"sequence_id","alias","species","description","type"
"113544","No alias","Selaginella moellendorffii ","alpha/beta-Hydrolases superfamily protein","protein_coding"
"136743","No alias","Selaginella moellendorffii ","chlororespiratory reduction 7","protein_coding"
"143443","No alias","Selaginella moellendorffii ","Peptidase S41 family protein","protein_coding"
"166047","No alias","Selaginella moellendorffii ","glutamate receptor 3.3","protein_coding"
"228107","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"228905","No alias","Selaginella moellendorffii ","translocase of the inner mitochondrial membrane 13","protein_coding"
"267183","No alias","Selaginella moellendorffii ","Nucleotide-sugar transporter family protein","protein_coding"
"403169","No alias","Selaginella moellendorffii ","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"403170","No alias","Selaginella moellendorffii ","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"403773","No alias","Selaginella moellendorffii ","Mov34/MPN/PAD-1 family protein","protein_coding"
"404232","No alias","Selaginella moellendorffii ","SART-1 family","protein_coding"
"406572","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"407201","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"412218","No alias","Selaginella moellendorffii ","RGPR-related","protein_coding"
"416042","No alias","Selaginella moellendorffii ","glyoxylate reductase 2","protein_coding"
"419083","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"420581","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"423583","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"426136","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"427398","No alias","Selaginella moellendorffii ","protein arginine methyltransferase 7","protein_coding"
"431757","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"437462","No alias","Selaginella moellendorffii ","RING/U-box superfamily protein","protein_coding"
"438838","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"439129","No alias","Selaginella moellendorffii ","Translation initiation factor 3 protein","protein_coding"
"441087","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"49196","No alias","Selaginella moellendorffii ","mitochondrial editing factor  22","protein_coding"
"59108","No alias","Selaginella moellendorffii ","2Fe-2S ferredoxin-like superfamily protein","protein_coding"
"72358","No alias","Selaginella moellendorffii ","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"80753","No alias","Selaginella moellendorffii ","alpha/beta-Hydrolases superfamily protein","protein_coding"
"90486","No alias","Selaginella moellendorffii ","replication factor C 2","protein_coding"
"93404","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"95125","No alias","Selaginella moellendorffii ","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"A4A49_34618","No alias","Nicotiana attenuata","hypothetical protein","protein_coding"
"A4A49_37494","No alias","Nicotiana attenuata","hypothetical protein","protein_coding"
"At1g02870","No alias","Arabidopsis thaliana","At1g02870 [Source:UniProtKB/TrEMBL;Acc:Q8RWK5]","protein_coding"
"At1g03360","No alias","Arabidopsis thaliana","RRP4 [Source:UniProtKB/TrEMBL;Acc:A0A178W3N1]","protein_coding"
"At1g04690","No alias","Arabidopsis thaliana","Probable voltage-gated potassium channel subunit beta [Source:UniProtKB/Swiss-Prot;Acc:O23016]","protein_coding"
"At1g08580","No alias","Arabidopsis thaliana","At1g08580 [Source:UniProtKB/TrEMBL;Acc:Q9FRS7]","protein_coding"
"At1g13160","No alias","Arabidopsis thaliana","ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WVH7]","protein_coding"
"At1g15250","No alias","Arabidopsis thaliana","60S ribosomal protein L37-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFH7]","protein_coding"
"At1g15440","No alias","Arabidopsis thaliana","Periodic tryptophan protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYZ5]","protein_coding"
"At1g15660","No alias","Arabidopsis thaliana","Centromere protein C [Source:UniProtKB/Swiss-Prot;Acc:Q66LG9]","protein_coding"
"At1g16790","No alias","Arabidopsis thaliana","At1g16790 [Source:UniProtKB/TrEMBL;Acc:Q6NQG3]","protein_coding"
"At1g17760","No alias","Arabidopsis thaliana","Cleavage stimulation factor subunit 77 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUP1]","protein_coding"
"At1g20220","No alias","Arabidopsis thaliana","Alba DNA/RNA-binding protein [Source:UniProtKB/TrEMBL;Acc:Q944A2]","protein_coding"
"At1g20450","No alias","Arabidopsis thaliana","Dehydrin ERD10 [Source:UniProtKB/Swiss-Prot;Acc:P42759]","protein_coding"
"At1g21380","No alias","Arabidopsis thaliana","TOM1-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL6]","protein_coding"
"At1g23290","No alias","Arabidopsis thaliana","60S ribosomal protein L27a-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LR33]","protein_coding"
"At1g29940","No alias","Arabidopsis thaliana","DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178W5B4]","protein_coding"
"At1g31970","No alias","Arabidopsis thaliana","STRS1 [Source:UniProtKB/TrEMBL;Acc:A0A178W5E1]","protein_coding"
"At1g34340","No alias","Arabidopsis thaliana","Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9XID7]","protein_coding"
"At1g42440","No alias","Arabidopsis thaliana","At1g42440/F7F22_7 [Source:UniProtKB/TrEMBL;Acc:Q9ASU6]","protein_coding"
"At1g48830","No alias","Arabidopsis thaliana","40S ribosomal protein S7 [Source:UniProtKB/TrEMBL;Acc:A0A178WGF0]","protein_coding"
"At1g56050","No alias","Arabidopsis thaliana","Obg-like ATPase 1 [Source:UniProtKB/TrEMBL;Acc:F4I3J0]","protein_coding"
"At1g56110","No alias","Arabidopsis thaliana","At1g56110/T6H22_9 [Source:UniProtKB/TrEMBL;Acc:Q9SGT7]","protein_coding"
"At1g70210","No alias","Arabidopsis thaliana","Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]","protein_coding"
"At1g71210","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At1g71210, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GZA6]","protein_coding"
"At1g72440","No alias","Arabidopsis thaliana","CCAAT-binding factor [Source:UniProtKB/TrEMBL;Acc:F4IDC2]","protein_coding"
"At1g75670","No alias","Arabidopsis thaliana","DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q8H1F8]","protein_coding"
"At1g76400","No alias","Arabidopsis thaliana","Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A [Source:UniProtKB/Swiss-Prot;Acc:Q9SFX3]","protein_coding"
"At2g01250","No alias","Arabidopsis thaliana","60S ribosomal protein L7-2 [Source:UniProtKB/Swiss-Prot;Acc:P60040]","protein_coding"
"At2g01640","No alias","Arabidopsis thaliana","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU92]","protein_coding"
"At2g16440","No alias","Arabidopsis thaliana","DNA replication licensing factor MCM4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVF5]","protein_coding"
"At2g17250","No alias","Arabidopsis thaliana","CCAAT-binding factor [Source:UniProtKB/TrEMBL;Acc:F4IMH3]","protein_coding"
"At2g18220","No alias","Arabidopsis thaliana","Nucleolar complex protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPV5]","protein_coding"
"At2g18330","No alias","Arabidopsis thaliana","AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPW5]","protein_coding"
"At2g18900","No alias","Arabidopsis thaliana","Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IRI1]","protein_coding"
"At2g28470","No alias","Arabidopsis thaliana","Beta-galactosidase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV4]","protein_coding"
"At2g29140","No alias","Arabidopsis thaliana","Pumilio homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW02]","protein_coding"
"At2g31270","No alias","Arabidopsis thaliana","CDT1-like protein a, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJW9]","protein_coding"
"At2g32060","No alias","Arabidopsis thaliana","40S ribosomal protein S12 [Source:UniProtKB/TrEMBL;Acc:A0A178VU31]","protein_coding"
"At2g34050","No alias","Arabidopsis thaliana","ATP synthase F1 complex assembly factor [Source:UniProtKB/TrEMBL;Acc:O22958]","protein_coding"
"At2g34350","No alias","Arabidopsis thaliana","Nodulin-like / Major Facilitator Superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WMV5]","protein_coding"
"At2g36620","No alias","Arabidopsis thaliana","60S ribosomal protein L24-1 [Source:UniProtKB/Swiss-Prot;Acc:Q42347]","protein_coding"
"At2g37560","No alias","Arabidopsis thaliana","Origin of replication complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q38899]","protein_coding"
"At2g37585","No alias","Arabidopsis thaliana","Beta-glucuronosyltransferase GlcAT14C [Source:UniProtKB/Swiss-Prot;Acc:Q8S8P3]","protein_coding"
"At2g40360","No alias","Arabidopsis thaliana","Ribosome biogenesis protein BOP1 homolog [Source:UniProtKB/Swiss-Prot;Acc:F4IH25]","protein_coding"
"At2g42200","No alias","Arabidopsis thaliana","Squamosa promoter-binding-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q700W2]","protein_coding"
"At2g43630","No alias","Arabidopsis thaliana","Nucleusenvelope protein [Source:UniProtKB/TrEMBL;Acc:Q8VYY8]","protein_coding"
"At2g45590","No alias","Arabidopsis thaliana","Receptor-like serine/threonine-protein kinase At2g45590 [Source:UniProtKB/Swiss-Prot;Acc:O64639]","protein_coding"
"At3g02250","No alias","Arabidopsis thaliana","O-fucosyltransferase 21 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZR8]","protein_coding"
"At3g02450","No alias","Arabidopsis thaliana","Probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M895]","protein_coding"
"At3g03960","No alias","Arabidopsis thaliana","T-complex protein 1 subunit theta [Source:UniProtKB/Swiss-Prot;Acc:Q94K05]","protein_coding"
"At3g09630","No alias","Arabidopsis thaliana","60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]","protein_coding"
"At3g11964","No alias","Arabidopsis thaliana","rRNA biogenesis protein RRP5 [Source:UniProtKB/Swiss-Prot;Acc:F4J8K6]","protein_coding"
"At3g12270","No alias","Arabidopsis thaliana","Probable protein arginine N-methyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVD6]","protein_coding"
"At3g12670","No alias","Arabidopsis thaliana","CTP synthase [Source:UniProtKB/TrEMBL;Acc:A0A178VDI5]","protein_coding"
"At3g12930","No alias","Arabidopsis thaliana","Protein Iojap, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LDY9]","protein_coding"
"At3g13230","No alias","Arabidopsis thaliana","At3g13230 [Source:UniProtKB/TrEMBL;Acc:Q9LTU6]","protein_coding"
"At3g15080","No alias","Arabidopsis thaliana","At3g15080 [Source:UniProtKB/TrEMBL;Acc:Q8LAA0]","protein_coding"
"At3g16080","No alias","Arabidopsis thaliana","60S ribosomal protein L37-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEM8]","protein_coding"
"At3g16780","No alias","Arabidopsis thaliana","60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]","protein_coding"
"At3g18190","No alias","Arabidopsis thaliana","T-complex protein 1 subunit delta [Source:UniProtKB/Swiss-Prot;Acc:Q9LV21]","protein_coding"
"At3g21540","No alias","Arabidopsis thaliana","Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LVF2]","protein_coding"
"At3g22880","No alias","Arabidopsis thaliana","Meiotic recombination protein DMC1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q39009]","protein_coding"
"At3g23710","No alias","Arabidopsis thaliana","Tic22-III [Source:UniProtKB/TrEMBL;Acc:A0A178V7Q4]","protein_coding"
"At3g25230","No alias","Arabidopsis thaliana","Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:B3H746]","protein_coding"
"At3g26410","No alias","Arabidopsis thaliana","tRNA modification 11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LIN4]","protein_coding"
"At3g46010","No alias","Arabidopsis thaliana","Actin depolymerizing factor 1 [Source:UniProtKB/TrEMBL;Acc:A8MR09]","protein_coding"
"At3g46210","No alias","Arabidopsis thaliana","Exosome complex exonuclease RRP46 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LX74]","protein_coding"
"At3g49240","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]","protein_coding"
"At3g49890","No alias","Arabidopsis thaliana","unknown protein; Has 27 Blast hits to 27 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). [Source:TAIR;Acc:AT3G49890]","protein_coding"
"At3g51870","No alias","Arabidopsis thaliana","Probable envelope ADP,ATP carrier protein, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O65023]","protein_coding"
"At3g52170","No alias","Arabidopsis thaliana","DNA binding protein [Source:UniProtKB/TrEMBL;Acc:Q8L641]","protein_coding"
"At3g53430","No alias","Arabidopsis thaliana","60S ribosomal Protein L12-like [Source:UniProtKB/TrEMBL;Acc:Q0WW72]","protein_coding"
"At3g55200","No alias","Arabidopsis thaliana","Spliceosome-associated protein 130 B [Source:UniProtKB/Swiss-Prot;Acc:P0DKL6]","protein_coding"
"At3g55510","No alias","Arabidopsis thaliana","Noc2p family [Source:UniProtKB/TrEMBL;Acc:Q0WVH0]","protein_coding"
"At3g60770","No alias","Arabidopsis thaliana","40S ribosomal protein S13-1 [Source:UniProtKB/Swiss-Prot;Acc:P59223]","protein_coding"
"At3g60880","No alias","Arabidopsis thaliana","4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZX6]","protein_coding"
"At3g61360","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At3g61360 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2C8]","protein_coding"
"At3g63090","No alias","Arabidopsis thaliana","Ubiquitin carboxyl-terminal hydrolase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYB3]","protein_coding"
"At4g02790","No alias","Arabidopsis thaliana","DAR GTPase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F6]","protein_coding"
"At4g03070","No alias","Arabidopsis thaliana","Probable 2-oxoglutarate-dependent dioxygenase AOP1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTA3]","protein_coding"
"At4g03100","No alias","Arabidopsis thaliana","Rho GTPase-activating protein 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JI46]","protein_coding"
"At4g04940","No alias","Arabidopsis thaliana","Putative WD-repeat membrane protein [Source:UniProtKB/TrEMBL;Acc:Q93YS7]","protein_coding"
"At4g05410","No alias","Arabidopsis thaliana","U3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]","protein_coding"
"At4g10620","No alias","Arabidopsis thaliana","F3H7.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9ZSB8]","protein_coding"
"At4g16390","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]","protein_coding"
"At4g18270","No alias","Arabidopsis thaliana","Phospho-N-acetylmuramoyl-pentapeptide-transferase homolog [Source:UniProtKB/Swiss-Prot;Acc:O49730]","protein_coding"
"At4g21140","No alias","Arabidopsis thaliana","BEST Arabidopsis thaliana protein match is: copper ion binding (TAIR:AT4G05400.2); Has 41 Blast hits to 41 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). [Source:TAIR;Acc:AT4G21140]","protein_coding"
"At4g25210","No alias","Arabidopsis thaliana","GLABROUS1 enhancer-binding protein-like [Source:UniProtKB/Swiss-Prot;Acc:Q9SB42]","protein_coding"
"At4g25740","No alias","Arabidopsis thaliana","40S ribosomal protein S10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW09]","protein_coding"
"At4g28200","No alias","Arabidopsis thaliana","At4g28200 [Source:UniProtKB/TrEMBL;Acc:Q9M0I7]","protein_coding"
"At4g29510","No alias","Arabidopsis thaliana","Protein arginine N-methyltransferase 1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU94]","protein_coding"
"At4g34910","No alias","Arabidopsis thaliana","DEAD-box ATP-dependent RNA helicase 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW44]","protein_coding"
"At4g39280","No alias","Arabidopsis thaliana","Phenylalanine--tRNA ligase alpha subunit, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9T034]","protein_coding"
"At4g39960","No alias","Arabidopsis thaliana","AT4g39960/T5J17_130 [Source:UniProtKB/TrEMBL;Acc:Q940V1]","protein_coding"
"At5g02820","No alias","Arabidopsis thaliana","DNA topoisomerase 6 subunit A [Source:UniProtKB/TrEMBL;Acc:A0A178UQD3]","protein_coding"
"At5g05470","No alias","Arabidopsis thaliana","Eukaryotic translation initiation factor 2 subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:Q9FE78]","protein_coding"
"At5g05920","No alias","Arabidopsis thaliana","Deoxyhypusine synthase [Source:UniProtKB/Swiss-Prot;Acc:Q9FI94]","protein_coding"
"At5g05990","No alias","Arabidopsis thaliana","AT5g05990/K18J17_19 [Source:UniProtKB/TrEMBL;Acc:Q9FI87]","protein_coding"
"At5g06000","No alias","Arabidopsis thaliana","Eukaryotic translation initiation factor 3 subunit G [Source:UniProtKB/TrEMBL;Acc:Q9FI86]","protein_coding"
"At5g06460","No alias","Arabidopsis thaliana","UBA 2 [Source:UniProtKB/TrEMBL;Acc:A0A178UEQ1]","protein_coding"
"At5g07320","No alias","Arabidopsis thaliana","Mitochondrial substrate carrier family protein [Source:UniProtKB/TrEMBL;Acc:Q9LY28]","protein_coding"
"At5g08130","No alias","Arabidopsis thaliana","basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT5G08130]","protein_coding"
"At5g09420","No alias","Arabidopsis thaliana","Outer envelope protein 64, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4KCL7]","protein_coding"
"At5g10920","No alias","Arabidopsis thaliana","Argininosuccinate lyase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LEU8]","protein_coding"
"At5g11240","No alias","Arabidopsis thaliana","At5g11240 [Source:UniProtKB/TrEMBL;Acc:B5X503]","protein_coding"
"At5g12220","No alias","Arabidopsis thaliana","Las1-like family protein [Source:UniProtKB/TrEMBL;Acc:F4JZH9]","protein_coding"
"At5g14050","No alias","Arabidopsis thaliana","U3 small nucleolar RNA-associated protein 18 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMU5]","protein_coding"
"At5g15980","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At5g15980, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF1]","protein_coding"
"At5g16750","No alias","Arabidopsis thaliana","Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFE2]","protein_coding"
"At5g17790","No alias","Arabidopsis thaliana","Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]","protein_coding"
"At5g18750","No alias","Arabidopsis thaliana","DNAJ heat shock N-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q3E9D9]","protein_coding"
"At5g19320","No alias","Arabidopsis thaliana","RANGAP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UQD1]","protein_coding"
"At5g22440","No alias","Arabidopsis thaliana","60S ribosomal protein L10a-3 [Source:UniProtKB/Swiss-Prot;Acc:P59231]","protein_coding"
"At5g24330","No alias","Arabidopsis thaliana","Histone-lysine N-methyltransferase ATXR6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNE9]","protein_coding"
"At5g27470","No alias","Arabidopsis thaliana","Serine--tRNA ligase, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q39230]","protein_coding"
"At5g35700","No alias","Arabidopsis thaliana","Fimbrin-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKI0]","protein_coding"
"At5g38720","No alias","Arabidopsis thaliana","unknown protein; Has 13419 Blast hits to 9093 proteins in 698 species: Archae - 38; Bacteria - 1038; Metazoa - 4949; Fungi - 1086; Plants - 485; Viruses - 44; Other Eukaryotes - 5779 (source: NCBI BLink). [Source:TAIR;Acc:AT5G38720]","protein_coding"
"At5g39740","No alias","Arabidopsis thaliana","RPL5B [Source:UniProtKB/TrEMBL;Acc:A0A178UJU5]","protein_coding"
"At5g39960","No alias","Arabidopsis thaliana","GTP-binding protein [Source:UniProtKB/TrEMBL;Acc:F4KFX1]","protein_coding"
"At5g41190","No alias","Arabidopsis thaliana","RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]","protein_coding"
"At5g43080","No alias","Arabidopsis thaliana","Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]","protein_coding"
"At5g45140","No alias","Arabidopsis thaliana","DNA-directed RNA polymerase III subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:F4KD38]","protein_coding"
"At5g46690","No alias","Arabidopsis thaliana","Transcription factor bHLH71 [Source:UniProtKB/Swiss-Prot;Acc:Q56XR0]","protein_coding"
"At5g46920","No alias","Arabidopsis thaliana","Nuclear intron maturase 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FJR9]","protein_coding"
"At5g54910","No alias","Arabidopsis thaliana","DEAD-box ATP-dependent RNA helicase 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFT9]","protein_coding"
"At5g56710","No alias","Arabidopsis thaliana","60S ribosomal protein L31-3 [Source:UniProtKB/Swiss-Prot;Acc:P51420]","protein_coding"
"At5g56950","No alias","Arabidopsis thaliana","Nucleosome assembly protein 1;3 [Source:UniProtKB/Swiss-Prot;Acc:Q94K07]","protein_coding"
"At5g58960","No alias","Arabidopsis thaliana","Plant protein of unknown function (DUF641) [Source:TAIR;Acc:AT5G58960]","protein_coding"
"At5g60930","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT5G60930]","protein_coding"
"At5g61780","No alias","Arabidopsis thaliana","Ribonuclease TUDOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLT0]","protein_coding"
"At5g62710","No alias","Arabidopsis thaliana","Leucine-rich repeat protein kinase family protein [Source:UniProtKB/TrEMBL;Acc:Q8GX94]","protein_coding"
"At5g63120","No alias","Arabidopsis thaliana","DEAD-box ATP-dependent RNA helicase 30 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4R3]","protein_coding"
"At5g63960","No alias","Arabidopsis thaliana","DNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KC69]","protein_coding"
"At5g64140","No alias","Arabidopsis thaliana","RPS28 [Source:UniProtKB/TrEMBL;Acc:A0A178UA91]","protein_coding"
"At5g65900","No alias","Arabidopsis thaliana","DEAD-box ATP-dependent RNA helicase 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB89]","protein_coding"
"At5g66410","No alias","Arabidopsis thaliana","PLP3b [Source:UniProtKB/TrEMBL;Acc:A0A178URB4]","protein_coding"
"At5g66540","No alias","Arabidopsis thaliana","U3 small nucleolar ribonucleoprotein protein MPP10 [Source:UniProtKB/TrEMBL;Acc:Q9FJY5]","protein_coding"
"Bradi1g02180","No alias","Brachypodium distachyon","F-box/RNI-like/FBD-like domains-containing protein","protein_coding"
"Bradi1g03030","No alias","Brachypodium distachyon","pumilio 24","protein_coding"
"Bradi1g05110","No alias","Brachypodium distachyon","RNA-binding (RRM/RBD/RNP motifs) family protein","protein_coding"
"Bradi1g05130","No alias","Brachypodium distachyon","Forkhead-associated (FHA) domain-containing protein","protein_coding"
"Bradi1g05590","No alias","Brachypodium distachyon","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Bradi1g06220","No alias","Brachypodium distachyon","ribosomal protein L23AB","protein_coding"
"Bradi1g09530","No alias","Brachypodium distachyon","Transducin family protein / WD-40 repeat family protein","protein_coding"
"Bradi1g10590","No alias","Brachypodium distachyon","cytochrome c oxidase assembly protein CtaG / Cox11 family","protein_coding"
"Bradi1g11730","No alias","Brachypodium distachyon","pescadillo-related","protein_coding"
"Bradi1g15370","No alias","Brachypodium distachyon","lysyl-tRNA synthetase 1","protein_coding"
"Bradi1g15810","No alias","Brachypodium distachyon","RNA polymerase I subunit 43","protein_coding"
"Bradi1g18440","No alias","Brachypodium distachyon","NOP56-like pre RNA processing ribonucleoprotein","protein_coding"
"Bradi1g18460","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi1g18790","No alias","Brachypodium distachyon","ubiquitin-specific protease 24","protein_coding"
"Bradi1g21440","No alias","Brachypodium distachyon","Pyridoxal phosphate (PLP)-dependent transferases superfamily protein","protein_coding"
"Bradi1g22510","No alias","Brachypodium distachyon","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Bradi1g23750","No alias","Brachypodium distachyon","ARM repeat superfamily protein","protein_coding"
"Bradi1g24690","No alias","Brachypodium distachyon","IKI3 family protein","protein_coding"
"Bradi1g26010","No alias","Brachypodium distachyon","Zinc-binding ribosomal protein family protein","protein_coding"
"Bradi1g28750","No alias","Brachypodium distachyon","Zinc-binding ribosomal protein family protein","protein_coding"
"Bradi1g30610","No alias","Brachypodium distachyon","tRNA synthetase class I (I, L, M and V) family protein","protein_coding"
"Bradi1g32610","No alias","Brachypodium distachyon","UDP-Glycosyltransferase superfamily protein","protein_coding"
"Bradi1g33117","No alias","Brachypodium distachyon","NUP50 (Nucleoporin 50 kDa) protein","protein_coding"
"Bradi1g36340","No alias","Brachypodium distachyon","Ribosomal protein S5/Elongation factor G/III/V family protein","protein_coding"
"Bradi1g41930","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi1g42660","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi1g46650","No alias","Brachypodium distachyon","Nucleolar GTP-binding protein","protein_coding"
"Bradi1g49760","No alias","Brachypodium distachyon","T-complex protein 1 alpha subunit","protein_coding"
"Bradi1g50950","No alias","Brachypodium distachyon","Cytidine/deoxycytidylate deaminase family protein","protein_coding"
"Bradi1g51130","No alias","Brachypodium distachyon","protein arginine methyltransferase 10","protein_coding"
"Bradi1g52230","No alias","Brachypodium distachyon","RNA helicase, ATP-dependent, SK12/DOB1 protein","protein_coding"
"Bradi1g53920","No alias","Brachypodium distachyon","eukaryotic translation initiation factor 3E","protein_coding"
"Bradi1g54807","No alias","Brachypodium distachyon","RNAligase","protein_coding"
"Bradi1g59410","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi1g62590","No alias","Brachypodium distachyon","ARM repeat superfamily protein","protein_coding"
"Bradi1g62850","No alias","Brachypodium distachyon","U3 ribonucleoprotein (Utp) family protein","protein_coding"
"Bradi1g63330","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi1g66040","No alias","Brachypodium distachyon","Ribosomal protein S24e family protein","protein_coding"
"Bradi1g67050","No alias","Brachypodium distachyon","Leucine-rich repeat protein kinase family protein","protein_coding"
"Bradi1g70450","No alias","Brachypodium distachyon","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Bradi1g71090","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi1g74150","No alias","Brachypodium distachyon","pfkB-like carbohydrate kinase family protein","protein_coding"
"Bradi1g75910","No alias","Brachypodium distachyon","voltage dependent anion channel 4","protein_coding"
"Bradi1g76677","No alias","Brachypodium distachyon","SMAD/FHA domain-containing protein","protein_coding"
"Bradi2g01550","No alias","Brachypodium distachyon","eukaryotic translation initiation factor 3A","protein_coding"
"Bradi2g03960","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi2g04960","No alias","Brachypodium distachyon","valyl-tRNA synthetase / valine--tRNA ligase (VALRS)","protein_coding"
"Bradi2g08900","No alias","Brachypodium distachyon","seryl-tRNA synthetase / serine--tRNA ligase","protein_coding"
"Bradi2g09860","No alias","Brachypodium distachyon","LA RNA-binding protein","protein_coding"
"Bradi2g10180","No alias","Brachypodium distachyon","Glutamyl/glutaminyl-tRNA synthetase, class Ic","protein_coding"
"Bradi2g14120","No alias","Brachypodium distachyon","histone deacetylase 2B","protein_coding"
"Bradi2g14350","No alias","Brachypodium distachyon","MAK16 protein-related","protein_coding"
"Bradi2g16500","No alias","Brachypodium distachyon","TCP-1/cpn60 chaperonin family protein","protein_coding"
"Bradi2g24390","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi2g25950","No alias","Brachypodium distachyon","cobalt ion transmembrane transporters","protein_coding"
"Bradi2g28680","No alias","Brachypodium distachyon","metallopeptidase M24 family protein","protein_coding"
"Bradi2g32300","No alias","Brachypodium distachyon","ATP binding microtubule motor family protein","protein_coding"
"Bradi2g34970","No alias","Brachypodium distachyon","lipoamide dehydrogenase 1","protein_coding"
"Bradi2g35680","No alias","Brachypodium distachyon","Class II aaRS and biotin synthetases superfamily protein","protein_coding"
"Bradi2g39810","No alias","Brachypodium distachyon","eukaryotic translation initiation factor 2","protein_coding"
"Bradi2g40807","No alias","Brachypodium distachyon","DEAD/DEAH box RNA helicase family protein","protein_coding"
"Bradi2g46970","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi2g50330","No alias","Brachypodium distachyon","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Bradi2g53220","No alias","Brachypodium distachyon","ribosomal protein L24","protein_coding"
"Bradi2g57720","No alias","Brachypodium distachyon","Ribosomal RNA processing Brix domain protein","protein_coding"
"Bradi2g61300","No alias","Brachypodium distachyon","ARM repeat superfamily protein","protein_coding"
"Bradi2g61436","No alias","Brachypodium distachyon","glucose-inhibited division family A protein","protein_coding"
"Bradi3g01483","No alias","Brachypodium distachyon","transcription factor IIIA","protein_coding"
"Bradi3g04130","No alias","Brachypodium distachyon","TCP-1/cpn60 chaperonin family protein","protein_coding"
"Bradi3g10437","No alias","Brachypodium distachyon","FAR1-related sequence 5","protein_coding"
"Bradi3g11327","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi3g11450","No alias","Brachypodium distachyon","negative regulator of systemic acquired resistance (SNI1)","protein_coding"
"Bradi3g15000","No alias","Brachypodium distachyon","Ribosomal RNA adenine dimethylase family protein","protein_coding"
"Bradi3g17200","No alias","Brachypodium distachyon","Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial","protein_coding"
"Bradi3g19960","No alias","Brachypodium distachyon","Threonyl-tRNA synthetase","protein_coding"
"Bradi3g22387","No alias","Brachypodium distachyon","aspartate kinase-homoserine dehydrogenase ii","protein_coding"
"Bradi3g23020","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi3g27252","No alias","Brachypodium distachyon","Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain","protein_coding"
"Bradi3g31430","No alias","Brachypodium distachyon","homolog of yeast oxidase assembly 1 (OXA1)","protein_coding"
"Bradi3g32630","No alias","Brachypodium distachyon","UDP-Glycosyltransferase superfamily protein","protein_coding"
"Bradi3g33890","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi3g38917","No alias","Brachypodium distachyon","ribosomal protein L24","protein_coding"
"Bradi3g46800","No alias","Brachypodium distachyon","NAP1-related protein 2","protein_coding"
"Bradi3g48210","No alias","Brachypodium distachyon","Eukaryotic translation initiation factor eIF2A family protein","protein_coding"
"Bradi3g48510","No alias","Brachypodium distachyon","pentatricopeptide (PPR) repeat-containing protein","protein_coding"
"Bradi3g48600","No alias","Brachypodium distachyon","Nucleic acid-binding, OB-fold-like protein","protein_coding"
"Bradi3g50020","No alias","Brachypodium distachyon","shortage in chiasmata 1","protein_coding"
"Bradi3g51060","No alias","Brachypodium distachyon","Mitochondrial substrate carrier family protein","protein_coding"
"Bradi3g52006","No alias","Brachypodium distachyon","Metal-dependent protein hydrolase","protein_coding"
"Bradi3g52980","No alias","Brachypodium distachyon","histidinol phosphate aminotransferase 1","protein_coding"
"Bradi3g58740","No alias","Brachypodium distachyon","APR-like 4","protein_coding"
"Bradi3g60080","No alias","Brachypodium distachyon","ARM repeat superfamily protein","protein_coding"
"Bradi3g60762","No alias","Brachypodium distachyon","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"Bradi4g01080","No alias","Brachypodium distachyon","Noc2p family","protein_coding"
"Bradi4g02587","No alias","Brachypodium distachyon","eukaryotic translation initiation factor 2 gamma subunit","protein_coding"
"Bradi4g06840","No alias","Brachypodium distachyon","glycine-rich RNA-binding protein 3","protein_coding"
"Bradi4g07810","No alias","Brachypodium distachyon","thymidylate synthase 1","protein_coding"
"Bradi4g08430","No alias","Brachypodium distachyon","poly(A) binding protein 8","protein_coding"
"Bradi4g08880","No alias","Brachypodium distachyon","DNA/RNA polymerases superfamily protein","protein_coding"
"Bradi4g14097","No alias","Brachypodium distachyon","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"Bradi4g16160","No alias","Brachypodium distachyon","THUMP domain-containing protein","protein_coding"
"Bradi4g20557","No alias","Brachypodium distachyon","diphthamide synthesis DPH2 family protein","protein_coding"
"Bradi4g20840","No alias","Brachypodium distachyon","ACT domain-containing small subunit of acetolactate synthase protein","protein_coding"
"Bradi4g30730","No alias","Brachypodium distachyon","eukaryotic translation initiation factor 3C","protein_coding"
"Bradi4g30780","No alias","Brachypodium distachyon","eukaryotic translation initiation factor 3C","protein_coding"
"Bradi4g31410","No alias","Brachypodium distachyon","Ribosomal RNA processing Brix domain protein","protein_coding"
"Bradi4g35440","No alias","Brachypodium distachyon","inositol 1,3,4-trisphosphate 5/6-kinase 4","protein_coding"
"Bradi4g41050","No alias","Brachypodium distachyon","ribosomal protein 5B","protein_coding"
"Bradi4g41160","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi4g42692","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi5g01730","No alias","Brachypodium distachyon","FMN-linked oxidoreductases superfamily protein","protein_coding"
"Bradi5g04020","No alias","Brachypodium distachyon","glucose-6-phosphate dehydrogenase 2","protein_coding"
"Bradi5g07240","No alias","Brachypodium distachyon","translation initiation factor 3 subunit H1","protein_coding"
"Bradi5g09230","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi5g12910","No alias","Brachypodium distachyon","eukaryotic translation initiation factor 3C","protein_coding"
"Bradi5g13190","No alias","Brachypodium distachyon","purine biosynthesis 4","protein_coding"
"Bradi5g14030","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi5g14250","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi5g14750","No alias","Brachypodium distachyon","ribosomal protein L23AB","protein_coding"
"Bradi5g15377","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi5g17540","No alias","Brachypodium distachyon","ARM repeat superfamily protein","protein_coding"
"Bradi5g18300","No alias","Brachypodium distachyon","Pseudouridine synthase family protein","protein_coding"
"Bradi5g22790","No alias","Brachypodium distachyon","ARM repeat superfamily protein","protein_coding"
"Bradi5g24311","No alias","Brachypodium distachyon","Wall-associated kinase family protein","protein_coding"
"Bradi5g24895","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Brara.A00018.1","No alias","Brassica rapa","tRNA dihydrouridine synthase","protein_coding"
"Brara.A00518.1","No alias","Brassica rapa","nascent RNA chaperone *(LA)","protein_coding"
"Brara.A00580.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A00883.1","No alias","Brassica rapa","regulatory protein *(RGG) of mRNA quality control","protein_coding"
"Brara.A00999.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A01535.1","No alias","Brassica rapa","peptidyl-prolyl cis-trans isomerase *(FKBP43/53)","protein_coding"
"Brara.A01555.1","No alias","Brassica rapa","methyltransferase component *(Nop1/fibrillarin) of snoRNP rRNA methylation complex","protein_coding"
"Brara.A01570.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A01985.1","No alias","Brassica rapa","SSU processome assembly factor *(UTP12)","protein_coding"
"Brara.A02480.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A02572.1","No alias","Brassica rapa","component *(mS76) of small mitoribosomal-subunit proteome & component *(mS78/mS79) of small mitoribosomal-subunit proteome","protein_coding"
"Brara.A02724.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A02923.1","No alias","Brassica rapa","ssDNA-binding protein *(SSB)","protein_coding"
"Brara.A03036.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A03134.1","No alias","Brassica rapa","assembly factor involved in ITS1 rRNA removal *(BRIX1)","protein_coding"
"Brara.A03258.1","No alias","Brassica rapa","methylation reader *(ECT)","protein_coding"
"Brara.A03285.1","No alias","Brassica rapa","component *(mS78/mS79) of small mitoribosomal-subunit proteome","protein_coding"
"Brara.A03327.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A03778.1","No alias","Brassica rapa","component *(uS9) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Brara.B00272.1","No alias","Brassica rapa","core component *(NHP2) of H/ACA snoRNP RNA pseudouridylation complex","protein_coding"
"Brara.B00618.1","No alias","Brassica rapa","nuclear-encoded organellar RNA polymerase *(NEP)","protein_coding"
"Brara.B00620.1","No alias","Brassica rapa","SSU processome assembly factor *(IMP3)","protein_coding"
"Brara.B00686.1","No alias","Brassica rapa","regulatory protein *(SBA) of mitochondrial nucleoid organization","protein_coding"
"Brara.B00987.1","No alias","Brassica rapa","HD2-type histone deacetylase *(HD2/HDT)","protein_coding"
"Brara.B01386.1","No alias","Brassica rapa","type-I arginine N-methyltransferase *(PRMT10)","protein_coding"
"Brara.B01734.1","No alias","Brassica rapa","replication fork tethering component *(POLA2) of DNA polymerase alpha complex","protein_coding"
"Brara.B01836.1","No alias","Brassica rapa","SSU processome assembly factor *(UTP2/NOP14)","protein_coding"
"Brara.B02397.1","No alias","Brassica rapa","component *(uL30) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Brara.B03060.1","No alias","Brassica rapa","pre-rRNA cleavage factor involved in ITS1 rRNA removal *(SLX9/SAHY)","protein_coding"
"Brara.B03300.1","No alias","Brassica rapa","component *(eIF3i) of eIF3 mRNA-to-PIC binding complex","protein_coding"
"Brara.B03590.1","No alias","Brassica rapa","mRNA-translocation factor *(eEF2))","protein_coding"
"Brara.B03607.1","No alias","Brassica rapa","glutamate-tRNA ligase","protein_coding"
"Brara.B03814.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.C00165.1","No alias","Brassica rapa","virus infection resistance factor *(BTR1)","protein_coding"
"Brara.C00633.1","No alias","Brassica rapa","phosphorolytic exoribonuclease *(PNP) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Brara.C02216.1","No alias","Brassica rapa","regulatory protein *(THAL) of rRNA transcription control","protein_coding"
"Brara.C02279.1","No alias","Brassica rapa","component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex","protein_coding"
"Brara.C02436.1","No alias","Brassica rapa","non-catalytic component *(Dpb2) of DNA polymerase epsilon complex","protein_coding"
"Brara.C03069.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.C03191.1","No alias","Brassica rapa","regulatory GTPase (NUG1/NSN1) of LSU processome","protein_coding"
"Brara.C03437.1","No alias","Brassica rapa","scaffold component *(Nop56) of snoRNP rRNA methylation complex","protein_coding"
"Brara.C03552.1","No alias","Brassica rapa","RNA editing factor *(MORF)","protein_coding"
"Brara.C03640.1","No alias","Brassica rapa","S-adenosyl methionine synthetase & EC_2.5 transferase transferring alkyl or aryl group, other than methyl group","protein_coding"
"Brara.C04147.1","No alias","Brassica rapa","component *(MCM4) of MCM replicative DNA helicase complex","protein_coding"
"Brara.C04220.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.C04302.1","No alias","Brassica rapa","pre-40S ribosomal-subunit proteome nuclear export factor *(Ltv1)","protein_coding"
"Brara.C04376.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.D00229.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.D00639.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.D00698.1","No alias","Brassica rapa","EC_6.1 ligase forming carbon-oxygen bond & methionine-tRNA ligase","protein_coding"
"Brara.D00984.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.D01131.1","No alias","Brassica rapa","pre-rRNA processing endonuclease involved in ITS1 rRNA removal *(NOB1)","protein_coding"
"Brara.D02079.1","No alias","Brassica rapa","subunit alpha of co-translational insertion system Sec61 subcomplex","protein_coding"
"Brara.D02158.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.D02321.1","No alias","Brassica rapa","component *(ARRS1) of ARPF2-ARRS1 complex","protein_coding"
"Brara.E00338.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.E01401.1","No alias","Brassica rapa","RNA editing factor *(ORRM3)","protein_coding"
"Brara.E01715.1","No alias","Brassica rapa","regulatory protein *(NCL) of rRNA transcription","protein_coding"
"Brara.E01722.1","No alias","Brassica rapa","group-II intron splicing RNA helicase *(PMH)","protein_coding"
"Brara.E01911.1","No alias","Brassica rapa","component *(RACK1) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Brara.E02180.1","No alias","Brassica rapa","solute transporter *(MTCC)","protein_coding"
"Brara.E02336.1","No alias","Brassica rapa","regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway","protein_coding"
"Brara.E02389.1","No alias","Brassica rapa","subunit delta *(CCT4) of CCT chaperonin folding complex","protein_coding"
"Brara.E02594.1","No alias","Brassica rapa","assembly factor involved in ITS1 rRNA removal *(BRIX1)","protein_coding"
"Brara.E02636.1","No alias","Brassica rapa","RNA editing factor *(MORF)","protein_coding"
"Brara.E02748.1","No alias","Brassica rapa","PERK-related protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Brara.E02790.1","No alias","Brassica rapa","pre-40S ribosomal-subunit proteome nuclear export factor *(Dim2)","protein_coding"
"Brara.E02852.1","No alias","Brassica rapa","subunit alpha of NAC ribosome-associated chaperone complex","protein_coding"
"Brara.E02860.1","No alias","Brassica rapa","ribosomal protein arginine N-methyltransferase *(PRMT3)","protein_coding"
"Brara.E03242.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.E03274.1","No alias","Brassica rapa","SSU processome assembly factor *(UTP10)","protein_coding"
"Brara.E03571.1","No alias","Brassica rapa","component *(eS7) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Brara.F00004.1","No alias","Brassica rapa","scaffold component *(Nop56) of snoRNP rRNA methylation complex","protein_coding"
"Brara.F00342.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F00386.1","No alias","Brassica rapa","regulatory protein *(NCL) of rRNA transcription","protein_coding"
"Brara.F01064.1","No alias","Brassica rapa","RNA editing factor *(POCO)","protein_coding"
"Brara.F01748.1","No alias","Brassica rapa","malate dehydrogenase component of AAA-ATPase motor complex","protein_coding"
"Brara.F01803.1","No alias","Brassica rapa","RING-H2-class BTL-subclass E3 ubiquitin ligase","protein_coding"
"Brara.F02050.1","No alias","Brassica rapa","membrane-anchored lectin chaperone *(CNX)","protein_coding"
"Brara.F02052.1","No alias","Brassica rapa","pre-60S ribosomal subunit assembly factor *(SSF1)","protein_coding"
"Brara.F02320.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F02881.1","No alias","Brassica rapa","scaffold component *(Nop58) of snoRNP rRNA methylation complex","protein_coding"
"Brara.F02897.1","No alias","Brassica rapa","Trihelix-type transcription factor","protein_coding"
"Brara.F03274.1","No alias","Brassica rapa","component *(TRM11) of TRM11-TRM112 tRNA guanosine-methyltransferase complex","protein_coding"
"Brara.F03700.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F03753.1","No alias","Brassica rapa","component *(eIF3d) of eIF3 mRNA-to-PIC binding complex","protein_coding"
"Brara.G00336.1","No alias","Brassica rapa","subunit gamma of cargo adaptor F-subcomplex","protein_coding"
"Brara.G00543.1","No alias","Brassica rapa","SSU processome assembly factor *(ENP1)","protein_coding"
"Brara.G01517.1","No alias","Brassica rapa","component *(eS10) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Brara.G01728.1","No alias","Brassica rapa","pseudouridine synthase component *(Nap57/CBF5) of H/ACA snoRNP RNA pseudouridylation complex","protein_coding"
"Brara.G01811.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.G02029.1","No alias","Brassica rapa","RNA editing factor *(POCO)","protein_coding"
"Brara.G02435.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.G02623.1","No alias","Brassica rapa","component *(CSL4) of exosome EXO9 core complex","protein_coding"
"Brara.G03079.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.G03129.1","No alias","Brassica rapa","component *(NOC1) of ribosomal-subunit proteome nuclear export complex","protein_coding"
"Brara.H00011.1","No alias","Brassica rapa","scaffold component *(Nop56) of snoRNP rRNA methylation complex","protein_coding"
"Brara.H00330.1","No alias","Brassica rapa","regulatory protein *(NCL) of rRNA transcription","protein_coding"
"Brara.H00482.1","No alias","Brassica rapa","RNA editing factor *(ORRM3)","protein_coding"
"Brara.H00568.1","No alias","Brassica rapa","protease *(Deg)","protein_coding"
"Brara.H00932.1","No alias","Brassica rapa","regulatory protein *(RGG) of mRNA quality control","protein_coding"
"Brara.H01495.1","No alias","Brassica rapa","SSU processome assembly factor *(UTP6)","protein_coding"
"Brara.H01686.1","No alias","Brassica rapa","component *(mL103) of large mitoribosomal-subunit proteome & component *(mS78/mS79) of small mitoribosomal-subunit proteome","protein_coding"
"Brara.H01743.1","No alias","Brassica rapa","chaperone HSCA of mitochondrial ISC system transfer phase & chaperone component *(mtHSP70) of inner mitochondrion membrane TIM translocation system & chaperone *(mtHsc70))","protein_coding"
"Brara.H01902.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.H02022.1","No alias","Brassica rapa","BBX class-II transcription factor","protein_coding"
"Brara.H02216.1","No alias","Brassica rapa","component *(uL15) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Brara.H02588.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.H03125.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I00439.1","No alias","Brassica rapa","scaffold component *(Nop58) of snoRNP rRNA methylation complex","protein_coding"
"Brara.I00645.1","No alias","Brassica rapa","RNA editing factor *(ORRM3)","protein_coding"
"Brara.I01216.1","No alias","Brassica rapa","component *(RFC2) of PCNA sliding clamp loader complex","protein_coding"
"Brara.I01380.1","No alias","Brassica rapa","SSU processome assembly factor *(IMP4)","protein_coding"
"Brara.I01387.1","No alias","Brassica rapa","GMP synthetase *(GMPS) & EC_6.3 ligase forming carbon-nitrogen bond","protein_coding"
"Brara.I01839.1","No alias","Brassica rapa","component *(eIF3d) of eIF3 mRNA-to-PIC binding complex","protein_coding"
"Brara.I02128.1","No alias","Brassica rapa","SSU processome assembly factor *(RRP9/YAO1)","protein_coding"
"Brara.I02241.1","No alias","Brassica rapa","regulatory protein *(EHD) involved in endocytic recycling","protein_coding"
"Brara.I02573.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I02893.1","No alias","Brassica rapa","pre-60S ribosomal subunit assembly factor *(NSA1)","protein_coding"
"Brara.I03013.1","No alias","Brassica rapa","SSU processome assembly factor *(UTP4/PCN)","protein_coding"
"Brara.I03364.1","No alias","Brassica rapa","component *(TRM112) of TRM11-TRM112 tRNA guanosine-methyltransferase complex & component *(TRM112) of TRM9-TRM112 tRNA uridine-methyltransferase complex","protein_coding"
"Brara.I03669.1","No alias","Brassica rapa","EC_1.1 oxidoreductase acting on CH-OH group of donor","protein_coding"
"Brara.I03781.1","No alias","Brassica rapa","component *(uL23) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Brara.I03803.1","No alias","Brassica rapa","component *(NOC2) of ribosomal-subunit proteome nuclear export complexes","protein_coding"
"Brara.I03983.1","No alias","Brassica rapa","component *(NRPA1) of RNA polymerase I complex","protein_coding"
"Brara.I04091.1","No alias","Brassica rapa","mitotic-specific Kleisin-type component *(SCC1) of cohesin regulator complex","protein_coding"
"Brara.I04553.1","No alias","Brassica rapa","DNA methyltransferase *(MET)","protein_coding"
"Brara.I04730.1","No alias","Brassica rapa","substrate adaptor *(HTD1/DWD1) of CUL4-based E3 ubiquitin ligase complex","protein_coding"
"Brara.I05045.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I05242.1","No alias","Brassica rapa","amino acid transporter *(AAP)","protein_coding"
"Brara.I05514.1","No alias","Brassica rapa","component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination heterodimer","protein_coding"
"Brara.J00055.1","No alias","Brassica rapa","A1-class (Pepsin) protease & EC_3.4 hydrolase acting on peptide bond (peptidase)","protein_coding"
"Brara.J00137.1","No alias","Brassica rapa","pre-60S ribosomal subunit assembly factor *(NOP16)","protein_coding"
"Brara.J00189.1","No alias","Brassica rapa","non-core component *(NAF1) of H/ACA snoRNP RNA pseudouridylation complex","protein_coding"
"Brara.J00614.1","No alias","Brassica rapa","assembly chaperone (CBP3/UQCC1) of cytochrome c reductase complex","protein_coding"
"Brara.J00971.1","No alias","Brassica rapa","nucleotide exchange factor *(MGE)","protein_coding"
"Brara.J01452.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.J01477.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.J01916.1","No alias","Brassica rapa","subunit beta of phenylalanine-tRNA ligase complex","protein_coding"
"Brara.J02384.1","No alias","Brassica rapa","receptor component *(OM64) of outer mitochondrion membrane TOM translocation system","protein_coding"
"Brara.J02414.1","No alias","Brassica rapa","pyruvate kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Brara.J02568.1","No alias","Brassica rapa","histone demethylase *(JMJD6)","protein_coding"
"Brara.J02584.1","No alias","Brassica rapa","LSU processome maturation factor *(NSA2)","protein_coding"
"Brara.J02725.1","No alias","Brassica rapa","pre-60S ribosomal subunit assembly factor *(NOP15)","protein_coding"
"Brara.J02853.1","No alias","Brassica rapa","component *(TOP6A) of somatic DNA topoisomerase VI complex","protein_coding"
"Brara.K00178.1","No alias","Brassica rapa","component *(eS10) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Brara.K00179.1","No alias","Brassica rapa","MRM2-type rRNA methyltransferase","protein_coding"
"Brara.K00282.1","No alias","Brassica rapa","DNA bending architectural protein *(HMG-B)","protein_coding"
"Brara.K00510.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.K01439.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Cre01.g009950","No alias","Chlamydomonas reinhardtii","nucleolar essential protein-related","protein_coding"
"Cre01.g012350","No alias","Chlamydomonas reinhardtii","DNA polymerase V family","protein_coding"
"Cre01.g018950","No alias","Chlamydomonas reinhardtii","deoxyhypusine synthase","protein_coding"
"Cre01.g019200","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre01.g020950","No alias","Chlamydomonas reinhardtii","ribosome biogenesis regulatory protein (RRS1) family protein","protein_coding"
"Cre01.g021150","No alias","Chlamydomonas reinhardtii","RNA methyltransferase family protein","protein_coding"
"Cre01.g022350","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre01.g024100","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre01.g031750","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre01.g033832","No alias","Chlamydomonas reinhardtii","RH39","protein_coding"
"Cre01.g034300","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre01.g035000","No alias","Chlamydomonas reinhardtii","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"Cre01.g036600","No alias","Chlamydomonas reinhardtii","small RNA degrading nuclease 3","protein_coding"
"Cre01.g042900","No alias","Chlamydomonas reinhardtii","Ribosomal RNA adenine dimethylase family protein","protein_coding"
"Cre01.g048950","No alias","Chlamydomonas reinhardtii","uridine 5\'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)","protein_coding"
"Cre01.g049750","No alias","Chlamydomonas reinhardtii","protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases","protein_coding"
"Cre01.g052200","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre01.g054000","No alias","Chlamydomonas reinhardtii","D111/G-patch domain-containing protein","protein_coding"
"Cre01.g063267","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre01.g068377","No alias","Chlamydomonas reinhardtii","CCAAT-binding factor","protein_coding"
"Cre02.g082300","No alias","Chlamydomonas reinhardtii","Surfeit locus protein 6","protein_coding"
"Cre02.g084600","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre02.g085950","No alias","Chlamydomonas reinhardtii","Protein of unknown function (DUF3223)","protein_coding"
"Cre02.g090400","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre02.g092900","No alias","Chlamydomonas reinhardtii","GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative","protein_coding"
"Cre02.g095400","No alias","Chlamydomonas reinhardtii","Ribosomal RNA processing Brix domain protein","protein_coding"
"Cre02.g095850","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre02.g103050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre02.g109050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre02.g145000","No alias","Chlamydomonas reinhardtii","ribosome-binding factor A family protein","protein_coding"
"Cre02.g146000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre03.g150350","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre03.g155850","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre03.g156150","No alias","Chlamydomonas reinhardtii","DEA(D/H)-box RNA helicase family protein","protein_coding"
"Cre03.g183250","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre03.g188200","No alias","Chlamydomonas reinhardtii","3\'-5\'-exoribonuclease family protein","protein_coding"
"Cre03.g190850","No alias","Chlamydomonas reinhardtii","ATP-dependent caseinolytic (Clp) protease/crotonase family protein","protein_coding"
"Cre03.g191950","No alias","Chlamydomonas reinhardtii","16S rRNA processing protein RimM family","protein_coding"
"Cre03.g192600","No alias","Chlamydomonas reinhardtii","Thymidine kinase","protein_coding"
"Cre03.g193150","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre03.g195850","No alias","Chlamydomonas reinhardtii","methionine sulfoxide reductase B 1","protein_coding"
"Cre03.g196850","No alias","Chlamydomonas reinhardtii","transducin family protein / WD-40 repeat family protein","protein_coding"
"Cre04.g214690","No alias","Chlamydomonas reinhardtii","ribonuclease Ps","protein_coding"
"Cre04.g215350","No alias","Chlamydomonas reinhardtii","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"Cre04.g218000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre04.g218300","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre04.g222950","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre05.g234050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre05.g237700","No alias","Chlamydomonas reinhardtii","nucleolar RNA-binding Nop10p family protein","protein_coding"
"Cre06.g248800","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre06.g254150","No alias","Chlamydomonas reinhardtii","periodic tryptophan protein 2","protein_coding"
"Cre06.g255950","No alias","Chlamydomonas reinhardtii","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"Cre06.g260850","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre06.g264000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre06.g264500","No alias","Chlamydomonas reinhardtii","RNA-binding (RRM/RBD/RNP motifs) family protein","protein_coding"
"Cre06.g266800","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre06.g273413","No alias","Chlamydomonas reinhardtii","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding"
"Cre06.g277050","No alias","Chlamydomonas reinhardtii","ARM repeat superfamily protein","protein_coding"
"Cre06.g278147","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre06.g283300","No alias","Chlamydomonas reinhardtii","Ankyrin repeat family protein","protein_coding"
"Cre06.g292550","No alias","Chlamydomonas reinhardtii","type one serine/threonine protein phosphatase 4","protein_coding"
"Cre06.g296350","No alias","Chlamydomonas reinhardtii","UB-like protease 1A","protein_coding"
"Cre07.g314900","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre07.g314950","No alias","Chlamydomonas reinhardtii","DNA binding;DNA-directed RNA polymerases","protein_coding"
"Cre07.g318702","No alias","Chlamydomonas reinhardtii","nucleotide binding;protein binding","protein_coding"
"Cre07.g319900","No alias","Chlamydomonas reinhardtii","PNAS-3 related","protein_coding"
"Cre07.g322176","No alias","Chlamydomonas reinhardtii","nuclear RNA polymerase A2","protein_coding"
"Cre07.g325712","No alias","Chlamydomonas reinhardtii","Ribosomal protein L24e family protein","protein_coding"
"Cre07.g332800","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre07.g340550","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre07.g344050","No alias","Chlamydomonas reinhardtii","Transducin family protein / WD-40 repeat family protein","protein_coding"
"Cre07.g347850","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre07.g348250","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre07.g349300","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre07.g349400","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre07.g351300","No alias","Chlamydomonas reinhardtii","Class II aaRS and biotin synthetases superfamily protein","protein_coding"
"Cre07.g352300","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre08.g359100","No alias","Chlamydomonas reinhardtii","methyltransferases;nucleic acid binding","protein_coding"
"Cre08.g370601","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre08.g374800","No alias","Chlamydomonas reinhardtii","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"Cre09.g387100","No alias","Chlamydomonas reinhardtii","5\'-AMP-activated protein kinase-related","protein_coding"
"Cre09.g388850","No alias","Chlamydomonas reinhardtii","autoinhibited Ca(2+)-ATPase 10","protein_coding"
"Cre09.g391652","No alias","Chlamydomonas reinhardtii","Noc2p family","protein_coding"
"Cre09.g392950","No alias","Chlamydomonas reinhardtii","tRNA/rRNA methyltransferase (SpoU) family protein","protein_coding"
"Cre09.g394399","No alias","Chlamydomonas reinhardtii","Sas10/U3 ribonucleoprotein (Utp) family protein","protein_coding"
"Cre09.g395600","No alias","Chlamydomonas reinhardtii","GTP1/OBG family protein","protein_coding"
"Cre09.g400627","No alias","Chlamydomonas reinhardtii","Polyketide cyclase / dehydrase and lipid transport protein","protein_coding"
"Cre09.g401663","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre09.g403400","No alias","Chlamydomonas reinhardtii","XB3 ortholog 1 in Arabidopsis thaliana","protein_coding"
"Cre09.g407850","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre09.g410500","No alias","Chlamydomonas reinhardtii","Nucleotidyltransferase family protein","protein_coding"
"Cre10.g417650","No alias","Chlamydomonas reinhardtii","AGAMOUS-like 26","protein_coding"
"Cre10.g417950","No alias","Chlamydomonas reinhardtii","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"Cre10.g420900","No alias","Chlamydomonas reinhardtii","DEA(D/H)-box RNA helicase family protein","protein_coding"
"Cre10.g421200","No alias","Chlamydomonas reinhardtii","RNA-binding CRS1 / YhbY (CRM) domain protein","protein_coding"
"Cre10.g435900","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre10.g438700","No alias","Chlamydomonas reinhardtii","transducin family protein / WD-40 repeat family protein","protein_coding"
"Cre10.g441400","No alias","Chlamydomonas reinhardtii","NOP56-like pre RNA processing ribonucleoprotein","protein_coding"
"Cre10.g441450","No alias","Chlamydomonas reinhardtii","KRR1 family protein","protein_coding"
"Cre10.g442000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre10.g442650","No alias","Chlamydomonas reinhardtii","DNA-binding protein, putative","protein_coding"
"Cre10.g445600","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre10.g452500","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre10.g466250","No alias","Chlamydomonas reinhardtii","transducin family protein / WD-40 repeat family protein","protein_coding"
"Cre10.g466450","No alias","Chlamydomonas reinhardtii","chloroplast RNA-binding protein 29","protein_coding"
"Cre12.g484100","No alias","Chlamydomonas reinhardtii","RNApolymerase 14 kDa subunit","protein_coding"
"Cre12.g485950","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g502300","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g502800","No alias","Chlamydomonas reinhardtii","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"Cre12.g505200","No alias","Chlamydomonas reinhardtii","DEA(D/H)-box RNA helicase family protein","protein_coding"
"Cre12.g509600","No alias","Chlamydomonas reinhardtii","Cytidine/deoxycytidylate deaminase family protein","protein_coding"
"Cre12.g512550","No alias","Chlamydomonas reinhardtii","Trm112p-like protein","protein_coding"
"Cre12.g519550","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g520200","No alias","Chlamydomonas reinhardtii","Pyridoxamine 5\'-phosphate oxidase family protein","protein_coding"
"Cre12.g526850","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre12.g528950","No alias","Chlamydomonas reinhardtii","pumilio 24","protein_coding"
"Cre12.g529500","No alias","Chlamydomonas reinhardtii","FtsJ-like methyltransferase family protein","protein_coding"
"Cre12.g529600","No alias","Chlamydomonas reinhardtii","nuclear RNA polymerase A1","protein_coding"
"Cre12.g533050","No alias","Chlamydomonas reinhardtii","GTP-binding family protein","protein_coding"
"Cre12.g538500","No alias","Chlamydomonas reinhardtii","transducin family protein / WD-40 repeat family protein","protein_coding"
"Cre12.g540200","No alias","Chlamydomonas reinhardtii","DEA(D/H)-box RNA helicase family protein","protein_coding"
"Cre12.g540450","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g549700","No alias","Chlamydomonas reinhardtii","RNA-binding KH domain-containing protein","protein_coding"
"Cre12.g560250","No alias","Chlamydomonas reinhardtii","Protein of unknown function, DUF647","protein_coding"
"Cre13.g566300","No alias","Chlamydomonas reinhardtii","methyltransferases","protein_coding"
"Cre13.g571650","No alias","Chlamydomonas reinhardtii","RNA polymerases N / 8 kDa subunit","protein_coding"
"Cre13.g571950","No alias","Chlamydomonas reinhardtii","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding"
"Cre13.g576350","No alias","Chlamydomonas reinhardtii","Prefoldin chaperone subunit family protein","protein_coding"
"Cre13.g587000","No alias","Chlamydomonas reinhardtii","rRNA processing protein-related","protein_coding"
"Cre13.g606850","No alias","Chlamydomonas reinhardtii","Transducin family protein / WD-40 repeat family protein","protein_coding"
"Cre15.g636896","No alias","Chlamydomonas reinhardtii","Aldolase-type TIM barrel family protein","protein_coding"
"Cre15.g640250","No alias","Chlamydomonas reinhardtii","nonsense-mediated mRNA decay NMD3 family protein","protein_coding"
"Cre16.g649600","No alias","Chlamydomonas reinhardtii","pumilio 23","protein_coding"
"Cre16.g661588","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre16.g673700","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre16.g680944","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre16.g682650","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre16.g683793","No alias","Chlamydomonas reinhardtii","pescadillo-related","protein_coding"
"Cre16.g685900","No alias","Chlamydomonas reinhardtii","protein arginine methyltransferase 3","protein_coding"
"Cre16.g689311","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre16.g690500","No alias","Chlamydomonas reinhardtii","Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein","protein_coding"
"Cre17.g716400","No alias","Chlamydomonas reinhardtii","Zinc finger protein 622","protein_coding"
"Cre17.g718650","No alias","Chlamydomonas reinhardtii","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"Cre17.g724200","No alias","Chlamydomonas reinhardtii","RNA recognition motif (RRM)-containing protein","protein_coding"
"Cre17.g727700","No alias","Chlamydomonas reinhardtii","DEAD box RNA helicase (RH3)","protein_coding"
"Cre17.g734628","No alias","Chlamydomonas reinhardtii","zinc finger (C2H2 type) family protein","protein_coding"
"Cre17.g738200","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"evm.model.contig_2016.4","No alias","Porphyridium purpureum","(at4g38370 : 89.4) Phosphoglycerate mutase family protein; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 178.8) &  (original description: no original description)","protein_coding"
"evm.model.contig_2020.38","No alias","Porphyridium purpureum","(q01292|ilv5_spiol : 639.0) Ketol-acid reductoisomerase, chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) - Spinacia oleracea (Spinach) & (at3g58610 : 630.0) ketol-acid reductoisomerase; CONTAINS InterPro DOMAIN/s: Acetohydroxy acid isomeroreductase, catalytic (InterPro:IPR013116), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), Acetohydroxy acid isomeroreductase C-terminal (InterPro:IPR000506), Ketol-acid reductoisomerase (InterPro:IPR016206), Acetohydroxy acid isomeroreductase (InterPro:IPR013023), NAD(P)-binding domain (InterPro:IPR016040). & (reliability: 1260.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2025.44","No alias","Porphyridium purpureum","(at2g44860 : 152.0) Ribosomal protein L24e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L24e (InterPro:IPR000988), TRASH (InterPro:IPR011017); BEST Arabidopsis thaliana protein match is: Ribosomal protein L24e family protein (TAIR:AT3G53020.1); Has 1527 Blast hits to 1527 proteins in 399 species: Archae - 307; Bacteria - 5; Metazoa - 446; Fungi - 310; Plants - 198; Viruses - 0; Other Eukaryotes - 261 (source: NCBI BLink). & (reliability: 304.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2025.47","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2025.61","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2031.8","No alias","Porphyridium purpureum","(at4g28200 : 84.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). & (reliability: 168.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2032.2","No alias","Porphyridium purpureum","(at2g45490 : 123.0) Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division.  Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems.  In interphase cells, the protein is predominantly nuclear.  During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. The protein is concentrated in nuclear dots arranged around the nucleolus and the nuclear periphery in early prophase cells.; ataurora3 (AUR3); CONTAINS InterPro DOMAIN/s: Spindle assembly checkpoint kinase (InterPro:IPR020663), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ataurora1 (TAIR:AT4G32830.1); Has 132422 Blast hits to 130217 proteins in 4585 species: Archae - 167; Bacteria - 15261; Metazoa - 49222; Fungi - 13102; Plants - 32389; Viruses - 552; Other Eukaryotes - 21729 (source: NCBI BLink). & (q43531|ccamk_lillo : 93.6) Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase (EC 2.7.11.17) (LlCCaMK) - Lilium longiflorum (Trumpet lily) & (reliability: 246.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2048.2","No alias","Porphyridium purpureum","(at5g17270 : 185.0) Protein prenylyltransferase superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Protein prenylyltransferase superfamily protein (TAIR:AT5G37130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 370.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2051.4","No alias","Porphyridium purpureum","(at4g34910 : 262.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 35246 Blast hits to 34671 proteins in 2939 species: Archae - 524; Bacteria - 16250; Metazoa - 5646; Fungi - 4238; Plants - 2336; Viruses - 4; Other Eukaryotes - 6248 (source: NCBI BLink). & (p41380|if4a3_nicpl : 84.0) Eukaryotic initiation factor 4A-3 (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A-3) (eIF-4A-3) - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (reliability: 524.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2053.2","No alias","Porphyridium purpureum","(at3g25400 : 84.0) CONTAINS InterPro DOMAIN/s: NTP Pyrophosphohydrolase MazG-related, RS21-C6 (InterPro:IPR011394), EAR (InterPro:IPR009039), NTP pyrophosphohydrolase MazG, putative catalytic core (InterPro:IPR004518); Has 1123 Blast hits to 1121 proteins in 452 species: Archae - 22; Bacteria - 753; Metazoa - 81; Fungi - 3; Plants - 83; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). & (reliability: 168.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2093.6","No alias","Porphyridium purpureum","(at5g58030 : 159.0) Transport protein particle (TRAPP) component; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194), TRAPP I complex, Trs31 (InterPro:IPR016696); Has 560 Blast hits to 545 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 199; Fungi - 199; Plants - 63; Viruses - 0; Other Eukaryotes - 99 (source: NCBI BLink). & (reliability: 318.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2104.16","No alias","Porphyridium purpureum","(at5g57990 : 199.0) Encodes a ubiquitin-specific protease.; ubiquitin-specific protease 23 (UBP23); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 19 (TAIR:AT2G24640.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 398.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2108.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2112.15","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2122.22","No alias","Porphyridium purpureum","(at5g06360 : 350.0) Ribosomal protein S8e family protein; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 700.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2128.1","No alias","Porphyridium purpureum","(at3g02020 : 370.0) encodes a monofunctional aspartate kinase; aspartate kinase 3 (AK3); CONTAINS InterPro DOMAIN/s: Aspartate kinase, conserved site (InterPro:IPR018042), Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Amino acid-binding ACT (InterPro:IPR002912), Aspartate kinase domain (InterPro:IPR001341); BEST Arabidopsis thaliana protein match is: Aspartate kinase family protein (TAIR:AT5G14060.2); Has 11044 Blast hits to 11020 proteins in 2545 species: Archae - 256; Bacteria - 7570; Metazoa - 4; Fungi - 149; Plants - 183; Viruses - 0; Other Eukaryotes - 2882 (source: NCBI BLink). & (p49080|akh2_maize : 154.0) Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplast precursor (AK-HD 2) (AK-HSDH 2) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] - Zea mays (Maize) & (reliability: 740.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2139.20","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2143.1","No alias","Porphyridium purpureum","(at3g11964 : 182.0) RNA binding;RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: mRNA processing, RNA processing; LOCATED IN: nucleolus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), RNA-processing protein, HAT helix (InterPro:IPR003107), Suppressor of forked (InterPro:IPR008847); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G51110.1); Has 43836 Blast hits to 19683 proteins in 2824 species: Archae - 141; Bacteria - 33398; Metazoa - 1103; Fungi - 905; Plants - 756; Viruses - 0; Other Eukaryotes - 7533 (source: NCBI BLink). & (reliability: 364.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2144.4","No alias","Porphyridium purpureum","(gnl|cdd|68872 : 97.4) no description available & (at4g02400 : 97.1) U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.2); Has 7468 Blast hits to 4514 proteins in 366 species: Archae - 14; Bacteria - 554; Metazoa - 2650; Fungi - 816; Plants - 392; Viruses - 146; Other Eukaryotes - 2896 (source: NCBI BLink). & (reliability: 194.2) &  (original description: no original description)","protein_coding"
"evm.model.contig_2146.8","No alias","Porphyridium purpureum","(at1g02410 : 192.0) cytochrome c oxidase assembly protein CtaG / Cox11 family; FUNCTIONS IN: copper ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase assembly protein CtaG/Cox11 (InterPro:IPR007533); Has 2749 Blast hits to 2749 proteins in 659 species: Archae - 0; Bacteria - 997; Metazoa - 98; Fungi - 130; Plants - 41; Viruses - 0; Other Eukaryotes - 1483 (source: NCBI BLink). & (reliability: 384.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2149.14","No alias","Porphyridium purpureum","(at4g26110 : 133.0) Encodes a member of a small gene family of proteins with similarity to nucleosome assembly proteins.May function in nucleotide excision repair. Loss of function mutations have no obvious visible phenotypes but do seem to affect transcription of NER related genes.; nucleosome assembly protein1;1 (NAP1;1); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA repair, nucleosome assembly; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: nucleosome assembly protein 1;3 (TAIR:AT5G56950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 266.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2157.17","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2157.18","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2157.21","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2181.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2244.1","No alias","Porphyridium purpureum","(at2g44740 : 83.6) cyclin p4;1 (CYCP4;1); CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG (InterPro:IPR012389), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN P4;2 (TAIR:AT5G61650.1); Has 1474 Blast hits to 1416 proteins in 218 species: Archae - 0; Bacteria - 18; Metazoa - 247; Fungi - 710; Plants - 236; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink). & (reliability: 167.2) &  (original description: no original description)","protein_coding"
"evm.model.contig_2270.1","No alias","Porphyridium purpureum","(at5g24850 : 303.0) Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome.; cryptochrome 3 (CRY3); FUNCTIONS IN: FMN binding, DNA binding, DNA photolyase activity; INVOLVED IN: DNA repair; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), Cryptochrome, DASH (InterPro:IPR014133), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: photolyase/blue-light receptor 2 (TAIR:AT2G47590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q651u1|cryd_orysa : 298.0) Cryptochrome DASH, chloroplast/mitochondrial precursor - Oryza sativa (Rice) & (reliability: 606.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2281.10","No alias","Porphyridium purpureum","(at2g42070 : 113.0) nudix hydrolase homolog 23 (NUDX23); CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase (InterPro:IPR020476), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); Has 7171 Blast hits to 7171 proteins in 1678 species: Archae - 149; Bacteria - 5807; Metazoa - 107; Fungi - 42; Plants - 74; Viruses - 1; Other Eukaryotes - 991 (source: NCBI BLink). & (reliability: 226.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2286.12","No alias","Porphyridium purpureum","(at2g26980 : 245.0) encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers.; CBL-interacting protein kinase 3 (CIPK3); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: Ca2+regulated serine-threonine protein kinase family protein (TAIR:AT5G21326.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 238.0) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 490.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2286.20","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2286.26","No alias","Porphyridium purpureum","(at5g67220 : 265.0) FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, oxidation reduction, tRNA processing, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269), tRNA-dihydrouridine synthase, conserved site (InterPro:IPR018517); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G49640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 530.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2295.5","No alias","Porphyridium purpureum","(at4g29720 : 156.0) polyamine oxidase 5 (PAO5); FUNCTIONS IN: primary amine oxidase activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937); BEST Arabidopsis thaliana protein match is: LSD1-like 3 (TAIR:AT4G16310.1); Has 3107 Blast hits to 2713 proteins in 458 species: Archae - 2; Bacteria - 686; Metazoa - 1027; Fungi - 508; Plants - 550; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink). & (reliability: 312.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2299.5","No alias","Porphyridium purpureum","(at3g07050 : 275.0) GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917), GNL3L/Grn1 putative GTPase (InterPro:IPR014813); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT1G52980.1); Has 11622 Blast hits to 10428 proteins in 1861 species: Archae - 158; Bacteria - 5948; Metazoa - 1715; Fungi - 910; Plants - 502; Viruses - 28; Other Eukaryotes - 2361 (source: NCBI BLink). & (reliability: 550.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2349.3","No alias","Porphyridium purpureum","(at2g34357 : 101.0) ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Domain of unknown function, NUC173 (InterPro:IPR012978); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G23540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 202.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2391.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2492.2","No alias","Porphyridium purpureum","(at1g06720 : 287.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42440.1); Has 8329 Blast hits to 5822 proteins in 470 species: Archae - 49; Bacteria - 737; Metazoa - 2493; Fungi - 1253; Plants - 549; Viruses - 77; Other Eukaryotes - 3171 (source: NCBI BLink). & (reliability: 574.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2671.1","No alias","Porphyridium purpureum","(at4g17486 : 142.0) PPPDE putative thiol peptidase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT5G47310.1); Has 871 Blast hits to 871 proteins in 175 species: Archae - 0; Bacteria - 0; Metazoa - 234; Fungi - 89; Plants - 366; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink). & (reliability: 284.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3385.6","No alias","Porphyridium purpureum","(at5g26742 : 365.0) embryo defective 1138 (emb1138); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), GUCT (InterPro:IPR012562), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, CCHC-type (InterPro:IPR001878), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: putative mitochondrial RNA helicase 2 (TAIR:AT3G22330.1). & (q41382|rh7_spiol : 331.0) DEAD-box ATP-dependent RNA helicase 7 (EC 3.6.1.-) - Spinacia oleracea (Spinach) & (gnl|cdd|68872 : 168.0) no description available & (gnl|cdd|39774 : 80.5) no description available & (reliability: 730.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3387.6","No alias","Porphyridium purpureum","(at2g01490 : 157.0) phytanoyl-CoA dioxygenase (PhyH) family protein; FUNCTIONS IN: phytanoyl-CoA dioxygenase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phytanoyl-CoA dioxygenase (InterPro:IPR008775); Has 2926 Blast hits to 2921 proteins in 334 species: Archae - 4; Bacteria - 485; Metazoa - 347; Fungi - 101; Plants - 64; Viruses - 0; Other Eukaryotes - 1925 (source: NCBI BLink). & (reliability: 314.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3401.11","No alias","Porphyridium purpureum","(at5g10480 : 129.0) Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA;1 only in its phosphorylated form, preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early  mitosis and inhibited Arabidopsis seedling growth. Localized in  the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10, a component of the microsomal fatty acid elongase complex, suggesting a role in synthesis of VLCFAs (very long chain fatty acids).; PASTICCINO 2 (PAS2); CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase-like, PTPLA (InterPro:IPR007482); BEST Arabidopsis thaliana protein match is: Protein-tyrosine phosphatase-like, PTPLA (TAIR:AT5G59770.1). & (reliability: 258.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3401.28","No alias","Porphyridium purpureum","(at5g17660 : 156.0) tRNA (guanine-N-7) methyltransferase; FUNCTIONS IN: tRNA (guanine-N7-)-methyltransferase activity; INVOLVED IN: tRNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA (guanine-N-7) methyltransferase (InterPro:IPR003358); BEST Arabidopsis thaliana protein match is: tRNA (guanine-N-7) methyltransferase (TAIR:AT5G24840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 312.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3409.8","No alias","Porphyridium purpureum","(at5g41970 : 335.0) Metal-dependent protein hydrolase; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Metal-dependent protein hydrolase (InterPro:IPR003226); BEST Arabidopsis thaliana protein match is: Metal-dependent protein hydrolase (TAIR:AT3G49320.1); Has 677 Blast hits to 672 proteins in 331 species: Archae - 0; Bacteria - 213; Metazoa - 146; Fungi - 144; Plants - 55; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink). & (reliability: 670.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3414.3","No alias","Porphyridium purpureum","(q6f2u9|syk_orysa : 605.0) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) - Oryza sativa (Rice) & (at3g11710 : 582.0) lysyl-tRNA synthetase 1 (ATKRS-1); FUNCTIONS IN: ATP binding, lysine-tRNA ligase activity; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Lysyl-tRNA synthetase, class II (InterPro:IPR002313), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 24040 Blast hits to 20328 proteins in 2969 species: Archae - 380; Bacteria - 16623; Metazoa - 629; Fungi - 774; Plants - 209; Viruses - 0; Other Eukaryotes - 5425 (source: NCBI BLink). & (reliability: 1164.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3431.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3434.2","No alias","Porphyridium purpureum","(at5g13680 : 122.0) A subunit of Elongator, a histone acetyl transferase complex, consisting of six subunits (ELP1ñELP6), that copurifies with the elongating RNAPII in yeast and humans. Three Arabidopsis thaliana genes, encoding homologs of the yeast Elongator subunits ELP1, ELP3 (histone acetyl transferase), and ELP4 are responsible for the narrow leaf phenotype in elongata mutants and for reduced root growth that results from a decreased cell division rate.; ABA-OVERLY SENSITIVE 1 (ABO1); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), IKI3 (InterPro:IPR006849); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (gnl|cdd|68872 : 113.0) no description available & (reliability: 244.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3435.17","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3450.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3450.5","No alias","Porphyridium purpureum","(q41382|rh7_spiol : 422.0) DEAD-box ATP-dependent RNA helicase 7 (EC 3.6.1.-) - Spinacia oleracea (Spinach) & (at5g62190 : 392.0) DEAD/DEAH box RNA helicase PRH75; PRH75; FUNCTIONS IN: DEAD/H-box RNA helicase binding, ATP-dependent helicase activity; INVOLVED IN: RNA metabolic process; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), GUCT (InterPro:IPR012562), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD box RNA helicase (RH3) (TAIR:AT5G26742.2); Has 57587 Blast hits to 49572 proteins in 3210 species: Archae - 795; Bacteria - 24538; Metazoa - 10953; Fungi - 6002; Plants - 4052; Viruses - 90; Other Eukaryotes - 11157 (source: NCBI BLink). & (reliability: 784.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3452.3","No alias","Porphyridium purpureum","(at1g55860 : 164.0) encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.; ubiquitin-protein ligase 1 (UPL1); CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), E3 ubiquitin ligase, domain of unknown function DUF913 (InterPro:IPR010314), Ubiquitin interacting motif (InterPro:IPR003903), E3 ubiquitin ligase, domain of unknown function DUF908 (InterPro:IPR010309), HECT (InterPro:IPR000569), Armadillo-type fold (InterPro:IPR016024), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 2 (TAIR:AT1G70320.1). & (reliability: 328.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3470.2","No alias","Porphyridium purpureum","(at2g45270 : 288.0) Mitochondrial protein essential for embryo development.; glycoprotease 1 (GCP1); FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis, embryo development; LOCATED IN: mitochondrial inner membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M22, O-sialoglycoprotein peptidase (InterPro:IPR022450), Peptidase M22, glycoprotease (InterPro:IPR000905), Peptidase M22, glycoprotease, subgroup (InterPro:IPR017861); BEST Arabidopsis thaliana protein match is: Actin-like ATPase superfamily protein (TAIR:AT4G22720.2); Has 11122 Blast hits to 11085 proteins in 2922 species: Archae - 268; Bacteria - 6121; Metazoa - 269; Fungi - 294; Plants - 213; Viruses - 0; Other Eukaryotes - 3957 (source: NCBI BLink). & (reliability: 576.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3487.3","No alias","Porphyridium purpureum","(at5g39040 : 332.0) Encodes a member of TAP subfamily of ABC transporters that is located in the vacuole.  Mutants are hypersensitive to aluminum and the gene product may be important for intracellular movement of some substrate, possibly chelated Al, as part of a mechanism of aluminum sequestration.; transporter associated with antigen processing protein 2 (TAP2); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: response to aluminum ion; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 11 (TAIR:AT1G02520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q6yuu5|mdr_orysa : 254.0) Putative multidrug resistance protein (P-glycoprotein) - Oryza sativa (Rice) & (reliability: 664.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3509.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3524.14","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3524.8","No alias","Porphyridium purpureum","(at2g47990 : 220.0) Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant.; SLOW WALKER1 (SWA1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), U3 small nucleolar RNA-associated protein 15, C-terminal (InterPro:IPR018983), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 33528 Blast hits to 20320 proteins in 654 species: Archae - 34; Bacteria - 4945; Metazoa - 12077; Fungi - 7782; Plants - 4404; Viruses - 6; Other Eukaryotes - 4280 (source: NCBI BLink). & (p93340|gblp_nicpl : 81.3) Guanine nucleotide-binding protein subunit beta-like protein - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (reliability: 440.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3542.9","No alias","Porphyridium purpureum","(at2g19540 : 247.0) Transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: Histone-binding protein RBBP4 (InterPro:IPR022052), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT2G16780.1); Has 21764 Blast hits to 15460 proteins in 558 species: Archae - 2; Bacteria - 1508; Metazoa - 8621; Fungi - 5109; Plants - 3695; Viruses - 0; Other Eukaryotes - 2829 (source: NCBI BLink). & (reliability: 494.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3587.2","No alias","Porphyridium purpureum","(at1g03360 : 123.0) ribosomal RNA processing 4 (RRP4); FUNCTIONS IN: exonuclease activity; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); Has 615 Blast hits to 615 proteins in 291 species: Archae - 147; Bacteria - 0; Metazoa - 136; Fungi - 134; Plants - 55; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). & (reliability: 246.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3699.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3811.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_430.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_436.14","No alias","Porphyridium purpureum","(at3g13580 : 95.5) Ribosomal protein L30/L7 family protein; FUNCTIONS IN: structural constituent of ribosome, transcription regulator activity; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L30, N-terminal (InterPro:IPR012988), Ribosomal protein L7, eukaryotic (InterPro:IPR005998), Ribosomal protein L30p/L7e, conserved region (InterPro:IPR000517), Ribosomal protein L30, conserved site (InterPro:IPR018038), Ribosomal protein L30, ferredoxin-like fold domain (InterPro:IPR016082); BEST Arabidopsis thaliana protein match is: Ribosomal protein L30/L7 family protein (TAIR:AT2G01250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 191.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4398.2","No alias","Porphyridium purpureum","(at2g18290 : 89.7) anaphase promoting complex 10 (APC10); INVOLVED IN: regulation of DNA endoreduplication, phloem or xylem histogenesis; LOCATED IN: anaphase-promoting complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Anaphase-promoting complex, subunit 10 (InterPro:IPR004939), Anaphase-promoting complex, subunit 10, subgroup (InterPro:IPR016901), Galactose-binding domain-like (InterPro:IPR008979); Has 552 Blast hits to 552 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 288; Fungi - 144; Plants - 49; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink). & (reliability: 179.4) &  (original description: no original description)","protein_coding"
"evm.model.contig_4398.6","No alias","Porphyridium purpureum","(at1g21870 : 162.0) Encodes a Golgi-localized nucleotide-sugar transporter.; golgi nucleotide sugar transporter 5 (GONST5); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: EamA-like transporter family protein (TAIR:AT1G77610.1); Has 3294 Blast hits to 3291 proteins in 314 species: Archae - 0; Bacteria - 80; Metazoa - 703; Fungi - 565; Plants - 1531; Viruses - 0; Other Eukaryotes - 415 (source: NCBI BLink). & (reliability: 324.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_440.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4401.6","No alias","Porphyridium purpureum","(at1g18260 : 92.8) HCP-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G73570.1); Has 24350 Blast hits to 8436 proteins in 1359 species: Archae - 0; Bacteria - 17163; Metazoa - 848; Fungi - 960; Plants - 547; Viruses - 27; Other Eukaryotes - 4805 (source: NCBI BLink). & (reliability: 174.8) &  (original description: no original description)","protein_coding"
"evm.model.contig_4403.9","No alias","Porphyridium purpureum","(at2g45300 : 472.0) encodes 3-phosphoshikimate 1-carboxyvinyltransferase / 5-enolpyruvylshikimate-3-phosphate / EPSP synthase involved in chorismate biosynthesis; RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta; FUNCTIONS IN: 3-phosphoshikimate 1-carboxyvinyltransferase activity; INVOLVED IN: glyphosate metabolic process, chorismate biosynthetic process, aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: 3-phosphoshikimate 1-carboxyvinyltransferase, core (InterPro:IPR001986), 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup (InterPro:IPR006264), RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (InterPro:IPR013792); BEST Arabidopsis thaliana protein match is: RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (TAIR:AT1G48860.1); Has 13824 Blast hits to 13779 proteins in 2767 species: Archae - 215; Bacteria - 9594; Metazoa - 6; Fungi - 149; Plants - 206; Viruses - 0; Other Eukaryotes - 3654 (source: NCBI BLink). & (p17688|aroa_brana : 471.0) 3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor (EC 2.5.1.19) (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) - Brassica napus (Rape) & (reliability: 944.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4407.13","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding"
"evm.model.contig_4407.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4408.23","No alias","Porphyridium purpureum","(at2g40360 : 214.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: rRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), BOP1, N-terminal (InterPro:IPR012953), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: HEAT repeat ;WD domain, G-beta repeat protein protein (TAIR:AT5G01770.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 428.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_441.18","No alias","Porphyridium purpureum","(at1g01860 : 93.2) dimethyladenosine transferase; PALEFACE 1 (PFC1); FUNCTIONS IN: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity; INVOLVED IN: response to cold; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2); Has 9632 Blast hits to 9628 proteins in 3006 species: Archae - 228; Bacteria - 6144; Metazoa - 264; Fungi - 142; Plants - 116; Viruses - 0; Other Eukaryotes - 2738 (source: NCBI BLink). & (reliability: 186.4) &  (original description: no original description)","protein_coding"
"evm.model.contig_4416.10","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4422.9","No alias","Porphyridium purpureum","(at4g26900 : 513.0) encodes a glutamine amidotransferase and cyclase, catalyzes the fifth and sixth steps of the histidine biosynthetic pathway; HIS HF (AT-HF); FUNCTIONS IN: imidazoleglycerol-phosphate synthase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Imidazole glycerol phosphate synthase, subunit H (InterPro:IPR010139), Aldolase-type TIM barrel (InterPro:IPR013785), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Ribulose-phosphate binding barrel (InterPro:IPR011060), Histidine biosynthesis, HisF (InterPro:IPR004651), Glutamine amidotransferase type 1 (InterPro:IPR017926), Histidine biosynthesis (InterPro:IPR006062), Imidazole glycerol phosphate synthase HisHF (InterPro:IPR014640); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1026.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4443.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4443.17","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4445.1","No alias","Porphyridium purpureum","(at4g05410 : 237.0) Encodes a nucleolar protein with seven   WD40-repeats that plays a role in embryo sac development and is critical for the correct positioning of the division plane of zygote and the apical cell lineage in Arabidopsis.  YAO may act by modulating nucleolar function, such as rRNA biogenesis, during early embryogenesis and gametogenesis.; YAOZHE (YAO); FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: acceptance of pollen, mitochondrial fission, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleolus, anaphase-promoting complex, small nucleolar ribonucleoprotein complex, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G21130.1); Has 47131 Blast hits to 24802 proteins in 761 species: Archae - 50; Bacteria - 6358; Metazoa - 18156; Fungi - 10195; Plants - 5539; Viruses - 94; Other Eukaryotes - 6739 (source: NCBI BLink). & (q39336|gblp_brana : 95.1) Guanine nucleotide-binding protein subunit beta-like protein - Brassica napus (Rape) & (reliability: 472.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4446.12","No alias","Porphyridium purpureum","(at3g21540 : 426.0) transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: nucleolus, heterotrimeric G-protein complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Small-subunit processome, Utp12 (InterPro:IPR007148), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT5G16750.1); Has 119158 Blast hits to 33008 proteins in 859 species: Archae - 80; Bacteria - 11912; Metazoa - 49564; Fungi - 26721; Plants - 15098; Viruses - 0; Other Eukaryotes - 15783 (source: NCBI BLink). & (reliability: 852.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4446.20","No alias","Porphyridium purpureum","(at3g11450 : 217.0) DnaJ domain ;Myb-like DNA-binding domain; FUNCTIONS IN: heat shock protein binding, DNA binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), MYB-like (InterPro:IPR017877), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778); BEST Arabidopsis thaliana protein match is: DnaJ domain ;Myb-like DNA-binding domain (TAIR:AT5G06110.2); Has 60375 Blast hits to 43868 proteins in 3410 species: Archae - 228; Bacteria - 14410; Metazoa - 19184; Fungi - 5541; Plants - 3499; Viruses - 192; Other Eukaryotes - 17321 (source: NCBI BLink). & (reliability: 434.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_445.10","No alias","Porphyridium purpureum","(at2g37410 : 160.0) Mitochondrial inner membrane translocase. Together with AtTIM17-1, TIM17-2 has a long C-terminal extension not present in other TIMs. The extension is located in the outer membrane and so TIM17-2 links the inner and outer mitochondrial membranes. The C-terminal region is essential for protein import into mitochondria via the general import pathway but is not necessary for import via the carrier pathway.; translocase inner membrane subunit 17-2 (TIM17-2); FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport, protein import into mitochondrial inner membrane; LOCATED IN: mitochondrial outer membrane, mitochondrion, mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: translocase inner membrane subunit 17-1 (TAIR:AT1G20350.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 320.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4458.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4464.8","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4481.6","No alias","Porphyridium purpureum","(gnl|cdd|68872 : 134.0) no description available & (at1g26110 : 99.0) Encodes Decapping 5, required for mRNA decapping, P-body formation and translational repression during postembryonic development.; decapping 5 (DCP5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: negative regulation of translation, deadenylation-independent decapping of nuclear-transcribed mRNA, cytoplasmic mRNA processing body assembly; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DFDF motif (InterPro:IPR019050), FFD/TFG box motif (InterPro:IPR019053); BEST Arabidopsis thaliana protein match is: decapping 5-like (TAIR:AT5G45330.1); Has 14874 Blast hits to 10327 proteins in 603 species: Archae - 12; Bacteria - 902; Metazoa - 6418; Fungi - 2978; Plants - 1226; Viruses - 261; Other Eukaryotes - 3077 (source: NCBI BLink). & (gnl|cdd|39774 : 86.3) no description available & (reliability: 198.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4482.1","No alias","Porphyridium purpureum","(at1g61850 : 145.0) Encodes a non-specific lipase that hydrolyzes phospholipids as well as galactolipids, at both sn-1 and sn-2 positions. Involved in basal jasmonic acid biosynthesis by releasing the precursor fatty acid from membrane lipids. Mutant plants were impacted in resistance to fungus B. cinerea.; phospholipases;galactolipases; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 2 (TAIR:AT3G26500.1). & (reliability: 290.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4502.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4515.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_452.5","No alias","Porphyridium purpureum","(at4g29510 : 389.0) Has arginine N-methyltransferase activity. Modifies AtMBD7.; arginine methyltransferase 11 (PRMT11); FUNCTIONS IN: protein-arginine N-methyltransferase activity; INVOLVED IN: protein amino acid methylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal L11 methyltransferase, PrmA (InterPro:IPR010456); BEST Arabidopsis thaliana protein match is: protein arginine methyltransferase 1A (TAIR:AT2G19670.1); Has 2778 Blast hits to 2730 proteins in 659 species: Archae - 61; Bacteria - 655; Metazoa - 1180; Fungi - 241; Plants - 326; Viruses - 1; Other Eukaryotes - 314 (source: NCBI BLink). & (reliability: 778.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_452.6","No alias","Porphyridium purpureum","(at4g32272 : 98.2) Nucleotide/sugar transporter family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: UDP-N-acetylglucosamine (UAA) transporter family (TAIR:AT4G31600.1). & (reliability: 196.4) &  (original description: no original description)","protein_coding"
"evm.model.contig_4537.1","No alias","Porphyridium purpureum","(at4g33760 : 481.0) tRNA synthetase class II (D, K and N) family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast, membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type (InterPro:IPR004524), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type, C-terminal (InterPro:IPR018153), GAD domain (InterPro:IPR004115); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 31429 Blast hits to 23398 proteins in 2969 species: Archae - 812; Bacteria - 21040; Metazoa - 874; Fungi - 1027; Plants - 329; Viruses - 0; Other Eukaryotes - 7347 (source: NCBI BLink). & (reliability: 962.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_457.10","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_458.10","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_458.12","No alias","Porphyridium purpureum",""(at4g37400 : 95.1) member of CYP81F; ""cytochrome P450, family 81, subfamily F, polypeptide 3"" (CYP81F3); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: stem, leaf whorl, root, leaf, stamen; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 81, subfamily F, polypeptide 4 (TAIR:AT4G37410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q43068|c82a1_pea : 95.1) Cytochrome P450 82A1 (EC 1.14.-.-) (CYPLXXXII) (Fragment) - Pisum sativum (Garden pea) & (reliability: 178.0) &  (original description: no original description)"","protein_coding"
"evm.model.contig_458.13","No alias","Porphyridium purpureum","(at4g05090 : 99.8) Inositol monophosphatase family protein; FUNCTIONS IN: 3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: sulfur metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase (InterPro:IPR000760), Inositol monophosphatase, metal-binding site (InterPro:IPR020583); BEST Arabidopsis thaliana protein match is: Inositol monophosphatase family protein (TAIR:AT5G64000.1); Has 5084 Blast hits to 5082 proteins in 1369 species: Archae - 38; Bacteria - 2832; Metazoa - 92; Fungi - 221; Plants - 243; Viruses - 0; Other Eukaryotes - 1658 (source: NCBI BLink). & (q40639|dpnp_orysa : 84.7) 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) (3'(2'),5-bisphosphonucleoside 3'(2')-phosphohydrolase) (DPNPase) - Oryza sativa (Rice) & (reliability: 199.6) &  (original description: no original description)","protein_coding"
"evm.model.contig_4584.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4590.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_470.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_472.6","No alias","Porphyridium purpureum","(at4g28450 : 343.0) This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase; nucleotide binding;protein binding; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Sof1-like protein (InterPro:IPR007287), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 37337 Blast hits to 21127 proteins in 676 species: Archae - 38; Bacteria - 5948; Metazoa - 14528; Fungi - 7710; Plants - 4379; Viruses - 0; Other Eukaryotes - 4734 (source: NCBI BLink). & (reliability: 686.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_489.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_493.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_498.13","No alias","Porphyridium purpureum","(at2g45790 : 308.0) encodes a phosphomannomutase, involved in ascorbate biosynthesis; phosphomannomutase (PMM); FUNCTIONS IN: protein binding, phosphomannomutase activity; INVOLVED IN: L-ascorbic acid biosynthetic process, response to salt stress, mannose biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic phosphomannomutase (InterPro:IPR005002), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379); Has 1083 Blast hits to 1081 proteins in 282 species: Archae - 1; Bacteria - 92; Metazoa - 201; Fungi - 171; Plants - 223; Viruses - 0; Other Eukaryotes - 395 (source: NCBI BLink). & (reliability: 616.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_511.3","No alias","Porphyridium purpureum","(at2g24120 : 493.0) SCABRA 3 (SCA3); FUNCTIONS IN: DNA-directed RNA polymerase activity, protein binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, bacteriophage type (InterPro:IPR002092); BEST Arabidopsis thaliana protein match is: male gametophyte defective 3 (TAIR:AT1G68990.1); Has 1200 Blast hits to 1186 proteins in 332 species: Archae - 0; Bacteria - 40; Metazoa - 130; Fungi - 220; Plants - 200; Viruses - 136; Other Eukaryotes - 474 (source: NCBI BLink). & (p69242|rpot3_nicsy : 471.0) DNA-directed RNA polymerase 3, chloroplast precursor (EC 2.7.7.6) (T7 bacteriophage-type single subunit RNA polymerase 3) (NsRpoT-C) - Nicotiana sylvestris (Wood tobacco) & (reliability: 986.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_516.2","No alias","Porphyridium purpureum","(gnl|cdd|68872 : 113.0) no description available & (at3g16810 : 97.8) Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.; pumilio 24 (PUM24); FUNCTIONS IN: RNA binding, binding; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 5 (TAIR:AT3G20250.1); Has 2337 Blast hits to 1306 proteins in 237 species: Archae - 0; Bacteria - 1; Metazoa - 1209; Fungi - 478; Plants - 404; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink). & (reliability: 195.6) &  (original description: no original description)","protein_coding"
"evm.model.contig_522.26","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_524.6","No alias","Porphyridium purpureum","(at5g22750 : 317.0) DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer; RAD5; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: embryo, sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT5G43530.1); Has 27107 Blast hits to 18179 proteins in 1771 species: Archae - 108; Bacteria - 7266; Metazoa - 8140; Fungi - 5089; Plants - 2446; Viruses - 173; Other Eukaryotes - 3885 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 119.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 634.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_544.5","No alias","Porphyridium purpureum","(at1g70590 : 87.8) F-box family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G18260.1); Has 16059 Blast hits to 6577 proteins in 1289 species: Archae - 0; Bacteria - 11525; Metazoa - 502; Fungi - 723; Plants - 391; Viruses - 15; Other Eukaryotes - 2903 (source: NCBI BLink). & (reliability: 175.6) &  (original description: no original description)","protein_coding"
"evm.model.contig_544.6","No alias","Porphyridium purpureum","(at1g18260 : 88.2) HCP-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G73570.1); Has 24350 Blast hits to 8436 proteins in 1359 species: Archae - 0; Bacteria - 17163; Metazoa - 848; Fungi - 960; Plants - 547; Viruses - 27; Other Eukaryotes - 4805 (source: NCBI BLink). & (reliability: 172.6) &  (original description: no original description)","protein_coding"
"evm.model.contig_589.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_592.2","No alias","Porphyridium purpureum","(at1g32550 : 132.0) Encodes FdC1, a ferredoxin protein capable of alternative electron partitioning.  FdC1 level increases in conditions of acceptor limitation at PSI.; 2Fe-2S ferredoxin-like superfamily protein; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: ferredoxin 1 (TAIR:AT1G10960.1); Has 2669 Blast hits to 2667 proteins in 530 species: Archae - 94; Bacteria - 1212; Metazoa - 6; Fungi - 1; Plants - 619; Viruses - 5; Other Eukaryotes - 732 (source: NCBI BLink). & (reliability: 264.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_592.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_600.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_601.5","No alias","Porphyridium purpureum","(at4g16630 : 453.0) DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 91788 Blast hits to 67613 proteins in 3461 species: Archae - 858; Bacteria - 34733; Metazoa - 21444; Fungi - 9002; Plants - 4280; Viruses - 615; Other Eukaryotes - 20856 (source: NCBI BLink). & (p46942|db10_nicsy : 166.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 906.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_625.3","No alias","Porphyridium purpureum","(at4g26430 : 101.0) one of two genes encoding subunit 6 of COP9 signalosome complex; COP9 signalosome subunit 6B (CSN6B); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9 signalosome subunit 6A (TAIR:AT5G56280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 202.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_664.1","No alias","Porphyridium purpureum","(at3g14390 : 114.0) Pyridoxal-dependent decarboxylase family protein; FUNCTIONS IN: diaminopimelate decarboxylase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: chloroplast; EXPRESSED IN: guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Alanine racemase/group IV decarboxylase, C-terminal (InterPro:IPR009006), Ornithine/DAP/Arg decarboxylase (InterPro:IPR000183), Orn/DAP/Arg decarboxylase 2, N-terminal (InterPro:IPR022644), Orn/DAP/Arg decarboxylase 2, C-terminal (InterPro:IPR022643), Diaminopimelate decarboxylase (InterPro:IPR002986), Orn/DAP/Arg decarboxylase 2, conserved site (InterPro:IPR022657), Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site (InterPro:IPR022653); BEST Arabidopsis thaliana protein match is: Pyridoxal-dependent decarboxylase family protein (TAIR:AT5G11880.1); Has 13020 Blast hits to 12980 proteins in 2586 species: Archae - 150; Bacteria - 7800; Metazoa - 435; Fungi - 194; Plants - 400; Viruses - 27; Other Eukaryotes - 4014 (source: NCBI BLink). & (reliability: 228.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_666.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_667.5","No alias","Porphyridium purpureum","(at4g34740 : 503.0) Encodes glutamine 5-phosphoribosylpyrophosphate amidotransferase. Mutants are deficient in leaf, but not cotyledon, plastid and palisade cell development. Mutants exhibit defective chloroplast development under non-low light, suggesting that the defect in chloroplast development is caused by photo-oxidative damage.; GLN phosphoribosyl pyrophosphate amidotransferase 2 (ASE2); FUNCTIONS IN: amidophosphoribosyltransferase activity; INVOLVED IN: purine base biosynthetic process, purine nucleotide biosynthetic process, leaf morphogenesis; LOCATED IN: plastid stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Phosphoribosyltransferase (InterPro:IPR000836), Amidophosphoribosyl transferase (InterPro:IPR005854), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: GLN phosphoribosyl pyrophosphate amidotransferase 1 (TAIR:AT2G16570.1); Has 21535 Blast hits to 21523 proteins in 2920 species: Archae - 630; Bacteria - 12403; Metazoa - 419; Fungi - 318; Plants - 251; Viruses - 17; Other Eukaryotes - 7497 (source: NCBI BLink). & (p52418|pur1_soybn : 486.0) Amidophosphoribosyltransferase, chloroplast precursor (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPAT) - Glycine max (Soybean) & (reliability: 1006.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_674.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_731.3","No alias","Porphyridium purpureum","(at2g24765 : 137.0) GTPase required for Golgi targeting of GRIP domain  proteins. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner; ADP-ribosylation factor 3 (ARF3); FUNCTIONS IN: protein binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: Golgi stack, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: ADP-ribosylation factor A1B (TAIR:AT5G14670.1); Has 9110 Blast hits to 9109 proteins in 393 species: Archae - 2; Bacteria - 4; Metazoa - 4531; Fungi - 1457; Plants - 1456; Viruses - 3; Other Eukaryotes - 1657 (source: NCBI BLink). & (p51824|arf1_soltu : 137.0) ADP-ribosylation factor 1 - Solanum tuberosum (Potato) & (reliability: 264.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000025.51","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000076.128","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000076.129","No alias","Cyanophora paradoxa","(at5g22320 : 113.0) Leucine-rich repeat (LRR) family protein; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 4 (TAIR:AT4G35470.1). & (reliability: 226.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000093.13","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000093.47","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000113.111","No alias","Cyanophora paradoxa","(at1g33390 : 274.0) Over-expression of this gene results in stem fasciation.  The predicted amino acid sequence reveals the presence of two   domains (DEXH-box or DEAD-box helicase and DUF1065 domain) and fragments of two more domains (HrpA domain and HA2 domain).; FASCIATED STEM 4 (FAS4); FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative (TAIR:AT3G26560.1); Has 16056 Blast hits to 9082 proteins in 1556 species: Archae - 2; Bacteria - 6415; Metazoa - 3625; Fungi - 2171; Plants - 1181; Viruses - 334; Other Eukaryotes - 2328 (source: NCBI BLink). & (reliability: 548.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000114.21","No alias","Cyanophora paradoxa","(at4g26600 : 466.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity, RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: nucleolus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), Nop2p (InterPro:IPR011023); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G55920.1); Has 64231 Blast hits to 30815 proteins in 2915 species: Archae - 495; Bacteria - 29426; Metazoa - 12322; Fungi - 6487; Plants - 2396; Viruses - 589; Other Eukaryotes - 12516 (source: NCBI BLink). & (reliability: 932.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000123.23","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000137.5","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000144.192","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000144.74","No alias","Cyanophora paradoxa","(at5g52820 : 184.0) WD-40 repeat family protein / notchless protein, putative; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), NLE (InterPro:IPR012972), WD40 repeat (InterPro:IPR001680), G-protein, beta subunit (InterPro:IPR001632), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 368.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000194.42","No alias","Cyanophora paradoxa","(at1g52980 : 522.0) GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917), NGP1, N-terminal (InterPro:IPR012971); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT3G07050.1); Has 37841 Blast hits to 9407 proteins in 1963 species: Archae - 139; Bacteria - 33291; Metazoa - 1149; Fungi - 897; Plants - 387; Viruses - 125; Other Eukaryotes - 1853 (source: NCBI BLink). & (reliability: 1044.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000215.114","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000215.62","No alias","Cyanophora paradoxa","(at2g37990 : 164.0) ribosome biogenesis regulatory protein (RRS1) family protein; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal biogenesis regulatory protein (InterPro:IPR007023); Has 425 Blast hits to 423 proteins in 207 species: Archae - 1; Bacteria - 2; Metazoa - 151; Fungi - 137; Plants - 58; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). & (reliability: 328.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000217.16","No alias","Cyanophora paradoxa","(at4g25730 : 263.0) FtsJ-like methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation, rRNA processing, rRNA methylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spb1, C-terminal (InterPro:IPR012920), Ribosomal RNA methyltransferase J (InterPro:IPR015507), Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G01230.1); Has 30028 Blast hits to 21157 proteins in 1975 species: Archae - 200; Bacteria - 7297; Metazoa - 8731; Fungi - 3085; Plants - 939; Viruses - 236; Other Eukaryotes - 9540 (source: NCBI BLink). & (reliability: 526.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000310.30","No alias","Cyanophora paradoxa","(at3g03920 : 95.1) H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein; FUNCTIONS IN: snoRNA binding, pseudouridine synthase activity, RNA binding; LOCATED IN: chloroplast thylakoid membrane, nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Gar1, eukaryote (InterPro:IPR021154), H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 (InterPro:IPR007504); BEST Arabidopsis thaliana protein match is: H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein (TAIR:AT5G18180.1); Has 27180 Blast hits to 8695 proteins in 812 species: Archae - 17; Bacteria - 4971; Metazoa - 11125; Fungi - 2086; Plants - 5744; Viruses - 428; Other Eukaryotes - 2809 (source: NCBI BLink). & (reliability: 190.2) &  (original description: no original description)","protein_coding"
"evm.model.tig00000381.6","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000382.38","No alias","Cyanophora paradoxa","(at2g40360 : 570.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: rRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), BOP1, N-terminal (InterPro:IPR012953), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: HEAT repeat ;WD domain, G-beta repeat protein protein (TAIR:AT5G01770.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1140.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000383.21","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000383.51","No alias","Cyanophora paradoxa","(at5g60790 : 627.0) member of GCN subfamily; GENERAL CONTROL NON-REPRESSIBLE 1 (GCN1); FUNCTIONS IN: transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: general control non-repressible 3 (TAIR:AT1G64550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1254.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000388.46","No alias","Cyanophora paradoxa","(at3g56990 : 320.0) embryo sac development arrest 7 (EDA7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), NUC153 (InterPro:IPR012580), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 640.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000396.7","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000403.66","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000403.82","No alias","Cyanophora paradoxa","(at1g67120 : 493.0) ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of protein complex assembly; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Midasin (InterPro:IPR012099), ATPase, AAA-5 (InterPro:IPR011704), ATPase, AAA+ type, core (InterPro:IPR003593), von Willebrand factor, type A (InterPro:IPR002035), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 986.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000405.29","No alias","Cyanophora paradoxa","(at4g01560 : 280.0) maternal effect embryo arrest 49 (MEE49); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); BEST Arabidopsis thaliana protein match is: Ribosomal RNA processing Brix domain protein (TAIR:AT1G63780.1); Has 893 Blast hits to 882 proteins in 227 species: Archae - 2; Bacteria - 0; Metazoa - 265; Fungi - 337; Plants - 121; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink). & (reliability: 560.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000405.63","No alias","Cyanophora paradoxa","(at2g38290 : 108.0) encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.; ammonium transporter 2 (AMT2); FUNCTIONS IN: ammonium transmembrane transporter activity, high affinity secondary active ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, response to nematode, cellular response to nitrogen starvation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Blood group Rhesus C/E/D polypeptide (InterPro:IPR002229), Ammonium transporter, conserved site (InterPro:IPR018047); BEST Arabidopsis thaliana protein match is: ammonium transporter 1;2 (TAIR:AT1G64780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 216.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000441.11","No alias","Cyanophora paradoxa","(at3g18600 : 300.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G65900.1); Has 44310 Blast hits to 43105 proteins in 3082 species: Archae - 753; Bacteria - 22440; Metazoa - 6214; Fungi - 4682; Plants - 2500; Viruses - 12; Other Eukaryotes - 7709 (source: NCBI BLink). & (p41381|if4a8_tobac : 87.4) Eukaryotic initiation factor 4A-8 (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A-8) (eIF-4A-8) - Nicotiana tabacum (Common tobacco) & (reliability: 600.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000441.12","No alias","Cyanophora paradoxa","(at5g65900 : 171.0) DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G18600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 328.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000455.12","No alias","Cyanophora paradoxa","(at1g05000 : 139.0) Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic (InterPro:IPR020428), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT2G32960.1); Has 580 Blast hits to 572 proteins in 119 species: Archae - 0; Bacteria - 14; Metazoa - 1; Fungi - 314; Plants - 145; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink). & (reliability: 278.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000480.71","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000498.91","No alias","Cyanophora paradoxa","(at4g31790 : 241.0) Tetrapyrrole (Corrin/Porphyrin) Methylases; FUNCTIONS IN: methyltransferase activity, diphthine synthase activity; INVOLVED IN: peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diphthine synthase (InterPro:IPR004551), Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 482.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000545.20","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000545.36","No alias","Cyanophora paradoxa","(at1g13160 : 272.0) ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function, nucleolar NUC130/133, N-terminal (InterPro:IPR012977), Armadillo-type fold (InterPro:IPR016024), SDA1 (InterPro:IPR007949); BEST Arabidopsis thaliana protein match is: SDA1 family protein (TAIR:AT4G31520.1); Has 29206 Blast hits to 13573 proteins in 931 species: Archae - 207; Bacteria - 10267; Metazoa - 6952; Fungi - 3668; Plants - 1163; Viruses - 549; Other Eukaryotes - 6400 (source: NCBI BLink). & (reliability: 544.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000553.10","No alias","Cyanophora paradoxa","(at3g57150 : 635.0) Encodes a putative pseudouridine synthase (NAP57).; homologue of NAP57 (NAP57); FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification, RNA processing; LOCATED IN: cytosol, nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), H/ACA ribonucleoprotein complex, subunit Cbf5 (InterPro:IPR004802), Pseudouridine synthase II, TruB, N-terminal (InterPro:IPR002501), Dyskerin-like (InterPro:IPR012960), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT5G14460.1); Has 114172 Blast hits to 55339 proteins in 3754 species: Archae - 551; Bacteria - 17094; Metazoa - 41477; Fungi - 11530; Plants - 5704; Viruses - 752; Other Eukaryotes - 37064 (source: NCBI BLink). & (reliability: 1270.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000553.33","No alias","Cyanophora paradoxa","(at3g51800 : 295.0) putative nuclear DNA-binding protein G2p (AtG2) mRNA,; ATG2; FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Proliferation-associated protein 1 (InterPro:IPR004545), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: methionine aminopeptidase 2A (TAIR:AT2G44180.1). & (reliability: 590.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000571.29","No alias","Cyanophora paradoxa","(at4g28200 : 144.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). & (reliability: 288.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000571.5","No alias","Cyanophora paradoxa","(at1g69070 : 115.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPro:IPR007276); Has 69842 Blast hits to 35213 proteins in 1572 species: Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink). & (reliability: 230.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000600.11","No alias","Cyanophora paradoxa","(at5g20160 : 121.0) Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: RNA binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote (InterPro:IPR002415), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT4G22380.1); Has 572 Blast hits to 572 proteins in 228 species: Archae - 12; Bacteria - 0; Metazoa - 202; Fungi - 143; Plants - 95; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink). & (reliability: 242.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000605.10","No alias","Cyanophora paradoxa","(at3g11964 : 197.0) RNA binding;RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: mRNA processing, RNA processing; LOCATED IN: nucleolus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), RNA-processing protein, HAT helix (InterPro:IPR003107), Suppressor of forked (InterPro:IPR008847); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G51110.1); Has 43836 Blast hits to 19683 proteins in 2824 species: Archae - 141; Bacteria - 33398; Metazoa - 1103; Fungi - 905; Plants - 756; Viruses - 0; Other Eukaryotes - 7533 (source: NCBI BLink). & (reliability: 394.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000615.12","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000615.26","No alias","Cyanophora paradoxa","(at4g35740 : 207.0) Encodes RECQ3, an ATP-dependent helicase.; RecQl3; FUNCTIONS IN: ATP binding, ATP-dependent helicase activity; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RECQ helicase L2 (TAIR:AT1G31360.1); Has 28158 Blast hits to 28089 proteins in 2765 species: Archae - 286; Bacteria - 16813; Metazoa - 3341; Fungi - 2669; Plants - 1491; Viruses - 10; Other Eukaryotes - 3548 (source: NCBI BLink). & (reliability: 414.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000615.61","No alias","Cyanophora paradoxa","(at3g16810 : 157.0) Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.; pumilio 24 (PUM24); FUNCTIONS IN: RNA binding, binding; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 5 (TAIR:AT3G20250.1); Has 2337 Blast hits to 1306 proteins in 237 species: Archae - 0; Bacteria - 1; Metazoa - 1209; Fungi - 478; Plants - 404; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink). & (reliability: 314.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000615.67","No alias","Cyanophora paradoxa","(at4g28450 : 462.0) This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase; nucleotide binding;protein binding; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Sof1-like protein (InterPro:IPR007287), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 37337 Blast hits to 21127 proteins in 676 species: Archae - 38; Bacteria - 5948; Metazoa - 14528; Fungi - 7710; Plants - 4379; Viruses - 0; Other Eukaryotes - 4734 (source: NCBI BLink). & (reliability: 924.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000632.10","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000640.23","No alias","Cyanophora paradoxa","(at2g04845 : 174.0) Acyl-CoA N-acyltransferases (NAT) superfamily protein; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 393 Blast hits to 383 proteins in 188 species: Archae - 0; Bacteria - 98; Metazoa - 122; Fungi - 80; Plants - 36; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). & (reliability: 348.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000655.55","No alias","Cyanophora paradoxa","(at1g03360 : 192.0) ribosomal RNA processing 4 (RRP4); FUNCTIONS IN: exonuclease activity; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); Has 615 Blast hits to 615 proteins in 291 species: Archae - 147; Bacteria - 0; Metazoa - 136; Fungi - 134; Plants - 55; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). & (reliability: 384.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000704.61","No alias","Cyanophora paradoxa","(at5g16750 : 313.0) Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development.; TORMOZEMBRYO DEFECTIVE (TOZ); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Small-subunit processome, Utp13 (InterPro:IPR013934), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 153281 Blast hits to 38108 proteins in 953 species: Archae - 96; Bacteria - 13855; Metazoa - 64321; Fungi - 32637; Plants - 21715; Viruses - 0; Other Eukaryotes - 20657 (source: NCBI BLink). & (q39836|gblp_soybn : 97.8) Guanine nucleotide-binding protein subunit beta-like protein - Glycine max (Soybean) & (reliability: 626.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000704.67","No alias","Cyanophora paradoxa","(at3g51470 : 132.0) Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C,  manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT2G33700.1); Has 7043 Blast hits to 7008 proteins in 640 species: Archae - 12; Bacteria - 714; Metazoa - 1616; Fungi - 683; Plants - 2691; Viruses - 9; Other Eukaryotes - 1318 (source: NCBI BLink). & (reliability: 264.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000711.42","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000718.4","No alias","Cyanophora paradoxa","(at1g73110 : 198.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATPase activity, ATP binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: rubisco activase (TAIR:AT2G39730.1); Has 469 Blast hits to 469 proteins in 170 species: Archae - 27; Bacteria - 71; Metazoa - 17; Fungi - 60; Plants - 256; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). & (o64981|rca_phavu : 187.0) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) - Phaseolus vulgaris (Kidney bean) (French bean) & (reliability: 396.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000769.2","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000789.38","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000789.39","No alias","Cyanophora paradoxa","(at1g17690 : 182.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Digestive organ expansion factor, predicted (InterPro:IPR010678); Has 25006 Blast hits to 13379 proteins in 904 species: Archae - 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants - 1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI BLink). & (reliability: 364.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000792.35","No alias","Cyanophora paradoxa","(at4g16630 : 441.0) DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 91788 Blast hits to 67613 proteins in 3461 species: Archae - 858; Bacteria - 34733; Metazoa - 21444; Fungi - 9002; Plants - 4280; Viruses - 615; Other Eukaryotes - 20856 (source: NCBI BLink). & (p46942|db10_nicsy : 172.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 882.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000792.36","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000829.16","No alias","Cyanophora paradoxa","(at1g31660 : 299.0) CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955); Has 475 Blast hits to 467 proteins in 210 species: Archae - 0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). & (reliability: 598.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000852.2","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000852.39","No alias","Cyanophora paradoxa","(at4g07410 : 188.0) Transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G27470.1); Has 10654 Blast hits to 6476 proteins in 452 species: Archae - 14; Bacteria - 3757; Metazoa - 2166; Fungi - 2748; Plants - 788; Viruses - 0; Other Eukaryotes - 1181 (source: NCBI BLink). & (reliability: 376.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000880.12","No alias","Cyanophora paradoxa","(at3g22660 : 117.0) rRNA processing protein-related; CONTAINS InterPro DOMAIN/s: Eukaryotic rRNA processing (InterPro:IPR008610); Has 1021 Blast hits to 939 proteins in 244 species: Archae - 0; Bacteria - 62; Metazoa - 355; Fungi - 209; Plants - 58; Viruses - 0; Other Eukaryotes - 337 (source: NCBI BLink). & (reliability: 234.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000880.2","No alias","Cyanophora paradoxa","(at3g27180 : 220.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: rRNA methylation; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00095 (InterPro:IPR004398); Has 4717 Blast hits to 4707 proteins in 1568 species: Archae - 39; Bacteria - 4296; Metazoa - 92; Fungi - 26; Plants - 68; Viruses - 1; Other Eukaryotes - 195 (source: NCBI BLink). & (reliability: 440.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000893.5","No alias","Cyanophora paradoxa","(at4g19610 : 150.0) nucleotide binding;nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G08695.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 300.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000944.38","No alias","Cyanophora paradoxa","(at5g06360 : 396.0) Ribosomal protein S8e family protein; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 792.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000989.39","No alias","Cyanophora paradoxa","(at5g22100 : 298.0) RNA cyclase family protein; FUNCTIONS IN: RNA-3'-phosphate cyclase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA 3'-terminal phosphate cyclase-like, conserved site (InterPro:IPR020719), RNA 3'-terminal phosphate cyclase-like (InterPro:IPR000228), RNA 3'-terminal phosphate cyclase, insert domain (InterPro:IPR013796), RNA 3'-terminal phosphate cyclase-like, eukaryotic (InterPro:IPR016443), RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (InterPro:IPR013792); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 596.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001029.15","No alias","Cyanophora paradoxa","(at5g40870 : 237.0) Encodes a protein that appears to possess both  uridine kinase and uracil phosphoribosyltransferase activities.; uridine kinase/uracil phosphoribosyltransferase 1 (UK/UPRT1); FUNCTIONS IN: uridine kinase activity, uracil phosphoribosyltransferase activity, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, nucleoside metabolic process, metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Phosphoribosyltransferase (InterPro:IPR000836), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: uridine kinase-like 2 (TAIR:AT3G27190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p19824|kppr_chlre : 84.7) Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19) (Phosphopentokinase) (PRKase) (PRK) - Chlamydomonas reinhardtii & (reliability: 474.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001049.16","No alias","Cyanophora paradoxa","(at5g52470 : 336.0) encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.1f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.; fibrillarin 1 (FIB1); FUNCTIONS IN: snoRNA binding; INVOLVED IN: RNA methylation, rRNA processing; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fibrillarin (InterPro:IPR000692); BEST Arabidopsis thaliana protein match is: fibrillarin 2 (TAIR:AT4G25630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 672.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001049.3","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001049.30","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001073.13","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001073.2","No alias","Cyanophora paradoxa","(at2g46230 : 236.0) PIN domain-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF652 (InterPro:IPR006984), Nucleotide binding protein, PINc (InterPro:IPR006596); BEST Arabidopsis thaliana protein match is: PIN domain-like family protein (TAIR:AT1G26530.1); Has 609 Blast hits to 609 proteins in 228 species: Archae - 22; Bacteria - 0; Metazoa - 231; Fungi - 162; Plants - 97; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). & (reliability: 472.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001073.20","No alias","Cyanophora paradoxa","(at1g56110 : 570.0) NOP56-like protein; homolog of nucleolar protein NOP56 (NOP56); LOCATED IN: nucleolus, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain (InterPro:IPR002687), NOP5, N-terminal (InterPro:IPR012974), NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: NOP56-like pre RNA processing ribonucleoprotein (TAIR:AT3G12860.1); Has 24182 Blast hits to 12540 proteins in 912 species: Archae - 265; Bacteria - 1523; Metazoa - 8592; Fungi - 2628; Plants - 1300; Viruses - 179; Other Eukaryotes - 9695 (source: NCBI BLink). & (reliability: 1140.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001086.8","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001093.3","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001130.7","No alias","Cyanophora paradoxa","(at4g26310 : 143.0) elongation factor P (EF-P) family protein; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Translation elongation factor P/YeiP, central (InterPro:IPR001059), Translation elongation factor, KOW-like (InterPro:IPR013185), Translation protein SH3-like, subgroup (InterPro:IPR014722); BEST Arabidopsis thaliana protein match is: elongation factor P (EF-P) family protein (TAIR:AT3G08740.1). & (reliability: 286.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001181.31","No alias","Cyanophora paradoxa","(at2g37690 : 279.0) phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative; FUNCTIONS IN: phosphoribosylaminoimidazole carboxylase activity, catalytic activity, ATP binding; INVOLVED IN: 'de novo' IMP biosynthetic process, pollen development; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Phosphoribosylaminoimidazole carboxylase (InterPro:IPR016301), PreATP-grasp-like fold (InterPro:IPR016185), ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type (InterPro:IPR003135), Phosphoribosylaminoimidazole carboxylase, ATPase subunit (InterPro:IPR005875), 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase (InterPro:IPR000031), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Pre-ATP-grasp fold (InterPro:IPR013817), Rudiment single hybrid motif (InterPro:IPR011054); BEST Arabidopsis thaliana protein match is: phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein (TAIR:AT2G05140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 558.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001187.14","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001206.16","No alias","Cyanophora paradoxa","(at1g52930 : 204.0) Ribosomal RNA processing Brix domain protein; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); BEST Arabidopsis thaliana protein match is: Ribosomal RNA processing Brix domain protein (TAIR:AT3G15460.1); Has 418 Blast hits to 416 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 137; Plants - 66; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink). & (reliability: 408.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001215.14","No alias","Cyanophora paradoxa","(at3g07050 : 206.0) GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917), GNL3L/Grn1 putative GTPase (InterPro:IPR014813); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT1G52980.1); Has 11622 Blast hits to 10428 proteins in 1861 species: Archae - 158; Bacteria - 5948; Metazoa - 1715; Fungi - 910; Plants - 502; Viruses - 28; Other Eukaryotes - 2361 (source: NCBI BLink). & (reliability: 412.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001221.5","No alias","Cyanophora paradoxa","(at1g22940 : 124.0) Encodes a bifunctional enzyme required for thiamine (vitamin B1) biosynthesis. TH1 can phosphorylate HMP-P to produce HMP-PP, the pyrimidine heterocyclic subunit of thiamine. TH1 also catalyzes the condensation of HMP-PP and HET to form thiamine monophosphate (TMP). TH1 also appears capable of phosphorylating HMP based on E.coli mutant complementation assays. th1 mutants are thiamine auxotrophs that die as seedlings on unsupplemented media.; THIAMINE REQUIRING 1 (TH1); FUNCTIONS IN: phosphomethylpyrimidine kinase activity, thiamin-phosphate diphosphorylase activity, hydroxymethylpyrimidine kinase activity; INVOLVED IN: thiamin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine monophosphate synthase (InterPro:IPR003733), Phosphomethylpyrimidine kinase type-2 (InterPro:IPR004399), Aldolase-type TIM barrel (InterPro:IPR013785), Phosphomethylpyrimidine kinase type-1 (InterPro:IPR013749); Has 15989 Blast hits to 15891 proteins in 2548 species: Archae - 338; Bacteria - 12149; Metazoa - 165; Fungi - 331; Plants - 107; Viruses - 0; Other Eukaryotes - 2899 (source: NCBI BLink). & (reliability: 248.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001278.11","No alias","Cyanophora paradoxa","(at1g03110 : 103.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, alpha subunit (TAIR:AT2G21390.1); Has 13545 Blast hits to 7977 proteins in 481 species: Archae - 46; Bacteria - 4157; Metazoa - 4042; Fungi - 2887; Plants - 1145; Viruses - 0; Other Eukaryotes - 1268 (source: NCBI BLink). & (reliability: 206.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001304.4","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001310.11","No alias","Cyanophora paradoxa","(at3g15080 : 165.0) Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1777 Blast hits to 1777 proteins in 250 species: Archae - 0; Bacteria - 24; Metazoa - 732; Fungi - 619; Plants - 217; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink). & (reliability: 330.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001366.4","No alias","Cyanophora paradoxa","(at3g10530 : 195.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), BING4, C-terminal (InterPro:IPR012952), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: MOS4-associated  complex 3B (TAIR:AT2G33340.2); Has 9286 Blast hits to 5748 proteins in 422 species: Archae - 16; Bacteria - 3151; Metazoa - 2206; Fungi - 2085; Plants - 594; Viruses - 0; Other Eukaryotes - 1234 (source: NCBI BLink). & (reliability: 390.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001371.15","No alias","Cyanophora paradoxa","(at5g41790 : 106.0) encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light.; COP1-interactive protein 1 (CIP1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of protein import into nucleus; LOCATED IN: cytoskeleton, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G64330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q9m7j4|mfp1_tobac : 82.4) MAR-binding filament-like protein 1-1 - Nicotiana tabacum (Common tobacco) & (reliability: 212.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001428.2","No alias","Cyanophora paradoxa","(at3g01160 : 117.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUC153 (InterPro:IPR012580); Has 36638 Blast hits to 21323 proteins in 1057 species: Archae - 109; Bacteria - 2369; Metazoa - 13796; Fungi - 4858; Plants - 1657; Viruses - 489; Other Eukaryotes - 13360 (source: NCBI BLink). & (reliability: 234.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001437.7","No alias","Cyanophora paradoxa","(at1g74260 : 1295.0) Encodes formylglycinamidine ribonucleotide synthase an enzyme involved in de novo purine biosynthesis. PUR4 is localizes to the chloroplast and mitochondria. Loss of PUR4 function affects male but not female gametophyte development.; purine biosynthesis 4 (PUR4); FUNCTIONS IN: phosphoribosylformylglycinamidine synthase activity, catalytic activity, ATP binding; INVOLVED IN: microgametogenesis, pollen development; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PurM, N-terminal-like (InterPro:IPR016188), Phosphoribosylformylglycinamidine synthase, eukaryote/proteobacteria (InterPro:IPR010073), AIR synthase related protein (InterPro:IPR000728), AIR synthase related protein, C-terminal (InterPro:IPR010918), Glutamine amidotransferase type 1 (InterPro:IPR017926); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 2590.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001545.8","No alias","Cyanophora paradoxa","(at4g07950 : 90.9) DNA-directed RNA polymerase, subunit M, archaeal; FUNCTIONS IN: in 6 functions; INVOLVED IN: RNA elongation, regulation of transcription, DNA-dependent, transcription, regulation of transcription; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), DNA-directed RNA polymerase, M/15kDa subunit (InterPro:IPR001529), DNA-directed RNA polymerase, subunit M, archaeal (InterPro:IPR006288), DNA-directed RNA polymerase M, 15kDa subunit, conserved site (InterPro:IPR019761); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase, subunit M, archaeal (TAIR:AT1G01210.1); Has 1132 Blast hits to 1132 proteins in 328 species: Archae - 242; Bacteria - 0; Metazoa - 282; Fungi - 291; Plants - 114; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink). & (reliability: 181.8) &  (original description: no original description)","protein_coding"
"evm.model.tig00020510.74","No alias","Cyanophora paradoxa","(at5g15750 : 216.0) Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; FUNCTIONS IN: RNA binding, rRNA binding; LOCATED IN: cytosolic small ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4 (InterPro:IPR001912), RNA-binding S4 (InterPro:IPR002942); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 432.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020531.45","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020554.131","No alias","Cyanophora paradoxa","(at3g26480 : 124.0) Transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G18900.1); Has 5777 Blast hits to 4098 proteins in 362 species: Archae - 26; Bacteria - 1996; Metazoa - 1153; Fungi - 1443; Plants - 515; Viruses - 0; Other Eukaryotes - 644 (source: NCBI BLink). & (reliability: 248.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020554.145","No alias","Cyanophora paradoxa","(at5g14050 : 296.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1); Has 6115 Blast hits to 4690 proteins in 400 species: Archae - 26; Bacteria - 2036; Metazoa - 1593; Fungi - 1149; Plants - 369; Viruses - 2; Other Eukaryotes - 940 (source: NCBI BLink). & (reliability: 592.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020554.21","No alias","Cyanophora paradoxa","(at4g02400 : 114.0) U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.2); Has 7468 Blast hits to 4514 proteins in 366 species: Archae - 14; Bacteria - 554; Metazoa - 2650; Fungi - 816; Plants - 392; Viruses - 146; Other Eukaryotes - 2896 (source: NCBI BLink). & (reliability: 228.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020554.23","No alias","Cyanophora paradoxa","(at1g61700 : 129.0) Protein of unknown function that is homologous to the At1g11475 locus that encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V. Homologous to budding yeast RPB10.; RNA polymerases N / 8 kDa subunit; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding; INVOLVED IN: transcription, DNA-dependent, transcription, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA polymerases, N/8kDa subunit (InterPro:IPR000268), RNA polymerases, subunit N, zinc binding site (InterPro:IPR020789), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: RNA polymerases N / 8 kDa subunit (TAIR:AT1G11475.1); Has 943 Blast hits to 943 proteins in 326 species: Archae - 263; Bacteria - 0; Metazoa - 146; Fungi - 184; Plants - 71; Viruses - 3; Other Eukaryotes - 276 (source: NCBI BLink). & (q39290|rpb10_brana : 125.0) DNA-directed RNA polymerase II 8.2 kDa polypeptide (EC 2.7.7.6) (RPB10) (RP10) (ABC10) - Brassica napus (Rape) & (reliability: 258.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020554.25","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020554.42","No alias","Cyanophora paradoxa","(at2g34357 : 327.0) ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Domain of unknown function, NUC173 (InterPro:IPR012978); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G23540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 654.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020562.25","No alias","Cyanophora paradoxa","(at4g40000 : 302.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT2G22400.1); Has 8835 Blast hits to 8804 proteins in 2376 species: Archae - 282; Bacteria - 6104; Metazoa - 590; Fungi - 311; Plants - 234; Viruses - 0; Other Eukaryotes - 1314 (source: NCBI BLink). & (reliability: 604.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020603.8","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020604.12","No alias","Cyanophora paradoxa","(at5g66540 : 162.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 324.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020604.24","No alias","Cyanophora paradoxa","(at5g54910 : 437.0) DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G65900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p46942|db10_nicsy : 149.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 874.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020610.72","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020610.89","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020629.98","No alias","Cyanophora paradoxa","(at1g64550 : 532.0) member of GCN subfamily; general control non-repressible 3 (GCN3); FUNCTIONS IN: transporter activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT5G60790.1); Has 474431 Blast hits to 318649 proteins in 3825 species: Archae - 8686; Bacteria - 390426; Metazoa - 7720; Fungi - 5127; Plants - 4044; Viruses - 51; Other Eukaryotes - 58377 (source: NCBI BLink). & (reliability: 1064.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020675.101","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020684.38","No alias","Cyanophora paradoxa","(at5g05450 : 444.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G71370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q40468|if415_tobac : 166.0) Eukaryotic initiation factor 4A-15 (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A-15) (eIF-4A-15) - Nicotiana tabacum (Common tobacco) & (reliability: 856.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020684.42","No alias","Cyanophora paradoxa","(at4g15770 : 193.0) RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: ribosome assembly, ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Ribosome biogenesis factor NIP7-like (InterPro:IPR005155), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Ribosome biogenesis factor, NIP7 (InterPro:IPR016686); Has 438 Blast hits to 438 proteins in 213 species: Archae - 5; Bacteria - 0; Metazoa - 151; Fungi - 132; Plants - 49; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink). & (reliability: 386.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020684.7","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020685.34","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020693.9","No alias","Cyanophora paradoxa","(at1g79150 : 86.7) binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding factor (InterPro:IPR005612), Armadillo-type fold (InterPro:IPR016024), Nucleolar complex-associated (InterPro:IPR011501); Has 3184 Blast hits to 2630 proteins in 361 species: Archae - 21; Bacteria - 280; Metazoa - 1055; Fungi - 428; Plants - 179; Viruses - 26; Other Eukaryotes - 1195 (source: NCBI BLink). & (reliability: 173.4) &  (original description: no original description)","protein_coding"
"evm.model.tig00020710.40","No alias","Cyanophora paradoxa","(at1g29320 : 100.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 10050 Blast hits to 5411 proteins in 439 species: Archae - 25; Bacteria - 1235; Metazoa - 2837; Fungi - 1519; Plants - 647; Viruses - 46; Other Eukaryotes - 3741 (source: NCBI BLink). & (reliability: 200.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020723.108","No alias","Cyanophora paradoxa","(at1g59760 : 938.0) RNA helicase, ATP-dependent, SK12/DOB1 protein; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DSH, C-terminal (InterPro:IPR012961), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), RNA helicase, ATP-dependent, SK12/DOB1 (InterPro:IPR016438), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase, ATP-dependent, SK12/DOB1 protein (TAIR:AT2G06990.1); Has 9909 Blast hits to 8438 proteins in 1290 species: Archae - 828; Bacteria - 3072; Metazoa - 1170; Fungi - 1231; Plants - 476; Viruses - 32; Other Eukaryotes - 3100 (source: NCBI BLink). & (reliability: 1876.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020848.19","No alias","Cyanophora paradoxa","(at1g60620 : 348.0) RNA polymerase I subunit 43 (RPAC43); FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, 30-40kDa subunit, conserved site (InterPro:IPR001514), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein (TAIR:AT1G60850.1); Has 1342 Blast hits to 1342 proteins in 354 species: Archae - 247; Bacteria - 1; Metazoa - 281; Fungi - 345; Plants - 107; Viruses - 0; Other Eukaryotes - 361 (source: NCBI BLink). & (reliability: 696.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020848.30","No alias","Cyanophora paradoxa","(at5g42390 : 150.0) Insulinase (Peptidase family M16) family protein; FUNCTIONS IN: metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: Insulinase (Peptidase family M16) protein (TAIR:AT5G56730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 300.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020878.23","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020903.46","No alias","Cyanophora paradoxa","(q8s1z1|utp11_orysa : 174.0) Probable U3 small nucleolar RNA-associated protein 11 (U3 snoRNA-associated protein 11) - Oryza sativa (Rice) & (at3g60360 : 163.0) EMBRYO SAC DEVELOPMENT ARREST 14 (EDA14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: small-subunit processome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp11 (InterPro:IPR007144); Has 434 Blast hits to 428 proteins in 209 species: Archae - 4; Bacteria - 1; Metazoa - 127; Fungi - 141; Plants - 59; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink). & (reliability: 326.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020912.51","No alias","Cyanophora paradoxa","(at5g61770 : 257.0) PETER PAN-like protein (PPAN); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 514.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020912.53","No alias","Cyanophora paradoxa","(at1g60080 : 152.0) 3'-5'-exoribonuclease family protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: ribonuclease PH45A (TAIR:AT3G12990.3); Has 1508 Blast hits to 1508 proteins in 331 species: Archae - 402; Bacteria - 40; Metazoa - 363; Fungi - 232; Plants - 181; Viruses - 0; Other Eukaryotes - 290 (source: NCBI BLink). & (reliability: 304.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020927.23","No alias","Cyanophora paradoxa","(at2g47990 : 191.0) Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant.; SLOW WALKER1 (SWA1); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), U3 small nucleolar RNA-associated protein 15, C-terminal (InterPro:IPR018983), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 33528 Blast hits to 20320 proteins in 654 species: Archae - 34; Bacteria - 4945; Metazoa - 12077; Fungi - 7782; Plants - 4404; Viruses - 6; Other Eukaryotes - 4280 (source: NCBI BLink). & (reliability: 382.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020927.46","No alias","Cyanophora paradoxa","(at5g50110 : 119.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: rRNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: rRNA small subunit methyltransferase G (InterPro:IPR003682); Has 6840 Blast hits to 6840 proteins in 2435 species: Archae - 0; Bacteria - 5096; Metazoa - 2; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 1704 (source: NCBI BLink). & (reliability: 238.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020927.8","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020943.30","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020943.85","No alias","Cyanophora paradoxa","(at3g16840 : 182.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 60083 Blast hits to 51461 proteins in 3186 species: Archae - 589; Bacteria - 20345; Metazoa - 13239; Fungi - 7387; Plants - 3446; Viruses - 273; Other Eukaryotes - 14804 (source: NCBI BLink). & (p46942|db10_nicsy : 93.2) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 364.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020943.93","No alias","Cyanophora paradoxa","(at5g20600 : 116.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: preribosome, small subunit precursor; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleolar, Nop52 (InterPro:IPR010301); Has 543 Blast hits to 530 proteins in 201 species: Archae - 0; Bacteria - 10; Metazoa - 211; Fungi - 164; Plants - 46; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). & (reliability: 232.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020961.62","No alias","Cyanophora paradoxa","(at5g14520 : 240.0) pescadillo-related; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: cell proliferation; LOCATED IN: nucleolus, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pescadillo, N-terminal (InterPro:IPR010613), BRCT (InterPro:IPR001357); Has 503 Blast hits to 494 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 168; Plants - 48; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). & (reliability: 480.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021073.35","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021108.10","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021108.9","No alias","Cyanophora paradoxa","(at5g64420 : 89.4) DNA polymerase V family; FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding; INVOLVED IN: DNA replication, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase V (InterPro:IPR007015); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 178.8) &  (original description: no original description)","protein_coding"
"evm.model.tig00021122.12","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021127.53","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021168.21","No alias","Cyanophora paradoxa","(at5g15810 : 276.0) N2,N2-dimethylguanosine tRNA methyltransferase; FUNCTIONS IN: RNA binding, tRNA (guanine-N2-)-methyltransferase activity; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: N2,N2-dimethylguanosine tRNA methyltransferase (InterPro:IPR002905); BEST Arabidopsis thaliana protein match is: N2,N2-dimethylguanosine tRNA methyltransferase (TAIR:AT3G02320.1); Has 1017 Blast hits to 963 proteins in 359 species: Archae - 255; Bacteria - 70; Metazoa - 198; Fungi - 150; Plants - 103; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink). & (reliability: 552.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021179.21","No alias","Cyanophora paradoxa","(at4g05410 : 272.0) Encodes a nucleolar protein with seven   WD40-repeats that plays a role in embryo sac development and is critical for the correct positioning of the division plane of zygote and the apical cell lineage in Arabidopsis.  YAO may act by modulating nucleolar function, such as rRNA biogenesis, during early embryogenesis and gametogenesis.; YAOZHE (YAO); FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: acceptance of pollen, mitochondrial fission, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleolus, anaphase-promoting complex, small nucleolar ribonucleoprotein complex, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G21130.1); Has 47131 Blast hits to 24802 proteins in 761 species: Archae - 50; Bacteria - 6358; Metazoa - 18156; Fungi - 10195; Plants - 5539; Viruses - 94; Other Eukaryotes - 6739 (source: NCBI BLink). & (p93340|gblp_nicpl : 90.9) Guanine nucleotide-binding protein subunit beta-like protein - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (reliability: 540.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021217.6","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021234.17","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021293.16","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021293.22","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021293.23","No alias","Cyanophora paradoxa","(at1g72440 : 137.0) Encodes SLOW WALKER2 (SWA2), a NOC1/Mak21 homologue.  Essential for coordinated cell cycle progression during female gametophyte development.; embryo sac development arrest 25 (EDA25); INVOLVED IN: polar nucleus fusion, embryo sac development; LOCATED IN: nucleolus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding factor (InterPro:IPR005612); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 274.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021319.3","No alias","Cyanophora paradoxa","(at1g29900 : 540.0) carbamoyl phosphate synthetase large chain (CARB) mRNA,; carbamoyl phosphate synthetase B (CARB); FUNCTIONS IN: catalytic activity, ATP binding; INVOLVED IN: cellular response to phosphate starvation, arginine biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), MGS-like (InterPro:IPR011607), PreATP-grasp-like fold (InterPro:IPR016185), Carbamoyl phosphate synthetase, large subunit, oligomerisation (InterPro:IPR005480), Carbamoyl phosphate synthase, large subunit, glutamine-dependent (InterPro:IPR006275), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Carbamoyl phosphate synthase, large subunit (InterPro:IPR005483), Pre-ATP-grasp fold (InterPro:IPR013817); BEST Arabidopsis thaliana protein match is: acetyl-CoA carboxylase 2 (TAIR:AT1G36180.1); Has 49576 Blast hits to 29968 proteins in 5011 species: Archae - 665; Bacteria - 22536; Metazoa - 6475; Fungi - 1021; Plants - 476; Viruses - 0; Other Eukaryotes - 18403 (source: NCBI BLink). & (reliability: 1080.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021319.4","No alias","Cyanophora paradoxa","(at3g20330 : 226.0) encodes aspartate carbamoyltransferase catalyzing the second step in the de novo pyrimidine ribonucleotide biosynthesis; PYRIMIDINE B (PYRB); FUNCTIONS IN: amino acid binding, protein binding, aspartate carbamoyltransferase activity, carboxyl- or carbamoyltransferase activity; INVOLVED IN: cellular response to phosphate starvation, pyrimidine ribonucleotide biosynthetic process, cellular amino acid metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding (InterPro:IPR006132), Aspartate/ornithine carbamoyltransferase (InterPro:IPR006130), Aspartate carbamoyltransferase, eukaryotic (InterPro:IPR002082), Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain (InterPro:IPR006131); BEST Arabidopsis thaliana protein match is: ornithine carbamoyltransferase (TAIR:AT1G75330.1); Has 16843 Blast hits to 16841 proteins in 2894 species: Archae - 534; Bacteria - 10902; Metazoa - 218; Fungi - 284; Plants - 116; Viruses - 6; Other Eukaryotes - 4783 (source: NCBI BLink). & (q43087|pyrb2_pea : 225.0) Aspartate carbamoyltransferase 2, chloroplast precursor (EC 2.1.3.2) (Aspartate transcarbamylase 2) (ATCase 2) - Pisum sativum (Garden pea) & (reliability: 452.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021326.39","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021348.37","No alias","Cyanophora paradoxa","(at1g29940 : 144.0) Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A).; nuclear RNA polymerase A2 (NRPA2); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase I, Rpa2 specific (InterPro:IPR009674), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2 (TAIR:AT5G45140.1); Has 19116 Blast hits to 18561 proteins in 6776 species: Archae - 498; Bacteria - 7658; Metazoa - 537; Fungi - 3600; Plants - 1857; Viruses - 241; Other Eukaryotes - 4725 (source: NCBI BLink). & (reliability: 288.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021348.38","No alias","Cyanophora paradoxa","(at1g29940 : 348.0) Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A).; nuclear RNA polymerase A2 (NRPA2); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase I, Rpa2 specific (InterPro:IPR009674), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2 (TAIR:AT5G45140.1); Has 19116 Blast hits to 18561 proteins in 6776 species: Archae - 498; Bacteria - 7658; Metazoa - 537; Fungi - 3600; Plants - 1857; Viruses - 241; Other Eukaryotes - 4725 (source: NCBI BLink). & (reliability: 696.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021348.51","No alias","Cyanophora paradoxa","(at4g04940 : 484.0) transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: rRNA processing; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Small-subunit processome, Utp21 (InterPro:IPR007319), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G61210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 968.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021348.91","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021348.95","No alias","Cyanophora paradoxa","(at2g47420 : 310.0) Ribosomal RNA adenine dimethylase family protein; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA (adenine) methyltransferase activity; INVOLVED IN: rRNA modification, rRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine dimethylase (InterPro:IPR011530), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2); Has 9871 Blast hits to 9860 proteins in 3038 species: Archae - 214; Bacteria - 6519; Metazoa - 271; Fungi - 146; Plants - 120; Viruses - 0; Other Eukaryotes - 2601 (source: NCBI BLink). & (reliability: 620.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021350.31","No alias","Cyanophora paradoxa","(at3g05060 : 530.0) SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein; NOP56-like pre RNA processing ribonucleoprotein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain (InterPro:IPR002687), NOP5, N-terminal (InterPro:IPR012974), NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: NOP56-like pre RNA processing ribonucleoprotein (TAIR:AT5G27120.1); Has 39712 Blast hits to 18529 proteins in 1244 species: Archae - 275; Bacteria - 3520; Metazoa - 14574; Fungi - 4183; Plants - 1688; Viruses - 262; Other Eukaryotes - 15210 (source: NCBI BLink). & (reliability: 1048.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021428.5","No alias","Cyanophora paradoxa","(at5g15550 : 166.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), NLE (InterPro:IPR012972), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (TAIR:AT2G41500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 332.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021432.35","No alias","Cyanophora paradoxa","(at1g50920 : 605.0) Nucleolar GTP-binding protein; FUNCTIONS IN: GTP binding, nucleotide binding; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), Nucleolar GTP-binding 1 (InterPro:IPR010674), NOG, C-terminal (InterPro:IPR012973); BEST Arabidopsis thaliana protein match is: Nucleolar GTP-binding protein (TAIR:AT1G10300.1); Has 9379 Blast hits to 9179 proteins in 2035 species: Archae - 370; Bacteria - 5195; Metazoa - 1143; Fungi - 469; Plants - 325; Viruses - 0; Other Eukaryotes - 1877 (source: NCBI BLink). & (reliability: 1210.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021432.8","No alias","Cyanophora paradoxa","(at3g10640 : 113.0) VPS60.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G04850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 226.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021525.7","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021537.15","No alias","Cyanophora paradoxa","(q9xg98|kprs1_spiol : 341.0) Ribose-phosphate pyrophosphokinase 1 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 1) - Spinacia oleracea (Spinach) & (at2g35390 : 334.0) Phosphoribosyltransferase family protein; FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.10 ten leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: phosphoribosyl pyrophosphate (PRPP) synthase 2 (TAIR:AT1G32380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 668.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021589.16","No alias","Cyanophora paradoxa","(at3g04810 : 99.4) Encodes AtNek2, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.; NIMA-related kinase 2 (NEK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NIMA-related kinase 3 (TAIR:AT5G28290.1); Has 124376 Blast hits to 122221 proteins in 4182 species: Archae - 113; Bacteria - 14280; Metazoa - 45892; Fungi - 12262; Plants - 30619; Viruses - 487; Other Eukaryotes - 20723 (source: NCBI BLink). & (reliability: 198.8) &  (original description: no original description)","protein_coding"
"evm.model.tig00021612.49","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021612.52","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021721.13","No alias","Cyanophora paradoxa","(at2g42650 : 154.0) Ribosomal protein L1p/L10e family; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT3G58660.1); Has 1164 Blast hits to 1162 proteins in 304 species: Archae - 34; Bacteria - 0; Metazoa - 441; Fungi - 309; Plants - 224; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink). & (reliability: 308.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021721.26","No alias","Cyanophora paradoxa","(at3g21540 : 312.0) transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: nucleolus, heterotrimeric G-protein complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Small-subunit processome, Utp12 (InterPro:IPR007148), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT5G16750.1); Has 119158 Blast hits to 33008 proteins in 859 species: Archae - 80; Bacteria - 11912; Metazoa - 49564; Fungi - 26721; Plants - 15098; Viruses - 0; Other Eukaryotes - 15783 (source: NCBI BLink). & (p93107|pf20_chlre : 89.0) Flagellar WD repeat protein PF20 - Chlamydomonas reinhardtii & (reliability: 624.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00022075.19","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00022075.25","No alias","Cyanophora paradoxa","(at3g62310 : 1059.0) RNA helicase family protein; FUNCTIONS IN: RNA helicase activity, helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT2G47250.1); Has 10517 Blast hits to 9531 proteins in 1639 species: Archae - 4; Bacteria - 3473; Metazoa - 2472; Fungi - 1291; Plants - 883; Viruses - 640; Other Eukaryotes - 1754 (source: NCBI BLink). & (reliability: 2118.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00022075.32","No alias","Cyanophora paradoxa","(at1g77030 : 499.0) hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DBP10CT (InterPro:IPR012541), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 42888 Blast hits to 42073 proteins in 3063 species: Archae - 831; Bacteria - 21864; Metazoa - 5973; Fungi - 4375; Plants - 2654; Viruses - 31; Other Eukaryotes - 7160 (source: NCBI BLink). & (q41741|if4a_maize : 174.0) Eukaryotic initiation factor 4A (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A) (eIF-4A) - Zea mays (Maize) & (reliability: 998.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00022075.45","No alias","Cyanophora paradoxa","(at2g43650 : 99.0) EMBRYO DEFECTIVE 2777 (EMB2777); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: gene silencing; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146), Something about silencing protein 10 (Sas10), C-terminal (InterPro:IPR018972); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28230.2); Has 14657 Blast hits to 10395 proteins in 729 species: Archae - 127; Bacteria - 2247; Metazoa - 4743; Fungi - 2020; Plants - 661; Viruses - 159; Other Eukaryotes - 4700 (source: NCBI BLink). & (reliability: 191.0) &  (original description: no original description)","protein_coding"
"Glyma.01G005200","No alias","Glycine max","gamma-glutamyl transpeptidase 4","protein_coding"
"Glyma.01G008200","No alias","Glycine max","ABC transporter family protein","protein_coding"
"Glyma.01G062100","No alias","Glycine max","fructokinase-like 2","protein_coding"
"Glyma.01G155000","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.01G191900","No alias","Glycine max","acyl-CoA-binding domain 3","protein_coding"
"Glyma.01G205600","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.01G228000","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.01G236300","No alias","Glycine max","Tesmin/TSO1-like CXC domain-containing protein","protein_coding"
"Glyma.01G241600","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.02G000600","No alias","Glycine max","PENTATRICOPEPTIDE REPEAT 596","protein_coding"
"Glyma.02G006900","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.02G065100","No alias","Glycine max","exocyst subunit exo70 family protein C2","protein_coding"
"Glyma.02G116700","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.02G152000","No alias","Glycine max","RNA-binding protein-defense related 1","protein_coding"
"Glyma.02G205001","No alias","Glycine max","zinc ion binding;nucleic acid binding","protein_coding"
"Glyma.02G290200","No alias","Glycine max","ARM repeat superfamily protein","protein_coding"
"Glyma.02G300300","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.02G303400","No alias","Glycine max","cytochrome c oxidase 15","protein_coding"
"Glyma.03G032000","No alias","Glycine max","calmodulin-related","protein_coding"
"Glyma.03G068700","No alias","Glycine max","Metal-dependent protein hydrolase","protein_coding"
"Glyma.03G107800","No alias","Glycine max","cyclin p4;1","protein_coding"
"Glyma.03G120100","No alias","Glycine max","alpha-L-arabinofuranosidase 1","protein_coding"
"Glyma.03G150600","No alias","Glycine max","GTP binding Elongation factor Tu family protein","protein_coding"
"Glyma.03G172500","No alias","Glycine max","Histone superfamily protein","protein_coding"
"Glyma.03G178100","No alias","Glycine max","ROP interactive partner 3","protein_coding"
"Glyma.03G184300","No alias","Glycine max","Pentatricopeptide repeat (PPR-like) superfamily protein","protein_coding"
"Glyma.03G250500","No alias","Glycine max","zinc ion binding;DNA binding","protein_coding"
"Glyma.04G056500","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.04G056600","No alias","Glycine max","G protein alpha subunit 1","protein_coding"
"Glyma.04G081900","No alias","Glycine max","ARM repeat superfamily protein","protein_coding"
"Glyma.04G141000","No alias","Glycine max","AUTOPHAGY 6","protein_coding"
"Glyma.04G234700","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.04G235800","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.04G256800","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.05G000800","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.05G020900","No alias","Glycine max","glycine-rich RNA-binding protein 3","protein_coding"
"Glyma.05G051000","No alias","Glycine max","Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain","protein_coding"
"Glyma.05G087100","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.05G090100","No alias","Glycine max","Cobalamin-independent synthase family protein","protein_coding"
"Glyma.05G094900","No alias","Glycine max","basic helix-loop-helix (bHLH) DNA-binding superfamily protein","protein_coding"
"Glyma.05G105600","No alias","Glycine max","GRAS family transcription factor","protein_coding"
"Glyma.05G115200","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.05G119600","No alias","Glycine max","BRI1-associated receptor kinase","protein_coding"
"Glyma.05G123000","No alias","Glycine max","WRKY DNA-binding protein 9","protein_coding"
"Glyma.05G125500","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.05G134300","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.05G147700","No alias","Glycine max","glycosylphosphatidylinositol-anchored lipid protein transfer 1","protein_coding"
"Glyma.05G147800","No alias","Glycine max","Transducin family protein / WD-40 repeat family protein","protein_coding"
"Glyma.05G157500","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.05G189900","No alias","Glycine max","Amino acid kinase family protein","protein_coding"
"Glyma.05G191600","No alias","Glycine max","callose synthase 5","protein_coding"
"Glyma.05G244300","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.06G034900","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.06G081500","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.06G154600","No alias","Glycine max","Pentatricopeptide repeat (PPR-like) superfamily protein","protein_coding"
"Glyma.06G186400","No alias","Glycine max","ADP-glucose pyrophosphorylase family protein","protein_coding"
"Glyma.06G324700","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.07G009600","No alias","Glycine max","heat shock protein 60-3A","protein_coding"
"Glyma.07G035600","No alias","Glycine max","ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding","protein_coding"
"Glyma.07G036500","No alias","Glycine max","DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein","protein_coding"
"Glyma.07G083000","No alias","Glycine max","cytochrome P450, family 76, subfamily C, polypeptide 4","protein_coding"
"Glyma.07G102100","No alias","Glycine max","zinc finger (Ran-binding) family protein","protein_coding"
"Glyma.07G116066","No alias","Glycine max","FMN-linked oxidoreductases superfamily protein","protein_coding"
"Glyma.07G126000","No alias","Glycine max","Leucine-rich repeat (LRR) family protein","protein_coding"
"Glyma.07G128900","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.07G140000","No alias","Glycine max","glutathione S-transferase TAU 8","protein_coding"
"Glyma.07G260400","No alias","Glycine max","Met-10+ like family protein / kelch repeat-containing protein","protein_coding"
"Glyma.07G261900","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.07G270000","No alias","Glycine max","Zinc finger (C3HC4-type RING finger) family protein","protein_coding"
"Glyma.08G003400","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.08G079200","No alias","Glycine max","polygalacturonase inhibiting protein 1","protein_coding"
"Glyma.08G092900","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.08G139900","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.08G144500","No alias","Glycine max","DNAse I-like superfamily protein","protein_coding"
"Glyma.08G147500","No alias","Glycine max","Amino acid kinase family protein","protein_coding"
"Glyma.08G162000","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.08G202300","No alias","Glycine max","Integrase-type DNA-binding superfamily protein","protein_coding"
"Glyma.08G212500","No alias","Glycine max","blue-copper-binding protein","protein_coding"
"Glyma.08G253800","No alias","Glycine max","DNA/RNA polymerases superfamily protein","protein_coding"
"Glyma.08G291800","No alias","Glycine max","pentatricopeptide (PPR) repeat-containing protein","protein_coding"
"Glyma.08G324500","No alias","Glycine max","SHV3-like 1","protein_coding"
"Glyma.08G341700","No alias","Glycine max","kunitz trypsin inhibitor 1","protein_coding"
"Glyma.08G364000","No alias","Glycine max","TCP-1/cpn60 chaperonin family protein","protein_coding"
"Glyma.09G013300","No alias","Glycine max","pentatricopeptide (PPR) repeat-containing protein","protein_coding"
"Glyma.09G018100","No alias","Glycine max","Family of unknown function (DUF566)","protein_coding"
"Glyma.09G043600","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.09G046400","No alias","Glycine max","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein","protein_coding"
"Glyma.09G171000","No alias","Glycine max","embryo sac development arrest 7","protein_coding"
"Glyma.09G183300","No alias","Glycine max","Ribosomal protein S7e family protein","protein_coding"
"Glyma.09G246600","No alias","Glycine max","BAK1-interacting receptor-like kinase 1","protein_coding"
"Glyma.09G258900","No alias","Glycine max","SKP1-like 21","protein_coding"
"Glyma.09G259500","No alias","Glycine max","RHO guanyl-nucleotide exchange factor 3","protein_coding"
"Glyma.09G263800","No alias","Glycine max","SET domain-containing protein","protein_coding"
"Glyma.09G272000","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.10G003200","No alias","Glycine max","chlorophyllase 2","protein_coding"
"Glyma.10G015400","No alias","Glycine max","Pyridoxal phosphate (PLP)-dependent transferases superfamily protein","protein_coding"
"Glyma.10G018100","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.10G095200","No alias","Glycine max","nuclear RNA polymerase A1","protein_coding"
"Glyma.10G099800","No alias","Glycine max","Integrase-type DNA-binding superfamily protein","protein_coding"
"Glyma.10G122200","No alias","Glycine max","GTP-binding family protein","protein_coding"
"Glyma.10G127800","No alias","Glycine max","heat shock protein 60","protein_coding"
"Glyma.10G155000","No alias","Glycine max","seryl-tRNA synthetase / serine--tRNA ligase","protein_coding"
"Glyma.10G156100","No alias","Glycine max","Heavy metal transport/detoxification superfamily protein","protein_coding"
"Glyma.10G210500","No alias","Glycine max","GATA transcription factor 9","protein_coding"
"Glyma.10G233900","No alias","Glycine max","Ribosomal protein L36e family protein","protein_coding"
"Glyma.10G240000","No alias","Glycine max","Pentatricopeptide repeat (PPR-like) superfamily protein","protein_coding"
"Glyma.10G251700","No alias","Glycine max","xyloglucan endotransglucosylase/hydrolase 8","protein_coding"
"Glyma.10G264500","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.11G040100","No alias","Glycine max","SU(VAR)3-9 homolog 6","protein_coding"
"Glyma.11G048000","No alias","Glycine max","Phototropic-responsive NPH3 family protein","protein_coding"
"Glyma.11G054600","No alias","Glycine max","basic helix-loop-helix (bHLH) DNA-binding superfamily protein","protein_coding"
"Glyma.11G105600","No alias","Glycine max","Pentatricopeptide repeat (PPR-like) superfamily protein","protein_coding"
"Glyma.11G115400","No alias","Glycine max","Ribosomal protein S25 family protein","protein_coding"
"Glyma.11G153800","No alias","Glycine max","annexin 8","protein_coding"
"Glyma.11G158800","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.11G162365","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.11G163201","No alias","Glycine max","Translation elongation factor EFG/EF2 protein","protein_coding"
"Glyma.11G213300","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.11G240000","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.11G254200","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.12G009800","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.12G012400","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.12G036700","No alias","Glycine max","NAD(P)-linked oxidoreductase superfamily protein","protein_coding"
"Glyma.12G113700","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.12G156900","No alias","Glycine max","Plant protein of unknown function (DUF641)","protein_coding"
"Glyma.12G183600","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.12G184200","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.12G207500","No alias","Glycine max","prohibitin 2","protein_coding"
"Glyma.13G052700","No alias","Glycine max","K-box region and MADS-box transcription factor family protein","protein_coding"
"Glyma.13G060802","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.13G170300","No alias","Glycine max","RING/U-box superfamily protein","protein_coding"
"Glyma.13G260500","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.13G271400","No alias","Glycine max","cobalt ion binding","protein_coding"
"Glyma.13G318800","No alias","Glycine max","Ribosomal protein L24e family protein","protein_coding"
"Glyma.14G051300","No alias","Glycine max","Metallo-hydrolase/oxidoreductase superfamily protein","protein_coding"
"Glyma.14G061700","No alias","Glycine max","Fasciclin-like arabinogalactan family protein","protein_coding"
"Glyma.14G065800","No alias","Glycine max","histone acetyltransferase of the GNAT family 2","protein_coding"
"Glyma.14G073100","No alias","Glycine max","pfkB-like carbohydrate kinase family protein","protein_coding"
"Glyma.14G073800","No alias","Glycine max","ARM repeat superfamily protein","protein_coding"
"Glyma.14G108851","No alias","Glycine max","UDP-glucuronic acid decarboxylase 1","protein_coding"
"Glyma.14G172600","No alias","Glycine max","Major facilitator superfamily protein","protein_coding"
"Glyma.14G178300","No alias","Glycine max","zinc knuckle (CCHC-type) family protein","protein_coding"
"Glyma.14G184200","No alias","Glycine max","Pentatricopeptide repeat (PPR-like) superfamily protein","protein_coding"
"Glyma.14G191200","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.14G215100","No alias","Glycine max","high mobility group A","protein_coding"
"Glyma.15G017900","No alias","Glycine max","tRNAse Z4","protein_coding"
"Glyma.15G035600","No alias","Glycine max","translocon at the outer envelope membrane of chloroplasts 75-III","protein_coding"
"Glyma.15G058300","No alias","Glycine max","basic helix-loop-helix (bHLH) DNA-binding superfamily protein","protein_coding"
"Glyma.15G074000","No alias","Glycine max","glucan synthase-like 1","protein_coding"
"Glyma.15G081000","No alias","Glycine max","GDSL-like Lipase/Acylhydrolase superfamily protein","protein_coding"
"Glyma.15G123400","No alias","Glycine max","Phosphoglycerate mutase family protein","protein_coding"
"Glyma.15G164000","No alias","Glycine max","metaxin-related","protein_coding"
"Glyma.15G178400","No alias","Glycine max","aldehyde dehydrogenase 7B4","protein_coding"
"Glyma.15G263100","No alias","Glycine max","Aldolase-type TIM barrel family protein","protein_coding"
"Glyma.16G019100","No alias","Glycine max","Subtilisin-like serine endopeptidase family protein","protein_coding"
"Glyma.16G197200","No alias","Glycine max","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding"
"Glyma.16G209500","No alias","Glycine max","Protein of unknown function (DUF789)","protein_coding"
"Glyma.17G000250","No alias","Glycine max","glutamate receptor 2","protein_coding"
"Glyma.17G012200","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.17G018200","No alias","Glycine max","alpha/beta-Hydrolases superfamily protein","protein_coding"
"Glyma.17G018600","No alias","Glycine max","ribosomal protein S15A","protein_coding"
"Glyma.17G036200","No alias","Glycine max","Peroxidase superfamily protein","protein_coding"
"Glyma.17G066700","No alias","Glycine max","Protein kinase superfamily protein","protein_coding"
"Glyma.17G072100","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.17G078800","No alias","Glycine max","F-box/RNI-like superfamily protein","protein_coding"
"Glyma.17G099500","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.17G103300","No alias","Glycine max","Plant protein of unknown function (DUF827)","protein_coding"
"Glyma.17G120900","No alias","Glycine max","histone deacetylase 15","protein_coding"
"Glyma.17G128500","No alias","Glycine max","RNA-metabolising metallo-beta-lactamase family protein","protein_coding"
"Glyma.17G148200","No alias","Glycine max","tRNA/rRNA methyltransferase (SpoU) family protein","protein_coding"
"Glyma.17G153900","No alias","Glycine max","pentatricopeptide (PPR) repeat-containing protein","protein_coding"
"Glyma.17G163000","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.17G167700","No alias","Glycine max","CYCLIN D3;2","protein_coding"
"Glyma.17G178800","No alias","Glycine max","sucrose nonfermenting 1(SNF1)-related protein kinase 2.3","protein_coding"
"Glyma.17G224600","No alias","Glycine max","Concanavalin A-like lectin protein kinase family protein","protein_coding"
"Glyma.18G002000","No alias","Glycine max","glycine-rich RNA-binding protein 2","protein_coding"
"Glyma.18G007100","No alias","Glycine max","nuclear factor Y, subunit C13","protein_coding"
"Glyma.18G041100","No alias","Glycine max","glutamine synthetase 1;4","protein_coding"
"Glyma.18G085900","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.18G228300","No alias","Glycine max","SET domain-containing protein","protein_coding"
"Glyma.18G262200","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.18G266500","No alias","Glycine max","glycine-rich RNA-binding protein 3","protein_coding"
"Glyma.19G101500","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.19G139100","No alias","Glycine max","FAR1-related sequence 6","protein_coding"
"Glyma.19G141800","No alias","Glycine max","mitochondrial RNAediting factor 1","protein_coding"
"Glyma.19G143300","No alias","Glycine max","Leucine-rich repeat receptor-like protein kinase family protein","protein_coding"
"Glyma.19G176200","No alias","Glycine max","RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain","protein_coding"
"Glyma.19G182400","No alias","Glycine max","adenosine kinase 2","protein_coding"
"Glyma.19G207000","No alias","Glycine max","Uncharacterised protein family (UPF0497)","protein_coding"
"Glyma.19G252200","No alias","Glycine max","Actin-like ATPase superfamily protein","protein_coding"
"Glyma.19G259400","No alias","Glycine max","D-arabinono-1,4-lactone oxidase family protein","protein_coding"
"Glyma.20G127400","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.20G128800","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.20G193100","No alias","Glycine max","ribosomal protein L6 family protein","protein_coding"
"Glyma.20G216400","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.20G249700","No alias","Glycine max","Function unknown","protein_coding"
"GRMZM2G020201","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM2G026083","No alias","Zea mays","NB-ARC domain-containing disease resistance protein","protein_coding"
"GRMZM2G038575","No alias","Zea mays","XAP5 family protein","protein_coding"
"GRMZM2G057031","No alias","Zea mays","ATPase family associated with various cellular activities (AAA)","protein_coding"
"GRMZM2G068212","No alias","Zea mays","sulfate transporter 4.1","protein_coding"
"GRMZM2G073429","No alias","Zea mays","Major facilitator superfamily protein","protein_coding"
"GRMZM2G075257","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM2G076989","No alias","Zea mays","Purple acid phosphatases superfamily protein","protein_coding"
"GRMZM2G081668","No alias","Zea mays","TatD related DNase","protein_coding"
"GRMZM2G084513","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM2G087137","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM2G096037","No alias","Zea mays","catalytics","protein_coding"
"GRMZM2G102242","No alias","Zea mays","Mnd1 family protein","protein_coding"
"GRMZM2G103382","No alias","Zea mays","SHV3-like 5","protein_coding"
"GRMZM2G106105","No alias","Zea mays","Small nuclear ribonucleoprotein family protein","protein_coding"
"GRMZM2G129031","No alias","Zea mays","protein kinase 2B","protein_coding"
"GRMZM2G131623","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM2G132929","No alias","Zea mays","Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein","protein_coding"
"GRMZM2G138752","No alias","Zea mays","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"GRMZM2G141503","No alias","Zea mays","DHHC-type zinc finger family protein","protein_coding"
"GRMZM2G141634","No alias","Zea mays","Phosphoglycerate mutase family protein","protein_coding"
"GRMZM2G141941","No alias","Zea mays","Protein of unknown function (DUF1644)","protein_coding"
"GRMZM2G151614","No alias","Zea mays","suppressor of abi3-5","protein_coding"
"GRMZM2G164562","No alias","Zea mays","chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative","protein_coding"
"GRMZM2G166694","No alias","Zea mays","cullin 1","protein_coding"
"GRMZM2G172274","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM2G177721","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM2G300375","No alias","Zea mays","RNA helicase family protein","protein_coding"
"GRMZM2G324669","No alias","Zea mays","molybdopterin biosynthesis CNX1 protein / molybdenum cofactor biosynthesis enzyme CNX1 (CNX1)","protein_coding"
"GRMZM2G364988","No alias","Zea mays","aconitase 1","protein_coding"
"GRMZM2G395749","No alias","Zea mays","DNA binding","protein_coding"
"GRMZM2G396516","No alias","Zea mays","chloride channel F","protein_coding"
"GRMZM2G405622","No alias","Zea mays","expansin B2","protein_coding"
"GRMZM2G421231","No alias","Zea mays","Pentatricopeptide repeat (PPR-like) superfamily protein","protein_coding"
"GRMZM2G464137","No alias","Zea mays","S-methyl-5-thioribose kinase","protein_coding"
"GRMZM5G805124","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM5G863656","No alias","Zea mays","Ribosomal protein S3Ae","protein_coding"
"GRMZM5G878970","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM5G888791","No alias","Zea mays","NAD(P)-binding Rossmann-fold superfamily protein","protein_coding"
"GRMZM6G304724","No alias","Zea mays","MUTS-homologue 5","protein_coding"
"HORVU0Hr1G005500.4","No alias","Hordeum vulgare","component *(uS11m) of small mitoribosomal-subunit proteome","protein_coding"
"HORVU0Hr1G006050.1","No alias","Hordeum vulgare","EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"HORVU0Hr1G010350.1","No alias","Hordeum vulgare","FRS/FRF-type transcription factor","protein_coding"
"HORVU1Hr1G002740.1","No alias","Hordeum vulgare","regulatory protein *(RLD) of gravity sensing","protein_coding"
"HORVU1Hr1G004510.5","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G014010.25","No alias","Hordeum vulgare","SSU processome assembly factor *(RRP5)","protein_coding"
"HORVU1Hr1G021130.2","No alias","Hordeum vulgare","asparagine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond","protein_coding"
"HORVU1Hr1G022420.1","No alias","Hordeum vulgare","component *(U1A) of U1 snRNP complex","protein_coding"
"HORVU1Hr1G024670.1","No alias","Hordeum vulgare","primexine deposition factor *(NPU)","protein_coding"
"HORVU1Hr1G033060.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G039260.2","No alias","Hordeum vulgare","component *(eIF-iso4E) of eIF-iso4F unwinding complex","protein_coding"
"HORVU1Hr1G042560.3","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G043520.8","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G047690.1","No alias","Hordeum vulgare","cofactor of post-CCT Tubulin folding pathway *(TFC-D)","protein_coding"
"HORVU1Hr1G048290.1","No alias","Hordeum vulgare","phototropin signalling factor *(PKS)","protein_coding"
"HORVU1Hr1G049280.1","No alias","Hordeum vulgare","class tau glutathione S-transferase","protein_coding"
"HORVU1Hr1G051570.3","No alias","Hordeum vulgare","auxiliary component *(NAA25) of NatB N-terminal acetylase complex","protein_coding"
"HORVU1Hr1G068650.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G073710.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G078030.47","No alias","Hordeum vulgare","TruD-type tRNA pseudouridine synthase","protein_coding"
"HORVU1Hr1G078370.2","No alias","Hordeum vulgare","glutamate-tRNA ligase","protein_coding"
"HORVU1Hr1G080980.2","No alias","Hordeum vulgare","regulatory protein *(RGG) of mRNA quality control","protein_coding"
"HORVU1Hr1G081320.9","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G091090.9","No alias","Hordeum vulgare","sterol delta14 reductase & EC_1.3 oxidoreductase acting on CH-CH group of donor","protein_coding"
"HORVU1Hr1G094250.9","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G002010.5","No alias","Hordeum vulgare","EC_1.11 oxidoreductase acting on peroxide as acceptor","protein_coding"
"HORVU2Hr1G028060.16","No alias","Hordeum vulgare","RNA helicase component *(HEN2) of Nuclear Exosome Targeting (NEXT) activation complex","protein_coding"
"HORVU2Hr1G034130.5","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G044650.1","No alias","Hordeum vulgare","DUF26 protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"HORVU2Hr1G046000.3","No alias","Hordeum vulgare","Golgi-ER retrograde trafficking cargo receptor *(PDI-C)","protein_coding"
"HORVU2Hr1G053380.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G059620.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G064130.1","No alias","Hordeum vulgare","SSU processome assembly factor *(UTP6)","protein_coding"
"HORVU2Hr1G069110.24","No alias","Hordeum vulgare","regulatory protein *(ROQH1) of non-photochemical quenching","protein_coding"
"HORVU2Hr1G075470.2","No alias","Hordeum vulgare","SnRK2 SNF1-related protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"HORVU2Hr1G078350.3","No alias","Hordeum vulgare","peptidyl-prolyl cis-trans isomerase *(FKBP43/53)","protein_coding"
"HORVU2Hr1G082280.3","No alias","Hordeum vulgare","pre-rRNA cleavage factor involved in ITS1 rRNA removal *(SLX9/SAHY)","protein_coding"
"HORVU2Hr1G094420.1","No alias","Hordeum vulgare","EC_4.3 carbon-nitrogen lyase & hydroxy-tetrahydrodihydrodipicolinate synthase","protein_coding"
"HORVU2Hr1G100380.3","No alias","Hordeum vulgare","galacturonokinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"HORVU2Hr1G102140.2","No alias","Hordeum vulgare","transposon-derived factor HDP1","protein_coding"
"HORVU2Hr1G106380.5","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G107220.3","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G107250.1","No alias","Hordeum vulgare","EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"HORVU2Hr1G107620.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G125850.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G023970.2","No alias","Hordeum vulgare","glutaredoxin maturation factor (GRXS15) of iron-sulfur cluster assembly machinery","protein_coding"
"HORVU3Hr1G024210.9","No alias","Hordeum vulgare","subfamily ABCC transporter","protein_coding"
"HORVU3Hr1G024970.12","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G026410.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G062800.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G062830.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G072910.1","No alias","Hordeum vulgare","EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"HORVU3Hr1G081760.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G086480.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G092660.1","No alias","Hordeum vulgare","component *(HAP6) of oligosaccharyl transferase (OST) complex","protein_coding"
"HORVU3Hr1G096190.7","No alias","Hordeum vulgare","WAK/WAKL protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"HORVU3Hr1G107020.3","No alias","Hordeum vulgare","cofactor of plastid-encoded RNA polymerase *(TAC9) & ssDNA-binding protein *(OSB)","protein_coding"
"HORVU3Hr1G108390.1","No alias","Hordeum vulgare","UMP synthase *(UMPS)","protein_coding"
"HORVU4Hr1G000030.5","No alias","Hordeum vulgare","LRR-XII protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"HORVU4Hr1G014370.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G020660.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G023430.1","No alias","Hordeum vulgare","obtusifoliol 14-alpha demethylase & EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen","protein_coding"
"HORVU4Hr1G028610.1","No alias","Hordeum vulgare","nucleocytoplasmic transport karyopherin *(PLANTKAP)","protein_coding"
"HORVU4Hr1G029910.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G041810.13","No alias","Hordeum vulgare","scaffold component *(Nop58) of snoRNP rRNA methylation complex","protein_coding"
"HORVU4Hr1G050710.6","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G051720.1","No alias","Hordeum vulgare","channel-forming component *(Tom40) of outer mitochondrion membrane TOM translocation system","protein_coding"
"HORVU4Hr1G052900.1","No alias","Hordeum vulgare","component *(NDUFA5/B13) of NADH dehydrogenase alpha subcomplex","protein_coding"
"HORVU4Hr1G055880.1","No alias","Hordeum vulgare","E1 ubiquitin-activating enzyme","protein_coding"
"HORVU4Hr1G059250.3","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G061810.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G075390.1","No alias","Hordeum vulgare","scaffold nucleoporin of nuclear pore complex","protein_coding"
"HORVU4Hr1G083870.4","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G008050.1","No alias","Hordeum vulgare","EC_1.13 oxidoreductase acting on single donor with incorporation of molecular oxygen (oxygenase) & neoxanthin cleavage protein","protein_coding"
"HORVU5Hr1G019030.9","No alias","Hordeum vulgare","EC_2.7 transferase transferring phosphorus-containing group & pyrophosphate-dependent phosphofructokinase","protein_coding"
"HORVU5Hr1G039660.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G043120.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G047060.7","No alias","Hordeum vulgare","cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)","protein_coding"
"HORVU5Hr1G051660.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G051690.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G053310.3","No alias","Hordeum vulgare","component *(TOP6B) of somatic DNA topoisomerase VI complex","protein_coding"
"HORVU5Hr1G054060.2","No alias","Hordeum vulgare","ferrochelatase *(FC)","protein_coding"
"HORVU5Hr1G055190.3","No alias","Hordeum vulgare","transcription factor *(CRF) & subgroup ERF-VI transcription factor","protein_coding"
"HORVU5Hr1G056950.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G070260.1","No alias","Hordeum vulgare","HD-ZIP I/II-type transcription factor","protein_coding"
"HORVU5Hr1G073740.5","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G075060.3","No alias","Hordeum vulgare","mannan synthesis accessory protein *(MSR)","protein_coding"
"HORVU5Hr1G076370.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G098960.2","No alias","Hordeum vulgare","alpha-Tubulin component *(TUA) of alpha-beta-Tubulin heterodimer","protein_coding"
"HORVU5Hr1G114640.2","No alias","Hordeum vulgare","centromere maintenance factor *(GIP) & accessory component *(GIP1) of microtubule Tubulin heterodimer formation","protein_coding"
"HORVU5Hr1G117770.4","No alias","Hordeum vulgare","component *(NRPA1) of RNA polymerase I complex","protein_coding"
"HORVU5Hr1G119520.5","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G003470.2","No alias","Hordeum vulgare","EC_2.6 transferase transferring nitrogenous group & aspartate aminotransferase","protein_coding"
"HORVU6Hr1G004380.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G007470.1","No alias","Hordeum vulgare","histone *(H3)","protein_coding"
"HORVU6Hr1G014540.1","No alias","Hordeum vulgare","alkaline sucrose-specific invertase *(CIN)","protein_coding"
"HORVU6Hr1G016970.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G027570.6","No alias","Hordeum vulgare","component *(RRP45) of exosome EXO9 core complex","protein_coding"
"HORVU6Hr1G032550.1","No alias","Hordeum vulgare","component *(mS81) of small mitoribosomal-subunit proteome","protein_coding"
"HORVU6Hr1G044170.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G051930.3","No alias","Hordeum vulgare","histone chaperone *(NRP)","protein_coding"
"HORVU6Hr1G061020.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G066930.19","No alias","Hordeum vulgare","N2-acetylornithine deacetylase","protein_coding"
"HORVU6Hr1G071790.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G074220.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G082340.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G091860.1","No alias","Hordeum vulgare","methyltransferase component *(Nop1/fibrillarin) of snoRNP rRNA methylation complex","protein_coding"
"HORVU6Hr1G094400.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G024040.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G031100.1","No alias","Hordeum vulgare","scaffold nucleoporin of nuclear pore complex *(NUP188)","protein_coding"
"HORVU7Hr1G032070.1","No alias","Hordeum vulgare","regulatory component *(RPT1) of 26S proteasome","protein_coding"
"HORVU7Hr1G034560.7","No alias","Hordeum vulgare","aminoalcohol phosphotransferase & aminoalcohol phosphotransferase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"HORVU7Hr1G041500.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G042370.9","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G045770.7","No alias","Hordeum vulgare","microtubule-associated protein *(MAP65-2)","protein_coding"
"HORVU7Hr1G047020.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G057010.1","No alias","Hordeum vulgare","Rab GTPase-activating protein","protein_coding"
"HORVU7Hr1G060530.12","No alias","Hordeum vulgare","translation initiation factor *(IF-2)","protein_coding"
"HORVU7Hr1G060930.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G066750.5","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G089470.2","No alias","Hordeum vulgare","component *(uL1m) of large mitoribosomal-subunit proteome","protein_coding"
"HORVU7Hr1G099340.17","No alias","Hordeum vulgare","EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"HORVU7Hr1G101050.3","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G118070.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G118230.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G121390.3","No alias","Hordeum vulgare","DNA bending architectural protein *(HMG-B)","protein_coding"
"Kfl00001_0660","kfl00001_0660_v1.1","Klebsormidium nitens","(at4g34910 : 463.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 35246 Blast hits to 34671 proteins in 2939 species: Archae - 524; Bacteria - 16250; Metazoa - 5646; Fungi - 4238; Plants - 2336; Viruses - 4; Other Eukaryotes - 6248 (source: NCBI BLink). & (p46942|db10_nicsy : 112.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 926.0) &  (original description: no original description)","protein_coding"
"Kfl00001_0800","kfl00001_0800_v1.1","Klebsormidium nitens","(at5g11500 : 284.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF814 (InterPro:IPR008532). & (reliability: 568.0) &  (original description: no original description)","protein_coding"
"Kfl00005_0430","kfl00005_0430_v1.1","Klebsormidium nitens","(at4g02790 : 293.0) GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein, ribosome biogenesis, YlqF (InterPro:IPR019991); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G41670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 586.0) &  (original description: no original description)","protein_coding"
"Kfl00008_0250","kfl00008_0250_v1.1","Klebsormidium nitens","(at5g44600 : 225.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G44590.1); Has 186 Blast hits to 186 proteins in 61 species: Archae - 4; Bacteria - 77; Metazoa - 2; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). & (reliability: 450.0) &  (original description: no original description)","protein_coding"
"Kfl00013_0480","kfl00013_0480_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00017_0480","kfl00017_0480_v1.1","Klebsormidium nitens","(at1g10490 : 1082.0) CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1726 (InterPro:IPR013562), Domain  of unknown function DUF699, exodeoxyribonuclease V alpha chain (InterPro:IPR007807); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (TAIR:AT3G57940.1); Has 1351 Blast hits to 1310 proteins in 616 species: Archae - 139; Bacteria - 698; Metazoa - 170; Fungi - 143; Plants - 51; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). & (reliability: 2164.0) &  (original description: no original description)","protein_coding"
"Kfl00018_0340","kfl00018_0340_v1.1","Klebsormidium nitens","(at2g47300 : 114.0) ribonuclease Ps; FUNCTIONS IN: ribonuclease P activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, sperm cell, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: POPLD (InterPro:IPR012590); Has 176 Blast hits to 168 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 58; Fungi - 69; Plants - 36; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). & (reliability: 228.0) &  (original description: no original description)","protein_coding"
"Kfl00025_0190","kfl00025_0190_v1.1","Klebsormidium nitens","(at4g39040 : 89.4) RNA-binding CRS1 / YhbY (CRM) domain protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: RNA-binding CRS1 / YhbY (CRM) domain protein (TAIR:AT2G21350.1); Has 7808 Blast hits to 5439 proteins in 1394 species: Archae - 38; Bacteria - 2293; Metazoa - 2592; Fungi - 448; Plants - 290; Viruses - 198; Other Eukaryotes - 1949 (source: NCBI BLink). & (reliability: 178.8) &  (original description: no original description)","protein_coding"
"Kfl00031_0040","kfl00031_0040_v1.1","Klebsormidium nitens","(at2g45270 : 377.0) Mitochondrial protein essential for embryo development.; glycoprotease 1 (GCP1); FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis, embryo development; LOCATED IN: mitochondrial inner membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M22, O-sialoglycoprotein peptidase (InterPro:IPR022450), Peptidase M22, glycoprotease (InterPro:IPR000905), Peptidase M22, glycoprotease, subgroup (InterPro:IPR017861); BEST Arabidopsis thaliana protein match is: Actin-like ATPase superfamily protein (TAIR:AT4G22720.2); Has 11122 Blast hits to 11085 proteins in 2922 species: Archae - 268; Bacteria - 6121; Metazoa - 269; Fungi - 294; Plants - 213; Viruses - 0; Other Eukaryotes - 3957 (source: NCBI BLink). & (reliability: 754.0) &  (original description: no original description)","protein_coding"
"Kfl00034_0120","kfl00034_0120_v1.1","Klebsormidium nitens","(at4g04940 : 872.0) transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: rRNA processing; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Small-subunit processome, Utp21 (InterPro:IPR007319), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G61210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1744.0) &  (original description: no original description)","protein_coding"
"Kfl00034_0350","kfl00034_0350_v1.1","Klebsormidium nitens","(at3g55340 : 157.0) Plant-specific protein. Interacts with phragmoplastin, Rop1 and Rop2. Involved in cell plate formation.; phragmoplastin interacting protein 1 (PHIP1); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G35410.1); Has 17490 Blast hits to 13137 proteins in 598 species: Archae - 10; Bacteria - 621; Metazoa - 8175; Fungi - 2466; Plants - 2451; Viruses - 16; Other Eukaryotes - 3751 (source: NCBI BLink). & (reliability: 314.0) &  (original description: no original description)","protein_coding"
"Kfl00038_0300","kfl00038_0300_v1.1","Klebsormidium nitens","(at3g53500 : 215.0) RSZ32; FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: arginine/serine-rich zinc knuckle-containing protein 33 (TAIR:AT2G37340.1); Has 30335 Blast hits to 26620 proteins in 660 species: Archae - 6; Bacteria - 352; Metazoa - 8518; Fungi - 1445; Plants - 2334; Viruses - 16371; Other Eukaryotes - 1309 (source: NCBI BLink). & (reliability: 430.0) &  (original description: no original description)","protein_coding"
"Kfl00038_g32","kfl00038_g32_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00052_0430","kfl00052_0430_v1.1","Klebsormidium nitens","(at5g66470 : 368.0) RNA binding;GTP binding; FUNCTIONS IN: RNA binding, GTP binding; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 2 (InterPro:IPR004044), K Homology, prokaryotic type (InterPro:IPR009019), Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein Era (InterPro:IPR005662), GTP-binding protein, HSR1-related (InterPro:IPR002917), K homology-like, alpha/beta (InterPro:IPR015946); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT1G30960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (o82626|erg_antma : 107.0) GTP-binding protein ERG - Antirrhinum majus (Garden snapdragon) & (reliability: 736.0) &  (original description: no original description)","protein_coding"
"Kfl00054_0410","kfl00054_0410_v1.1","Klebsormidium nitens","(at1g16870 : 117.0) mitochondrial 28S ribosomal protein S29-related; CONTAINS InterPro DOMAIN/s: Ribosomal protein S23/S29, mitochondrial (InterPro:IPR019368); Has 239 Blast hits to 239 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 38; Plants - 38; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). & (reliability: 234.0) &  (original description: no original description)","protein_coding"
"Kfl00077_0140","kfl00077_0140_v1.1","Klebsormidium nitens","(at1g71750 : 189.0) Encodes a protein with  hypoxanthine-guanine-phosphoribosyltransferase activity. Unlike some related enzymes, it does not appear to act on xanthine in vitro. The enzyme catalyzes reactions occurring in both directions, but appears to prefer acting on guanine, followed by hypoxanthine, in vitro. The enzyme is likely to function in purine salvage pathways and appears to be important for seed germination.; Hypoxanthine-guanine phosphoribosyltransferase (HGPT); FUNCTIONS IN: transferase activity, hypoxanthine phosphoribosyltransferase activity; INVOLVED IN: guanine metabolic process, nucleoside metabolic process, seed germination, hypoxanthine metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Hypoxanthine phosphoribosyl transferase (InterPro:IPR005904), Phosphoribosyltransferase (InterPro:IPR000836). & (reliability: 378.0) &  (original description: no original description)","protein_coding"
"Kfl00097_0060","kfl00097_0060_v1.1","Klebsormidium nitens","(at5g49880 : 207.0) mitotic checkpoint family protein; CONTAINS InterPro DOMAIN/s: Mitotic checkpoint (InterPro:IPR008672); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 414.0) &  (original description: no original description)","protein_coding"
"Kfl00100_0020","kfl00100_0020_v1.1","Klebsormidium nitens","(at1g79340 : 231.0) metacaspase 4 (MC4); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 5 (TAIR:AT1G79330.1); Has 1195 Blast hits to 1161 proteins in 285 species: Archae - 6; Bacteria - 340; Metazoa - 3; Fungi - 271; Plants - 332; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink). & (reliability: 462.0) &  (original description: no original description)","protein_coding"
"Kfl00104_0020","kfl00104_0020_v1.1","Klebsormidium nitens","(at1g56050 : 489.0) GTP-binding protein-related; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF933 (InterPro:IPR013029), TGS-like (InterPro:IPR012676), GTP1/OBG (InterPro:IPR006073), Conserved hypothetical protein CHP00092 (InterPro:IPR004396), GTP-binding protein, HSR1-related (InterPro:IPR002917), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: GTP binding (TAIR:AT1G30580.1); Has 18400 Blast hits to 18396 proteins in 3002 species: Archae - 377; Bacteria - 10244; Metazoa - 785; Fungi - 603; Plants - 304; Viruses - 0; Other Eukaryotes - 6087 (source: NCBI BLink). & (reliability: 978.0) &  (original description: no original description)","protein_coding"
"Kfl00107_0190","kfl00107_0190_v1.1","Klebsormidium nitens","(at5g64670 : 256.0) Ribosomal protein L18e/L15 superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, large ribosomal subunit; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131), Ribosomal protein L15, bacterial-type (InterPro:IPR005749); BEST Arabidopsis thaliana protein match is: ribosomal protein L15 (TAIR:AT3G25920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 512.0) &  (original description: no original description)","protein_coding"
"Kfl00116_0270","kfl00116_0270_v1.1","Klebsormidium nitens","(at5g23200 : 166.0) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 332.0) &  (original description: no original description)","protein_coding"
"Kfl00118_0280","kfl00118_0280_v1.1","Klebsormidium nitens","(at3g28460 : 230.0) methyltransferases; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: rRNA methylation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00095 (InterPro:IPR004398); Has 4869 Blast hits to 4869 proteins in 1755 species: Archae - 2; Bacteria - 3296; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 1522 (source: NCBI BLink). & (reliability: 460.0) &  (original description: no original description)","protein_coding"
"Kfl00129_0030","kfl00129_0030_v1.1","Klebsormidium nitens","(at1g59990 : 167.0) DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G40700.1); Has 57869 Blast hits to 34290 proteins in 2955 species: Archae - 517; Bacteria - 30307; Metazoa - 8550; Fungi - 6961; Plants - 3872; Viruses - 6; Other Eukaryotes - 7656 (source: NCBI BLink). & (reliability: 334.0) &  (original description: no original description)","protein_coding"
"Kfl00137_0180","kfl00137_0180_v1.1","Klebsormidium nitens","(at5g01590 : 81.3) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to 59 proteins in 31 species: Archae - 0; Bacteria - 20; Metazoa - 1; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (reliability: 162.6) &  (original description: no original description)","protein_coding"
"Kfl00144_0190","kfl00144_0190_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00151_0160","kfl00151_0160_v1.1","Klebsormidium nitens","(at2g35130 : 111.0) Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1). & (q76c99|rf1_orysa : 85.5) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 214.0) &  (original description: no original description)","protein_coding"
"Kfl00153_0150","kfl00153_0150_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00154_0170","kfl00154_0170_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00158_0120","kfl00158_0120_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00160_0150","kfl00160_0150_v1.1","Klebsormidium nitens","(at3g25470 : 313.0) bacterial hemolysin-related; FUNCTIONS IN: methyltransferase activity, RNA binding, nucleic acid binding; INVOLVED IN: methylation, hemolysis by symbiont of host erythrocytes; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding S4 (InterPro:IPR002942), Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877), Haemolysin A (InterPro:IPR004538); Has 3788 Blast hits to 3763 proteins in 1590 species: Archae - 10; Bacteria - 3068; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 663 (source: NCBI BLink). & (reliability: 626.0) &  (original description: no original description)","protein_coding"
"Kfl00167_0120","kfl00167_0120_v1.1","Klebsormidium nitens","(at3g17465 : 335.0) encodes a putative L3 ribosomal protein targeted to the plastid.; ribosomal protein L3 plastid (RPL3P); CONTAINS InterPro DOMAIN/s: Ribosomal protein L3 (InterPro:IPR000597), Ribosomal protein L3, bacterial/organelle-type (InterPro:IPR019927), Ribosomal protein L3, conserved site (InterPro:IPR019926), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Ribosomal protein L3 family protein (TAIR:AT2G43030.1); Has 8719 Blast hits to 8719 proteins in 2855 species: Archae - 267; Bacteria - 5444; Metazoa - 136; Fungi - 140; Plants - 91; Viruses - 0; Other Eukaryotes - 2641 (source: NCBI BLink). & (o80360|rk3_tobac : 159.0) 50S ribosomal protein L3, chloroplast precursor (Fragment) - Nicotiana tabacum (Common tobacco) & (reliability: 670.0) &  (original description: no original description)","protein_coding"
"Kfl00168_0050","kfl00168_0050_v1.1","Klebsormidium nitens","(at2g41350 : 205.0) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G21980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 410.0) &  (original description: no original description)","protein_coding"
"Kfl00170_0160","kfl00170_0160_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00176_0160","kfl00176_0160_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00177_0090","kfl00177_0090_v1.1","Klebsormidium nitens"," (original description: no original description)","protein_coding"
"Kfl00225_0120","kfl00225_0120_v1.1","Klebsormidium nitens","(at5g18570 : 167.0) Encodes AtObgC, a plant ortholog of bacterial Obg.  AtObgC is a chloroplast-targeting GTPase essential for early embryogenesis. Mutations in this locus result in embryo lethality. The protein is  dually localized in the stroma and the inner envelope membrane and is involved in thylakoid membrane biogenesis.; EMBRYO DEFECTIVE 269 (EMB269); FUNCTIONS IN: GTPase activity; INVOLVED IN: response to light stimulus, thylakoid membrane organization, embryo development, embryo development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast stroma, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG subdomain (InterPro:IPR006169), GTP-binding protein GTP1/OBG, C-terminal (InterPro:IPR015349), GTP1/OBG (InterPro:IPR006073), GTP1/OBG, conserved site (InterPro:IPR006074), GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein Obg/CgtA (InterPro:IPR014100); BEST Arabidopsis thaliana protein match is: GTP-binding protein Obg/CgtA (TAIR:AT1G07615.1); Has 23458 Blast hits to 23162 proteins in 3000 species: Archae - 644; Bacteria - 14053; Metazoa - 1121; Fungi - 826; Plants - 464; Viruses - 52; Other Eukaryotes - 6298 (source: NCBI BLink). & (reliability: 334.0) &  (original description: no original description)","protein_coding"
"Kfl00245_0020","kfl00245_0020_v1.1","Klebsormidium nitens","(at1g23280 : 213.0) MAK16 protein-related; CONTAINS InterPro DOMAIN/s: Mak16 protein (InterPro:IPR006958); Has 4868 Blast hits to 3538 proteins in 334 species: Archae - 9; Bacteria - 248; Metazoa - 1831; Fungi - 653; Plants - 272; Viruses - 128; Other Eukaryotes - 1727 (source: NCBI BLink). & (reliability: 426.0) &  (original description: no original description)","protein_coding"
"Kfl00247_0030","kfl00247_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00250_0190","kfl00250_0190_v1.1","Klebsormidium nitens","(at4g28200 : 279.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). & (reliability: 558.0) &  (original description: no original description)","protein_coding"
"Kfl00259_0200","kfl00259_0200_v1.1","Klebsormidium nitens","(at5g41480 : 217.0) Encodes a dihydrofolate synthetase based on yeast complementation experiments. This protein is involved in folate biosynthesis.; GLOBULAR ARREST1 (GLA1); FUNCTIONS IN: dihydrofolate synthase activity; INVOLVED IN: one-carbon metabolic process, embryo development ending in seed dormancy; LOCATED IN: mitochondrial matrix; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mur ligase, central (InterPro:IPR013221), Folylpolyglutamate synthetase, conserved site (InterPro:IPR018109), Mur ligase, C-terminal (InterPro:IPR004101), Folylpolyglutamate synthetase (InterPro:IPR001645); BEST Arabidopsis thaliana protein match is: DHFS-FPGS homolog B (TAIR:AT5G05980.2); Has 8245 Blast hits to 8243 proteins in 2505 species: Archae - 47; Bacteria - 5105; Metazoa - 156; Fungi - 354; Plants - 131; Viruses - 0; Other Eukaryotes - 2452 (source: NCBI BLink). & (reliability: 434.0) &  (original description: no original description)","protein_coding"
"Kfl00268_0060","kfl00268_0060_v1.1","Klebsormidium nitens","(at1g65030 : 223.0) This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase; Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: protein binding, nucleotide binding; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); Has 5965 Blast hits to 4406 proteins in 385 species: Archae - 22; Bacteria - 1754; Metazoa - 1570; Fungi - 1477; Plants - 405; Viruses - 0; Other Eukaryotes - 737 (source: NCBI BLink). & (reliability: 446.0) &  (original description: no original description)","protein_coding"
"Kfl00302_0120","kfl00302_0120_v1.1","Klebsormidium nitens","(at1g27090 : 138.0) glycine-rich protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24690.1); Has 13206 Blast hits to 7104 proteins in 677 species: Archae - 0; Bacteria - 2039; Metazoa - 5686; Fungi - 1146; Plants - 2571; Viruses - 80; Other Eukaryotes - 1684 (source: NCBI BLink). & (reliability: 276.0) &  (original description: no original description)","protein_coding"
"Kfl00304_0100","kfl00304_0100_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00311_0110","kfl00311_0110_v1.1","Klebsormidium nitens","(at3g46100 : 516.0) histidyl-tRNA synthetase; Histidyl-tRNA synthetase 1 (HRS1); FUNCTIONS IN: histidine-tRNA ligase activity; INVOLVED IN: histidyl-tRNA aminoacylation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidyl-tRNA synthetase, class IIa, subgroup (InterPro:IPR015807), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Anticodon-binding (InterPro:IPR004154), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Histidyl-tRNA synthetase, class IIa (InterPro:IPR004516); BEST Arabidopsis thaliana protein match is: Class II aaRS and biotin synthetases superfamily protein (TAIR:AT5G03406.1); Has 12183 Blast hits to 12140 proteins in 2982 species: Archae - 258; Bacteria - 7725; Metazoa - 293; Fungi - 147; Plants - 90; Viruses - 0; Other Eukaryotes - 3670 (source: NCBI BLink). & (p93422|syh_orysa : 139.0) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA ligase) (HisRS) - Oryza sativa (Rice) & (reliability: 1032.0) &  (original description: no original description)","protein_coding"
"Kfl00332_0120","kfl00332_0120_v1.1","Klebsormidium nitens","(at5g66080 : 266.0) Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C,  manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 532.0) &  (original description: no original description)","protein_coding"
"Kfl00355_0030","kfl00355_0030_v1.1","Klebsormidium nitens","(at1g06950 : 642.0) Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis.; translocon at the inner envelope membrane of chloroplasts 110 (TIC110); INVOLVED IN: protein import into chloroplast stroma, chloroplast organization; LOCATED IN: chloroplast, membrane, chloroplast envelope, Tic complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 131 Blast hits to 118 proteins in 52 species: Archae - 4; Bacteria - 6; Metazoa - 16; Fungi - 9; Plants - 66; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). & (reliability: 1284.0) &  (original description: no original description)","protein_coding"
"Kfl00377_0020","kfl00377_0020_v1.1","Klebsormidium nitens","(at5g64420 : 214.0) DNA polymerase V family; FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding; INVOLVED IN: DNA replication, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase V (InterPro:IPR007015); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 428.0) &  (original description: no original description)","protein_coding"
"Kfl00412_0110","kfl00412_0110_v1.1","Klebsormidium nitens","(at1g55870 : 145.0) Encodes a poly(A)-specific ribonuclease, AtPARN. Expression of AtPARN is upregulated by ABA or stress treatment. Mutant is hypersensitivity to salicylic acid as well as ABA.; ABA-HYPERSENSITIVE GERMINATION 2 (AHG2); FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: response to abscisic acid stimulus, RNA modification, response to stress, response to salicylic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G25430.1); Has 352 Blast hits to 351 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 63; Plants - 63; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink). & (reliability: 290.0) &  (original description: no original description)","protein_coding"
"Kfl00414_0100","kfl00414_0100_v1.1","Klebsormidium nitens","(at5g02860 : 187.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G18940.1); Has 78068 Blast hits to 16233 proteins in 339 species: Archae - 4; Bacteria - 143; Metazoa - 1692; Fungi - 1544; Plants - 71427; Viruses - 0; Other Eukaryotes - 3258 (source: NCBI BLink). & (q76c99|rf1_orysa : 177.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 374.0) &  (original description: no original description)","protein_coding"
"Kfl00419_0120","kfl00419_0120_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00470_0040","kfl00470_0040_v1.1","Klebsormidium nitens","(at4g01050 : 94.0) hydroxyproline-rich glycoprotein family protein, contains a rhodanese homology domain. Required  for anchoring the FNR flavoenzyme to the thylakoid membranes  and sustaining high efficiency photosynthetic linear electron flow.; thylakoid rhodanese-like (TROL); FUNCTIONS IN: protein binding; INVOLVED IN: defense response to bacterium, photosynthetic electron transport in photosystem II; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT3G25480.1); Has 6015 Blast hits to 4196 proteins in 851 species: Archae - 23; Bacteria - 2268; Metazoa - 876; Fungi - 517; Plants - 614; Viruses - 167; Other Eukaryotes - 1550 (source: NCBI BLink). & (reliability: 188.0) &  (original description: no original description)","protein_coding"
"Kfl00488_0070","kfl00488_0070_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00516_0020","kfl00516_0020_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00519_0070","kfl00519_0070_v1.1","Klebsormidium nitens","(at5g14580 : 753.0) polyribonucleotide nucleotidyltransferase, putative; FUNCTIONS IN: polyribonucleotide nucleotidyltransferase activity, 3'-5'-exoribonuclease activity, RNA binding, nucleic acid binding; INVOLVED IN: mRNA catabolic process, RNA processing; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type (InterPro:IPR015848), K Homology (InterPro:IPR004087), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Polyribonucleotide nucleotidyltransferase (InterPro:IPR012162); BEST Arabidopsis thaliana protein match is: polyribonucleotide nucleotidyltransferase, putative (TAIR:AT3G03710.1); Has 30004 Blast hits to 26962 proteins in 2901 species: Archae - 317; Bacteria - 19794; Metazoa - 489; Fungi - 141; Plants - 452; Viruses - 0; Other Eukaryotes - 8811 (source: NCBI BLink). & (reliability: 1506.0) &  (original description: no original description)","protein_coding"
"Kfl00564_0050","kfl00564_0050_v1.1","Klebsormidium nitens","(at2g19870 : 237.0) tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: methyltransferase activity, RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537), RNA methyltransferase TrmH, group 3 (InterPro:IPR004441), RNA 2-O ribose methyltransferase, substrate binding (InterPro:IPR013123); Has 11661 Blast hits to 11576 proteins in 2636 species: Archae - 7; Bacteria - 7686; Metazoa - 749; Fungi - 216; Plants - 206; Viruses - 3; Other Eukaryotes - 2794 (source: NCBI BLink). & (reliability: 474.0) &  (original description: no original description)","protein_coding"
"Kfl00584_0050","kfl00584_0050_v1.1","Klebsormidium nitens","(at1g68100 : 225.0) member of IAA-alanine resistance protein 1; IAA-ALANINE RESISTANT 1 (IAR1); FUNCTIONS IN: metal ion transmembrane transporter activity; INVOLVED IN: transmembrane transport, metal ion transport; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); Has 3060 Blast hits to 2483 proteins in 472 species: Archae - 4; Bacteria - 929; Metazoa - 1358; Fungi - 209; Plants - 119; Viruses - 3; Other Eukaryotes - 438 (source: NCBI BLink). & (reliability: 450.0) &  (original description: no original description)","protein_coding"
"Kfl00605_0050","kfl00605_0050_v1.1","Klebsormidium nitens","(at5g23690 : 181.0) Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G48830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 362.0) &  (original description: no original description)","protein_coding"
"Kfl00632_0060","kfl00632_0060_v1.1","Klebsormidium nitens","(at2g39140 : 256.0) Suppressor of var2 variegation phenotype. Chloroplast localized. Loss of function mutant has defects in chloroplast protein translation and rRNA processing. Similar in sequence to pseudouridine synthase proteins.; SUPPRESSOR OF VARIEGATION 1 (SVR1); CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), RNA-binding S4 (InterPro:IPR002942), Pseudouridine synthase, RsuA and RluB/E/F, conserved site (InterPro:IPR018496); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT3G43340.1); Has 12713 Blast hits to 12709 proteins in 2415 species: Archae - 0; Bacteria - 10639; Metazoa - 2; Fungi - 2; Plants - 70; Viruses - 0; Other Eukaryotes - 2000 (source: NCBI BLink). & (reliability: 512.0) &  (original description: no original description)","protein_coding"
"Kfl00656_0100","kfl00656_0100_v1.1","Klebsormidium nitens","(at5g05450 : 584.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G71370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p46942|db10_nicsy : 191.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 1168.0) &  (original description: no original description)","protein_coding"
"Kfl00672_0060","kfl00672_0060_v1.1","Klebsormidium nitens","(at1g09760 : 232.0) U2 small nuclear ribonucleoprotein A (U2A'); INVOLVED IN: nuclear mRNA splicing, via spliceosome, response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U2A'/phosphoprotein 32 family A, C-terminal (InterPro:IPR003603); Has 8109 Blast hits to 6297 proteins in 450 species: Archae - 0; Bacteria - 3635; Metazoa - 3194; Fungi - 303; Plants - 219; Viruses - 2; Other Eukaryotes - 756 (source: NCBI BLink). & (reliability: 464.0) &  (original description: no original description)","protein_coding"
"Kfl00689_0040","kfl00689_0040_v1.1","Klebsormidium nitens","(at3g12140 : 100.0) Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein; CONTAINS InterPro DOMAIN/s: ENT (InterPro:IPR005491), Tudor-like, plant (InterPro:IPR014002); BEST Arabidopsis thaliana protein match is: Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (TAIR:AT5G06780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 200.0) &  (original description: no original description)","protein_coding"
"Kfl00706_0010","kfl00706_0010_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00721_0040","kfl00721_0040_v1.1","Klebsormidium nitens","(at1g67490 : 736.0) Encodes an alpha-glucosidase I enzyme that catalyzes the first step in N-linked glycan processing. Localized to the endoplasmic reticulum (ER).; glucosidase 1 (GCS1); FUNCTIONS IN: alpha-glucosidase activity; INVOLVED IN: root epidermal cell differentiation, epidermal cell differentiation; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 63 (InterPro:IPR004888), Six-hairpin glycosidase-like (InterPro:IPR008928); BEST Arabidopsis thaliana protein match is: Six-hairpin glycosidases superfamily protein (TAIR:AT1G24320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1354.0) &  (original description: no original description)","protein_coding"
"Kfl00792_0050","kfl00792_0050_v1.1","Klebsormidium nitens","(at1g75560 : 140.0) zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: cold shock domain protein 1 (TAIR:AT4G36020.1); Has 19425 Blast hits to 13089 proteins in 377 species: Archae - 0; Bacteria - 14; Metazoa - 2237; Fungi - 1342; Plants - 858; Viruses - 14254; Other Eukaryotes - 720 (source: NCBI BLink). & (reliability: 280.0) &  (original description: no original description)","protein_coding"
"Kfl00958_0060","kfl00958_0060_v1.1","Klebsormidium nitens","(at5g09820 : 201.0) Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: Plastid-lipid associated protein PAP / fibrillin family protein (TAIR:AT3G26070.1); Has 405 Blast hits to 405 proteins in 80 species: Archae - 0; Bacteria - 95; Metazoa - 0; Fungi - 0; Plants - 302; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). & (q6k439|pap2_orysa : 85.1) Probable plastid-lipid-associated protein 2, chloroplast precursor (Fibrillin-like protein 2) - Oryza sativa (Rice) & (reliability: 402.0) &  (original description: no original description)","protein_coding"
"Kfl01338_0020","kfl01338_0020_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl01473_0010","kfl01473_0010_v1.1","Klebsormidium nitens","(at5g62930 : 216.0) SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Esterase, SGNH hydrolase-type, subgroup (InterPro:IPR013831), Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: SGNH hydrolase-type esterase superfamily protein (TAIR:AT5G45920.1); Has 689 Blast hits to 688 proteins in 254 species: Archae - 0; Bacteria - 229; Metazoa - 77; Fungi - 158; Plants - 171; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). & (reliability: 432.0) &  (original description: no original description)","protein_coding"
"LOC_Os01g01740","No alias","Oryza sativa","protein kinase domain containing protein, expressed","protein_coding"
"LOC_Os01g03110","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os01g06070","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os01g12180","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os01g18360","No alias","Oryza sativa","OsIAA4 - Auxin-responsive Aux/IAA gene family member, expressed","protein_coding"
"LOC_Os01g34630","No alias","Oryza sativa","retrotransposon protein, putative, Ty1-copia subclass, expressed","protein_coding"
"LOC_Os01g36600","No alias","Oryza sativa","PPR repeat domain containing protein, putative, expressed","protein_coding"
"LOC_Os01g37970","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os01g49310","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os01g50310","No alias","Oryza sativa","VIP1 protein, putative, expressed","protein_coding"
"LOC_Os01g54090","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os01g54370","No alias","Oryza sativa","dihydropyrimidinase, putative, expressed","protein_coding"
"LOC_Os01g65100","No alias","Oryza sativa","peptide transporter, putative, expressed","protein_coding"
"LOC_Os01g65650","No alias","Oryza sativa","receptor-like protein kinase HAIKU2 precursor, putative, expressed","protein_coding"
"LOC_Os01g72049","No alias","Oryza sativa","retrotransposon, putative, centromere-specific, expressed","protein_coding"
"LOC_Os01g72240","No alias","Oryza sativa","uridine 5-monophosphate synthase, putative, expressed","protein_coding"
"LOC_Os01g73160","No alias","Oryza sativa","40S ribosomal protein S10, putative, expressed","protein_coding"
"LOC_Os01g73550","No alias","Oryza sativa","mitochondrial-processing peptidase subunit alpha, mitochondrial precursor, putative, expressed","protein_coding"
"LOC_Os01g74030","No alias","Oryza sativa","pumilio-family RNA binding protein, putative, expressed","protein_coding"
"LOC_Os02g01350","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os02g02800","No alias","Oryza sativa","AGAP001222-PA, putative, expressed","protein_coding"
"LOC_Os02g16690","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os02g21220","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os02g29440","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os02g35310","No alias","Oryza sativa","12-oxophytodienoate reductase, putative, expressed","protein_coding"
"LOC_Os02g35880","No alias","Oryza sativa","salt tolerant protein, putative, expressed","protein_coding"
"LOC_Os02g36810","No alias","Oryza sativa","cytokinin-O-glucosyltransferase 2, putative, expressed","protein_coding"
"LOC_Os02g37020","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os02g37870","No alias","Oryza sativa","Brix domain containing protein, putative, expressed","protein_coding"
"LOC_Os02g38120","No alias","Oryza sativa","BTBN3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 domain, expressed","protein_coding"
"LOC_Os02g48690","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os02g53380","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os03g02200","No alias","Oryza sativa","thymidine kinase, putative, expressed","protein_coding"
"LOC_Os03g02530","No alias","Oryza sativa","OsRhmbd7 - Putative Rhomboid homologue, expressed","protein_coding"
"LOC_Os03g08140","No alias","Oryza sativa","tubulin--tyrosine ligase-like protein 12, putative, expressed","protein_coding"
"LOC_Os03g11510","No alias","Oryza sativa","mitochondrial carrier protein, putative, expressed","protein_coding"
"LOC_Os03g11690","No alias","Oryza sativa","PPR repeat containing protein, expressed","protein_coding"
"LOC_Os03g21210","No alias","Oryza sativa","endoglucanase, putative, expressed","protein_coding"
"LOC_Os03g36930","No alias","Oryza sativa","DEAD-box ATP-dependent RNA helicase, putative, expressed","protein_coding"
"LOC_Os03g43020","No alias","Oryza sativa","prefoldin subunit, putative, expressed","protein_coding"
"LOC_Os03g50510","No alias","Oryza sativa","threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed","protein_coding"
"LOC_Os03g55920","No alias","Oryza sativa","hydrolase, acting on carbon-nitrogen, putative, expressed","protein_coding"
"LOC_Os03g56070","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os03g56610","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os03g59020","No alias","Oryza sativa","T-complex protein, putative, expressed","protein_coding"
"LOC_Os03g61120","No alias","Oryza sativa","anthranilate synthase component I-1, chloroplast precursor, putative, expressed","protein_coding"
"LOC_Os03g61340","No alias","Oryza sativa","hydrolase, alpha/beta fold family domain containing protein, expressed","protein_coding"
"LOC_Os03g63400","No alias","Oryza sativa","transcription factor BTF3, putative, expressed","protein_coding"
"LOC_Os04g10490","No alias","Oryza sativa","hypothetical protein","protein_coding"
"LOC_Os04g33360","No alias","Oryza sativa","gibberellin 2-beta-dioxygenase 7, putative, expressed","protein_coding"
"LOC_Os04g33400","No alias","Oryza sativa","OsFBLD2 - F-box, LRR and FBD domain containing protein, expressed","protein_coding"
"LOC_Os04g33490","No alias","Oryza sativa","neutral/alkaline invertase, putative, expressed","protein_coding"
"LOC_Os04g35650","No alias","Oryza sativa","pentatricopeptide, putative, expressed","protein_coding"
"LOC_Os04g42550","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os04g51280","No alias","Oryza sativa","DAG protein, chloroplast precursor, putative, expressed","protein_coding"
"LOC_Os04g53770","No alias","Oryza sativa","SDA1, putative, expressed","protein_coding"
"LOC_Os04g54350","No alias","Oryza sativa","SPRY-domain containing protein, putative, expressed","protein_coding"
"LOC_Os04g55840","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os04g57950","No alias","Oryza sativa","dihydroorotate dihydrogenase protein, putative, expressed","protein_coding"
"LOC_Os05g03490","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os05g03960","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os05g04000","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os05g04160","No alias","Oryza sativa","pentatricopeptide containing protein, putative, expressed","protein_coding"
"LOC_Os05g08010","No alias","Oryza sativa","OsFBX161 - F-box domain containing protein, expressed","protein_coding"
"LOC_Os05g08360","No alias","Oryza sativa","rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed","protein_coding"
"LOC_Os05g19470","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os05g32150","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os05g33380","No alias","Oryza sativa","fructose-bisphospate aldolase isozyme, putative, expressed","protein_coding"
"LOC_Os05g37520","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os05g40170","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os05g46770","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os05g48410","No alias","Oryza sativa","50S ribosomal protein L21, chloroplast precursor, putative, expressed","protein_coding"
"LOC_Os05g50654","No alias","Oryza sativa","mitochondrial import receptor subunit TOM7-1, putative, expressed","protein_coding"
"LOC_Os06g02510","No alias","Oryza sativa","ribosomal protein L13, putative, expressed","protein_coding"
"LOC_Os06g03520","No alias","Oryza sativa","DUF581 domain containing protein, expressed","protein_coding"
"LOC_Os06g04220","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os06g04870","No alias","Oryza sativa","homeobox associated leucine zipper, putative, expressed","protein_coding"
"LOC_Os06g06410","No alias","Oryza sativa","rRNA-processing protein FCF, putative, expressed","protein_coding"
"LOC_Os06g07210","No alias","Oryza sativa","ribonucleoside-diphosphate reductase large subunit, putative, expressed","protein_coding"
"LOC_Os06g08210","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os06g11060","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os06g13710","No alias","Oryza sativa","glycosyltransferase, putative, expressed","protein_coding"
"LOC_Os06g18900","No alias","Oryza sativa","cadmium tolerance factor, putative, expressed","protein_coding"
"LOC_Os06g19640","No alias","Oryza sativa","39S ribosomal protein L46, mitochondrial precursor, putative, expressed","protein_coding"
"LOC_Os06g20920","No alias","Oryza sativa","SAM dependent carboxyl methyltransferase, putative, expressed","protein_coding"
"LOC_Os06g22900","No alias","Oryza sativa","transposon protein, putative, CACTA, En/Spm sub-class, expressed","protein_coding"
"LOC_Os06g23760","No alias","Oryza sativa","acyl-CoA oxidase, putative, expressed","protein_coding"
"LOC_Os06g30470","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os06g33390","No alias","Oryza sativa","avr9/Cf-9 rapidly elicited protein 194, putative, expressed","protein_coding"
"LOC_Os06g38594","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os06g40440","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os06g43250","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os06g45300","No alias","Oryza sativa","serine/threonine-protein kinase HT1, putative, expressed","protein_coding"
"LOC_Os06g48250","No alias","Oryza sativa","ATPase, putative, expressed","protein_coding"
"LOC_Os07g07490","No alias","Oryza sativa","YT521-B, putative, expressed","protein_coding"
"LOC_Os07g08340","No alias","Oryza sativa","pyruvate kinase, putative, expressed","protein_coding"
"LOC_Os07g16760","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os07g28970","No alias","Oryza sativa","retrotransposon, putative, centromere-specific, expressed","protein_coding"
"LOC_Os07g29320","No alias","Oryza sativa","rRNA-processing protein EBP2, putative, expressed","protein_coding"
"LOC_Os07g40340","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os07g40750","No alias","Oryza sativa","PPR repeat domain containing protein, putative, expressed","protein_coding"
"LOC_Os07g41180","No alias","Oryza sativa","RNA-binding protein-like, putative, expressed","protein_coding"
"LOC_Os07g42080","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os07g42420","No alias","Oryza sativa","3-oxoacyl-synthase, putative, expressed","protein_coding"
"LOC_Os07g46170","No alias","Oryza sativa","OsRhmbd13 - Putative Rhomboid homologue, expressed","protein_coding"
"LOC_Os08g01650","No alias","Oryza sativa","Rf1, mitochondrial precursor, putative, expressed","protein_coding"
"LOC_Os08g02840","No alias","Oryza sativa","ribosome, putative, expressed","protein_coding"
"LOC_Os08g07840","No alias","Oryza sativa","PolI-like DNA polymerase, putative, expressed","protein_coding"
"LOC_Os08g08230","No alias","Oryza sativa","kinesin-like protein, identical, putative, expressed","protein_coding"
"LOC_Os08g09350","No alias","Oryza sativa","gar2, putative, expressed","protein_coding"
"LOC_Os08g15600","No alias","Oryza sativa","stomatin-like protein 2, putative, expressed","protein_coding"
"LOC_Os08g23730","No alias","Oryza sativa","class I glutamine amidotransferase, putative, expressed","protein_coding"
"LOC_Os08g25900","No alias","Oryza sativa","PsbP, putative, expressed","protein_coding"
"LOC_Os08g28570","No alias","Oryza sativa","resistance protein, putative, expressed","protein_coding"
"LOC_Os08g28870","No alias","Oryza sativa","receptor-like protein kinase 5 precursor, putative, expressed","protein_coding"
"LOC_Os08g45130","No alias","Oryza sativa","histone-lysine N-methyltransferase, putative, expressed","protein_coding"
"LOC_Os08g45140","No alias","Oryza sativa","OsGrx_S12 - glutaredoxin subgroup I, expressed","protein_coding"
"LOC_Os09g02140","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os09g21010","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os09g24680","No alias","Oryza sativa","pentatricopeptide, putative, expressed","protein_coding"
"LOC_Os09g31380","No alias","Oryza sativa","jmjC domain-containing protein 5, putative, expressed","protein_coding"
"LOC_Os09g34090","No alias","Oryza sativa","sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed","protein_coding"
"LOC_Os09g36600","No alias","Oryza sativa","nodulin, putative, expressed","protein_coding"
"LOC_Os09g38890","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os10g06720","No alias","Oryza sativa","aldose 1-epimerase, putative, expressed","protein_coding"
"LOC_Os10g06780","No alias","Oryza sativa","protein kinase domain containing protein, expressed","protein_coding"
"LOC_Os10g17800","No alias","Oryza sativa","retrotransposon protein, putative, unclassified, expressed","protein_coding"
"LOC_Os10g25420","No alias","Oryza sativa","GDSL-like lipase/acylhydrolase, putative, expressed","protein_coding"
"LOC_Os10g28840","No alias","Oryza sativa","speckle-type POZ protein, putative, expressed","protein_coding"
"LOC_Os10g30640","No alias","Oryza sativa","translin, putative, expressed","protein_coding"
"LOC_Os10g40960","No alias","Oryza sativa","oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed","protein_coding"
"LOC_Os10g42040","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os11g01420","No alias","Oryza sativa","ribosomal protein L10, putative, expressed","protein_coding"
"LOC_Os11g03590","No alias","Oryza sativa","EMB1379, putative, expressed","protein_coding"
"LOC_Os11g06750","No alias","Oryza sativa","ribosomal protein L3, putative, expressed","protein_coding"
"LOC_Os11g09670","No alias","Oryza sativa","OsFBX409 - F-box domain containing protein, expressed","protein_coding"
"LOC_Os11g10330","No alias","Oryza sativa","OsFBX416 - F-box domain containing protein, expressed","protein_coding"
"LOC_Os11g10340","No alias","Oryza sativa","OsFBX417 - F-box domain containing protein, expressed","protein_coding"
"LOC_Os11g10520","No alias","Oryza sativa","dehydrogenase, putative, expressed","protein_coding"
"LOC_Os11g11500","No alias","Oryza sativa","serpin domain containing protein, putative, expressed","protein_coding"
"LOC_Os11g31530","No alias","Oryza sativa","BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed","protein_coding"
"LOC_Os11g33240","No alias","Oryza sativa","citrate synthase, putative, expressed","protein_coding"
"LOC_Os11g36030","No alias","Oryza sativa","protein binding protein, putative, expressed","protein_coding"
"LOC_Os11g39370","No alias","Oryza sativa","BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed","protein_coding"
"LOC_Os11g42200","No alias","Oryza sativa","laccase precursor protein, putative, expressed","protein_coding"
"LOC_Os12g01230","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os12g01574","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os12g04480","No alias","Oryza sativa","cytochrome P450, putative, expressed","protein_coding"
"LOC_Os12g08180","No alias","Oryza sativa","receptor-like protein kinase 2 precursor, putative, expressed","protein_coding"
"LOC_Os12g08800","No alias","Oryza sativa","las1-like family protein, putative, expressed","protein_coding"
"LOC_Os12g12570","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os12g12730","No alias","Oryza sativa","OsCML28 - Calmodulin-related calcium sensor protein, expressed","protein_coding"
"LOC_Os12g14110","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os12g21798","No alias","Oryza sativa","40S ribosomal protein S3a, putative, expressed","protein_coding"
"LOC_Os12g39630","No alias","Oryza sativa","CAMK_CAMK_like.49 - CAMK includes calcium/calmodulin depedent protein kinases, expressed","protein_coding"
"LOC_Os12g40160","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os12g42150","No alias","Oryza sativa","WD domain, G-beta repeat domain containing protein, expressed","protein_coding"
"MA_10428235g0020","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding"
"MA_10431973g0010","No alias","Picea abies","(at5g36930 : 88.2) Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G17680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 176.4) &  (original description: no original description)","protein_coding"
"MA_10434796g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding"
"MA_10434796g0020","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding"
"MA_10435021g0010","No alias","Picea abies","(at1g69550 : 243.0) disease resistance protein (TIR-NBS-LRR class); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G11250.1); Has 8455 Blast hits to 8197 proteins in 261 species: Archae - 0; Bacteria - 113; Metazoa - 3; Fungi - 4; Plants - 8303; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). & (reliability: 486.0) &  (original description: no original description)","protein_coding"
"MA_10435629g0010","No alias","Picea abies","(at1g60770 : 266.0) Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G02370.1); Has 19797 Blast hits to 7926 proteins in 238 species: Archae - 2; Bacteria - 46; Metazoa - 98; Fungi - 130; Plants - 18960; Viruses - 0; Other Eukaryotes - 561 (source: NCBI BLink). & (reliability: 532.0) &  (original description: no original description)","protein_coding"
"MA_10436919g0010","No alias","Picea abies","(at5g56180 : 179.0) encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. Member of nuclear ARP family of genes.; actin-related protein 8 (ARP8); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin 9 (TAIR:AT2G42090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 358.0) &  (original description: no original description)","protein_coding"
"MA_10448g0010","No alias","Picea abies","(at2g17670 : 253.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G53700.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q76c99|rf1_orysa : 156.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 506.0) &  (original description: no original description)","protein_coding"
"MA_107659g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding"
"MA_137928g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding"
"MA_20283g0010","No alias","Picea abies","(at5g56750 : 449.0) N-MYC downregulated-like 1 (NDL1); CONTAINS InterPro DOMAIN/s: Pollen specific protein SF21 (InterPro:IPR015511), Ndr (InterPro:IPR004142); BEST Arabidopsis thaliana protein match is: N-MYC downregulated-like 3 (TAIR:AT2G19620.1); Has 776 Blast hits to 775 proteins in 111 species: Archae - 2; Bacteria - 48; Metazoa - 563; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). & (o23969|sf21_helan : 391.0) Pollen-specific protein SF21 - Helianthus annuus (Common sunflower) & (reliability: 880.0) &  (original description: no original description)","protein_coding"
"MA_263716g0010","No alias","Picea abies","(at1g27170 : 168.0) transmembrane receptors;ATP binding; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT1G27180.1); Has 88149 Blast hits to 36022 proteins in 1268 species: Archae - 44; Bacteria - 5525; Metazoa - 17765; Fungi - 1406; Plants - 58458; Viruses - 8; Other Eukaryotes - 4943 (source: NCBI BLink). & (reliability: 336.0) &  (original description: no original description)","protein_coding"
"MA_3018947g0010","No alias","Picea abies","(at1g69550 : 95.5) disease resistance protein (TIR-NBS-LRR class); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G11250.1); Has 8455 Blast hits to 8197 proteins in 261 species: Archae - 0; Bacteria - 113; Metazoa - 3; Fungi - 4; Plants - 8303; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). & (reliability: 191.0) &  (original description: no original description)","protein_coding"
"MA_31254g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding"
"MA_4923858g0010","No alias","Picea abies","(at3g44480 : 87.4) Encodes a TIR-NB-LRR R-protein RPP1 that confers resistance to Peronospora parasitica (downy mildew).; recognition of peronospora parasitica 1 (RPP1); CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT3G44630.1); Has 46378 Blast hits to 25771 proteins in 899 species: Archae - 34; Bacteria - 2351; Metazoa - 4746; Fungi - 347; Plants - 36039; Viruses - 14; Other Eukaryotes - 2847 (source: NCBI BLink). & (reliability: 169.4) &  (original description: no original description)","protein_coding"
"MA_5183807g0010","No alias","Picea abies","(at4g10780 : 85.5) LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response, apoptosis; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 171.0) &  (original description: no original description)","protein_coding"
"MA_540053g0010","No alias","Picea abies","(at4g25540 : 186.0) encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G).; homolog of DNA mismatch repair protein MSH3 (MSH3); CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695); BEST Arabidopsis thaliana protein match is: MUTS homolog 6 (TAIR:AT4G02070.2); Has 14547 Blast hits to 13713 proteins in 2703 species: Archae - 153; Bacteria - 9793; Metazoa - 705; Fungi - 864; Plants - 451; Viruses - 3; Other Eukaryotes - 2578 (source: NCBI BLink). & (q9xgc9|msh2_maize : 95.9) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 372.0) &  (original description: no original description)","protein_coding"
"MA_708206g0010","No alias","Picea abies","(at1g60220 : 80.5) Encodes a deSUMOylating enzyme. In vitro it has both peptidase activity and isopeptidase activity: it can cleave C-terminal residues from SUMO to activate it for attachment to a target protein and it can also act on the isopeptide bond between SUMO and another protein. sGFP:OTS1 protein accumulates in the nucleus. Double mutant analysis with ULP1C/OTS2 indicates that these genes are involved in salt stress responses and flowering time regulation. Over-expression of 35S:OTS1 increases salt tolerance and reduces the level of SUMO-conjugated proteins. OTS1 transcript levels do not appear to change in response to salt, but, salt stress reduces the level of OTS1 protein in a proteasome-dependent manner.; UB-like protease 1D (ULP1D); CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G10570.2); Has 2556 Blast hits to 2339 proteins in 246 species: Archae - 0; Bacteria - 12; Metazoa - 1276; Fungi - 441; Plants - 318; Viruses - 13; Other Eukaryotes - 496 (source: NCBI BLink). & (reliability: 161.0) &  (original description: no original description)","protein_coding"
"MA_78481g0010","No alias","Picea abies","(at1g63130 : 360.0) Transacting siRNA generating locus. Its derived siR9as targets AT1G62930 for cleavage. Itself is targeted by TAS2-derived ta-siR2140 for cleavage.; Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62910.1); Has 68218 Blast hits to 15140 proteins in 318 species: Archae - 7; Bacteria - 75; Metazoa - 1255; Fungi - 1382; Plants - 62771; Viruses - 0; Other Eukaryotes - 2728 (source: NCBI BLink). & (q76c99|rf1_orysa : 345.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 656.0) &  (original description: no original description)","protein_coding"
"MA_955912g0010","No alias","Picea abies","(at2g37230 : 512.0) Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G02060.1); Has 41954 Blast hits to 13568 proteins in 300 species: Archae - 4; Bacteria - 36; Metazoa - 406; Fungi - 591; Plants - 39794; Viruses - 0; Other Eukaryotes - 1123 (source: NCBI BLink). & (q76c99|rf1_orysa : 224.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1024.0) &  (original description: no original description)","protein_coding"
"MA_96561g0010","No alias","Picea abies","(at4g27000 : 129.0) ATRBP45C; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 258.0) &  (original description: no original description)","protein_coding"
"MA_97705g0010","No alias","Picea abies","(at4g33300 : 402.0) ADR1-like 1 (ADR1-L1); FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Powdery mildew resistance protein,  RPW8 domain (InterPro:IPR008808), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: ADR1-like 2 (TAIR:AT5G04720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 762.0) &  (original description: no original description)","protein_coding"
"Mp1g01380.1","No alias","Marchantia polymorpha","GTP-binding protein ERG OS=Arabidopsis thaliana (sp|o82653|erg_arath : 306.0)","protein_coding"
"Mp1g03220.1","No alias","Marchantia polymorpha","Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis thaliana (sp|q9fps2|ubp25_arath : 331.0)","protein_coding"
"Mp1g06090.1","No alias","Marchantia polymorpha","fatty acid export protein (FAX). fatty acid transporter (FAX)","protein_coding"
"Mp1g10260.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp1g12620.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp1g15190.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp1g16500.1","No alias","Marchantia polymorpha","ER lumen protein-retaining receptor A OS=Arabidopsis thaliana (sp|p35402|erd2a_arath : 97.8)","protein_coding"
"Mp1g17690.1","No alias","Marchantia polymorpha","component PsbR of PS-II complex","protein_coding"
"Mp2g02160.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp2g04250.1","No alias","Marchantia polymorpha","nucleotide sugar transporter (UAfT)","protein_coding"
"Mp2g09560.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp2g11050.1","No alias","Marchantia polymorpha","SEC22-type R-type SNARE longin protein","protein_coding"
"Mp2g14330.1","No alias","Marchantia polymorpha","DNA topoisomerase 6 subunit B OS=Arabidopsis thaliana (sp|q9c5v6|top6b_arath : 913.0)","protein_coding"
"Mp2g19800.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp2g22460.1","No alias","Marchantia polymorpha","cardiolipin synthase","protein_coding"
"Mp3g00530.1","No alias","Marchantia polymorpha","subunit C of ribonuclease H2 complex","protein_coding"
"Mp3g07380.1","No alias","Marchantia polymorpha","type-II inositol-polyphosphate 5-phosphatase","protein_coding"
"Mp3g09240.1","No alias","Marchantia polymorpha","anion transporter (NRT1/PTR)","protein_coding"
"Mp3g14370.1","No alias","Marchantia polymorpha","Exonuclease V, chloroplastic OS=Arabidopsis thaliana (sp|q9fkk6|exo5_arath : 238.0)","protein_coding"
"Mp3g16880.1","No alias","Marchantia polymorpha","Vesicle-associated protein 4-1 OS=Arabidopsis thaliana (sp|q1ece0|vap41_arath : 177.0)","protein_coding"
"Mp3g17840.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp4g00940.1","No alias","Marchantia polymorpha","subunit 12 of RNA polymerase","protein_coding"
"Mp4g04230.1","No alias","Marchantia polymorpha","ARF-GTPase","protein_coding"
"Mp4g05080.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp4g09660.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp4g10860.1","No alias","Marchantia polymorpha","phospholipase A1 (PC-PLA1)","protein_coding"
"Mp4g13340.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp4g13540.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp4g15330.1","No alias","Marchantia polymorpha","component SYF1/MAC9 of non-snRNP MOS4-associated complex","protein_coding"
"Mp4g17960.1","No alias","Marchantia polymorpha","CDP-diacylglycerol synthase","protein_coding"
"Mp5g02360.1","No alias","Marchantia polymorpha","component RPP38/POP3 of RNA-dependent RNase P complex","protein_coding"
"Mp5g07630.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp5g12390.1","No alias","Marchantia polymorpha","solute transporter (UmamiT)","protein_coding"
"Mp6g01880.1","No alias","Marchantia polymorpha","SLX9 pre-rRNA cleavage factor involved in ITS1 rRNA removal","protein_coding"
"Mp6g12000.1","No alias","Marchantia polymorpha","DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sativa subsp. japonica (sp|q0e2z7|rh41_orysj : 478.0)","protein_coding"
"Mp6g14750.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp7g06390.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp7g08780.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp7g14210.1","No alias","Marchantia polymorpha","brassinosteroid co-receptor protein kinase (BAK). protein kinase (LRR-II)","protein_coding"
"Mp7g17210.1","No alias","Marchantia polymorpha","UDP-D-glucuronic acid 4-epimerase","protein_coding"
"Mp7g18520.1","No alias","Marchantia polymorpha","SSU processome assembly factor (UTP6)","protein_coding"
"Mp8g06600.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp8g10000.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp8g10750.1","No alias","Marchantia polymorpha","F-box protein At1g67340 OS=Arabidopsis thaliana (sp|q9fyf9|fb76_arath : 199.0)","protein_coding"
"Mp8g13150.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp8g13930.1","No alias","Marchantia polymorpha","UBP1-associated proteins 1C OS=Arabidopsis thaliana (sp|o64571|uba1c_arath : 94.7)","protein_coding"
"Potri.007G040000","No alias","Populus trichocarpa","Function unknown","protein_coding"
"Potri.009G097000","No alias","Populus trichocarpa","Function unknown","protein_coding"
"Pp1s101_102V6","No alias","Physcomitrella patens","F3L24.8; KOW domain-containing transcription factor family protein [Arabidopsis thaliana]","protein_coding"
"Pp1s106_65V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s10_119V6","No alias","Physcomitrella patens","glutaredoxin 2","protein_coding"
"Pp1s121_170V6","No alias","Physcomitrella patens","protein arginine n-","protein_coding"
"Pp1s121_19V6","No alias","Physcomitrella patens","ubiquitin specific peptidase 16","protein_coding"
"Pp1s123_14V6","No alias","Physcomitrella patens","upf2 regulator of nonsense transcripts homolog","protein_coding"
"Pp1s127_20V6","No alias","Physcomitrella patens","K15M2.4; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s134_26V6","No alias","Physcomitrella patens","small nuclear ribonucleoprotein polypeptide a","protein_coding"
"Pp1s138_25V6","No alias","Physcomitrella patens","subfamilymember 9","protein_coding"
"Pp1s13_19V6","No alias","Physcomitrella patens","brix domain containing 1","protein_coding"
"Pp1s13_48V6","No alias","Physcomitrella patens","plastocyanin-like domain-containing protein","protein_coding"
"Pp1s145_84V6","No alias","Physcomitrella patens","flavin-containing amine oxidase domain-containing","protein_coding"
"Pp1s147_87V6","No alias","Physcomitrella patens","T5A14.6; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s148_71V6","No alias","Physcomitrella patens","speckle-type poz","protein_coding"
"Pp1s15_233V6","No alias","Physcomitrella patens","-dimethylguanosine trna methyltransferase","protein_coding"
"Pp1s15_279V6","No alias","Physcomitrella patens","casein kinase ii subunit beta-4","protein_coding"
"Pp1s162_1V6","No alias","Physcomitrella patens","T1E3.70; aspartyl aminopeptidase -related protein [EC:3.4.11.21] [Arabidopsis thaliana]","protein_coding"
"Pp1s167_66V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s168_77V6","No alias","Physcomitrella patens","p21 c-terminal-binding protein (alternative splicing products)","protein_coding"
"Pp1s169_131V6","No alias","Physcomitrella patens","dna-directed rna polymerase i","protein_coding"
"Pp1s171_27V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s175_56V6","No alias","Physcomitrella patens","F7O18.3; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s177_5V6","No alias","Physcomitrella patens","loc398434 protein","protein_coding"
"Pp1s180_118V6","No alias","Physcomitrella patens","FCAALL.334; tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana]","protein_coding"
"Pp1s183_39V6","No alias","Physcomitrella patens","splicing arginine serine-rich 4","protein_coding"
"Pp1s189_2V6","No alias","Physcomitrella patens","glutamic acid and leucine rich protein 1","protein_coding"
"Pp1s189_85V6","No alias","Physcomitrella patens","cyclic nucleotide-gated ion","protein_coding"
"Pp1s194_125V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s19_57V6","No alias","Physcomitrella patens","wd repeat domain 18","protein_coding"
"Pp1s201_110V6","No alias","Physcomitrella patens","mitochondrial protein translocase family","protein_coding"
"Pp1s203_68V6","No alias","Physcomitrella patens","mixed-lineage leukemia","protein_coding"
"Pp1s204_50V6","No alias","Physcomitrella patens","gtp-binding protein","protein_coding"
"Pp1s207_28V6","No alias","Physcomitrella patens","T5I8.3; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s207_71V6","No alias","Physcomitrella patens","K2A18.16; protein phosphatase 2C-related protein [Arabidopsis thaliana]","protein_coding"
"Pp1s213_14V6","No alias","Physcomitrella patens","MGH6.4; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s218_88V6","No alias","Physcomitrella patens","multi-sensor hybrid histidine kinase","protein_coding"
"Pp1s223_42V6","No alias","Physcomitrella patens","thymidylate kinase family protein","protein_coding"
"Pp1s22_229V6","No alias","Physcomitrella patens","nucleolar protein expressed","protein_coding"
"Pp1s246_3V6","No alias","Physcomitrella patens","aldose reductase","protein_coding"
"Pp1s255_12V6","No alias","Physcomitrella patens","T26I12.220; RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]","protein_coding"
"Pp1s263_19V6","No alias","Physcomitrella patens","kiaa0020 protein","protein_coding"
"Pp1s282_8V6","No alias","Physcomitrella patens","T20K24.14; tRNA-splicing endonuclease positive effector-related [Arabidopsis thaliana]","protein_coding"
"Pp1s30_367V6","No alias","Physcomitrella patens","Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 (Histone H3-K9 methyltransferase 6) (H3-K9-HMTase 6) (Suppressor of variegation 3-9 homolog protein 6) (Su(var)3-9 homolog protein 6) (Protein SET DOMAIN GROUP 23) [Arabidopsis thaliana]","protein_coding"
"Pp1s315_24V6","No alias","Physcomitrella patens","signal recognition particle 19 kda protein","protein_coding"
"Pp1s31_161V6","No alias","Physcomitrella patens","F14C21.51; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s32_97V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s338_40V6","No alias","Physcomitrella patens","dna-directed rna polymerase i largest","protein_coding"
"Pp1s371_24V6","No alias","Physcomitrella patens","F26K10.90; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s37_119V6","No alias","Physcomitrella patens","u3 snornp-associated-like protein","protein_coding"
"Pp1s37_82V6","No alias","Physcomitrella patens","set and mynd domain containing 5","protein_coding"
"Pp1s385_25V6","No alias","Physcomitrella patens","Light-sensor Protein kinase [Includes: Phytochrome; Protein kinase ] [Ceratodon purpureus]","protein_coding"
"Pp1s3_180V6","No alias","Physcomitrella patens","MXC20.28; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s408_31V6","No alias","Physcomitrella patens","T8O11.19; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s41_237V6","No alias","Physcomitrella patens","hepatocellular carcinoma-associated antigen 66","protein_coding"
"Pp1s438_23V6","No alias","Physcomitrella patens","cg9383-pa","protein_coding"
"Pp1s444_11V6","No alias","Physcomitrella patens","polyphosphate kinase","protein_coding"
"Pp1s45_160V6","No alias","Physcomitrella patens","rna exonuclease","protein_coding"
"Pp1s47_85V6","No alias","Physcomitrella patens","T15N1.10; pescadillo - like protein [Arabidopsis thaliana]","protein_coding"
"Pp1s52_104V6","No alias","Physcomitrella patens","cytoplasmic dynein light","protein_coding"
"Pp1s52_141V6","No alias","Physcomitrella patens","charged multivesicular body protein 2a","protein_coding"
"Pp1s54_68V6","No alias","Physcomitrella patens","nuclear fragile x mental retardation protein interacting protein 1","protein_coding"
"Pp1s5_110V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s67_76V6","No alias","Physcomitrella patens","T19F6.160; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s68_122V6","No alias","Physcomitrella patens","nad-dependent deacetylase sirtuin-5","protein_coding"
"Pp1s6_426V6","No alias","Physcomitrella patens","60s ribosomal protein l35","protein_coding"
"Pp1s71_86V6","No alias","Physcomitrella patens","AFR357Wp; syntenic homolog of Saccharomyces cerevisiae YEL036C (ANP1) [KO:K05533] [Eremothecium gossypii]","protein_coding"
"Pp1s79_108V6","No alias","Physcomitrella patens","contains ESTs D15403(C0585),C98080(C0585) unknown protein [Oryza sativa (japonica cultivar-group)]","protein_coding"
"Pp1s7_96V6","No alias","Physcomitrella patens","pre-rrna processing protein","protein_coding"
"Pp1s83_148V6","No alias","Physcomitrella patens","arsenite inducuble rna associated protein aip-","protein_coding"
"Pp1s83_162V6","No alias","Physcomitrella patens","zinc-finger protein zpr1","protein_coding"
"Pp1s89_88V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s8_147V6","No alias","Physcomitrella patens","ccaat enhancer binding protein zeta","protein_coding"
"Pp1s90_26V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s95_121V6","No alias","Physcomitrella patens","nucleic acid binding","protein_coding"
"Pp1s97_57V6","No alias","Physcomitrella patens","glp7 gene for putative germin-like protein GLP7a","protein_coding"
"Pp1s9_352V6","No alias","Physcomitrella patens","vasohibin 1","protein_coding"
"Pp1s9_477V6","No alias","Physcomitrella patens","fanconi complementation group m","protein_coding"
"Pp1s9_56V6","No alias","Physcomitrella patens","F19F24.9; protein kinase family protein [Arabidopsis thaliana]","protein_coding"
"PSME_00000133-RA","No alias","Pseudotsuga menziesii","(at1g71350 : 684.0) eukaryotic translation initiation factor SUI1 family protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Translation initiation factor SUI1 (InterPro:IPR001950), SWIB/MDM2 domain (InterPro:IPR003121), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (TAIR:AT1G09150.1); Has 1013 Blast hits to 993 proteins in 255 species: Archae - 62; Bacteria - 0; Metazoa - 354; Fungi - 333; Plants - 100; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink). & (reliability: 1368.0) &  (original description: no original description)","protein_coding"
"PSME_00001596-RA","No alias","Pseudotsuga menziesii","(at5g42950 : 648.0) GYF domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: GYF domain-containing protein (TAIR:AT1G24300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1296.0) &  (original description: no original description)","protein_coding"
"PSME_00002622-RA","No alias","Pseudotsuga menziesii","(at2g20560 : 450.0) DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G28480.1); Has 27936 Blast hits to 27733 proteins in 3449 species: Archae - 187; Bacteria - 10270; Metazoa - 4781; Fungi - 2609; Plants - 2869; Viruses - 17; Other Eukaryotes - 7203 (source: NCBI BLink). & (q04960|dnjh_cucsa : 154.0) DnaJ protein homolog (DNAJ-1) - Cucumis sativus (Cucumber) & (reliability: 900.0) &  (original description: no original description)","protein_coding"
"PSME_00017188-RA","No alias","Pseudotsuga menziesii","(at3g51790 : 229.0) putative transmembrane protein G1p (AtG1) mRNA, complete; transmembrane protein G1P-related 1 (TG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cytochrome complex assembly, protein-heme linkage; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CcmE/CycJ protein (InterPro:IPR004329), Nucleic acid-binding, OB-fold (InterPro:IPR012340); Has 3203 Blast hits to 3203 proteins in 811 species: Archae - 0; Bacteria - 1840; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 1341 (source: NCBI BLink). & (reliability: 458.0) &  (original description: no original description)","protein_coding"
"PSME_00020272-RA","No alias","Pseudotsuga menziesii","(at4g12750 : 470.0) Homeodomain-like transcriptional regulator; FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), DDT domain (InterPro:IPR004022), DDT domain, subgroup (InterPro:IPR018500), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like transcriptional regulator (TAIR:AT5G44180.1); Has 164 Blast hits to 146 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 152; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). & (reliability: 940.0) &  (original description: no original description)","protein_coding"
"PSME_00025010-RA","No alias","Pseudotsuga menziesii","(at1g09620 : 1093.0) ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, leucine-tRNA ligase activity, ATP binding; INVOLVED IN: leucyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic (InterPro:IPR004493); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (I, L, M and V) family protein (TAIR:AT4G04350.1); Has 16931 Blast hits to 15894 proteins in 2953 species: Archae - 757; Bacteria - 11010; Metazoa - 639; Fungi - 488; Plants - 264; Viruses - 0; Other Eukaryotes - 3773 (source: NCBI BLink). & (reliability: 2186.0) &  (original description: no original description)","protein_coding"
"PSME_00025190-RA","No alias","Pseudotsuga menziesii","(at3g53030 : 676.0) Encodes a protein kinase SRPK4 that specifically targets Arabidopsis Ser/Arg-rich (SR) slicing factors involved in RNA metabolism.  In vitro kinase assay showed that SRPK4 phosphorylates the SR protein RSp31.; ser/arg-rich protein kinase 4 (SRPK4); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: response to oxidative stress, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G44850.1); Has 38460 Blast hits to 29477 proteins in 1034 species: Archae - 2; Bacteria - 1392; Metazoa - 15648; Fungi - 7270; Plants - 6510; Viruses - 16; Other Eukaryotes - 7622 (source: NCBI BLink). & (reliability: 1352.0) &  (original description: no original description)","protein_coding"
"PSME_00027847-RA","No alias","Pseudotsuga menziesii","(at1g19835 : 137.0) Plant protein of unknown function (DUF869); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G47900.2). & (reliability: 274.0) &  (original description: no original description)","protein_coding"
"PSME_00028110-RA","No alias","Pseudotsuga menziesii","(at1g11390 : 597.0) Protein kinase superfamily protein; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G61640.1); Has 9400 Blast hits to 9333 proteins in 1787 species: Archae - 122; Bacteria - 4339; Metazoa - 436; Fungi - 531; Plants - 684; Viruses - 14; Other Eukaryotes - 3274 (source: NCBI BLink). & (reliability: 1194.0) &  (original description: no original description)","protein_coding"
"PSME_00032035-RA","No alias","Pseudotsuga menziesii","(at1g29900 : 1016.0) carbamoyl phosphate synthetase large chain (CARB) mRNA,; carbamoyl phosphate synthetase B (CARB); FUNCTIONS IN: catalytic activity, ATP binding; INVOLVED IN: cellular response to phosphate starvation, arginine biosynthetic process; LOCATED IN: chloroplast stroma, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), MGS-like (InterPro:IPR011607), PreATP-grasp-like fold (InterPro:IPR016185), Carbamoyl phosphate synthetase, large subunit, oligomerisation (InterPro:IPR005480), Carbamoyl phosphate synthase, large subunit, glutamine-dependent (InterPro:IPR006275), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Carbamoyl phosphate synthase, large subunit (InterPro:IPR005483), Pre-ATP-grasp fold (InterPro:IPR013817); BEST Arabidopsis thaliana protein match is: acetyl-CoA carboxylase 2 (TAIR:AT1G36180.1); Has 49576 Blast hits to 29968 proteins in 5011 species: Archae - 665; Bacteria - 22536; Metazoa - 6475; Fungi - 1021; Plants - 476; Viruses - 0; Other Eukaryotes - 18403 (source: NCBI BLink). & (reliability: 2032.0) &  (original description: no original description)","protein_coding"
"PSME_00038229-RA","No alias","Pseudotsuga menziesii","(at4g28200 : 506.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). & (reliability: 1012.0) &  (original description: no original description)","protein_coding"
"PSME_00049740-RA","No alias","Pseudotsuga menziesii","(at5g20680 : 478.0) Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).; TRICHOME BIREFRINGENCE-LIKE 16; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 14 (TAIR:AT5G64020.1); Has 1636 Blast hits to 1561 proteins in 93 species: Archae - 0; Bacteria - 11; Metazoa - 58; Fungi - 27; Plants - 1333; Viruses - 7; Other Eukaryotes - 200 (source: NCBI BLink). & (reliability: 956.0) &  (original description: no original description)","protein_coding"
"PSME_00050906-RA","No alias","Pseudotsuga menziesii","(at4g33170 : 629.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G09950.1); Has 55398 Blast hits to 13784 proteins in 253 species: Archae - 0; Bacteria - 15; Metazoa - 97; Fungi - 52; Plants - 54672; Viruses - 0; Other Eukaryotes - 562 (source: NCBI BLink). & (q76c99|rf1_orysa : 113.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1258.0) &  (original description: no original description)","protein_coding"
"PSME_00052764-RA","No alias","Pseudotsuga menziesii","(p35063|h2ax_picab : 225.0) Histone H2AX - Picea abies (Norway spruce) (Picea excelsa) & (at1g54690 : 202.0) Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A.  Upon DSB formation, rapid accumulation of phosphorylated  H2AX (γ-H2AX) occurs around the break site. 
H2AX foci accumulate in early G2.  Immunolocalization studies in spread preparations of  wild-type meiocytes at G2/early leptotene revealed  the accumulation of numerous rather diffuse γ-H2AX  foci throughout the chromatin. However,  their accumulation is not contemporaneous with  that of AtSPO11-1. At 3 h post-S, no γ-H2AX  foci are detected. During the 3- to 5-h window when  AtSPO11-1 foci rapidly disappear, there is an  equally swift accumulation of γ-H2AX to a maximum  of >50 diffuse foci. The level of γH2AX then remains  constant for a further 13 h before undergoing a  gradual decrease to 10ñ20 foci in the 18- to 24-h post-S  period. By 30 h the foci have disappeared from the chromatin.; gamma histone variant H2AX (GAMMA-H2AX); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT1G08880.1); Has 3932 Blast hits to 3927 proteins in 364 species: Archae - 0; Bacteria - 0; Metazoa - 2549; Fungi - 335; Plants - 612; Viruses - 4; Other Eukaryotes - 432 (source: NCBI BLink). & (reliability: 404.0) &  (original description: no original description)","protein_coding"
"Seita.1G094800.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.1G131600.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.1G193700.1","No alias","Setaria italica ","component *(TRM11) of TRM11-TRM112 tRNA guanosine-methyltransferase complex","protein_coding"
"Seita.1G214900.1","No alias","Setaria italica ","component *(eL6) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Seita.1G297300.1","No alias","Setaria italica ","component *(eL31) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Seita.1G301700.1","No alias","Setaria italica ","rRNA methyltransferase *(NOP2)","protein_coding"
"Seita.1G341700.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G000500.1","No alias","Setaria italica ","SSU processome assembly factor *(UTP6)","protein_coding"
"Seita.2G046800.1","No alias","Setaria italica ","component *(eL15) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Seita.2G055300.1","No alias","Setaria italica ","component *(uL4) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Seita.2G109900.1","No alias","Setaria italica ","RNA editing factor *(OZ)","protein_coding"
"Seita.2G112000.1","No alias","Setaria italica ","component *(uL2) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Seita.2G232700.1","No alias","Setaria italica ","helicase component *(RVB) & helicase component *(RVB) of chromatin remodeling complex","protein_coding"
"Seita.2G260600.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G267400.1","No alias","Setaria italica ","component *(eL8) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Seita.2G278900.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G332500.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G421400.1","No alias","Setaria italica ","component *(eEF1B-beta/-delta) of eEF1B eEF1A-GDP-recycling complex","protein_coding"
"Seita.3G036800.1","No alias","Setaria italica ","EC_6.1 ligase forming carbon-oxygen bond & histidine-tRNA ligase","protein_coding"
"Seita.3G086500.1","No alias","Setaria italica ","component *(eIF3m) of eIF3 mRNA-to-PIC binding complex","protein_coding"
"Seita.3G143200.1","No alias","Setaria italica ","MRM2-type rRNA methyltransferase","protein_coding"
"Seita.3G213400.1","No alias","Setaria italica ","component *(uS12) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Seita.3G247400.1","No alias","Setaria italica ","mTERF-type transcription factor","protein_coding"
"Seita.3G347100.1","No alias","Setaria italica ","component *(NRPA7) of RNA polymerase I complex","protein_coding"
"Seita.3G392200.1","No alias","Setaria italica ","substrate adaptor of CUL4-based E3 ubiquitin ligase complex","protein_coding"
"Seita.4G003400.1","No alias","Setaria italica ","RNA helicase component *(MTR4) of TRAMP nucleolar regulation complex","protein_coding"
"Seita.4G024400.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.4G040700.1","No alias","Setaria italica ","regulatory GTPase (NOG1) of LSU processome","protein_coding"
"Seita.4G061600.1","No alias","Setaria italica ","catalytic component of PP1 phosphatase & EC_3.1 hydrolase acting on ester bond","protein_coding"
"Seita.4G277800.1","No alias","Setaria italica ","tRNA dihydrouridine synthase","protein_coding"
"Seita.5G008800.1","No alias","Setaria italica ","component *(eIF3l) of eIF3 mRNA-to-PIC binding complex","protein_coding"
"Seita.5G027300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G028100.1","No alias","Setaria italica ","component *(NDC80) of NDC80 outer kinetochore complex","protein_coding"
"Seita.5G049800.1","No alias","Setaria italica ","SSU processome assembly factor *(UTP7)","protein_coding"
"Seita.5G286100.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G310400.1","No alias","Setaria italica ","RNA editing factor *(MEF8) & RNA editing factor *(DYW2)","protein_coding"
"Seita.5G320600.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G433800.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.6G078900.1","No alias","Setaria italica ","amino acid transporter *(LHT)","protein_coding"
"Seita.6G145100.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.6G156000.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.6G224900.1","No alias","Setaria italica ","component *(eL8) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Seita.6G231500.1","No alias","Setaria italica ","component *(uL30) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Seita.6G253600.1","No alias","Setaria italica ","pre-60S ribosomal-subunit proteome export factor *(Bud20)","protein_coding"
"Seita.7G013900.1","No alias","Setaria italica ","tRNA dihydrouridine synthase","protein_coding"
"Seita.7G132500.1","No alias","Setaria italica ","fatty acid export protein *(FAX)","protein_coding"
"Seita.7G264700.1","No alias","Setaria italica ","methylated miRNA exoribonuclease *(SDN)","protein_coding"
"Seita.7G290900.1","No alias","Setaria italica ","component *(uL3) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Seita.7G320300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.7G329000.1","No alias","Setaria italica ","component *(HYL1) of DCL1-HYL1 miRNA biogenesis complex","protein_coding"
"Seita.8G046000.1","No alias","Setaria italica ","component *(uL3) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Seita.8G152900.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G006100.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G087700.1","No alias","Setaria italica ","component *(uL13) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Seita.9G178400.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G206700.1","No alias","Setaria italica ","component *(NOC2) of ribosomal-subunit proteome nuclear export complexes","protein_coding"
"Seita.9G266700.1","No alias","Setaria italica ","chlorophyllase *(CLH) & EC_3.1 hydrolase acting on ester bond","protein_coding"
"Seita.9G409300.1","No alias","Setaria italica ","SSU processome assembly factor *(UTP14)","protein_coding"
"Seita.9G410200.1","No alias","Setaria italica ","component *(eL18) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Seita.9G414500.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G459100.1","No alias","Setaria italica ","solute transporter *(MTCC)","protein_coding"
"Seita.9G513500.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G517100.1","No alias","Setaria italica ","component *(uS2) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Seita.9G521400.1","No alias","Setaria italica ","adenylosuccinate synthetase *(PUR11) & EC_6.3 ligase forming carbon-nitrogen bond","protein_coding"
"Sobic.001G004400.1","No alias","Sorghum bicolor ","nucleocytoplasmic export karyopherin *(XPO1) & export karyopherin *(XPO1) of RNA-induced silencing complex (RISC) export","protein_coding"
"Sobic.001G052400.2","No alias","Sorghum bicolor ","pre-60S ribosomal subunit assembly factor *(NOP4)","protein_coding"
"Sobic.001G099800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G173800.1","No alias","Sorghum bicolor ","SSU processome assembly factor *(UTP2/NOP14)","protein_coding"
"Sobic.001G206500.1","No alias","Sorghum bicolor ","component *(NOC2) of ribosomal-subunit proteome nuclear export complexes","protein_coding"
"Sobic.001G239800.1","No alias","Sorghum bicolor ","exoribonuclease *(RRP6L)","protein_coding"
"Sobic.001G352900.1","No alias","Sorghum bicolor ","component *(MAC7)  of MAC spliceosome-associated complex","protein_coding"
"Sobic.001G429600.1","No alias","Sorghum bicolor ","nucleocytoplasmic import karyopherin *(IMB4)","protein_coding"
"Sobic.001G450000.1","No alias","Sorghum bicolor ","scaffold nucleoporin of nuclear pore complex *(NUP133)","protein_coding"
"Sobic.001G453400.2","No alias","Sorghum bicolor ","component *(NOC1) of ribosomal-subunit proteome nuclear export complex","protein_coding"
"Sobic.001G466500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G485600.1","No alias","Sorghum bicolor ","RNA editing factor *(MORF)","protein_coding"
"Sobic.001G537500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G005000.1","No alias","Sorghum bicolor ","SSU processome assembly factor *(UTP6)","protein_coding"
"Sobic.002G007100.1","No alias","Sorghum bicolor ","poly-P/G elongation factor *(eEF5/eIF5A))","protein_coding"
"Sobic.002G052700.1","No alias","Sorghum bicolor ","peptidyl-prolyl cis-trans isomerase *(CYP63/CYP95) & EC_5.2 cis-trans-isomerase","protein_coding"
"Sobic.002G066800.1","No alias","Sorghum bicolor ","multifunctional tRNA ligase *(RLG1)","protein_coding"
"Sobic.002G155000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G223300.1","No alias","Sorghum bicolor ","nucleoporin of nuclear pore complex *(NUP58)","protein_coding"
"Sobic.002G244500.1","No alias","Sorghum bicolor ","ATP phosphoribosyl transferase & EC_2.4 glycosyltransferase","protein_coding"
"Sobic.002G317200.1","No alias","Sorghum bicolor ","tRNA wybutosine biosynthesis enzyme *(TYW2/TYW3)","protein_coding"
"Sobic.002G324300.1","No alias","Sorghum bicolor ","tyrosyl-DNA phosphodiesterase *(TDP1)","protein_coding"
"Sobic.002G325400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G364900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G378900.4","No alias","Sorghum bicolor ","E3 ubiquitin ligase *(RBR-Helicase)","protein_coding"
"Sobic.002G399200.1","No alias","Sorghum bicolor ","rRNA biogenesis RNA helicase *(ROK1)","protein_coding"
"Sobic.002G405500.3","No alias","Sorghum bicolor ","deubiquitinase *(UBP24)","protein_coding"
"Sobic.002G425700.1","No alias","Sorghum bicolor ","component *(POP1) of RNA-dependent RNase P complex","protein_coding"
"Sobic.003G028400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.003G156500.1","No alias","Sorghum bicolor ","component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex","protein_coding"
"Sobic.003G279800.1","No alias","Sorghum bicolor ","regulatory protein *(RGG) of mRNA quality control","protein_coding"
"Sobic.003G322200.1","No alias","Sorghum bicolor ","component *(mS76) of small mitoribosomal-subunit proteome & component *(mS78/mS79) of small mitoribosomal-subunit proteome","protein_coding"
"Sobic.003G330900.1","No alias","Sorghum bicolor ","methylated DNA binding component *(SUVH1/3) of SUVH-DNAJ methylation reader complex & EC_2.1 transferase transferring one-carbon group","protein_coding"
"Sobic.003G361400.1","No alias","Sorghum bicolor ","nucleoporin of nuclear pore complex *(NUP62)","protein_coding"
"Sobic.004G019200.1","No alias","Sorghum bicolor ","component *(NRPA2) of RNA polymerase I complex","protein_coding"
"Sobic.004G047200.1","No alias","Sorghum bicolor ","subunit eta *(CCT7) of CCT chaperonin folding complex","protein_coding"
"Sobic.004G157400.1","No alias","Sorghum bicolor ","SSU processome assembly factor *(UTP7)","protein_coding"
"Sobic.004G260100.2","No alias","Sorghum bicolor ","regulatory protein *(FRIENDLY) of mitochondrion division","protein_coding"
"Sobic.005G028900.2","No alias","Sorghum bicolor ","assembly factor CcdA of CCS cytochrome f/c6 maturation system (system II)","protein_coding"
"Sobic.005G123700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.006G002800.1","No alias","Sorghum bicolor ","tRNA uridine-methyltransferase *(TRM2) & EC_2.1 transferase transferring one-carbon group","protein_coding"
"Sobic.006G058800.1","No alias","Sorghum bicolor ","EC_6.1 ligase forming carbon-oxygen bond & glycine-tRNA ligase","protein_coding"
"Sobic.006G094300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.006G125700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.006G236000.2","No alias","Sorghum bicolor ","component *(NRPE2) of RNA polymerase V complex & component *(NRPD2) of RNA polymerase IV complex","protein_coding"
"Sobic.007G112600.1","No alias","Sorghum bicolor ","nucleotide exchange factor *(MGE)","protein_coding"
"Sobic.007G145100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.007G155700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.007G217100.1","No alias","Sorghum bicolor ","regulatory protein *(THAL) of rRNA transcription control","protein_coding"
"Sobic.008G017200.1","No alias","Sorghum bicolor ","scaffold nucleoporin of nuclear pore complex *(ALADIN)","protein_coding"
"Sobic.008G034400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.008G088600.1","No alias","Sorghum bicolor ","pre-rRNA cleavage factor involved in ITS1 rRNA removal *(SLX9/SAHY)","protein_coding"
"Sobic.008G171700.1","No alias","Sorghum bicolor ","component *(ORC3) of origin recognition complex","protein_coding"
"Sobic.009G010300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.009G040500.1","No alias","Sorghum bicolor ","pre-60S ribosomal subunit assembly factor *(SMO4)","protein_coding"
"Sobic.009G042100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.009G101200.1","No alias","Sorghum bicolor ","auxiliary component *(NAA25) of NatB N-terminal acetylase complex","protein_coding"
"Sobic.009G126700.2","No alias","Sorghum bicolor ","regulatory protein *(CLSY3/4) of transacting siRNA pathway","protein_coding"
"Sobic.009G213800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.009G214200.1","No alias","Sorghum bicolor ","glycinamide RN synthetase *(GARS) & EC_6.3 ligase forming carbon-nitrogen bond","protein_coding"
"Sobic.009G217200.1","No alias","Sorghum bicolor ","component *(NRPA1) of RNA polymerase I complex","protein_coding"
"Sobic.009G253400.1","No alias","Sorghum bicolor ","regulatory protein *(RGG) of mRNA quality control","protein_coding"
"Sobic.010G017900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.010G046300.1","No alias","Sorghum bicolor ","RNA endonuclease *(FCF1)","protein_coding"
"Sobic.010G055700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.010G103200.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.010G114900.1","No alias","Sorghum bicolor ","nucleocytoplasmic import karyopherin *(IMB5)","protein_coding"
"Sobic.010G188000.1","No alias","Sorghum bicolor ","component *(CLO/SNU114/MAC11)  of MAC spliceosome-associated complex","protein_coding"
"Sobic.010G206300.1","No alias","Sorghum bicolor ","EC_6.1 ligase forming carbon-oxygen bond & isoleucine-tRNA ligase","protein_coding"
"Sobic.010G268200.1","No alias","Sorghum bicolor ","RING-H2-class ATL-subclass E3 ubiquitin ligase","protein_coding"
"Solyc01g008840","No alias","Solanum lycopersicum","COP9 signalosome complex subunit 2 (AHRD V3.3 *** W9QZI3_9ROSA)","protein_coding"
"Solyc01g011000","No alias","Solanum lycopersicum","Eukaryotic translation initiation factor 5A (AHRD V3.3 *** K4BNF7_SOLLC)","protein_coding"
"Solyc01g057850","No alias","Solanum lycopersicum","Nuclear export mediator factor Nemf (AHRD V3.3 *** A0A0B0NE50_GOSAR)","protein_coding"
"Solyc01g065530","No alias","Solanum lycopersicum","Protein COBRA, putative (AHRD V3.3 *** B9RZK6_RICCO)","protein_coding"
"Solyc01g086750","No alias","Solanum lycopersicum","Clustered mitochondria protein homolog (AHRD V3.3 *** K4AY68_SOLLC)","protein_coding"
"Solyc01g091910","No alias","Solanum lycopersicum","phospholipase PLDb2","protein_coding"
"Solyc01g094560","No alias","Solanum lycopersicum","60S ribosomal protein L36 (AHRD V3.3 *** K4AZJ7_SOLLC)","protein_coding"
"Solyc01g098880","No alias","Solanum lycopersicum","Seryl-tRNA synthetase, putative (AHRD V3.3 *** B9RKX9_RICCO)","protein_coding"
"Solyc01g103080","No alias","Solanum lycopersicum","ATP-dependent RNA helicase family protein (AHRD V3.3 *** B9N0I2_POPTR)","protein_coding"
"Solyc01g103740","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc01g105230","No alias","Solanum lycopersicum","Calmodulin-binding transcription activator (AHRD V3.3 *** Q8S389_BRANA)","protein_coding"
"Solyc02g032920","No alias","Solanum lycopersicum","U3 small nucleolar RNA-associated protein 6-like protein (AHRD V3.3 *** W9R9F9_9ROSA)","protein_coding"
"Solyc02g063050","No alias","Solanum lycopersicum","Tripartite motif-containing 29 (AHRD V3.3 *** A0A0B0P7U5_GOSAR)","protein_coding"
"Solyc02g065630","No alias","Solanum lycopersicum","Sarcolemmal membrane-associated protein, putative isoform 1 (AHRD V3.3 *** A0A061EPT5_THECC)","protein_coding"
"Solyc02g068750","No alias","Solanum lycopersicum","LOW QUALITY:Glycoprotease M22 family protein (AHRD V3.3 *** D7ME14_ARALL)","protein_coding"
"Solyc02g086970","No alias","Solanum lycopersicum","Aldehyde dehydrogenase (AHRD V3.3 *** Q1AFF6_VITPS)","protein_coding"
"Solyc02g089690","No alias","Solanum lycopersicum","Trichome birefringence-like 19 (AHRD V3.3 *** A0A061EH35_THECC)","protein_coding"
"Solyc02g094560","No alias","Solanum lycopersicum","Aminopeptidase (AHRD V3.3 *** G7KXA9_MEDTR)","protein_coding"
"Solyc02g094600","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc02g094610","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc03g025740","No alias","Solanum lycopersicum","Actin-depolymerizing factor (AHRD V3.3 *** A0A199VAH1_ANACO)","protein_coding"
"Solyc03g111390","No alias","Solanum lycopersicum","Kelch repeat protein, putative (AHRD V3.3 *** B9RAN1_RICCO)","protein_coding"
"Solyc03g112190","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9RAT8_RICCO)","protein_coding"
"Solyc04g005340","No alias","Solanum lycopersicum","Alpha-1,4-glucan-protein synthase [UDP-forming] 1 (AHRD V3.3 *** UPTG1_SOLTU)","protein_coding"
"Solyc04g009660","No alias","Solanum lycopersicum","LOW QUALITY:Nbs-lrr resistance protein (AHRD V3.3 *** A0A061FZT5_THECC)","protein_coding"
"Solyc04g016370","No alias","Solanum lycopersicum","DNA helicase INO80-like protein (AHRD V3.3 *** AT3G57300.4)","protein_coding"
"Solyc04g050520","No alias","Solanum lycopersicum","Translational activator GCN1-like protein (AHRD V3.3 *** A0A072U5F0_MEDTR)","protein_coding"
"Solyc04g074690","No alias","Solanum lycopersicum","Ribosomal protein L27/L41, mitochondrial (AHRD V3.3 *** A0A118JZK9_CYNCS)","protein_coding"
"Solyc05g052690","No alias","Solanum lycopersicum","Eukaryotic translation initiation factor 3 subunit F (AHRD V3.3 *** K4C1V0_SOLLC)","protein_coding"
"Solyc06g007150","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT5G58370.3)","protein_coding"
"Solyc06g060370","No alias","Solanum lycopersicum","EamA-like transporter family protein (AHRD V3.3 *** AT1G77610.1)","protein_coding"
"Solyc07g009320","No alias","Solanum lycopersicum","metaxin-related protein","protein_coding"
"Solyc07g039200","No alias","Solanum lycopersicum","WD-repeat protein, putative (AHRD V3.3 *** B9SP08_RICCO)","protein_coding"
"Solyc07g062770","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc07g064930","No alias","Solanum lycopersicum","GrpE protein homolog (AHRD V3.3 *** K4CHH2_SOLLC)","protein_coding"
"Solyc08g062660","No alias","Solanum lycopersicum","Ran binding protein-1","protein_coding"
"Solyc08g062800","No alias","Solanum lycopersicum","RNA helicase DEAD26","protein_coding"
"Solyc08g075090","No alias","Solanum lycopersicum","bHLH transcription factor144","protein_coding"
"Solyc08g079550","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc09g010230","No alias","Solanum lycopersicum","B3 domain-containing protein family (AHRD V3.3 *** A0A151U3H1_CAJCA)","protein_coding"
"Solyc09g015820","No alias","Solanum lycopersicum","Thioredoxin h-like protein (AHRD V3.3 *** Q8H6X3_TOBAC)","protein_coding"
"Solyc09g064920","No alias","Solanum lycopersicum","basic helix-loop-helix (bHLH) DNA-binding superfamily protein (AHRD V3.3 *-* AT1G03040.2)","protein_coding"
"Solyc10g080320","No alias","Solanum lycopersicum","Adenylosuccinate synthetase, chloroplastic (AHRD V3.3 *** K4D2S2_SOLLC)","protein_coding"
"Solyc10g081030","No alias","Solanum lycopersicum","Nascent polypeptide-associated complex subunit alpha-like protein (AHRD V3.3 *** W9S3Y1_9ROSA)","protein_coding"
"Solyc10g084970","No alias","Solanum lycopersicum","WAS/WASL-interacting protein family member 2, putative isoform 1 (AHRD V3.3 *** A0A061FLH8_THECC)","protein_coding"
"Solyc12g006550","No alias","Solanum lycopersicum","Ribosome biogenesis regulatory protein homolog (AHRD V3.3 *** RRS1_ARATH)","protein_coding"
"Solyc12g008940","No alias","Solanum lycopersicum","Nucleosome assembly protein 1-1 (AHRD V3.3 *** NAP1A_TOBAC)","protein_coding"
"Sopen02g011290","No alias","Solanum pennellii","U3 small nucleolar RNA-associated protein 6","protein_coding"
"Sopen12g028550","No alias","Solanum pennellii","Ribosome biogenesis protein SLX9","protein_coding"