","Solanum lycopersicum","AT1G17665-like protein (AHRD V3.3 *** A0A0G4AP21_9ROSI)","protein_coding"
"Solyc03g121800","No alias","Solanum lycopersicum","copz1 nonclathrin coat protein zeta1-COP","protein_coding"
"Solyc04g005630","No alias","Solanum lycopersicum","Mitochondrial transcription termination factor family protein (AHRD V3.3 *** AT4G02990.2)","protein_coding"
"Solyc04g005650","No alias","Solanum lycopersicum","Mitochondrial substrate carrier family protein (AHRD V3.3 *** A0A061FTE7_THECC)","protein_coding"
"Solyc04g007110","No alias","Solanum lycopersicum","Transmembrane protein, putative (AHRD V3.3 *** G7JZC5_MEDTR)","protein_coding"
"Solyc04g007640","No alias","Solanum lycopersicum","U-box domain-containing protein 10 (AHRD V3.3 *** A0A061E7I3_THECC)","protein_coding"
"Solyc04g008050","No alias","Solanum lycopersicum","Two-component response regulator (AHRD V3.3 *** W9QMB4_9ROSA)","protein_coding"
"Solyc04g008110","No alias","Solanum lycopersicum","Histidine kinase (AHRD V3.3 *** Q2ACB8_MAIZE)","protein_coding"
"Solyc04g008740","No alias","Solanum lycopersicum","Pyruvate kinase (AHRD V3.3 *** K4BP30_SOLLC)","protein_coding"
"Solyc04g008840","No alias","Solanum lycopersicum","Protein FRIGIDA, putative (AHRD V3.3 *** B9SG32_RICCO)","protein_coding"
"Solyc04g008990","No alias","Solanum lycopersicum","Riboflavin biosynthesis protein ribF (AHRD V3.3 *** W9RX51_9ROSA)","protein_coding"
"Solyc04g010080","No alias","Solanum lycopersicum","Meiotically up-regulated protein 71-like protein (AHRD V3.3 *** G7KWG3_MEDTR)","protein_coding"
"Solyc04g012040","No alias","Solanum lycopersicum","26S proteasome non-ATPase regulatory subunit (AHRD V3.3 *** A0A0K9PTB7_ZOSMR)","protein_coding"
"Solyc04g012160","No alias","Solanum lycopersicum","SNF1-related kinase","protein_coding"
"Solyc04g015750","No alias","Solanum lycopersicum","Magnesium chelatase H subunit (AHRD V3.3 *** F8SPG3_CAMSI)","protein_coding"
"Solyc04g015950","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9H9T6_POPTR)","protein_coding"
"Solyc04g024520","No alias","Solanum lycopersicum","Protein TSSC4 (AHRD V3.3 *** A0A0B0PXY2_GOSAR)","protein_coding"
"Solyc04g025290","No alias","Solanum lycopersicum","Peptide chain release factor 2 (AHRD V3.3 *** W9RF34_9ROSA)","protein_coding"
"Solyc04g045580","No alias","Solanum lycopersicum","phosphoribosylformylglycinamidine synthase (AHRD V3.3 *** AT1G27385.1)","protein_coding"
"Solyc04g045590","No alias","Solanum lycopersicum","Alpha-ketoglutarate-dependent dioxygenase alkB (AHRD V3.3 *** G5DX61_SILLA)","protein_coding"
"Solyc04g049360","No alias","Solanum lycopersicum","aminodeoxychorismate synthase/glutamine amidotransferase","protein_coding"
"Solyc04g049380","No alias","Solanum lycopersicum","Protein kinase superfamily protein (AHRD V3.3 *** AT2G39190.2)","protein_coding"
"Solyc04g049390","No alias","Solanum lycopersicum","Kinase superfamily protein isoform 1 (AHRD V3.3 *-* A0A061FUY1_THECC)","protein_coding"
"Solyc04g050040","No alias","Solanum lycopersicum","mitochondrial substrate carrier family protein (AHRD V3.3 *** AT2G35800.1)","protein_coding"
"Solyc04g050170","No alias","Solanum lycopersicum","Clavata1 receptor kinase family protein (AHRD V3.3 *** B9I5Q8_POPTR)","protein_coding"
"Solyc04g050550","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9T3S4_RICCO)","protein_coding"
"Solyc04g050810","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc04g053010","No alias","Solanum lycopersicum","SAUR-like auxin-responsive protein family, putative (AHRD V3.3 *** A0A061E5G9_THECC)","protein_coding"
"Solyc04g054190","No alias","Solanum lycopersicum","ABC1 protein (AHRD V3.3 *** D2XP29_MAIZE)","protein_coding"
"Solyc04g054890","No alias","Solanum lycopersicum","Acyl-coenzyme A oxidase (AHRD V3.3 *** K4BSN7_SOLLC)","protein_coding"
"Solyc04g057970","No alias","Solanum lycopersicum","ATPase, V1 complex, subunit B protein (AHRD V3.3 --* AT4G38510.5)","protein_coding"
"Solyc04g072740","No alias","Solanum lycopersicum","Sulfate transporter, putative (AHRD V3.3 *** B9RJF7_RICCO)","protein_coding"
"Solyc04g077590","No alias","Solanum lycopersicum","Protein PHLOEM PROTEIN 2-LIKE A10 (AHRD V3.3 *** P2A10_ARATH)","protein_coding"
"Solyc04g078130","No alias","Solanum lycopersicum","Syntaxin-61-like protein (AHRD V3.3 *** A0A0B0PXY6_GOSAR)","protein_coding"
"Solyc04g080040","No alias","Solanum lycopersicum","Heat shock protein binding protein, putative (AHRD V3.3 *** B9R7Q9_RICCO)","protein_coding"
"Solyc04g080310","No alias","Solanum lycopersicum","DNA repair metallo-beta-lactamase family protein (AHRD V3.3 --* AT3G26680.4)","protein_coding"
"Solyc04g082660","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc04g083010","No alias","Solanum lycopersicum","ABC1-like kinase 3","protein_coding"
"Solyc05g005000","No alias","Solanum lycopersicum","alpha/beta-Hydrolases superfamily protein (AHRD V3.3 *** AT1G10740.4)","protein_coding"
"Solyc05g006120","No alias","Solanum lycopersicum","DNA polymerase lambda (AHRD V3.3 *** DPOLL_ARATH)","protein_coding"
"Solyc05g006130","No alias","Solanum lycopersicum","RNA helicase DEAD17","protein_coding"
"Solyc05g006460","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9S5H2_RICCO)","protein_coding"
"Solyc05g006490","No alias","Solanum lycopersicum","TPX2 (Targeting protein for Xklp2) family protein, putative (AHRD V3.3 *-* G7K5M5_MEDTR)","protein_coding"
"Solyc05g006530","No alias","Solanum lycopersicum","DEAD-box ATP-dependent RNA helicase ISE2 (AHRD V3.3 *** G7K5N2_MEDTR)","protein_coding"
"Solyc05g006650","No alias","Solanum lycopersicum","bHLH transcription factor 036","protein_coding"
"Solyc05g007800","No alias","Solanum lycopersicum","Negatively light-regulated protein, putative (AHRD V3.3 *** Q5NRN5_SOLDE)","protein_coding"
"Solyc05g007830","No alias","Solanum lycopersicum","expansin12","protein_coding"
"Solyc05g007840","No alias","Solanum lycopersicum","Mitochondrial transcription termination factor family protein (AHRD V3.3 *** AT2G03050.2)","protein_coding"
"Solyc05g007850","No alias","Solanum lycopersicum","bacterial spot disease resistance protein 4","protein_coding"
"Solyc05g007910","No alias","Solanum lycopersicum","50S ribosomal L18-like protein (AHRD V3.3 *** G7KFC6_MEDTR)","protein_coding"
"Solyc05g008070","No alias","Solanum lycopersicum","Disease resistance protein (AHRD V3.3 *** A0A103XDQ0_CYNCS)","protein_coding"
"Solyc05g008080","No alias","Solanum lycopersicum","NOD26-like intrinsic protein 4.2","protein_coding"
"Solyc05g008920","No alias","Solanum lycopersicum","DUF789 family protein (AHRD V3.3 *** G7KMK8_MEDTR)","protein_coding"
"Solyc05g009890","No alias","Solanum lycopersicum","LOW QUALITY:Eukaryotic aspartyl protease family protein (AHRD V3.3 *** AT3G25700.1)","protein_coding"
"Solyc05g012190","No alias","Solanum lycopersicum","cell division cycle 48 (AHRD V3.3 *** AT3G09840.1)","protein_coding"
"Solyc05g012200","No alias","Solanum lycopersicum","Asparagine synthetase, putative (AHRD V3.3 *** B9REC9_RICCO)","protein_coding"
"Solyc05g013680","No alias","Solanum lycopersicum","GDSL esterase/lipase (AHRD V3.3 *** W9RN10_9ROSA)","protein_coding"
"Solyc05g015640","No alias","Solanum lycopersicum","Ciliary neurotrophic factor (AHRD V3.3 *** A0A0B0PI91_GOSAR)","protein_coding"
"Solyc05g016230","No alias","Solanum lycopersicum","Protein BREAST CANCER SUSCEPTIBILITY 1-like protein (AHRD V3.3 *** W9QZP3_9ROSA)","protein_coding"
"Solyc05g016690","No alias","Solanum lycopersicum","Nudix hydrolase (AHRD V3.3 *** A0A061GGI6_THECC)","protein_coding"
"Solyc05g018130","No alias","Solanum lycopersicum","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (AHRD V3.3 *** AT1G35190.1)","protein_coding"
"Solyc05g018880","No alias","Solanum lycopersicum","Lysine-specific histone demethylase 1 like 1 (AHRD V3.3 *-* A0A0B2PY52_GLYSO)","protein_coding"
"Solyc05g024260","No alias","Solanum lycopersicum","Bidirectional sugar transporter SWEET (AHRD V3.3 *** K4BZR4_SOLLC)","protein_coding"
"Solyc05g025890","No alias","Solanum lycopersicum","Acyl-CoA N-acyltransferases (NAT) superfamily protein (AHRD V3.3 *** AT2G06025.6)","protein_coding"
"Solyc05g041200","No alias","Solanum lycopersicum","4-hydroxyphenylpyruvate dioxygenase (AHRD V3.3 *** K4C0A1_SOLLC)","protein_coding"
"Solyc05g050230","No alias","Solanum lycopersicum","Ubiquitin conjugating enzyme E2 (AHRD V3.3 *** A5YVL3_ADICA)","protein_coding"
"Solyc05g050610","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc05g050630","No alias","Solanum lycopersicum","Tetratricopeptide repeat (TPR)-like superfamily protein (AHRD V3.3 *** AT1G01320.3)","protein_coding"
"Solyc05g050750","No alias","Solanum lycopersicum","Calcium-binding protein (AHRD V3.3 *** Q9SCA1_LOTJA)","protein_coding"
"Solyc05g051850","No alias","Solanum lycopersicum","putative myo-inositol-1-phosphatase","protein_coding"
"Solyc05g054600","No alias","Solanum lycopersicum","Methionyl-tRNA synthetase family protein (AHRD V3.3 *** B9HTK5_POPTR)","protein_coding"
"Solyc05g054640","No alias","Solanum lycopersicum","2-oxoglutarate dehydrogenase E1 component family protein (AHRD V3.3 *** B9HM58_POPTR)","protein_coding"
"Solyc05g054960","No alias","Solanum lycopersicum","Peroxisome biogenesis protein 12 (AHRD V3.3 *** K4C2H2_SOLLC)","protein_coding"
"Solyc05g055790","No alias","Solanum lycopersicum","Protein phosphatase-2c, putative (AHRD V3.3 *** B9RM68_RICCO)","protein_coding"
"Solyc05g055940","No alias","Solanum lycopersicum","Myb-like transcription factor family protein (AHRD V3.3 *** G7KXD8_MEDTR)","protein_coding"
"Solyc05g056300","No alias","Solanum lycopersicum","Thioredoxin (AHRD V3.3 *** A0A103YEZ4_CYNCS)","protein_coding"
"Solyc06g009260","No alias","Solanum lycopersicum","Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (AHRD V3.3 --* AT3G14980.6)","protein_coding"
"Solyc06g010030","No alias","Solanum lycopersicum","MLO-like protein (AHRD V3.3 *-* K4C430_SOLLC)","protein_coding"
"Solyc06g035600","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** A0A061FZU0_THECC)","protein_coding"
"Solyc06g035800","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc06g036260","No alias","Solanum lycopersicum","beta-carotene hydroxylase-1","protein_coding"
"Solyc06g036330","No alias","Solanum lycopersicum","LOW QUALITY:Ornithine cyclodeaminase/mu-crystallin (AHRD V3.3 *** B7FJU0_MEDTR)","protein_coding"
"Solyc06g036340","No alias","Solanum lycopersicum","Pentatricopeptide repeat (PPR) superfamily protein (AHRD V3.3 *** AT3G49140.1)","protein_coding"
"Solyc06g036580","No alias","Solanum lycopersicum","U4/U6 small nuclear ribonucleoprotein Prp3 (AHRD V3.3 *** A0A0B2RPV3_GLYSO)","protein_coding"
"Solyc06g048940","No alias","Solanum lycopersicum","Transmembrane 9 superfamily member (AHRD V3.3 *** K4C5E0_SOLLC)","protein_coding"
"Solyc06g053490","No alias","Solanum lycopersicum","FAM136A-like protein (DUF842) (AHRD V3.3 *** AT2G31725.1)","protein_coding"
"Solyc06g053830","No alias","Solanum lycopersicum","auxin-regulated IAA7","protein_coding"
"Solyc06g053840","No alias","Solanum lycopersicum","auxin-regulated IAA4","protein_coding"
"Solyc06g054620","No alias","Solanum lycopersicum","Zinc finger transcription factor 43","protein_coding"
"Solyc06g060170","No alias","Solanum lycopersicum","Pectin lyase-like superfamily protein (AHRD V3.3 *** AT4G33440.1)","protein_coding"
"Solyc06g060250","No alias","Solanum lycopersicum","Aldehyde dehydrogenase (AHRD V3.3 *** K4C6K6_SOLLC)","protein_coding"
"Solyc06g060310","No alias","Solanum lycopersicum","Chlorophyllide a oxygenase (AHRD V3.3 *** W9SD87_9ROSA)","protein_coding"
"Solyc06g060620","No alias","Solanum lycopersicum","Nitrate transporter (AHRD V3.3 *** Q852P7_TOBAC)","protein_coding"
"Solyc06g060670","No alias","Solanum lycopersicum","Arginine N-methyltransferase family protein (AHRD V3.3 *** B9GYA9_POPTR)","protein_coding"
"Solyc06g064550","No alias","Solanum lycopersicum","Aspartokinase-homoserine dehydrogenase (AHRD V3.3 *** O63067_SOYBN)","protein_coding"
"Solyc06g066670","No alias","Solanum lycopersicum","RNA helicase DEAH-box20","protein_coding"
"Solyc06g068290","No alias","Solanum lycopersicum","Adenylate cyclase (AHRD V3.3 *** E1AQY2_IPONI)","protein_coding"
"Solyc06g071460","No alias","Solanum lycopersicum","Exosome complex exonuclease RRP40 (AHRD V3.3 *** B7FLI0_MEDTR)","protein_coding"
"Solyc06g071470","No alias","Solanum lycopersicum","Peroxisomal membrane protein PEX14 (AHRD V3.3 *** W9RQB1_9ROSA)","protein_coding"
"Solyc06g072710","No alias","Solanum lycopersicum","Sigma factor (AHRD V3.3 *** Q9SLX3_TOBAC)","protein_coding"
"Solyc06g073290","No alias","Solanum lycopersicum","Tetrapyrrole-binding family protein (AHRD V3.3 *** B9HH58_POPTR)","protein_coding"
"Solyc06g073320","No alias","Solanum lycopersicum","GDP-L-galactose phosphorylase 1 (AHRD V3.3 *** AT4G26850.1)","protein_coding"
"Solyc06g074670","No alias","Solanum lycopersicum","UDP-apiose/xylose synthase (AHRD V3.3 *** Q2I2N3_SOLTU)","protein_coding"
"Solyc06g075000","No alias","Solanum lycopersicum","(R)-specific enoyl-CoA hydratase (AHRD V3.3 *** W9RN50_9ROSA)","protein_coding"
"Solyc06g075080","No alias","Solanum lycopersicum","Nudix family hydrolase (AHRD V3.3 *** A0A072V814_MEDTR)","protein_coding"
"Solyc06g076410","No alias","Solanum lycopersicum","sterol 4-alpha-methyl-oxidase 2-1 (AHRD V3.3 *** AT1G07420.1)","protein_coding"
"Solyc06g076900","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9HP52_POPTR)","protein_coding"
"Solyc06g083380","No alias","Solanum lycopersicum","Acyl-[acyl-carrier-protein] hydrolase (AHRD V3.3 *** K4CAJ3_SOLLC)","protein_coding"
"Solyc06g083730","No alias","Solanum lycopersicum","Nuclear transport factor 2 family protein with RNA binding domain (AHRD V3.3 *** A0A061DNP4_THECC)","protein_coding"
"Solyc07g005130","No alias","Solanum lycopersicum","alpha/beta-Hydrolases superfamily protein (AHRD V3.3 *** AT4G31020.2)","protein_coding"
"Solyc07g005240","No alias","Solanum lycopersicum","FAD-dependent oxidoreductase family protein (AHRD V3.3 *** AT2G22650.3)","protein_coding"
"Solyc07g005370","No alias","Solanum lycopersicum","Pathogenesis-related (PR)-10-related norcoclaurine synthase-like protein (AHRD V3.3 *** C3SBS5_ESCCA)","protein_coding"
"Solyc07g005390","No alias","Solanum lycopersicum","aldehyde dehydrogenase 11A3 (AHRD V3.3 *** AT2G24270.3)","protein_coding"
"Solyc07g005440","No alias","Solanum lycopersicum","Non-specific serine/threonine protein kinase (AHRD V3.3 *** K4CB16_SOLLC)","protein_coding"
"Solyc07g005510","No alias","Solanum lycopersicum","Omega-6 fatty acid desaturase (AHRD V3.3 *** U3MY72_SOLAC)","protein_coding"
"Solyc07g005680","No alias","Solanum lycopersicum","Carboxypeptidase (AHRD V3.3 *-* K4CB39_SOLLC)","protein_coding"
"Solyc07g005950","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9SQY5_RICCO)","protein_coding"
"Solyc07g006520","No alias","Solanum lycopersicum","Preprotein translocase subunit SECY, chloroplastic (AHRD V3.3 *** A0A0B2PHE6_GLYSO)","protein_coding"
"Solyc07g007050","No alias","Solanum lycopersicum","Zinc finger, SWIM-type (AHRD V3.3 *** A0A118JSI3_CYNCS)","protein_coding"
"Solyc07g007280","No alias","Solanum lycopersicum","chlororespiratory reduction 6 (AHRD V3.3 *** AT2G47910.2)","protein_coding"
"Solyc07g007980","No alias","Solanum lycopersicum","Protein kinase (AHRD V3.3 *** C6ZRY2_SOYBN)","protein_coding"
"Solyc07g008470","No alias","Solanum lycopersicum","Macrophage migration inhibitory factor family protein (AHRD V3.3 *** D7MMS4_ARALL)","protein_coding"
"Solyc07g008540","No alias","Solanum lycopersicum","chloroplast import apparatus 2 (AHRD V3.3 *** AT5G57180.2)","protein_coding"
"Solyc07g017800","No alias","Solanum lycopersicum","La-related protein 6 isoform 1 (AHRD V3.3 *** A0A061GR72_THECC)","protein_coding"
"Solyc07g032490","No alias","Solanum lycopersicum","Major facilitator superfamily protein (AHRD V3.3 *** AT2G26690.1)","protein_coding"
"Solyc07g039210","No alias","Solanum lycopersicum","PCI domain-containing 2 (AHRD V3.3 *** A0A0B0MN94_GOSAR)","protein_coding"
"Solyc07g041080","No alias","Solanum lycopersicum","Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** AT4G29830.1)","protein_coding"
"Solyc07g042400","No alias","Solanum lycopersicum","LOW QUALITY:transmembrane protein (AHRD V3.3 --* AT5G20790.2)","protein_coding"
"Solyc07g043130","No alias","Solanum lycopersicum","Phototropic-responsive NPH3 family protein (AHRD V3.3 *** AT2G30520.1)","protein_coding"
"Solyc07g045180","No alias","Solanum lycopersicum","CONSTANS-like zinc finger protein (AHRD V3.3 *** A0A023GS52_SOYBN)","protein_coding"
"Solyc07g045310","No alias","Solanum lycopersicum","Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase (AHRD V3.3 *** W9QMR3_9ROSA)","protein_coding"
"Solyc07g045570","No alias","Solanum lycopersicum","Filament-plant-like protein (AHRD V3.3 *-* A0A072VFI4_MEDTR)","protein_coding"
"Solyc07g047710","No alias","Solanum lycopersicum","Glucan endo-1,3-beta-glucosidase-like protein (AHRD V3.3 *** G7JMV2_MEDTR)","protein_coding"
"Solyc07g047940","No alias","Solanum lycopersicum","Zinc finger transcription factor 49","protein_coding"
"Solyc07g049490","No alias","Solanum lycopersicum","Ethylene Response Factor F.3","protein_coding"
"Solyc07g053360","No alias","Solanum lycopersicum","Late embryogenesis abundant domain-containing family protein (AHRD V3.3 *** B9IQP9_POPTR)","protein_coding"
"Solyc07g054290","No alias","Solanum lycopersicum","photosystem II family protein (AHRD V3.3 *** AT1G03600.1)","protein_coding"
"Solyc07g055200","No alias","Solanum lycopersicum","SlSK","protein_coding"
"Solyc07g055260","No alias","Solanum lycopersicum","DnaJ (AHRD V3.3 *** A0A126DIH0_ARAHY)","protein_coding"
"Solyc07g056240","No alias","Solanum lycopersicum","TRNA-methyltransferase (AHRD V3.3 *** A0A061DM84_THECC)","protein_coding"
"Solyc07g062170","No alias","Solanum lycopersicum","Kinase family protein (AHRD V3.3 *** D7LY50_ARALL)","protein_coding"
"Solyc07g062520","No alias","Solanum lycopersicum","Cytochrome P450 (AHRD V3.3 *** A0A124SAX2_CYNCS)","protein_coding"
"Solyc07g063120","No alias","Solanum lycopersicum","Ubiquitin ligase protein cop1, putative (AHRD V3.3 *** B9T5N2_RICCO)","protein_coding"
"Solyc07g064410","No alias","Solanum lycopersicum","Kua-ubiquitin conjugating enzyme hybrid, localization (AHRD V3.3 *** A0A103XYI2_CYNCS)","protein_coding"
"Solyc07g064870","No alias","Solanum lycopersicum","Endoglucanase (AHRD V3.3 *** M1C0J8_SOLTU)","protein_coding"
"Solyc07g065340","No alias","Solanum lycopersicum","Serine acetyltransferase (AHRD V3.3 *** Q6STL5_NICPL)","protein_coding"
"Solyc07g065630","No alias","Solanum lycopersicum","E3 ubiquitin-protein ligase UPL1 (AHRD V3.3 *** W9QFS0_9ROSA)","protein_coding"
"Solyc07g066390","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103Y4I4_CYNCS)","protein_coding"
"Solyc07g066600","No alias","Solanum lycopersicum","phosphoglycerate kinase (AHRD V3.3 *** AT1G79550.2)","protein_coding"
"Solyc08g005390","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103XWV8_CYNCS)","protein_coding"
"Solyc08g006690","No alias","Solanum lycopersicum","Plant invertase/pectin methylesterase inhibitor superfamily protein, putative (AHRD V3.3 *** A0A061DYJ0_THECC)","protein_coding"
"Solyc08g013670","No alias","Solanum lycopersicum","photosystem I reaction center subunit","protein_coding"
"Solyc08g014440","No alias","Solanum lycopersicum","BTB/POZ and TAZ domain protein (AHRD V3.3 *** G7K3T4_MEDTR)","protein_coding"
"Solyc08g015780","No alias","Solanum lycopersicum","Ankyrin repeat family protein (AHRD V3.3 *** AT3G59910.2)","protein_coding"
"Solyc08g015990","No alias","Solanum lycopersicum","Golgi to ER traffic 4 (AHRD V3.3 *** A0A0B0NU26_GOSAR)","protein_coding"
"Solyc08g044390","No alias","Solanum lycopersicum","LOW QUALITY:Fasciclin-like arabinogalactan protein (AHRD V3.3 *-* G7LAE6_MEDTR)","protein_coding"
"Solyc08g045780","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9RVL0_RICCO)","protein_coding"
"Solyc08g061140","No alias","Solanum lycopersicum","overexpressor of cationic peroxidase 3 (AHRD V3.3 *** AT5G11270.1)","protein_coding"
"Solyc08g061630","No alias","Solanum lycopersicum","YGGT family protein (AHRD V3.3 *** B9HD03_POPTR)","protein_coding"
"Solyc08g065490","No alias","Solanum lycopersicum","Serine hydroxymethyltransferase (AHRD V3.3 *** M0ZQ61_SOLTU)","protein_coding"
"Solyc08g065970","No alias","Solanum lycopersicum","Sigma factor (AHRD V3.3 *** A0A0G2STQ0_9ROSI)","protein_coding"
"Solyc08g068230","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A0B2SBT0_GLYSO)","protein_coding"
"Solyc08g069100","No alias","Solanum lycopersicum","LOW QUALITY:Exocyst complex exo70-like protein (AHRD V3.3 *** G7I5R5_MEDTR)","protein_coding"
"Solyc08g075470","No alias","Solanum lycopersicum","WAT1-related protein (AHRD V3.3 *** K4CMR4_SOLLC)","protein_coding"
"Solyc08g076150","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** U5GMW9_POPTR)","protein_coding"
"Solyc08g077120","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein (AHRD V3.3 *-* D7MRC5_ARALL)","protein_coding"
"Solyc08g077140","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein (AHRD V3.3 *-* A0A103XEM3_CYNCS)","protein_coding"
"Solyc08g078020","No alias","Solanum lycopersicum","LOW QUALITY:Methionine rich arabinogalactan (AHRD V3.3 *** Q52QJ6_SOLLC)","protein_coding"
"Solyc08g078080","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103XFF0_CYNCS)","protein_coding"
"Solyc08g078720","No alias","Solanum lycopersicum","Heat-shock protein, putative (AHRD V3.3 *-* B9R9S7_RICCO)","protein_coding"
"Solyc08g078820","No alias","Solanum lycopersicum","Autophagy-related protein (AHRD V3.3 *** K4CNP1_SOLLC)","protein_coding"
"Solyc08g080120","No alias","Solanum lycopersicum","Homeobox protein knotted-1, putative (AHRD V3.3 *** B9RC00_RICCO)","protein_coding"
"Solyc08g080200","No alias","Solanum lycopersicum","SPX domain-containing family protein (AHRD V3.3 *** B9GW54_POPTR)","protein_coding"
"Solyc08g080250","No alias","Solanum lycopersicum","APO protein 1 (AHRD V3.3 *** F4I896_ARATH)","protein_coding"
"Solyc08g080320","No alias","Solanum lycopersicum","BAG family molecular chaperone regulator 2 (AHRD V3.3 *** BAG2_ARATH)","protein_coding"
"Solyc08g080550","No alias","Solanum lycopersicum","Dead box ATP-dependent RNA helicase, putative (AHRD V3.3 *** B9RC60_RICCO)","protein_coding"
"Solyc08g081170","No alias","Solanum lycopersicum","UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase (AHRD V3.3 *** W9QPL2_9ROSA)","protein_coding"
"Solyc08g081280","No alias","Solanum lycopersicum","CDK activating kinase (AHRD V3.3 *** A7M6H0_TOBAC)","protein_coding"
"Solyc08g081930","No alias","Solanum lycopersicum","Aldose 1-epimerase, putative (AHRD V3.3 *** B9RCN0_RICCO)","protein_coding"
"Solyc08g082010","No alias","Solanum lycopersicum","Myosin heavy chain-like protein (AHRD V3.3 *** Q9FJ35_ARATH)","protein_coding"
"Solyc08g082170","No alias","Solanum lycopersicum","Pectin lyase-like superfamily protein (AHRD V3.3 *** A0A097PQY8_SOLLC)","protein_coding"
"Solyc08g082280","No alias","Solanum lycopersicum","Long-Chain Acyl-CoA Synthetase (AHRD V3.3 *** A0A0G2SJB5_SALMI)","protein_coding"
"Solyc08g082590","No alias","Solanum lycopersicum","Glutaredoxin (AHRD V3.3 *** A0A103XR19_CYNCS)","protein_coding"
"Solyc08g083320","No alias","Solanum lycopersicum","granule-bound starch synthase 1","protein_coding"
"Solyc09g005640","No alias","Solanum lycopersicum","Protein SCO1, mitochondrial-like protein (AHRD V3.3 *** A0A0B0PAY7_GOSAR)","protein_coding"
"Solyc09g007320","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A118K5S3_CYNCS)","protein_coding"
"Solyc09g007760","No alias","Solanum lycopersicum","plasma membrane intrinsic protein 2.10","protein_coding"
"Solyc09g007770","No alias","Solanum lycopersicum","plasma membrane intrinsic protein 2.1","protein_coding"
"Solyc09g008040","No alias","Solanum lycopersicum","Sigma factor (AHRD V3.3 *** A0A0G2STR6_9ROSI)","protein_coding"
"Solyc09g008200","No alias","Solanum lycopersicum","Heavy metal transport/detoxification superfamily protein (AHRD V3.3 *** AT5G03380.1)","protein_coding"
"Solyc09g010450","No alias","Solanum lycopersicum","Pentatricopeptide repeat (PPR) superfamily protein (AHRD V3.3 *** AT3G53700.1)","protein_coding"
"Solyc09g010570","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc09g011140","No alias","Solanum lycopersicum","NAD(P)-binding Rossmann-fold superfamily protein (AHRD V3.3 *** AT5G06060.1),Pfam:PF13561","protein_coding"
"Solyc09g011640","No alias","Solanum lycopersicum","Putative glutathione S-transferase T2","protein_coding"
"Solyc09g013100","No alias","Solanum lycopersicum","histone-lysine N-methyltransferase ATXR3-like protein (AHRD V3.3 *** AT5G01590.1)","protein_coding"
"Solyc09g014400","No alias","Solanum lycopersicum","starch-binding domain-containing protein","protein_coding"
"Solyc09g019970","No alias","Solanum lycopersicum","Ubiquitin carboxyl-terminal hydrolase, putative (AHRD V3.3 *** B9SWA7_RICCO)","protein_coding"
"Solyc09g031970","No alias","Solanum lycopersicum","Alpha-1,4 glucan phosphorylase (AHRD V3.3 *** K4CSQ2_SOLLC)","protein_coding"
"Solyc09g061710","No alias","Solanum lycopersicum","Alba DNA/RNA-binding protein (AHRD V3.3 *-* AT3G07030.5)","protein_coding"
"Solyc09g063010","No alias","Solanum lycopersicum","bHLH transcription factor 058","protein_coding"
"Solyc09g064610","No alias","Solanum lycopersicum","NBS-LRR resistance protein (AHRD V3.3 *** B6E013_SOLBU)","protein_coding"
"Solyc09g065020","No alias","Solanum lycopersicum","F-box family protein (AHRD V3.3 *** A0A061DRU1_THECC)","protein_coding"
"Solyc09g065860","No alias","Solanum lycopersicum","Phosphoribulokinase/uridine kinase family protein (AHRD V3.3 *** U5GGU8_POPTR)","protein_coding"
"Solyc09g066290","No alias","Solanum lycopersicum","Kinesin light chain, putative (AHRD V3.3 *** B9T299_RICCO)","protein_coding"
"Solyc09g074050","No alias","Solanum lycopersicum","2OG-Fe(II) oxygenase family oxidoreductase (AHRD V3.3 *** A0A072VPE6_MEDTR)","protein_coding"
"Solyc09g074100","No alias","Solanum lycopersicum","tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (AHRD V3.3 *** AT1G51310.1)","protein_coding"
"Solyc09g075390","No alias","Solanum lycopersicum","Rela-spot homolog family protein (AHRD V3.3 *** B9I9P5_POPTR)","protein_coding"
"Solyc09g082580","No alias","Solanum lycopersicum","auxin canalization protein (DUF828) (AHRD V3.3 *** AT3G22810.1)","protein_coding"
"Solyc09g083110","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103XDL5_CYNCS)","protein_coding"
"Solyc09g083190","No alias","Solanum lycopersicum","NAD(P)H dehydrogenase 18 (AHRD V3.3 *** A0A061ELZ4_THECC)","protein_coding"
"Solyc09g083280","No alias","Solanum lycopersicum","auxin-regulated IAA1","protein_coding"
"Solyc09g083290","No alias","Solanum lycopersicum","auxin-regulated IAA14","protein_coding"
"Solyc09g090960","No alias","Solanum lycopersicum","RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD V3.3 *** AT1G60000.1)","protein_coding"
"Solyc09g091010","No alias","Solanum lycopersicum","Transmembrane protein, putative (AHRD V3.3 *** G7I6P2_MEDTR)","protein_coding"
"Solyc09g091580","No alias","Solanum lycopersicum","ABC1 protein kinase 6 (AHRD V3.3 *** Q9LRN0_ARATH)","protein_coding"
"Solyc09g091960","No alias","Solanum lycopersicum","High mobility group B-like protein (AHRD V3.3 *** G7KWP7_MEDTR)","protein_coding"
"Solyc09g092090","No alias","Solanum lycopersicum","50S ribosomal protein L13, putative (AHRD V3.3 *** B9RBL9_RICCO)","protein_coding"
"Solyc09g092490","No alias","Solanum lycopersicum","Glycosyltransferase (AHRD V3.3 *-* B6EWX4_LYCBA)","protein_coding"
"Solyc10g005000","No alias","Solanum lycopersicum","SUN-like protein 27","protein_coding"
"Solyc10g005210","No alias","Solanum lycopersicum","DNA-3-methyladenine glycosylase, putative (AHRD V3.3 *** B9SVU2_RICCO)","protein_coding"
"Solyc10g005660","No alias","Solanum lycopersicum","Eukaryotic translation initiation factor 3 subunit F (AHRD V3.3 *** A0A0D6R1D0_ARACU)","protein_coding"
"Solyc10g006240","No alias","Solanum lycopersicum","Proline synthase co-transcribed bacterial (AHRD V3.3 *** A0A1D1ZCG0_9ARAE)","protein_coding"
"Solyc10g006530","No alias","Solanum lycopersicum","Photosynthetic NDH subcomplex L 3 (AHRD V3.3 *** A0A0F7CYJ0_9ROSI)","protein_coding"
"Solyc10g006650","No alias","Solanum lycopersicum","Quinone reductase family protein (AHRD V3.3 *** AT4G27270.1)","protein_coding"
"Solyc10g008160","No alias","Solanum lycopersicum","Two-component response regulator-like APRR2 (AHRD V3.3 *** A0A151SET7_CAJCA)","protein_coding"
"Solyc10g008200","No alias","Solanum lycopersicum","Tyrosine aminotransferase, putative (AHRD V3.3 *** B9RVV0_RICCO)","protein_coding"
"Solyc10g038080","No alias","Solanum lycopersicum","Shikimate dehydrogenase, 3-dehydroquinate dehydratase (AHRD V3.3 *** A0A0K9PLS3_ZOSMR)","protein_coding"
"Solyc10g047530","No alias","Solanum lycopersicum","Phototropic-responsive NPH3 family protein (AHRD V3.3 *** AT5G64330.1)","protein_coding"
"Solyc10g052880","No alias","Solanum lycopersicum","LOW QUALITY:Leucine-rich repeat receptor-like protein kinase family protein (AHRD V3.3 *** A0A061DFG6_THECC)","protein_coding"
"Solyc10g054440","No alias","Solanum lycopersicum","arginine decarboxylase 1","protein_coding"
"Solyc10g055680","No alias","Solanum lycopersicum","Methyltransferase (AHRD V3.3 *** K4D1F8_SOLLC)","protein_coding"
"Solyc10g074930","No alias","Solanum lycopersicum","serine/threonine protein kinase 2 (AHRD V3.3 *** AT3G08720.4)","protein_coding"
"Solyc10g075030","No alias","Solanum lycopersicum","B3 domain-containing protein (AHRD V3.3 *-* A0A0B2SFE8_GLYSO)","protein_coding"
"Solyc10g077040","No alias","Solanum lycopersicum","putative magnesium-protoporphyrin monomethyl ester cyclase","protein_coding"
"Solyc10g078260","No alias","Solanum lycopersicum","Peptidyl-prolyl cis-trans isomerase (AHRD V3.3 *-* A0A097P7D2_WHEAT)","protein_coding"
"Solyc10g078280","No alias","Solanum lycopersicum","Cytochrome P450, putative (AHRD V3.3 *** A0A061FPW5_THECC)","protein_coding"
"Solyc10g078580","No alias","Solanum lycopersicum","Arabinogalactan peptide 14 (AHRD V3.3 *** AGP14_ARATH)","protein_coding"
"Solyc10g078710","No alias","Solanum lycopersicum","rho GTPase-activating gacO-like protein (AHRD V3.3 *** AT3G57930.2)","protein_coding"
"Solyc10g079610","No alias","Solanum lycopersicum","Strictosidine synthase, putative (AHRD V3.3 *** B9T2X5_RICCO)","protein_coding"
"Solyc10g080070","No alias","Solanum lycopersicum","Mitochondrial GTPase 1 (AHRD V3.3 *** A0A0B0PKU7_GOSAR)","protein_coding"
"Solyc10g080360","No alias","Solanum lycopersicum","LOW QUALITY:Transmembrane protein, putative (AHRD V3.3 *** G7IZE0_MEDTR)","protein_coding"
"Solyc10g080470","No alias","Solanum lycopersicum","LOW QUALITY:CCAAT/enhancer-binding protein delta (AHRD V3.3 *** A0A1D1ZAI0_9ARAE)","protein_coding"
"Solyc10g083460","No alias","Solanum lycopersicum","Zinc finger A20 and AN1 domain-containing stress-associated protein (AHRD V3.3 *** V5PZR5_9CARY)","protein_coding"
"Solyc10g083910","No alias","Solanum lycopersicum","BnaC04g08430D protein (AHRD V3.3 *** A0A078H5Q1_BRANA)","protein_coding"
"Solyc10g084430","No alias","Solanum lycopersicum","RING/U-box superfamily protein (AHRD V3.3 *** AT5G02750.1)","protein_coding"
"Solyc10g085030","No alias","Solanum lycopersicum","SOUL heme-binding family protein (AHRD V3.3 *** AT2G37970.1)","protein_coding"
"Solyc10g085820","No alias","Solanum lycopersicum","DnaJ subfamily C member 28 (AHRD V3.3 *** A0A0B0MTA2_GOSAR)","protein_coding"
"Solyc10g085870","No alias","Solanum lycopersicum","Glycosyltransferase (AHRD V3.3 *** M1BFM3_SOLTU)","protein_coding"
"Solyc10g086170","No alias","Solanum lycopersicum","amidase 1 (AHRD V3.3 *** AT1G08980.1)","protein_coding"
"Solyc10g086180","No alias","Solanum lycopersicum","Phenylalanine ammonia-lyase (AHRD V3.3 *** PAL2_TOBAC)","protein_coding"
"Solyc10g086490","No alias","Solanum lycopersicum","Protein phosphatase 2c, putative (AHRD V3.3 *** B9T262_RICCO)","protein_coding"
"Solyc11g005050","No alias","Solanum lycopersicum","Mitochondrial ATP synthase 6 kDa subunit (AHRD V3.3 *** A0A0K9PE24_ZOSMR)","protein_coding"
"Solyc11g005190","No alias","Solanum lycopersicum","Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** AT5G23730.1)","protein_coding"
"Solyc11g005460","No alias","Solanum lycopersicum","ENTH/VHS/GAT family protein (AHRD V3.3 *** AT5G63640.2)","protein_coding"
"Solyc11g005620","No alias","Solanum lycopersicum","acetylglutamate kinase","protein_coding"
"Solyc11g005870","No alias","Solanum lycopersicum","O-fucosyltransferase family protein (AHRD V3.3 *** AT5G64600.1)","protein_coding"
"Solyc11g006300","No alias","Solanum lycopersicum","3-oxo-5-alpha-steroid 4-dehydrogenase family protein (AHRD V3.3 *** AT5G16010.1)","protein_coding"
"Solyc11g007990","No alias","Solanum lycopersicum","chloroplast malate dehydrogenase (mdh)","protein_coding"
"Solyc11g008110","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc11g008250","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *-* AT3G10420.2)","protein_coding"
"Solyc11g008810","No alias","Solanum lycopersicum","Beta-hexosaminidase (AHRD V3.3 *** M1BC44_SOLTU)","protein_coding"
"Solyc11g009080","No alias","Solanum lycopersicum","DAHP synthase 1 precursor","protein_coding"
"Solyc11g010270","No alias","Solanum lycopersicum","Homeobox associated leucine zipper protein (AHRD V3.3 *** A0A072TTL6_MEDTR)","protein_coding"
"Solyc11g010280","No alias","Solanum lycopersicum","NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic (AHRD V3.3 --* NU5C_GUIAB)","protein_coding"
"Solyc11g010480","No alias","Solanum lycopersicum","Protein curvature thylakoid chloroplastic-like (AHRD V3.3 *-* A0A061SMW2_9CHLO)","protein_coding"
"Solyc11g010730","No alias","Solanum lycopersicum","Protein kinase family protein (AHRD V3.3 *** F4KI00_ARATH)","protein_coding"
"Solyc11g011170","No alias","Solanum lycopersicum","Senescence-associated protein (AHRD V3.3 *** Q9AXU3_IPOBA)","protein_coding"
"Solyc11g011390","No alias","Solanum lycopersicum","Glutamine synthetase (AHRD V3.3 *-* GLNA_NICPL)","protein_coding"
"Solyc11g011440","No alias","Solanum lycopersicum","LOW QUALITY:Eukaryotic aspartyl protease family protein (AHRD V3.3 *** AT1G66180.1)","protein_coding"
"Solyc11g012000","No alias","Solanum lycopersicum","extracellular ligand-gated ion channel protein (DUF3537) (AHRD V3.3 *** AT3G20300.1)","protein_coding"
"Solyc11g012360","No alias","Solanum lycopersicum","Tonoplast dicarboxylate transporter (AHRD V3.3 *** K4D641_SOLLC)","protein_coding"
"Solyc11g017230","No alias","Solanum lycopersicum","5'-3' exonuclease family protein (AHRD V3.3 *** AT1G34380.2)","protein_coding"
"Solyc11g020860","No alias","Solanum lycopersicum","LOW QUALITY:galactosyltransferase family protein (AHRD V3.3 *-* AT1G30260.1)","protein_coding"
"Solyc11g032200","No alias","Solanum lycopersicum","Lipase (AHRD V3.3 *** K4D7Q5_SOLLC)","protein_coding"
"Solyc11g040040","No alias","Solanum lycopersicum","Phototropic-responsive NPH3 family protein (AHRD V3.3 *** AT3G19850.1)","protein_coding"
"Solyc11g040150","No alias","Solanum lycopersicum","Heparan-alpha-glucosaminide N-acetyltransferase (AHRD V3.3 *** A0A0B0P2Z2_GOSAR)","protein_coding"
"Solyc11g042630","No alias","Solanum lycopersicum","DUF506 family protein (AHRD V3.3 *** G7K973_MEDTR)","protein_coding"
"Solyc11g044360","No alias","Solanum lycopersicum","mTERF family protein","protein_coding"
"Solyc11g044970","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc11g045110","No alias","Solanum lycopersicum","Sucrose-phosphate synthase family protein (AHRD V3.3 *** AT4G10120.3)","protein_coding"
"Solyc11g062360","No alias","Solanum lycopersicum","Transferring glycosyl group transferase, putative (AHRD V3.3 *** G7L963_MEDTR)","protein_coding"
"Solyc11g065000","No alias","Solanum lycopersicum","F-box family protein (AHRD V3.3 *** B9HNI4_POPTR)","protein_coding"
"Solyc11g065070","No alias","Solanum lycopersicum","Hydroxymethylglutaryl-CoA lyase (AHRD V3.3 *** W9QRW1_9ROSA)","protein_coding"
"Solyc11g065250","No alias","Solanum lycopersicum","Pentatricopeptide repeat superfamily protein (AHRD V3.3 *** A0A061FB64_THECC)","protein_coding"
"Solyc11g066410","No alias","Solanum lycopersicum","50S ribosomal protein L9 (AHRD V3.3 *** A0A0A9CWP8_ARUDO)","protein_coding"
"Solyc11g066660","No alias","Solanum lycopersicum","Magnesium transporter MRS2-like protein (AHRD V3.3 *** A0A072VBF4_MEDTR)","protein_coding"
"Solyc11g066930","No alias","Solanum lycopersicum","DUF868 family protein (DUF868) (AHRD V3.3 *** AT2G27770.1)","protein_coding"
"Solyc11g067210","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103XH63_CYNCS)","protein_coding"
"Solyc11g069860","No alias","Solanum lycopersicum","Glutaredoxin family protein (AHRD V3.3 *** AT5G20500.1)","protein_coding"
"Solyc11g071290","No alias","Solanum lycopersicum","Alcohol dehydrogenase (AHRD V3.3 *** I6N8Z5_OLEEU)","protein_coding"
"Solyc11g073020","No alias","Solanum lycopersicum","Chloroplast-targeted copper chaperone protein, putative (AHRD V3.3 *** A0A061GXQ1_THECC)","protein_coding"
"Solyc11g073120","No alias","Solanum lycopersicum","R2R3MYB transcription factor 58","protein_coding"
"Solyc12g005660","No alias","Solanum lycopersicum","Zinc finger, B-box (AHRD V3.3 *-* A0A103Y7X2_CYNCS)","protein_coding"
"Solyc12g009200","No alias","Solanum lycopersicum","Chlorophyll a-b binding protein, chloroplastic (AHRD V3.3 *** K4DC08_SOLLC)","protein_coding"
"Solyc12g009890","No alias","Solanum lycopersicum","Vacuolar ATPase subunit H protein (AHRD V3.3 *** B6SIW6_MAIZE)","protein_coding"
"Solyc12g010130","No alias","Solanum lycopersicum","Non-specific serine/threonine protein kinase (AHRD V3.3 *** G4XMX2_SOLLC)","protein_coding"
"Solyc12g010550","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc12g014330","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9STL7_RICCO)","protein_coding"
"Solyc12g017370","No alias","Solanum lycopersicum","Myb family transcription factor APL (AHRD V3.3 *** V9LXI2_TOBAC)","protein_coding"
"Solyc12g021280","No alias","Solanum lycopersicum","Kinase family protein (AHRD V3.3 *** B9HIY8_POPTR)","protein_coding"
"Solyc12g055820","No alias","Solanum lycopersicum","cinnamyl-alcohol dehydrogenase (AHRD V3.3 *** AT1G72680.1)","protein_coding"
"Solyc12g055940","No alias","Solanum lycopersicum","Pentatricopeptide repeat (PPR) superfamily protein (AHRD V3.3 *** AT1G64430.2)","protein_coding"
"Solyc12g095940","No alias","Solanum lycopersicum","LOW QUALITY:DUF1764 domain protein (AHRD V3.3 *** A0A072UNS8_MEDTR)","protein_coding"
"Solyc12g096090","No alias","Solanum lycopersicum","Cadmium induced protein AS8 (AHRD V3.3 *** A9PH05_POPTR)","protein_coding"
"Solyc12g096580","No alias","Solanum lycopersicum","Potassium transporter (AHRD V3.3 *** M1BTK3_SOLTU)","protein_coding"
"Solyc12g096590","No alias","Solanum lycopersicum","6,7-dimethyl-8-ribityllumazine synthase (AHRD V3.3 *** K4DHD2_SOLLC)","protein_coding"
"Solyc12g096670","No alias","Solanum lycopersicum","Ankyrin repeat family protein (AHRD V3.3 *** AT2G31820.1)","protein_coding"
"Solyc12g098150","No alias","Solanum lycopersicum","Aldo/keto reductase (AHRD V3.3 *** A0A103Y0I1_CYNCS)","protein_coding"
"Solyc12g099110","No alias","Solanum lycopersicum","30S ribosomal protein S1","protein_coding"