"sequence_id","alias","species","description","type" "438324","No alias","Selaginella moellendorffii ","Ribosomal L29 family protein","protein_coding" "442712","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "54256","No alias","Selaginella moellendorffii ","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein","protein_coding" "80248","No alias","Selaginella moellendorffii ","replication factor C1","protein_coding" "AC191287.2_FG001","No alias","Zea mays","replication factor C1","protein_coding" "AC211186.3_FG004","No alias","Zea mays","Function unknown","protein_coding" "AC214168.3_FG001","No alias","Zea mays","E2F transcription factor 3","protein_coding" "At5g22010","No alias","Arabidopsis thaliana","Replication factor C subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C587]","protein_coding" "Bradi1g04226","No alias","Brachypodium distachyon","Transducin/WD40 repeat-like superfamily protein","protein_coding" "Bradi1g05116","No alias","Brachypodium distachyon","Nucleotidylyl transferase superfamily protein","protein_coding" "Bradi1g22590","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi1g28507","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi1g29090","No alias","Brachypodium distachyon","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding" "Bradi1g31417","No alias","Brachypodium distachyon","villin 4","protein_coding" "Bradi1g32977","No alias","Brachypodium distachyon","Zinc finger C-x8-C-x5-C-x3-H type family protein","protein_coding" "Bradi1g33010","No alias","Brachypodium distachyon","Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein","protein_coding" "Bradi1g41808","No alias","Brachypodium distachyon","Cyclin/Brf1-like TBP-binding protein","protein_coding" "Bradi1g47150","No alias","Brachypodium distachyon","translation elongation factor Ts (EF-Ts), putative","protein_coding" "Bradi1g62590","No alias","Brachypodium distachyon","ARM repeat superfamily protein","protein_coding" "Bradi1g67740","No alias","Brachypodium distachyon","FAR1-related sequence 12","protein_coding" "Bradi1g69460","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi1g71495","No alias","Brachypodium distachyon","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding" "Bradi1g74287","No alias","Brachypodium distachyon","RECQ helicase L2","protein_coding" "Bradi1g74997","No alias","Brachypodium distachyon","Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein","protein_coding" "Bradi1g76707","No alias","Brachypodium distachyon","DNAJ heat shock N-terminal domain-containing protein","protein_coding" "Bradi2g04420","No alias","Brachypodium distachyon","NSP-interacting kinase 3","protein_coding" "Bradi2g14670","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi2g28110","No alias","Brachypodium distachyon","Polynucleotidyl transferase, ribonuclease H-like superfamily protein","protein_coding" "Bradi2g34876","No alias","Brachypodium distachyon","nuclear RNA polymerase D1A","protein_coding" "Bradi2g42340","No alias","Brachypodium distachyon","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding" "Bradi2g47780","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi2g49207","No alias","Brachypodium distachyon","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding" "Bradi2g51760","No alias","Brachypodium distachyon","Transducin/WD40 repeat-like superfamily protein","protein_coding" "Bradi2g56690","No alias","Brachypodium distachyon","Protein kinase superfamily protein","protein_coding" "Bradi2g61340","No alias","Brachypodium distachyon","RNA-binding CRS1 / YhbY (CRM) domain protein","protein_coding" "Bradi3g10422","No alias","Brachypodium distachyon","FAR1-related sequence 3","protein_coding" "Bradi3g10437","No alias","Brachypodium distachyon","FAR1-related sequence 5","protein_coding" "Bradi3g13140","No alias","Brachypodium distachyon","Protease-associated (PA) RING/U-box zinc finger family protein","protein_coding" "Bradi3g17950","No alias","Brachypodium distachyon","vernalization5/VIN3-like","protein_coding" "Bradi3g18390","No alias","Brachypodium distachyon","disease resistance family protein / LRR family protein","protein_coding" "Bradi3g18707","No alias","Brachypodium distachyon","villin 4","protein_coding" "Bradi3g20220","No alias","Brachypodium distachyon","vacuolar protein sorting 34","protein_coding" "Bradi3g20480","No alias","Brachypodium distachyon","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding" "Bradi3g20650","No alias","Brachypodium distachyon","RNAse E/G-like","protein_coding" "Bradi3g22420","No alias","Brachypodium distachyon","Enhancer of polycomb-like transcription factor protein","protein_coding" "Bradi3g22650","No alias","Brachypodium distachyon","Polynucleotidyl transferase, ribonuclease H-like superfamily protein","protein_coding" "Bradi3g27027","No alias","Brachypodium distachyon","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding" "Bradi3g29590","No alias","Brachypodium distachyon","homolog of yeast CDT1 B homolog of yeast CDT1 B","protein_coding" "Bradi3g29890","No alias","Brachypodium distachyon","Noc2p family","protein_coding" "Bradi3g30210","No alias","Brachypodium distachyon","DHFS-FPGS homolog B","protein_coding" "Bradi3g30390","No alias","Brachypodium distachyon","DNAJ heat shock N-terminal domain-containing protein","protein_coding" "Bradi3g31377","No alias","Brachypodium distachyon","HIT-type Zinc finger family protein","protein_coding" "Bradi3g32020","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi3g36270","No alias","Brachypodium distachyon","Protein of unknown function (DUF1712)","protein_coding" "Bradi3g36277","No alias","Brachypodium distachyon","DNA repair protein Rad4 family","protein_coding" "Bradi3g38590","No alias","Brachypodium distachyon","F-box/RNI-like superfamily protein","protein_coding" "Bradi3g44920","No alias","Brachypodium distachyon","Iron-sulphur cluster biosynthesis family protein","protein_coding" "Bradi3g48647","No alias","Brachypodium distachyon","TRAF-like family protein","protein_coding" "Bradi3g50020","No alias","Brachypodium distachyon","shortage in chiasmata 1","protein_coding" "Bradi3g51060","No alias","Brachypodium distachyon","Mitochondrial substrate carrier family protein","protein_coding" "Bradi3g51077","No alias","Brachypodium distachyon","Stabilizer of iron transporter SufD / Polynucleotidyl transferase","protein_coding" "Bradi3g59870","No alias","Brachypodium distachyon","RNA helicase family protein","protein_coding" "Bradi4g07810","No alias","Brachypodium distachyon","thymidylate synthase 1","protein_coding" "Bradi4g16040","No alias","Brachypodium distachyon","replication factor C1","protein_coding" "Bradi4g20557","No alias","Brachypodium distachyon","diphthamide synthesis DPH2 family protein","protein_coding" "Bradi4g21770","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi4g22347","No alias","Brachypodium distachyon","Cysteine proteinases superfamily protein","protein_coding" "Bradi4g26050","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi4g34880","No alias","Brachypodium distachyon","ARF GTPase-activating protein","protein_coding" "Bradi4g39130","No alias","Brachypodium distachyon","relative of early flowering 6","protein_coding" "Bradi4g45166","No alias","Brachypodium distachyon","Ankyrin repeat family protein","protein_coding" "Bradi5g02047","No alias","Brachypodium distachyon","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding" "Bradi5g09190","No alias","Brachypodium distachyon","histone deacetylase 9","protein_coding" "Bradi5g13810","No alias","Brachypodium distachyon","Protein phosphatase 2A regulatory B subunit family protein","protein_coding" "Bradi5g14250","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi5g19570","No alias","Brachypodium distachyon","CCAAT-binding factor","protein_coding" "Bradi5g24250","No alias","Brachypodium distachyon","small RNA degrading nuclease 3","protein_coding" "Bradi5g24311","No alias","Brachypodium distachyon","Wall-associated kinase family protein","protein_coding" "Bradi5g26670","No alias","Brachypodium distachyon","pentatricopeptide (PPR) repeat-containing protein","protein_coding" "Brara.A01112.1","No alias","Brassica rapa","histone demethylase *(PKDM7)","protein_coding" "Brara.A01157.1","No alias","Brassica rapa","class III ARF-GAP ARF-GTPase-activating protein","protein_coding" "Brara.A01429.1","No alias","Brassica rapa","WRKY-type transcription factor","protein_coding" "Brara.A01837.1","No alias","Brassica rapa","Trihelix-type transcription factor","protein_coding" "Brara.A02507.1","No alias","Brassica rapa","AGC-VII/NDR protein kinase & protein kinase component *(NDR) of RAM signalling pathway & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.A03033.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A03419.1","No alias","Brassica rapa","methylation reader Alfin of PRC1 complex","protein_coding" "Brara.A03722.1","No alias","Brassica rapa","acyl-CoA-binding protein *(ACBP4/5)","protein_coding" "Brara.B00947.1","No alias","Brassica rapa","component *(RFC1) of PCNA sliding clamp loader complex","protein_coding" "Brara.B01833.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.C00084.1","No alias","Brassica rapa","RNA splicing factor *(RSZ32/33)","protein_coding" "Brara.C00358.1","No alias","Brassica rapa","MYB-RELATED transcription factor *(MYB-R-R)","protein_coding" "Brara.C00421.1","No alias","Brassica rapa","14-3-3 phosphoprotein-binding protein *(GRF)","protein_coding" "Brara.C00750.1","No alias","Brassica rapa","nucleocytoplasmic export karyopherin *(XPO1) & export karyopherin *(XPO1) of RNA-induced silencing complex (RISC) export","protein_coding" "Brara.C00860.1","No alias","Brassica rapa","FRS/FRF-type transcription factor","protein_coding" "Brara.C01649.1","No alias","Brassica rapa","ligand-gated cation channel *(GLR)","protein_coding" "Brara.C02275.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.C02664.1","No alias","Brassica rapa","component *(SPT16) of FACT histone chaperone complex","protein_coding" "Brara.C04027.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.C04457.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.C04458.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.D00150.1","No alias","Brassica rapa","contact site protein (VAP27) of ER-cytoskeleton-plasmamembrane interface","protein_coding" "Brara.D00235.1","No alias","Brassica rapa","catalytic component *(PP2A-phosphatase) of TTP preprophase band formation complex & catalytic component C of PP2A phosphatase complexes & EC_3.1 hydrolase acting on ester bond","protein_coding" "Brara.D00395.1","No alias","Brassica rapa","RNA splicing factor *(SCL28/30/33)","protein_coding" "Brara.D01171.1","No alias","Brassica rapa","component *(CRN/MAC10) of non-snRNP MOS4-associated complex","protein_coding" "Brara.D01588.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.E00767.1","No alias","Brassica rapa","channel-forming component *(Tim17) of inner mitochondrion membrane TIM translocation system","protein_coding" "Brara.E01061.1","No alias","Brassica rapa","E3 ubiquitin protein ligase *(PUB60) & component *(MAC3) of MAC spliceosome-associated complex & substrate adaptor *(DCAF1) of CUL4-DDB1 E3 ubiquitin ligase complex","protein_coding" "Brara.E02258.1","No alias","Brassica rapa","mitochondrial RNA pseudouridine synthase *(PUS3/4)","protein_coding" "Brara.E02543.1","No alias","Brassica rapa","Kinesin-13-type motor protein & microtubule destabilizing motor protein *(Kinesin-13)","protein_coding" "Brara.E02707.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.E03230.1","No alias","Brassica rapa","component *(PIG-S) of GPI transamidase complex","protein_coding" "Brara.F00267.1","No alias","Brassica rapa","Kleisin-like bridging component *(NSE4) of homologous recombination repair Smc5-Smc6 complex","protein_coding" "Brara.F00915.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.F00931.1","No alias","Brassica rapa","ARF-GTPase guanyl-nucleotide exchange factor *(GBF)","protein_coding" "Brara.F00977.1","No alias","Brassica rapa","methylation reader Alfin of PRC1 complex","protein_coding" "Brara.F02384.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.F02410.1","No alias","Brassica rapa","14-3-3 phosphoprotein-binding protein *(GRF)","protein_coding" "Brara.F02914.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.G00677.1","No alias","Brassica rapa","mRNA endoribonuclease *(G3BP)","protein_coding" "Brara.G01104.1","No alias","Brassica rapa","RNA splicing regulator *(NSR)","protein_coding" "Brara.G01344.1","No alias","Brassica rapa","subfamily ABCG transporter","protein_coding" "Brara.G01371.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.G01398.1","No alias","Brassica rapa","histone *(H2B)","protein_coding" "Brara.G01760.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.G01779.1","No alias","Brassica rapa","transcriptional co-repressor *(ECAP)","protein_coding" "Brara.G02946.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.G03041.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.G03211.1","No alias","Brassica rapa","component *(eL6) of large ribosomal-subunit (LSU) proteome","protein_coding" "Brara.G03301.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.H00698.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.H00741.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.H01628.1","No alias","Brassica rapa","splicing factor *(SR45a)","protein_coding" "Brara.H02124.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.H02484.1","No alias","Brassica rapa","GTPase effector *(RIP)","protein_coding" "Brara.I00433.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.I01409.1","No alias","Brassica rapa","component *(PIG-U) of GPI transamidase complex","protein_coding" "Brara.I02004.1","No alias","Brassica rapa","tRNA guanine-methyltransferase *(TRM10) & EC_2.1 transferase transferring one-carbon group","protein_coding" "Brara.I05337.1","No alias","Brassica rapa","component *(uL29m) of large mitoribosomal-subunit proteome","protein_coding" "Brara.I05469.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J00450.1","No alias","Brassica rapa","fission factor *(PMD) & lysine-rich arabinogalactan protein","protein_coding" "Brara.J00762.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J01396.1","No alias","Brassica rapa","SSU processome assembly factor *(FAP7/AAK6) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.J01842.1","No alias","Brassica rapa","ubiquitin adaptor protein *(TOL)","protein_coding" "Brara.J01867.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J02103.1","No alias","Brassica rapa","aspartate kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.J02805.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.K01023.1","No alias","Brassica rapa","P2B-type calcium cation-transporting ATPase *(ACA)","protein_coding" "Cre01.g005050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre01.g009731","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre01.g011950","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre01.g024950","No alias","Chlamydomonas reinhardtii","Uncharacterized protein","protein_coding" "Cre01.g028500","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre01.g030150","No alias","Chlamydomonas reinhardtii","E2F target gene 1","protein_coding" "Cre02.g082000","No alias","Chlamydomonas reinhardtii","HhH-GPD base excision DNA repair family protein","protein_coding" "Cre02.g089050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre02.g089850","No alias","Chlamydomonas reinhardtii","high mobility group","protein_coding" "Cre02.g090700","No alias","Chlamydomonas reinhardtii","Protein kinase superfamily protein","protein_coding" "Cre02.g095600","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre02.g096050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre02.g097200","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre02.g099900","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre02.g101050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre02.g103350","No alias","Chlamydomonas reinhardtii","fatty acid amide hydrolase","protein_coding" "Cre02.g112300","No alias","Chlamydomonas reinhardtii","calpain-type cysteine protease family","protein_coding" "Cre03.g154651","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre03.g175850","No alias","Chlamydomonas reinhardtii","apurinic endonuclease-redox protein","protein_coding" "Cre03.g192550","No alias","Chlamydomonas reinhardtii","DNA repair-recombination protein (RAD50)","protein_coding" "Cre03.g199400","No alias","Chlamydomonas reinhardtii","origin recognition complex second largest subunit 2","protein_coding" "Cre03.g203451","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre03.g212753","No alias","Chlamydomonas reinhardtii","Protein of unknown function DUF455","protein_coding" "Cre04.g218600","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre04.g226550","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre05.g232751","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre05.g233350","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre05.g240500","No alias","Chlamydomonas reinhardtii","Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2","protein_coding" "Cre06.g249650","No alias","Chlamydomonas reinhardtii","C-terminal domain phosphatase-like 3","protein_coding" "Cre06.g251300","No alias","Chlamydomonas reinhardtii","Small nuclear ribonucleoprotein family protein","protein_coding" "Cre06.g278127","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre06.g281900","No alias","Chlamydomonas reinhardtii","ZIP metal ion transporter family","protein_coding" "Cre06.g288100","No alias","Chlamydomonas reinhardtii","mRNAadenosine methylase","protein_coding" "Cre07.g332400","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre07.g337150","No alias","Chlamydomonas reinhardtii","replication factor C 2","protein_coding" "Cre07.g347600","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre07.g356950","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre08.g358537","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre08.g373916","No alias","Chlamydomonas reinhardtii","exoribonuclease 2","protein_coding" "Cre08.g374050","No alias","Chlamydomonas reinhardtii","DNA polymerase delta small subunit","protein_coding" "Cre08.g378100","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre09.g390000","No alias","Chlamydomonas reinhardtii","chromatin remodeling factor17","protein_coding" "Cre09.g397845","No alias","Chlamydomonas reinhardtii","MUTS homolog 6","protein_coding" "Cre09.g402182","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre10.g423800","No alias","Chlamydomonas reinhardtii","Ku80 family protein","protein_coding" "Cre10.g434850","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre10.g456800","No alias","Chlamydomonas reinhardtii","VEFS-Box of polycomb protein","protein_coding" "Cre10.g463700","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre10.g467200","No alias","Chlamydomonas reinhardtii","Ataxia telangiectasia-mutated and RAD3-related","protein_coding" "Cre11.g481400","No alias","Chlamydomonas reinhardtii","Protein kinase superfamily protein","protein_coding" "Cre12.g503450","No alias","Chlamydomonas reinhardtii","SET domain-containing protein","protein_coding" "Cre12.g521200","No alias","Chlamydomonas reinhardtii","replication factor C1","protein_coding" "Cre12.g521800","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre12.g527300","No alias","Chlamydomonas reinhardtii","replication factor C subunit 3","protein_coding" "Cre12.g530450","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre12.g546700","No alias","Chlamydomonas reinhardtii","EMBRYO DEFECTIVE 140","protein_coding" "Cre12.g551550","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre12.g553250","No alias","Chlamydomonas reinhardtii","phosphofructokinase 5","protein_coding" "Cre12.g555600","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre12.g556650","No alias","Chlamydomonas reinhardtii","Transducin/WD40 repeat-like superfamily protein","protein_coding" "Cre13.g562950","No alias","Chlamydomonas reinhardtii","anaphase promoting complex 6","protein_coding" "Cre13.g575950","No alias","Chlamydomonas reinhardtii","homolog of histone chaperone HIRA","protein_coding" "Cre13.g578501","No alias","Chlamydomonas reinhardtii","RING/FYVE/PHD zinc finger superfamily protein","protein_coding" "Cre13.g583100","No alias","Chlamydomonas reinhardtii","KDO transferase A","protein_coding" "Cre14.g612000","No alias","Chlamydomonas reinhardtii","Protein kinase family protein with ARM repeat domain","protein_coding" "Cre14.g618950","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre14.g630600","No alias","Chlamydomonas reinhardtii","ubiquitin-specific protease 16","protein_coding" "Cre16.g669700","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre16.g670550","No alias","Chlamydomonas reinhardtii","5\'-3\' exonuclease family protein","protein_coding" "Cre16.g671900","No alias","Chlamydomonas reinhardtii","peptidylprolyl cis/trans isomerase, NIMA-interacting 1","protein_coding" "Cre16.g681578","No alias","Chlamydomonas reinhardtii","anaphase-promoting complex subunit 8","protein_coding" "Cre16.g682950","No alias","Chlamydomonas reinhardtii","cell cycle checkpoint control protein family","protein_coding" "Cre16.g687500","No alias","Chlamydomonas reinhardtii","actin related protein 2","protein_coding" "Cre16.g688200","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre16.g688850","No alias","Chlamydomonas reinhardtii","Major facilitator superfamily protein","protein_coding" "Cre16.g693750","No alias","Chlamydomonas reinhardtii","Transducin/WD40 repeat-like superfamily protein","protein_coding" "Cre17.g718850","No alias","Chlamydomonas reinhardtii","replication protein A 1A","protein_coding" "Cre17.g719050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre17.g742200","No alias","Chlamydomonas reinhardtii","Regulator of chromosome condensation (RCC1) family protein","protein_coding" "Cre17.g746247","No alias","Chlamydomonas reinhardtii","SET domain-containing protein","protein_coding" "evm.model.contig_2058.3","No alias","Porphyridium purpureum","(at5g15920 : 374.0) Encodes SMC5 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 5), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage.; structural maintenance of chromosomes 5 (SMC5); FUNCTIONS IN: ATP binding; INVOLVED IN: sister chromatid cohesion, chromosome segregation; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G61460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 748.0) & (original description: no original description)","protein_coding" "evm.model.contig_2060.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2062.17","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2064.10","No alias","Porphyridium purpureum","(at2g45240 : 416.0) Encodes a cytoplasmic MAP1 like methionine aminopeptidase which is involved in removing the N-terminal methionine from proteins. Induced mutants using RNAi technology which knocks out both MAP1 and MAP2 like genes show abnormal development.; methionine aminopeptidase 1A (MAP1A); FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity, zinc ion binding; INVOLVED IN: protein processing, N-terminal protein amino acid modification; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase M24, structural domain (InterPro:IPR000994), Peptidase M24A, methionine aminopeptidase, subfamily 1 (InterPro:IPR002467), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: methionine aminopeptidase 1B (TAIR:AT1G13270.1); Has 18085 Blast hits to 18064 proteins in 2832 species: Archae - 403; Bacteria - 12111; Metazoa - 396; Fungi - 241; Plants - 256; Viruses - 0; Other Eukaryotes - 4678 (source: NCBI BLink). & (reliability: 832.0) & (original description: no original description)","protein_coding" "evm.model.contig_2068.18","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2100.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2106.5","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding" "evm.model.contig_2121.5","No alias","Porphyridium purpureum","(gnl|cdd|68872 : 221.0) no description available & (at3g47450 : 102.0) Encodes a protein with similarity to the bacterial YqeH GTPase required for proper ribosome assembly. In Arabidopsis, mutant analyses show that this protein regulates growth and hormonal signaling in plants. It also attenuates oxidative stress and reactive oxygen species (ROS). It also seems to be involved in regulating leaf senescence and cell death. This gene product is also involved in nitric oxide biosynthesis in response to ABA but not exogenous H2O2. This protein also appears to be required for proper plastid biogenesis. Levels of several plastid-localized proteins, including RBCL, ClpP1, and the MEP biosynthesis enzymes DXS and DXR are altered in rif1-1 mutants. This protein was originally characterized as a mitrochondrial-localized nitric oxide synthase, but, the synthase activity was later disproven. In addition, new studies with GFP fusion proteins and chloroplast import assays suggest that this protein is found in chloroplasts.; NO ASSOCIATED 1 (NOA1); FUNCTIONS IN: GTPase activity; INVOLVED IN: in 8 processes; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G57180.1); Has 1589 Blast hits to 1531 proteins in 754 species: Archae - 6; Bacteria - 1199; Metazoa - 159; Fungi - 35; Plants - 109; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink). & (q6ypg5|nos_orysa : 94.0) Putative nitric-oxide synthase (EC 1.14.13.39) - Oryza sativa (Rice) & (gnl|cdd|37260 : 85.5) no description available & (reliability: 204.0) & (original description: no original description)","protein_coding" "evm.model.contig_2127.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2137.2","No alias","Porphyridium purpureum","(at4g25540 : 370.0) encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G).; homolog of DNA mismatch repair protein MSH3 (MSH3); CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695); BEST Arabidopsis thaliana protein match is: MUTS homolog 6 (TAIR:AT4G02070.2); Has 14547 Blast hits to 13713 proteins in 2703 species: Archae - 153; Bacteria - 9793; Metazoa - 705; Fungi - 864; Plants - 451; Viruses - 3; Other Eukaryotes - 2578 (source: NCBI BLink). & (q9xgc9|msh2_maize : 169.0) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 740.0) & (original description: no original description)","protein_coding" "evm.model.contig_2140.1","No alias","Porphyridium purpureum","(at5g26880 : 95.9) AGAMOUS-like 26; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537). & (reliability: 191.8) & (original description: no original description)","protein_coding" "evm.model.contig_2176.1","No alias","Porphyridium purpureum","(at4g02070 : 315.0) encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.; MUTS homolog 6 (MSH6); FUNCTIONS IN: damaged DNA binding; INVOLVED IN: mismatch repair; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein Msh6 (InterPro:IPR017261), DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-homologue MSH6 (InterPro:IPR015536), Tudor domain (InterPro:IPR002999); BEST Arabidopsis thaliana protein match is: homolog of DNA mismatch repair protein MSH3 (TAIR:AT4G25540.1). & (q9xgc9|msh2_maize : 162.0) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 630.0) & (original description: no original description)","protein_coding" "evm.model.contig_2190.7","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2210.4","No alias","Porphyridium purpureum","(p55871|if2b_maldo : 201.0) Eukaryotic translation initiation factor 2 subunit beta (eIF-2-beta) - Malus domestica (Apple) (Malus sylvestris) & (at5g20920 : 199.0) protein synthesis initiation factor eIF2 beta; eukaryotic translation initiation factor 2 beta subunit (EIF2 BETA); FUNCTIONS IN: protein binding, translation initiation factor activity; INVOLVED IN: translational initiation, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), Translation initiation factor IF2/IF5 (InterPro:IPR002735); BEST Arabidopsis thaliana protein match is: Translation initiation factor IF2/IF5 (TAIR:AT3G07920.1); Has 1323 Blast hits to 1320 proteins in 358 species: Archae - 271; Bacteria - 0; Metazoa - 350; Fungi - 277; Plants - 186; Viruses - 4; Other Eukaryotes - 235 (source: NCBI BLink). & (reliability: 398.0) & (original description: no original description)","protein_coding" "evm.model.contig_2273.14","No alias","Porphyridium purpureum","(at2g38770 : 117.0) EMBRYO DEFECTIVE 2765 (EMB2765); LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RNA helicase, putative (TAIR:AT5G47010.1); Has 4121 Blast hits to 3614 proteins in 689 species: Archae - 125; Bacteria - 655; Metazoa - 959; Fungi - 1056; Plants - 630; Viruses - 0; Other Eukaryotes - 696 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description)","protein_coding" "evm.model.contig_2294.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2323.2","No alias","Porphyridium purpureum","(at5g11900 : 103.0) Translation initiation factor SUI1 family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Density-regulated protein DRP1 (InterPro:IPR005873); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 206.0) & (original description: no original description)","protein_coding" "evm.model.contig_3397.18","No alias","Porphyridium purpureum","(at1g52980 : 441.0) GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917), NGP1, N-terminal (InterPro:IPR012971); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT3G07050.1); Has 37841 Blast hits to 9407 proteins in 1963 species: Archae - 139; Bacteria - 33291; Metazoa - 1149; Fungi - 897; Plants - 387; Viruses - 125; Other Eukaryotes - 1853 (source: NCBI BLink). & (reliability: 882.0) & (original description: no original description)","protein_coding" "evm.model.contig_3423.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3443.10","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding" "evm.model.contig_3484.2","No alias","Porphyridium purpureum","(at4g05420 : 736.0) Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis.; damaged DNA binding protein 1A (DDB1A); FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: negative regulation of transcription, negative regulation of photomorphogenesis; LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1B (TAIR:AT4G21100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q7xwp1|cpsf1_orysa : 81.6) Probable cleavage and polyadenylation specificity factor 160 kDa subunit (CPSF 160 kDa subunit) - Oryza sativa (Rice) & (reliability: 1472.0) & (original description: no original description)","protein_coding" "evm.model.contig_3490.18","No alias","Porphyridium purpureum","(at1g27530 : 202.0) CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-fold modifier-conjugating enzyme 1 (InterPro:IPR014806); Has 269 Blast hits to 269 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). & (reliability: 404.0) & (original description: no original description)","protein_coding" "evm.model.contig_3702.1","No alias","Porphyridium purpureum","(at2g38560 : 98.2) Encodes RNA polymerase II transcript elongation factor TFIIS. Complements yeast TFIIS mutation. Mutant plants display essentially normal development, but they flower slightly earlier than the wild type and show clearly reduced seed dormancy.; transcript elongation factor IIS (TFIIS); CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription elongation factor S-II, central domain (InterPro:IPR003618), Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription elongation factor, IIS (InterPro:IPR016492), Transcription elongation factor, TFIIS (InterPro:IPR006289), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G42730.1); Has 1858 Blast hits to 1830 proteins in 294 species: Archae - 58; Bacteria - 2; Metazoa - 702; Fungi - 370; Plants - 279; Viruses - 52; Other Eukaryotes - 395 (source: NCBI BLink). & (reliability: 196.4) & (original description: no original description)","protein_coding" "evm.model.contig_4398.14","No alias","Porphyridium purpureum","(q8h6b1|spt16_maize : 509.0) FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) (Global transcription factor group C protein 102) - Zea mays (Maize) & (at4g10710 : 501.0) encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SPT16.Along with SSRP1 binds to the promoter of FLC.; global transcription factor C (SPT16); INVOLVED IN: vegetative to reproductive phase transition of meristem; LOCATED IN: nuclear euchromatin, FACT complex, nucleolus, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1747, eukaryote (InterPro:IPR013719), Peptidase M24, structural domain (InterPro:IPR000994), FACT complex subunit Spt16p/Cdc68p (InterPro:IPR013953); BEST Arabidopsis thaliana protein match is: GTC2 (TAIR:AT4G10670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1002.0) & (original description: no original description)","protein_coding" "evm.model.contig_4410.27","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding" "evm.model.contig_4412.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4443.12","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4461.7","No alias","Porphyridium purpureum","(at5g22010 : 331.0) replication factor C1 (RFC1); FUNCTIONS IN: DNA clamp loader activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex, intracellular; CONTAINS InterPro DOMAIN/s: DNA replication factor RFC1, C-terminal (InterPro:IPR013725), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA replication factor C, large subunit (InterPro:IPR012178), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G04730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 662.0) & (original description: no original description)","protein_coding" "evm.model.contig_460.7","No alias","Porphyridium purpureum","(at2g39140 : 87.8) Suppressor of var2 variegation phenotype. Chloroplast localized. Loss of function mutant has defects in chloroplast protein translation and rRNA processing. Similar in sequence to pseudouridine synthase proteins.; SUPPRESSOR OF VARIEGATION 1 (SVR1); CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), RNA-binding S4 (InterPro:IPR002942), Pseudouridine synthase, RsuA and RluB/E/F, conserved site (InterPro:IPR018496); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT3G43340.1); Has 12713 Blast hits to 12709 proteins in 2415 species: Archae - 0; Bacteria - 10639; Metazoa - 2; Fungi - 2; Plants - 70; Viruses - 0; Other Eukaryotes - 2000 (source: NCBI BLink). & (reliability: 175.6) & (original description: no original description)","protein_coding" "evm.model.contig_506.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_522.12","No alias","Porphyridium purpureum","(at1g12770 : 209.0) Encodes a DEAD-box RNA helicase that localizes to mitochondria and is essential for regulating cell-to-cell transport via plasmodesmata.; embryo defective 1586 (EMB1586); FUNCTIONS IN: RNA helicase activity; INVOLVED IN: plasmodesma organization, plasmodesmata-mediated intercellular transport, embryo development ending in seed dormancy; LOCATED IN: mitochondrion; EXPRESSED IN: embryo, root, flower, shoot meristem; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 38833 Blast hits to 38121 proteins in 2993 species: Archae - 753; Bacteria - 18819; Metazoa - 5837; Fungi - 4441; Plants - 2445; Viruses - 12; Other Eukaryotes - 6526 (source: NCBI BLink). & (q41382|rh7_spiol : 131.0) DEAD-box ATP-dependent RNA helicase 7 (EC 3.6.1.-) - Spinacia oleracea (Spinach) & (reliability: 418.0) & (original description: no original description)","protein_coding" "evm.model.contig_557.1","No alias","Porphyridium purpureum","(at5g38110 : 189.0) This gene is predicted to encode a silencing group A protein. Plant lines expressing RNAi constructs directed against SGA1 have reduced levels of agrobacterium-mediated root transformation.; anti- silencing function 1b (ASF1B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA mediated transformation, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Histone chaperone, ASF1-like (InterPro:IPR006818); BEST Arabidopsis thaliana protein match is: ASF1 like histone chaperone (TAIR:AT1G66740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 378.0) & (original description: no original description)","protein_coding" "evm.model.contig_570.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_790.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000042.30","No alias","Cyanophora paradoxa","(at1g63160 : 390.0) replication factor C 2 (RFC2); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA) (TAIR:AT1G21690.1); Has 17520 Blast hits to 17472 proteins in 2840 species: Archae - 620; Bacteria - 9832; Metazoa - 859; Fungi - 958; Plants - 372; Viruses - 89; Other Eukaryotes - 4790 (source: NCBI BLink). & (reliability: 780.0) & (original description: no original description)","protein_coding" "evm.model.tig00000073.22","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000076.93","No alias","Cyanophora paradoxa","(o04235|ssrp1_vicfa : 250.0) FACT complex subunit SSRP1 (Facilitates chromatin transcription complex subunit SSRP1) (Recombination signal sequence recognition protein 1) - Vicia faba (Broad bean) & (at3g28730 : 239.0) encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SSRP1. Along with STP16 binds to the promoter of FLC.; high mobility group (HMG); CONTAINS InterPro DOMAIN/s: Structure-specific recognition protein (InterPro:IPR000969), High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B1 (TAIR:AT3G51880.2); Has 8066 Blast hits to 7188 proteins in 653 species: Archae - 0; Bacteria - 14; Metazoa - 5623; Fungi - 822; Plants - 671; Viruses - 15; Other Eukaryotes - 921 (source: NCBI BLink). & (reliability: 478.0) & (original description: no original description)","protein_coding" "evm.model.tig00000144.112","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000144.164","No alias","Cyanophora paradoxa","(at2g16440 : 634.0) MINICHROMOSOME MAINTENANCE 4 (MCM4); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 4 (InterPro:IPR008047); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT5G44635.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q43704|mcm3_maize : 294.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1268.0) & (original description: no original description)","protein_coding" "evm.model.tig00000144.166","No alias","Cyanophora paradoxa","(at3g12380 : 184.0) Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP gene family.; actin-related protein 5 (ARP5); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: Actin-like ATPase superfamily protein (TAIR:AT2G42100.1). & (p02581|act1_soybn : 93.6) Actin-1 - Glycine max (Soybean) & (reliability: 368.0) & (original description: no original description)","protein_coding" "evm.model.tig00000144.19","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000189.50","No alias","Cyanophora paradoxa","(at2g47980 : 176.0) Essential to the monopolar orientation of the kinetochores during meiosis.; sister-chromatid cohesion protein 3 (SCC3); FUNCTIONS IN: binding; INVOLVED IN: mitosis, attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation, meiotic sister chromatid cohesion, centromeric; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), STAG (InterPro:IPR013721), Stromalin conservative domain (InterPro:IPR020839); Has 568 Blast hits to 559 proteins in 184 species: Archae - 0; Bacteria - 2; Metazoa - 324; Fungi - 134; Plants - 52; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). & (reliability: 352.0) & (original description: no original description)","protein_coding" "evm.model.tig00000203.13","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000241.38","No alias","Cyanophora paradoxa","(at4g02060 : 657.0) Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.; PROLIFERA (PRL); CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 7 (InterPro:IPR008050); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT5G44635.1). & (q43704|mcm3_maize : 291.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1314.0) & (original description: no original description)","protein_coding" "evm.model.tig00000361.77","No alias","Cyanophora paradoxa","(at3g10180 : 311.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G59540.1); Has 155291 Blast hits to 84008 proteins in 3275 species: Archae - 1854; Bacteria - 27736; Metazoa - 67441; Fungi - 13681; Plants - 10077; Viruses - 530; Other Eukaryotes - 33972 (source: NCBI BLink). & (p46869|fla10_chlre : 233.0) Kinesin-like protein FLA10 (Protein KHP1) - Chlamydomonas reinhardtii & (reliability: 622.0) & (original description: no original description)","protein_coding" "evm.model.tig00000615.79","No alias","Cyanophora paradoxa","(at5g26360 : 697.0) TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, gamma subunit (InterPro:IPR012719), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p54411|tcpe2_avesa : 295.0) T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K36) - Avena sativa (Oat) & (reliability: 1394.0) & (original description: no original description)","protein_coding" "evm.model.tig00000691.15","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000704.48","No alias","Cyanophora paradoxa","(at5g27740 : 386.0) A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.; EMBRYO DEFECTIVE 2775 (EMB2775); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp-loader complex, subunit E, C-terminal (InterPro:IPR019483), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA) (TAIR:AT1G21690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 772.0) & (original description: no original description)","protein_coding" "evm.model.tig00000754.31","No alias","Cyanophora paradoxa","(at1g08130 : 306.0) Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus.; DNA ligase 1 (LIG1); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, DNA replication, DNA recombination; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059); BEST Arabidopsis thaliana protein match is: ATP-dependent DNA ligase (TAIR:AT1G49250.1); Has 3556 Blast hits to 3521 proteins in 879 species: Archae - 298; Bacteria - 1538; Metazoa - 375; Fungi - 434; Plants - 112; Viruses - 159; Other Eukaryotes - 640 (source: NCBI BLink). & (q7x7e9|dnl4_orysa : 80.9) Putative DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (Polydeoxyribonucleotide synthase [ATP] 4) - Oryza sativa (Rice) & (reliability: 612.0) & (original description: no original description)","protein_coding" "evm.model.tig00000789.46","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000823.19","No alias","Cyanophora paradoxa","(at2g06510 : 172.0) Encodes a homolog of Replication Protein A that is involved in meiosis I in pollen mother cells. rpa1a mutants have a reduced number of class I crossovers. The protein is located in chromatin-associated foci in early leptotene and can be detected in these foci until late pachytene of meiosis I.; replication protein A 1A (RPA1A); FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: nuclear chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor A, C-terminal (InterPro:IPR013955), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related (TAIR:AT4G19130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 344.0) & (original description: no original description)","protein_coding" "evm.model.tig00000849.10","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000912.4","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00001187.15","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00001187.21","No alias","Cyanophora paradoxa","(at1g18480 : 97.4) Calcineurin-like metallo-phosphoesterase superfamily protein; FUNCTIONS IN: hydrolase activity, protein serine/threonine phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT1G07010.1); Has 638 Blast hits to 634 proteins in 194 species: Archae - 15; Bacteria - 274; Metazoa - 0; Fungi - 21; Plants - 102; Viruses - 3; Other Eukaryotes - 223 (source: NCBI BLink). & (reliability: 194.8) & (original description: no original description)","protein_coding" "evm.model.tig00001224.8","No alias","Cyanophora paradoxa","(at3g18524 : 614.0) Encodes a DNA mismatch repair homolog of human MutS gene, MSH6. MSH2 is involved in maintaining genome stability and repressing recombination of mismatched heteroduplexes.There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2 has different binding specificity to different mismatches in combination with MSH3, MSH6, or MSH7.; MUTS homolog 2 (MSH2); FUNCTIONS IN: damaged DNA binding, protein binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, negative regulation of reciprocal meiotic recombination; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein, MSH2 (InterPro:IPR011184); BEST Arabidopsis thaliana protein match is: homolog of DNA mismatch repair protein MSH3 (TAIR:AT4G25540.1); Has 13560 Blast hits to 13453 proteins in 2654 species: Archae - 128; Bacteria - 8942; Metazoa - 734; Fungi - 813; Plants - 457; Viruses - 3; Other Eukaryotes - 2483 (source: NCBI BLink). & (q9xgc9|msh2_maize : 591.0) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 1228.0) & (original description: no original description)","protein_coding" "evm.model.tig00001302.4","No alias","Cyanophora paradoxa","(at4g24710 : 354.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Chaperonin clpA/B (InterPro:IPR001270); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 23595 Blast hits to 21814 proteins in 2884 species: Archae - 1432; Bacteria - 8057; Metazoa - 4130; Fungi - 3211; Plants - 2291; Viruses - 16; Other Eukaryotes - 4458 (source: NCBI BLink). & (reliability: 708.0) & (original description: no original description)","protein_coding" "evm.model.tig00020553.145","No alias","Cyanophora paradoxa","(at3g54670 : 678.0) Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment.; TITAN8 (TTN8); CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosome 3 (TAIR:AT5G48600.1). & (reliability: 1356.0) & (original description: no original description)","protein_coding" "evm.model.tig00020553.163","No alias","Cyanophora paradoxa","(at3g16060 : 454.0) ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G16630.2); Has 9813 Blast hits to 9533 proteins in 306 species: Archae - 0; Bacteria - 4; Metazoa - 4228; Fungi - 1343; Plants - 1851; Viruses - 0; Other Eukaryotes - 2387 (source: NCBI BLink). & (o23826|k125_tobac : 175.0) 125 kDa kinesin-related protein - Nicotiana tabacum (Common tobacco) & (reliability: 908.0) & (original description: no original description)","protein_coding" "evm.model.tig00020563.160","No alias","Cyanophora paradoxa","(at5g24630 : 114.0) This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.; brassinosteroid-insensitive4 (BIN4); FUNCTIONS IN: double-stranded DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: DNA topoisomerase complex (ATP-hydrolyzing), nucleus; EXPRESSED IN: cotyledon vascular system, cotyledon, root tip, leaf trichome, leaf; Has 3628 Blast hits to 2405 proteins in 320 species: Archae - 6; Bacteria - 1196; Metazoa - 1107; Fungi - 390; Plants - 165; Viruses - 17; Other Eukaryotes - 747 (source: NCBI BLink). & (reliability: 228.0) & (original description: no original description)","protein_coding" "evm.model.tig00020614.100","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020629.133","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020780.19","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020848.78","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020903.30","No alias","Cyanophora paradoxa","(at5g20890 : 645.0) TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: anchored to plasma membrane, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, beta subunit (InterPro:IPR012716), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 19831 Blast hits to 19435 proteins in 3922 species: Archae - 807; Bacteria - 9602; Metazoa - 2181; Fungi - 1427; Plants - 861; Viruses - 0; Other Eukaryotes - 4953 (source: NCBI BLink). & (p54411|tcpe2_avesa : 246.0) T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K36) - Avena sativa (Oat) & (reliability: 1290.0) & (original description: no original description)","protein_coding" "evm.model.tig00020918.5","No alias","Cyanophora paradoxa","(at5g44635 : 634.0) MINICHROMOSOME MAINTENANCE 6 (MCM6); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: shoot apex; EXPRESSED DURING: IL.00 inflorescence just visible; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 6 (InterPro:IPR008049); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q43704|mcm3_maize : 243.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1268.0) & (original description: no original description)","protein_coding" "evm.model.tig00021017.29","No alias","Cyanophora paradoxa","(at5g22010 : 251.0) replication factor C1 (RFC1); FUNCTIONS IN: DNA clamp loader activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex, intracellular; CONTAINS InterPro DOMAIN/s: DNA replication factor RFC1, C-terminal (InterPro:IPR013725), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA replication factor C, large subunit (InterPro:IPR012178), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G04730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 502.0) & (original description: no original description)","protein_coding" "evm.model.tig00021108.13","No alias","Cyanophora paradoxa","(at1g08730 : 660.0) Class XI myosin gene; XIC; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: Myosin family protein with Dil domain (TAIR:AT1G54560.1); Has 57567 Blast hits to 36765 proteins in 2556 species: Archae - 784; Bacteria - 7621; Metazoa - 29049; Fungi - 4176; Plants - 2435; Viruses - 163; Other Eukaryotes - 13339 (source: NCBI BLink). & (reliability: 1320.0) & (original description: no original description)","protein_coding" "evm.model.tig00021350.16","No alias","Cyanophora paradoxa","(at3g20050 : 727.0) Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1).; T-complex protein 1 alpha subunit (TCP-1); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, alpha subunit (InterPro:IPR012715); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 17155 Blast hits to 17114 proteins in 3594 species: Archae - 808; Bacteria - 7960; Metazoa - 2159; Fungi - 1408; Plants - 801; Viruses - 0; Other Eukaryotes - 4019 (source: NCBI BLink). & (p54411|tcpe2_avesa : 242.0) T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K36) - Avena sativa (Oat) & (reliability: 1454.0) & (original description: no original description)","protein_coding" "evm.model.tig00021357.12","No alias","Cyanophora paradoxa","(at1g21690 : 315.0) embryo defective 1968 (EMB1968); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), Replication factor C (InterPro:IPR013748); BEST Arabidopsis thaliana protein match is: replication factor C 2 (TAIR:AT1G63160.1). & (reliability: 630.0) & (original description: no original description)","protein_coding" "evm.model.tig00021428.12","No alias","Cyanophora paradoxa","(at2g46520 : 613.0) cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative; FUNCTIONS IN: protein transporter activity, importin-alpha export receptor activity, binding; INVOLVED IN: intracellular protein transport, cell proliferation, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), CAS/CSE, C-terminal (InterPro:IPR005043), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Exportin/Importin, Cse1-like (InterPro:IPR013713); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G59020.2); Has 1154 Blast hits to 1141 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 461; Fungi - 384; Plants - 163; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink). & (reliability: 1226.0) & (original description: no original description)","protein_coding" "evm.model.tig00021462.13","No alias","Cyanophora paradoxa","(at3g54610 : 310.0) Encodes a histone acetyltransferase that is plays a role in the determination of the embryonic root-shoot axis. It is also required to regulate the floral meristem activity by modulating the extent of expression of WUS and AG. In other eukaryotes, this protein is recruited to specific promoters by DNA binding transcription factors and is thought to promote transcription by acetylating the N-terminal tail of histone H3. The enzyme has indeed been shown to catalyse primarily the acetylation of H3 histone with only traces of H4 and H2A/B being acetylated. Non-acetylated H3 peptide or an H3 peptide that had been previously acetylated on K9 both serve as excellent substrates for HAG1-catalyzed acetylation. However, prior acetylation of H3 lysine 14 blocks radioactive acetylation of the peptide by HAG1. HAG1 is specific for histone H3 lysine 14.; histone acetyltransferase of the GNAT family 1 (HAG1); FUNCTIONS IN: histone acetyltransferase activity, DNA binding, H3 histone acetyltransferase activity; INVOLVED IN: flower development, histone acetylation, response to light stimulus, positive regulation of transcription, root morphogenesis; LOCATED IN: histone acetyltransferase complex, nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Bromodomain, conserved site (InterPro:IPR018359), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: nuclear protein X1 (TAIR:AT5G63320.1); Has 13698 Blast hits to 5805 proteins in 367 species: Archae - 4; Bacteria - 1437; Metazoa - 4852; Fungi - 1484; Plants - 516; Viruses - 1; Other Eukaryotes - 5404 (source: NCBI BLink). & (reliability: 620.0) & (original description: no original description)","protein_coding" "evm.model.tig00021534.5","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00021612.50","No alias","Cyanophora paradoxa","(at4g21530 : 166.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); Has 2387 Blast hits to 1893 proteins in 265 species: Archae - 2; Bacteria - 820; Metazoa - 693; Fungi - 413; Plants - 211; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink). & (reliability: 332.0) & (original description: no original description)","protein_coding" "evm.model.tig00021621.26","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "Glyma.01G008500","No alias","Glycine max","NADP-malic enzyme 4","protein_coding" "Glyma.01G042400","No alias","Glycine max","Protein kinase superfamily protein","protein_coding" "Glyma.01G146400","No alias","Glycine max","novel interactor of JAZ","protein_coding" "Glyma.01G170600","No alias","Glycine max","FG-GAP repeat-containing protein","protein_coding" "Glyma.01G228200","No alias","Glycine max","Homeodomain-like superfamily protein","protein_coding" "Glyma.01G228900","No alias","Glycine max","exportin 1A","protein_coding" "Glyma.02G011100","No alias","Glycine max","heme binding","protein_coding" "Glyma.02G071900","No alias","Glycine max","TCP-1/cpn60 chaperonin family protein","protein_coding" "Glyma.02G095200","No alias","Glycine max","beta-hexosaminidase 1","protein_coding" "Glyma.02G160100","No alias","Glycine max","Enhancer of polycomb-like transcription factor protein","protein_coding" "Glyma.02G162000","No alias","Glycine max","WW domain-containing protein","protein_coding" "Glyma.02G251100","No alias","Glycine max","delta 1-pyrroline-5-carboxylate synthase 2","protein_coding" "Glyma.02G251700","No alias","Glycine max","nucleotide binding;protein binding","protein_coding" "Glyma.02G297300","No alias","Glycine max","FRIGIDA-like protein","protein_coding" "Glyma.03G097000","No alias","Glycine max","autophagocytosis-associated family protein","protein_coding" "Glyma.03G097700","No alias","Glycine max","Protein of unknown function (DUF3550/UPF0682)","protein_coding" "Glyma.03G107300","No alias","Glycine max","actin-related protein 4","protein_coding" "Glyma.03G153902","No alias","Glycine max","GTP-binding family protein","protein_coding" "Glyma.03G156301","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding" "Glyma.03G157900","No alias","Glycine max","Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein","protein_coding" "Glyma.03G209800","No alias","Glycine max","B-box type zinc finger protein with CCT domain","protein_coding" "Glyma.03G214800","No alias","Glycine max","alpha/beta-Hydrolases superfamily protein","protein_coding" "Glyma.04G089200","No alias","Glycine max","sucrose transporter 4","protein_coding" "Glyma.04G097100","No alias","Glycine max","phosphoenolpyruvate carboxylase-related kinase 2","protein_coding" "Glyma.04G155900","No alias","Glycine max","serine carboxypeptidase-like 29","protein_coding" "Glyma.04G188000","No alias","Glycine max","plant intracellular ras group-related LRR 9","protein_coding" "Glyma.04G192200","No alias","Glycine max","retinoblastoma-related 1","protein_coding" "Glyma.04G192600","No alias","Glycine max","Galactose oxidase/kelch repeat superfamily protein","protein_coding" "Glyma.04G204500","No alias","Glycine max","Protein prenylyltransferase superfamily protein","protein_coding" "Glyma.05G003500","No alias","Glycine max","embryo defective 3012","protein_coding" "Glyma.05G026600","No alias","Glycine max","Protein of unknown function (DUF3223)","protein_coding" "Glyma.05G033200","No alias","Glycine max","Function unknown","protein_coding" "Glyma.05G047300","No alias","Glycine max","Function unknown","protein_coding" "Glyma.05G072300","No alias","Glycine max","Function unknown","protein_coding" "Glyma.05G089400","No alias","Glycine max","potassium channel tetramerisation domain-containing protein / pentapeptide repeat-containing protein","protein_coding" "Glyma.05G115700","No alias","Glycine max","RING domain ligase2","protein_coding" "Glyma.05G123000","No alias","Glycine max","WRKY DNA-binding protein 9","protein_coding" "Glyma.05G146100","No alias","Glycine max","RNA helicase family protein","protein_coding" "Glyma.05G160032","No alias","Glycine max","Transducin/WD40 repeat-like superfamily protein","protein_coding" "Glyma.05G176233","No alias","Glycine max","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding" "Glyma.05G182300","No alias","Glycine max","Function unknown","protein_coding" "Glyma.05G209300","No alias","Glycine max","Disease resistance protein (TIR-NBS class)","protein_coding" "Glyma.05G212100","No alias","Glycine max","Calcineurin-like metallo-phosphoesterase superfamily protein","protein_coding" "Glyma.05G232100","No alias","Glycine max","Serinc-domain containing serine and sphingolipid biosynthesis protein","protein_coding" "Glyma.05G232200","No alias","Glycine max","NSP (nuclear shuttle protein)-interacting GTPase","protein_coding" "Glyma.06G059300","No alias","Glycine max","Ankyrin repeat family protein","protein_coding" "Glyma.06G126900","No alias","Glycine max","Protein of unknown function DUF455","protein_coding" "Glyma.06G222100","No alias","Glycine max","Protein of unknown function (DUF3414)","protein_coding" "Glyma.06G255000","No alias","Glycine max","ubiquitin-specific protease 14","protein_coding" "Glyma.06G308700","No alias","Glycine max","replication factor C1","protein_coding" "Glyma.07G007200","No alias","Glycine max","Homeodomain-like/winged-helix DNA-binding family protein","protein_coding" "Glyma.07G015300","No alias","Glycine max","protein kinase family protein / peptidoglycan-binding LysM domain-containing protein","protein_coding" "Glyma.07G033400","No alias","Glycine max","Protein of unknown function (DUF2921)","protein_coding" "Glyma.07G119900","No alias","Glycine max","Vacuolar sorting protein 39","protein_coding" "Glyma.07G144300","No alias","Glycine max","RING/U-box superfamily protein","protein_coding" "Glyma.07G189500","No alias","Glycine max","sugar transporter 1","protein_coding" "Glyma.07G213200","No alias","Glycine max","Class I glutamine amidotransferase-like superfamily protein","protein_coding" "Glyma.07G250200","No alias","Glycine max","tonneau 2 (TON2)","protein_coding" "Glyma.08G006400","No alias","Glycine max","TUDOR-SN protein 1","protein_coding" "Glyma.08G007500","No alias","Glycine max","DCD (Development and Cell Death) domain protein","protein_coding" "Glyma.08G050200","No alias","Glycine max","DEA(D/H)-box RNA helicase family protein","protein_coding" "Glyma.08G102200","No alias","Glycine max","Function unknown","protein_coding" "Glyma.08G103100","No alias","Glycine max","ARM repeat superfamily protein","protein_coding" "Glyma.08G112600","No alias","Glycine max","FAD-binding Berberine family protein","protein_coding" "Glyma.08G133700","No alias","Glycine max","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding" "Glyma.08G212500","No alias","Glycine max","blue-copper-binding protein","protein_coding" "Glyma.08G257600","No alias","Glycine max","ARF GTPase-activating protein","protein_coding" "Glyma.09G010000","No alias","Glycine max","fumarylacetoacetase, putative","protein_coding" "Glyma.09G023300","No alias","Glycine max","Intron maturase, type II family protein","protein_coding" "Glyma.09G040800","No alias","Glycine max","MLP-like protein 423","protein_coding" "Glyma.09G173500","No alias","Glycine max","prohibitin 2","protein_coding" "Glyma.10G076700","No alias","Glycine max","arginine/serine-rich zinc knuckle-containing protein 33","protein_coding" "Glyma.10G082100","No alias","Glycine max","embryo defective 2016","protein_coding" "Glyma.10G091000","No alias","Glycine max","alpha-N-acetylglucosaminidase family / NAGLU family","protein_coding" "Glyma.10G120900","No alias","Glycine max","ubiquitin-specific protease 13","protein_coding" "Glyma.10G161400","No alias","Glycine max","NIMA-related serine/threonine kinase 1","protein_coding" "Glyma.10G165200","No alias","Glycine max","Plant protein of unknown function (DUF946)","protein_coding" "Glyma.10G200000","No alias","Glycine max","UDP-Glycosyltransferase superfamily protein","protein_coding" "Glyma.10G201800","No alias","Glycine max","Protein with RING/U-box and TRAF-like domains","protein_coding" "Glyma.10G217000","No alias","Glycine max","calcium-dependent protein kinase 4","protein_coding" "Glyma.10G223800","No alias","Glycine max","Basic-leucine zipper (bZIP) transcription factor family protein","protein_coding" "Glyma.10G245500","No alias","Glycine max","TESMIN/TSO1-like CXC 2","protein_coding" "Glyma.10G291300","No alias","Glycine max","Cleavage and polyadenylation specificity factor (CPSF) A subunit protein","protein_coding" "Glyma.11G028700","No alias","Glycine max","armadillo repeat kinesin 3","protein_coding" "Glyma.11G111800","No alias","Glycine max","Subtilase family protein","protein_coding" "Glyma.11G138000","No alias","Glycine max","SCARECROW-like 14","protein_coding" "Glyma.11G154000","No alias","Glycine max","sensitivity to red light reduced protein (SRR1)","protein_coding" "Glyma.11G177628","No alias","Glycine max","Pleckstrin homology (PH) and lipid-binding START domains-containing protein","protein_coding" "Glyma.12G007600","No alias","Glycine max","actin-related protein 7","protein_coding" "Glyma.12G024600","No alias","Glycine max","Protein of unknown function (DUF3414)","protein_coding" "Glyma.12G092200","No alias","Glycine max","Function unknown","protein_coding" "Glyma.12G096100","No alias","Glycine max","replication factor C1","protein_coding" "Glyma.12G108400","No alias","Glycine max","STRUBBELIG-receptor family 3","protein_coding" "Glyma.12G191900","No alias","Glycine max","replication factor C1","protein_coding" "Glyma.13G027800","No alias","Glycine max","ubiquitin-specific protease 13","protein_coding" "Glyma.13G028100","No alias","Glycine max","disease resistance protein (TIR-NBS-LRR class), putative","protein_coding" "Glyma.13G045800","No alias","Glycine max","Ribosomal protein S7e family protein","protein_coding" "Glyma.13G050200","No alias","Glycine max","NSP-interacting kinase 1","protein_coding" "Glyma.13G053500","No alias","Glycine max","Function unknown","protein_coding" "Glyma.13G071900","No alias","Glycine max","NB-ARC domain-containing disease resistance protein","protein_coding" "Glyma.13G134200","No alias","Glycine max","Pectin lyase-like superfamily protein","protein_coding" "Glyma.13G161700","No alias","Glycine max","calmodulin-binding receptor-like cytoplasmic kinase 3","protein_coding" "Glyma.13G187800","No alias","Glycine max","SAC3/GANP/Nin1/mts3/eIF-3 p25 family","protein_coding" "Glyma.13G191700","No alias","Glycine max","methyltransferases;copper ion binding","protein_coding" "Glyma.13G222500","No alias","Glycine max","bromodomain and extraterminal domain protein 9","protein_coding" "Glyma.13G268500","No alias","Glycine max","NHL domain-containing protein","protein_coding" "Glyma.13G308500","No alias","Glycine max","glutamate receptor 5","protein_coding" "Glyma.13G313700","No alias","Glycine max","Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family","protein_coding" "Glyma.13G326200","No alias","Glycine max","PDI-like 1-4","protein_coding" "Glyma.13G337400","No alias","Glycine max","SCARECROW-like 14","protein_coding" "Glyma.13G343600","No alias","Glycine max","farnesyltransferase A","protein_coding" "Glyma.13G346000","No alias","Glycine max","Protein of unknown function (DUF3755)","protein_coding" "Glyma.14G001900","No alias","Glycine max","isocitrate dehydrogenase 1","protein_coding" "Glyma.14G053200","No alias","Glycine max","secE/sec61-gamma protein transport protein","protein_coding" "Glyma.14G057100","No alias","Glycine max","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding" "Glyma.14G138300","No alias","Glycine max","arabinose kinase","protein_coding" "Glyma.14G193600","No alias","Glycine max","Function unknown","protein_coding" "Glyma.14G217100","No alias","Glycine max","Histone superfamily protein","protein_coding" "Glyma.15G048300","No alias","Glycine max","Lung seven transmembrane receptor family protein","protein_coding" "Glyma.15G177700","No alias","Glycine max","FRIGIDA interacting protein 1","protein_coding" "Glyma.15G236500","No alias","Glycine max","Transducin/WD40 repeat-like superfamily protein","protein_coding" "Glyma.15G255100","No alias","Glycine max","Function unknown","protein_coding" "Glyma.16G023600","No alias","Glycine max","auxin response factor 18","protein_coding" "Glyma.16G047800","No alias","Glycine max","SU(VAR)3-9 homolog 4","protein_coding" "Glyma.16G082400","No alias","Glycine max","Sec23/Sec24 protein transport family protein","protein_coding" "Glyma.16G123600","No alias","Glycine max","embryo defective 3006","protein_coding" "Glyma.16G208400","No alias","Glycine max","chloride channel C","protein_coding" "Glyma.17G037200","No alias","Glycine max","TATA binding protein associated factor 21kDa subunit","protein_coding" "Glyma.17G041100","No alias","Glycine max","HAD-superfamily hydrolase, subfamily IG, 5\'-nucleotidase","protein_coding" "Glyma.17G041700","No alias","Glycine max","chromatin remodeling factor18","protein_coding" "Glyma.17G097800","No alias","Glycine max","aldehyde dehydrogenase 12A1","protein_coding" "Glyma.17G154600","No alias","Glycine max","EYES ABSENT homolog","protein_coding" "Glyma.17G165900","No alias","Glycine max","WD-40 repeat family protein","protein_coding" "Glyma.17G175800","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding" "Glyma.17G183400","No alias","Glycine max","nuclear RNA polymerase A2","protein_coding" "Glyma.17G251100","No alias","Glycine max","Major facilitator superfamily protein","protein_coding" "Glyma.18G000500","No alias","Glycine max","ubiquitin-specific protease 2","protein_coding" "Glyma.18G009000","No alias","Glycine max","Function unknown","protein_coding" "Glyma.18G030800","No alias","Glycine max","Transport protein particle (TRAPP) component","protein_coding" "Glyma.18G093200","No alias","Glycine max","HIS HF","protein_coding" "Glyma.18G105600","No alias","Glycine max","BED zinc finger ;hAT family dimerisation domain","protein_coding" "Glyma.18G173000","No alias","Glycine max","ARM repeat superfamily protein","protein_coding" "Glyma.18G226600","No alias","Glycine max","Protein of unknown function (DUF674)","protein_coding" "Glyma.18G276600","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding" "Glyma.18G300200","No alias","Glycine max","glucan synthase-like 12","protein_coding" "Glyma.19G018100","No alias","Glycine max","Oxoglutarate/iron-dependent oxygenase","protein_coding" "Glyma.19G020800","No alias","Glycine max","Function unknown","protein_coding" "Glyma.19G100500","No alias","Glycine max","Function unknown","protein_coding" "Glyma.19G113200","No alias","Glycine max","ARM repeat superfamily protein","protein_coding" "Glyma.19G184800","No alias","Glycine max","phosphoadenosine phosphosulfate (PAPS) reductase family protein","protein_coding" "Glyma.20G058400","No alias","Glycine max","embryo defective 1381","protein_coding" "Glyma.20G122800","No alias","Glycine max","phosphatidyl serine synthase family protein","protein_coding" "Glyma.20G136900","No alias","Glycine max","Function unknown","protein_coding" "Glyma.20G144400","No alias","Glycine max","time for coffee","protein_coding" "GRMZM2G018800","No alias","Zea mays","CLIP-associated protein","protein_coding" "GRMZM2G042607","No alias","Zea mays","galactosyltransferase1","protein_coding" "GRMZM2G068331","No alias","Zea mays","RING/FYVE/PHD zinc finger superfamily protein","protein_coding" "GRMZM2G084759","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G305093","No alias","Zea mays","Plant basic secretory protein (BSP) family protein","protein_coding" "GRMZM2G313027","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G313737","No alias","Zea mays","alpha/beta-Hydrolases superfamily protein","protein_coding" "GRMZM2G325350","No alias","Zea mays","Mitochondrial transcription termination factor family protein","protein_coding" "GRMZM2G335930","No alias","Zea mays","DNAse I-like superfamily protein","protein_coding" "GRMZM2G352274","No alias","Zea mays","uv-b-insensitive 4","protein_coding" "GRMZM2G366795","No alias","Zea mays","WRKY family transcription factor","protein_coding" "GRMZM2G393014","No alias","Zea mays","isopentenyltransferase 1","protein_coding" "GRMZM2G396455","No alias","Zea mays","UDP-Glycosyltransferase superfamily protein","protein_coding" "GRMZM2G412630","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G453807","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G457381","No alias","Zea mays","replication factor C1","protein_coding" "GRMZM2G529808","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G579843","No alias","Zea mays","Function unknown","protein_coding" "GRMZM5G840740","No alias","Zea mays","Function unknown","protein_coding" "GRMZM5G865818","No alias","Zea mays","Function unknown","protein_coding" "GRMZM6G495931","No alias","Zea mays","Protein kinase superfamily protein","protein_coding" "HORVU1Hr1G002310.3","No alias","Hordeum vulgare","component *(uL2m) of large mitoribosomal-subunit proteome","protein_coding" "HORVU1Hr1G015270.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU1Hr1G079900.2","No alias","Hordeum vulgare","flap structure-specific endonuclease *(FEN1) & flap structure-specific endonuclease *(FEN1)","protein_coding" "HORVU1Hr1G083000.1","No alias","Hordeum vulgare","PP6 phosphatase & EC_3.1 hydrolase acting on ester bond","protein_coding" "HORVU2Hr1G005690.10","No alias","Hordeum vulgare","tRNA uridine-methyltransferase *(TRM2) & EC_2.1 transferase transferring one-carbon group","protein_coding" "HORVU2Hr1G019570.1","No alias","Hordeum vulgare","tRNA cytidine acetyltransferase adaptor protein","protein_coding" "HORVU2Hr1G024160.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU2Hr1G037750.1","No alias","Hordeum vulgare","DLSV protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU2Hr1G041780.2","No alias","Hordeum vulgare","regulatory protein *(PATROL1) involved in cellulose synthase trafficking","protein_coding" "HORVU2Hr1G107150.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU2Hr1G107250.1","No alias","Hordeum vulgare","EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU2Hr1G112320.1","No alias","Hordeum vulgare","phosphoinositide transfer protein *(SFH)","protein_coding" "HORVU2Hr1G114940.3","No alias","Hordeum vulgare","cyclic nucleotide-gated cation channel *(CNGC)","protein_coding" "HORVU2Hr1G119720.1","No alias","Hordeum vulgare","dihydroorotate dehydrogenase *(PYRD) & EC_1.3 oxidoreductase acting on CH-CH group of donor","protein_coding" "HORVU3Hr1G014890.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU3Hr1G033390.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU3Hr1G036870.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU3Hr1G055830.5","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU3Hr1G068620.14","No alias","Hordeum vulgare","hexokinase","protein_coding" "HORVU3Hr1G070960.2","No alias","Hordeum vulgare","Golgin-type membrane tethering protein *(GC1)","protein_coding" "HORVU4Hr1G014720.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU4Hr1G062760.3","No alias","Hordeum vulgare","RLCK-XI receptor-like protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU4Hr1G073580.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G006220.1","No alias","Hordeum vulgare","actin cytoskeleton connecting factor *(SINE)","protein_coding" "HORVU5Hr1G007960.1","No alias","Hordeum vulgare","cofactor of post-CCT Tubulin folding pathway *(TFC-A)","protein_coding" "HORVU5Hr1G018930.3","No alias","Hordeum vulgare","clade D phosphatase","protein_coding" "HORVU5Hr1G019730.1","No alias","Hordeum vulgare","E3 ubiquitin ligase *(RBR-Helicase)","protein_coding" "HORVU5Hr1G041240.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G075870.1","No alias","Hordeum vulgare","ASK-type linker component of SCF E3 ubiquitin ligase complexes","protein_coding" "HORVU5Hr1G077430.5","No alias","Hordeum vulgare","DLSV protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU5Hr1G080730.4","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G094430.8","No alias","Hordeum vulgare","P1B-type heavy metal cation-transporting ATPase *(HMA)","protein_coding" "HORVU5Hr1G096190.11","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G101000.3","No alias","Hordeum vulgare","RNA editing factor *(DEK36)","protein_coding" "HORVU5Hr1G117610.10","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU6Hr1G009890.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU6Hr1G020420.1","No alias","Hordeum vulgare","scaffold nucleoporin of nuclear pore complex *(NUP160)","protein_coding" "HORVU7Hr1G060360.1","No alias","Hordeum vulgare","component *(MSD1) of Katanin-recruiting microtubule-anchoring complex","protein_coding" "HORVU7Hr1G063030.9","No alias","Hordeum vulgare","endoribonuclease *(RNase E)","protein_coding" "HORVU7Hr1G091790.1","No alias","Hordeum vulgare","component *(RFC1) of PCNA sliding clamp loader complex","protein_coding" "Kfl00001_0690","kfl00001_0690_v1.1","Klebsormidium nitens","(at5g62410 : 1028.0) SMC2-1 (SMC2); structural maintenance of chromosomes 2 (SMC2); FUNCTIONS IN: transporter activity; INVOLVED IN: chromosome organization; LOCATED IN: condensin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: Structural maintenance of chromosomes (SMC) family protein (TAIR:AT3G47460.1); Has 126046 Blast hits to 65003 proteins in 3391 species: Archae - 1784; Bacteria - 23628; Metazoa - 52968; Fungi - 10094; Plants - 6737; Viruses - 431; Other Eukaryotes - 30404 (source: NCBI BLink). & (reliability: 2056.0) & (original description: no original description)","protein_coding" "Kfl00003_0170","kfl00003_0170_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00007_0060","kfl00007_0060_v1.1","Klebsormidium nitens","(at5g01630 : 307.0) Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with with both Rad51 and Dss1(I) or both Dmc1 and Dss1(I) in a tripartite complex.; BRCA2-like B (BRCA2B); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BREAST CANCER 2 like 2A (TAIR:AT4G00020.1); Has 281 Blast hits to 210 proteins in 91 species: Archae - 0; Bacteria - 4; Metazoa - 134; Fungi - 18; Plants - 61; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). & (reliability: 614.0) & (original description: no original description)","protein_coding" "Kfl00007_0070","kfl00007_0070_v1.1","Klebsormidium nitens","(at1g59600 : 87.0) ZCW7; Has 136 Blast hits to 136 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 174.0) & (original description: no original description)","protein_coding" "Kfl00009_0220","kfl00009_0220_v1.1","Klebsormidium nitens","(at3g63340 : 237.0) Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein serine/threonine phosphatase activity, protein kinase activity, catalytic activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein phosphatase 2C-related (InterPro:IPR001932), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), Protein phosphatase 2C (InterPro:IPR015655); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G63320.1). & (reliability: 474.0) & (original description: no original description)","protein_coding" "Kfl00015_0230","kfl00015_0230_v1.1","Klebsormidium nitens",""(at4g10100 : 90.1) molybdenum cofactor synthesis family protein, similar to Molybdenum cofactor synthesis protein 2 small subunit (Molybdopterin- synthase small subunit) (MOCS2A) (MOCO1-A) (Swiss-Prot:O96033) (Homo sapiens); contains TIGRFAM TIGR01682: molybdopterin converting factor, subunit 1; sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.; ""co-factor for nitrate, reductase and xanthine dehydrogenase 7"" (CNX7); CONTAINS InterPro DOMAIN/s: ThiamineS (InterPro:IPR003749), Molybdopterin converting factor, subunit 1 (InterPro:IPR010034), Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp (InterPro:IPR016155), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); Has 1000 Blast hits to 1000 proteins in 381 species: Archae - 21; Bacteria - 814; Metazoa - 52; Fungi - 2; Plants - 54; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). & (reliability: 180.2) & (original description: no original description)"","protein_coding" "Kfl00016_0290","kfl00016_0290_v1.1","Klebsormidium nitens","(at2g42580 : 276.0) Encodes a member of the TTL family and contains a thioredoxin like domain and three tandom TPRs. Interacts physically with BRL2/VH1 and appears to play a role in brassiosteroid and auxin signaling.; tetratricopetide-repeat thioredoxin-like 3 (TTL3); FUNCTIONS IN: binding; INVOLVED IN: brassinosteroid mediated signaling pathway, auxin mediated signaling pathway, leaf vascular tissue pattern formation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide TPR-1 (InterPro:IPR001440), Thioredoxin fold (InterPro:IPR012335), Tetratricopeptide-like helical (InterPro:IPR011990), Thioredoxin domain (InterPro:IPR013766), Tetratricopeptide repeat-containing (InterPro:IPR013026), Thioredoxin-like fold (InterPro:IPR012336), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopetide-repeat thioredoxin-like 4 (TAIR:AT3G58620.1); Has 21212 Blast hits to 11305 proteins in 1032 species: Archae - 491; Bacteria - 3820; Metazoa - 5890; Fungi - 2224; Plants - 2157; Viruses - 6; Other Eukaryotes - 6624 (source: NCBI BLink). & (reliability: 538.0) & (original description: no original description)","protein_coding" "Kfl00019_0280","kfl00019_0280_v1.1","Klebsormidium nitens","(at1g04950 : 451.0) Encodes one of two Arabidopsis proteins with significant similarity to the histone fold TBP-associated factor TAF6. Mutants are embryo lethal and transmission of the mutant allele through the male gametophyte is significantly reduced. This is due to reduced pollen tube growth of the mutant.; TATA BOX ASSOCIATED FACTOR II 59 (TAFII59); FUNCTIONS IN: RNA polymerase II transcription factor activity, DNA binding, transcription initiation factor activity; INVOLVED IN: pollen tube growth, transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1546 (InterPro:IPR011442), Histone-fold (InterPro:IPR009072), TATA box binding protein associated factor (TAF) (InterPro:IPR004823); BEST Arabidopsis thaliana protein match is: TBP-ASSOCIATED FACTOR 6B (TAIR:AT1G54360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 902.0) & (original description: no original description)","protein_coding" "Kfl00021_0460","kfl00021_0460_v1.1","Klebsormidium nitens","(at2g39550 : 276.0) encodes the beta subunit of geranylgeranyl transferase (GGT-IB), involved in both ABA-mediated and auxin signaling pathways.; PGGT-I; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase beta subunit 1 (TAIR:AT5G12210.1); Has 1518 Blast hits to 1317 proteins in 251 species: Archae - 0; Bacteria - 20; Metazoa - 603; Fungi - 437; Plants - 177; Viruses - 0; Other Eukaryotes - 281 (source: NCBI BLink). & (q04903|pftb_pea : 83.2) Protein farnesyltransferase subunit beta (EC 2.5.1.58) (CAAX farnesyltransferase subunit beta) (RAS proteins prenyltransferase beta) (FTase-beta) - Pisum sativum (Garden pea) & (reliability: 552.0) & (original description: no original description)","protein_coding" "Kfl00024_0500","kfl00024_0500_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00028_0260","kfl00028_0260_v1.1","Klebsormidium nitens","(at2g44580 : 266.0) zinc ion binding; CONTAINS InterPro DOMAIN/s: Sister chromatid cohesion protein DCC1 (InterPro:IPR019128); Has 214 Blast hits to 211 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 49; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 532.0) & (original description: no original description)","protein_coding" "Kfl00028_0420","kfl00028_0420_v1.1","Klebsormidium nitens","(at3g15550 : 153.0) unknown protein; Has 25732 Blast hits to 16979 proteins in 961 species: Archae - 144; Bacteria - 1801; Metazoa - 12681; Fungi - 1868; Plants - 912; Viruses - 94; Other Eukaryotes - 8232 (source: NCBI BLink). & (reliability: 306.0) & (original description: no original description)","protein_coding" "Kfl00029_0110","kfl00029_0110_v1.1","Klebsormidium nitens","(at3g52990 : 373.0) Pyruvate kinase family protein; FUNCTIONS IN: pyruvate kinase activity, magnesium ion binding, potassium ion binding, catalytic activity; INVOLVED IN: glycolysis; LOCATED IN: membrane; EXPRESSED IN: guard cell, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: Pyruvate kinase family protein (TAIR:AT2G36580.1); Has 9560 Blast hits to 9533 proteins in 2700 species: Archae - 164; Bacteria - 5966; Metazoa - 522; Fungi - 215; Plants - 538; Viruses - 0; Other Eukaryotes - 2155 (source: NCBI BLink). & (q42806|kpyc_soybn : 311.0) Pyruvate kinase, cytosolic isozyme (EC 2.7.1.40) (PK) - Glycine max (Soybean) & (reliability: 746.0) & (original description: no original description)","protein_coding" "Kfl00031_0310","kfl00031_0310_v1.1","Klebsormidium nitens","(at2g05210 : 102.0) Encodes AtPOT1a, an accessory factor for telomerase required for positive telomere length regulation. Note on nomenclature: different names have been given to Arabidopsis POT-like genes (Kuchar and Fajkus, 2004; Shakirov et al, 2005; Tani and Murata, 2005). According to a unifying nomenclature (Surovtseva et al, 2007), At2g05210 (previously named AtPOT1) is designated AtPOT1a, while At5g06310 (previously named AtPOT2) is designated AtPOT1b.; Protection of Telomeres 1a (AtPOT1a); CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Telomere end binding protein (InterPro:IPR011564); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G06310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description)","protein_coding" "Kfl00031_0500","kfl00031_0500_v1.1","Klebsormidium nitens","(at5g41790 : 99.4) encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light.; COP1-interactive protein 1 (CIP1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of protein import into nucleus; LOCATED IN: cytoskeleton, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G64330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 198.8) & (original description: no original description)","protein_coding" "Kfl00036_g44","kfl00036_g44_v1.1","Klebsormidium nitens","(at2g01440 : 464.0) DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: ATP-dependent DNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA repair, DNA recombination; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA helicase, ATP-dependent, RecG (InterPro:IPR004609), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box helicase, putative (TAIR:AT3G02060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 928.0) & (original description: no original description)","protein_coding" "Kfl00038_0210","kfl00038_0210_v1.1","Klebsormidium nitens","(at3g27120 : 445.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27130.1); Has 33109 Blast hits to 30842 proteins in 3139 species: Archae - 1459; Bacteria - 13342; Metazoa - 4781; Fungi - 3652; Plants - 2738; Viruses - 26; Other Eukaryotes - 7111 (source: NCBI BLink). & (q96372|cdc48_capan : 131.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 890.0) & (original description: no original description)","protein_coding" "Kfl00040_0090","kfl00040_0090_v1.1","Klebsormidium nitens","(at3g49160 : 420.0) Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.; pyruvate kinase family protein; FUNCTIONS IN: pyruvate kinase activity, magnesium ion binding, potassium ion binding, catalytic activity; INVOLVED IN: glycolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: Pyruvate kinase family protein (TAIR:AT5G63680.1); Has 14581 Blast hits to 9515 proteins in 2692 species: Archae - 258; Bacteria - 9751; Metazoa - 816; Fungi - 346; Plants - 707; Viruses - 0; Other Eukaryotes - 2703 (source: NCBI BLink). & (q40546|kpyg_tobac : 86.7) Pyruvate kinase isozyme G, chloroplast precursor (EC 2.7.1.40) - Nicotiana tabacum (Common tobacco) & (reliability: 840.0) & (original description: no original description)","protein_coding" "Kfl00045_0380","kfl00045_0380_v1.1","Klebsormidium nitens","(at5g63420 : 749.0) embryo defective 2746 (emb2746); FUNCTIONS IN: hydrolase activity, DNA binding, catalytic activity; INVOLVED IN: metabolic process, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108), Beta-lactamase-like (InterPro:IPR001279), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G38250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1498.0) & (original description: no original description)","protein_coding" "Kfl00046_0110","kfl00046_0110_v1.1","Klebsormidium nitens","(at1g48310 : 451.0) chromatin remodeling factor18 (CHR18); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (TAIR:AT5G07810.1); Has 16435 Blast hits to 14312 proteins in 1741 species: Archae - 101; Bacteria - 4551; Metazoa - 3441; Fungi - 3785; Plants - 1315; Viruses - 143; Other Eukaryotes - 3099 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 120.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 902.0) & (original description: no original description)","protein_coding" "Kfl00049_0150","kfl00049_0150_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00050_0180","kfl00050_0180_v1.1","Klebsormidium nitens","(at1g27880 : 512.0) DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT4G35740.1); Has 41244 Blast hits to 39032 proteins in 2984 species: Archae - 762; Bacteria - 21282; Metazoa - 5401; Fungi - 4173; Plants - 3671; Viruses - 588; Other Eukaryotes - 5367 (source: NCBI BLink). & (reliability: 1024.0) & (original description: no original description)","protein_coding" "Kfl00054_0235","kfl00054_0235_v1.1","Klebsormidium nitens","(at5g42480 : 110.0) Shows homology to the cyanobacterial cell division protein Ftn2, mutant only has two mesophyll cell chloroplasts. Protein was localized to a ring at the center of the chloroplasts. Probably involved in functions in the assembly and/or stabilization of the plastid-dividing FtsZ ring, inhibiting FtsZ filament formation in the chloroplast.; ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6 (ARC6); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, chloroplast fission, chloroplast organization; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: paralog of ARC6 (TAIR:AT3G19180.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 220.0) & (original description: no original description)","protein_coding" "Kfl00055_0170","kfl00055_0170_v1.1","Klebsormidium nitens","(at3g57060 : 412.0) binding; FUNCTIONS IN: binding; INVOLVED IN: mitosis, chromosome condensation; LOCATED IN: nucleus, condensin complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Non-SMC condensin subunit, XCAP-D2/Cnd1 (InterPro:IPR007673), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT4G15890.1). & (reliability: 824.0) & (original description: no original description)","protein_coding" "Kfl00057_0090","kfl00057_0090_v1.1","Klebsormidium nitens","(at2g22140 : 132.0) Forms a complex with MUS81 that functions as endonuclease in DNA recombination and repair processes.; essential meiotic endonuclease 1B (EME1B); CONTAINS InterPro DOMAIN/s: ERCC4 domain (InterPro:IPR006166); BEST Arabidopsis thaliana protein match is: essential meiotic endonuclease 1A (TAIR:AT2G21800.1); Has 542 Blast hits to 486 proteins in 142 species: Archae - 0; Bacteria - 42; Metazoa - 170; Fungi - 104; Plants - 48; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). & (reliability: 264.0) & (original description: no original description)","protein_coding" "Kfl00059_0100","kfl00059_0100_v1.1","Klebsormidium nitens","(at3g03710 : 796.0) Encodes a chloroplast polynucleotide phosphorylase (PNPase). Involved in response to phosphorus (P) starvation. Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings.; resistant to inhibition with FSM 10 (RIF10); FUNCTIONS IN: polyribonucleotide nucleotidyltransferase activity, 3'-5'-exoribonuclease activity, RNA binding, nucleic acid binding; INVOLVED IN: chlorophyll biosynthetic process, cellular response to phosphate starvation, xanthophyll biosynthetic process, carotene biosynthetic process, negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type (InterPro:IPR015848), K Homology (InterPro:IPR004087), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), K Homology, type 1 (InterPro:IPR004088), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Polyribonucleotide nucleotidyltransferase (InterPro:IPR012162); BEST Arabidopsis thaliana protein match is: polyribonucleotide nucleotidyltransferase, putative (TAIR:AT5G14580.1); Has 29137 Blast hits to 25785 proteins in 2865 species: Archae - 377; Bacteria - 19207; Metazoa - 333; Fungi - 67; Plants - 272; Viruses - 0; Other Eukaryotes - 8881 (source: NCBI BLink). & (reliability: 1592.0) & (original description: no original description)","protein_coding" "Kfl00060_0360","kfl00060_0360_v1.1","Klebsormidium nitens","(at4g02460 : 365.0) Encodes a protein similar to PMS1 in yeast, a member of the family of eukaryotic MutL homologs. The protein appears to play a role in DNA mismatch repair and in the suppression of somatic homeologous recombination.; POSTMEIOTIC SEGREGATION 1 (PMS1); FUNCTIONS IN: mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, fruit development, seed development, DNA recombination, pollen development; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair, conserved site (InterPro:IPR014762), ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA mismatch repair protein, C-terminal (InterPro:IPR013507), MutL, C-terminal, dimerisation (InterPro:IPR014790), DNA mismatch repair protein, N-terminal (InterPro:IPR014763), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), DNA mismatch repair protein (InterPro:IPR002099), Post Meiotic Segregation 2 (InterPro:IPR015434), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: MUTL-homologue 1 (TAIR:AT4G09140.1); Has 10471 Blast hits to 7086 proteins in 2377 species: Archae - 138; Bacteria - 7516; Metazoa - 568; Fungi - 666; Plants - 148; Viruses - 0; Other Eukaryotes - 1435 (source: NCBI BLink). & (reliability: 730.0) & (original description: no original description)","protein_coding" "Kfl00061_0280","kfl00061_0280_v1.1","Klebsormidium nitens","(at1g08260 : 1660.0) Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.; TILTED 1 (TIL1); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: positive regulation of S phase of mitotic cell cycle, negative regulation of long-day photoperiodism, flowering, embryo development ending in seed dormancy; LOCATED IN: apoplast, epsilon DNA polymerase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), Domain of unknown function DUF1744 (InterPro:IPR013697), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134); BEST Arabidopsis thaliana protein match is: DNA polymerase epsilon catalytic subunit (TAIR:AT2G27120.1); Has 2011 Blast hits to 1700 proteins in 652 species: Archae - 331; Bacteria - 603; Metazoa - 305; Fungi - 291; Plants - 83; Viruses - 58; Other Eukaryotes - 340 (source: NCBI BLink). & (reliability: 3320.0) & (original description: no original description)","protein_coding" "Kfl00062_0110","kfl00062_0110_v1.1","Klebsormidium nitens","(at4g01160 : 99.8) BTB/POZ/Kelch-associated protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/Kelch-associated (InterPro:IPR011705), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: POZ/BTB containin G-protein 1 (TAIR:AT3G61600.2); Has 3481 Blast hits to 3463 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 3173; Fungi - 4; Plants - 136; Viruses - 49; Other Eukaryotes - 119 (source: NCBI BLink). & (reliability: 199.6) & (original description: no original description)","protein_coding" "Kfl00063_0180","kfl00063_0180_v1.1","Klebsormidium nitens","(at1g65470 : 90.9) Chromatin Assembly Factor-1 (CAF-1) p150 subunit. Mutants have reduced heterochromatin content. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.; FASCIATA 1 (FAS1); FUNCTIONS IN: histone binding; INVOLVED IN: in 11 processes; LOCATED IN: chromatin assembly complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chromatin assembly factor 1 subunit A (InterPro:IPR022043). & (reliability: 181.8) & (original description: no original description)","protein_coding" "Kfl00065_0300","kfl00065_0300_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00066_0260","kfl00066_0260_v1.1","Klebsormidium nitens","(at5g15920 : 686.0) Encodes SMC5 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 5), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage.; structural maintenance of chromosomes 5 (SMC5); FUNCTIONS IN: ATP binding; INVOLVED IN: sister chromatid cohesion, chromosome segregation; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G61460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1372.0) & (original description: no original description)","protein_coding" "Kfl00066_0340","kfl00066_0340_v1.1","Klebsormidium nitens","(at3g42660 : 451.0) transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), Protein of unknown function DUF3639 (InterPro:IPR022100), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G23430.1); Has 41589 Blast hits to 20655 proteins in 706 species: Archae - 66; Bacteria - 8583; Metazoa - 14223; Fungi - 8894; Plants - 4578; Viruses - 3; Other Eukaryotes - 5242 (source: NCBI BLink). & (reliability: 902.0) & (original description: no original description)","protein_coding" "Kfl00067_0060","kfl00067_0060_v1.1","Klebsormidium nitens","(at2g01120 : 291.0) Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.; origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527). & (reliability: 582.0) & (original description: no original description)","protein_coding" "Kfl00069_0130","kfl00069_0130_v1.1","Klebsormidium nitens","(at5g22010 : 421.0) replication factor C1 (RFC1); FUNCTIONS IN: DNA clamp loader activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex, intracellular; CONTAINS InterPro DOMAIN/s: DNA replication factor RFC1, C-terminal (InterPro:IPR013725), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA replication factor C, large subunit (InterPro:IPR012178), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G04730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 842.0) & (original description: no original description)","protein_coding" "Kfl00072_0060","kfl00072_0060_v1.1","Klebsormidium nitens","(at1g57820 : 631.0) Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.; VARIANT IN METHYLATION 1 (VIM1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SRA-YDG (InterPro:IPR003105), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G57800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1262.0) & (original description: no original description)","protein_coding" "Kfl00076_0270","kfl00076_0270_v1.1","Klebsormidium nitens","(at2g32240 : 110.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). & (reliability: 212.0) & (original description: no original description)","protein_coding" "Kfl00078_0080","kfl00078_0080_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00080_0200","kfl00080_0200_v1.1","Klebsormidium nitens","(at1g70210 : 131.0) Encodes a D-type cyclin that physically interacts with CDC2A. Its expression is upregulated early during germination.; CYCLIN D1;1 (CYCD1;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: G1 phase of mitotic cell cycle, regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin D2;1 (TAIR:AT2G22490.1); Has 3455 Blast hits to 3453 proteins in 343 species: Archae - 0; Bacteria - 0; Metazoa - 1586; Fungi - 382; Plants - 1073; Viruses - 13; Other Eukaryotes - 401 (source: NCBI BLink). & (reliability: 262.0) & (original description: no original description)","protein_coding" "Kfl00085_0180","kfl00085_0180_v1.1","Klebsormidium nitens","(at4g00990 : 273.0) Transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G11950.1); Has 966 Blast hits to 671 proteins in 113 species: Archae - 0; Bacteria - 8; Metazoa - 538; Fungi - 54; Plants - 301; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). & (reliability: 546.0) & (original description: no original description)","protein_coding" "Kfl00086_0370","kfl00086_0370_v1.1","Klebsormidium nitens","(at3g05740 : 520.0) RECQ helicase l1 (RECQI1); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DNA helicase (RECQl4A) (TAIR:AT1G10930.1); Has 22913 Blast hits to 22836 proteins in 2673 species: Archae - 358; Bacteria - 13443; Metazoa - 2936; Fungi - 2132; Plants - 1261; Viruses - 9; Other Eukaryotes - 2774 (source: NCBI BLink). & (reliability: 1040.0) & (original description: no original description)","protein_coding" "Kfl00093_0040","kfl00093_0040_v1.1","Klebsormidium nitens","(at3g57660 : 885.0) Encodes a subunit of RNA polymerase I (aka RNA polymerase A).; nuclear RNA polymerase A1 (NRPA1); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), DNA-directed RNA pol I, largest subunit (InterPro:IPR015699), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1); Has 39638 Blast hits to 28014 proteins in 7318 species: Archae - 983; Bacteria - 11101; Metazoa - 5787; Fungi - 2930; Plants - 6395; Viruses - 781; Other Eukaryotes - 11661 (source: NCBI BLink). & (p60288|rpoc1_phypa : 102.0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) - Physcomitrella patens (Moss) & (reliability: 1770.0) & (original description: no original description)","protein_coding" "Kfl00094_0200","kfl00094_0200_v1.1","Klebsormidium nitens","(at5g52910 : 319.0) homolog of Drosophila timeless; TIMELESS (ATIM); CONTAINS InterPro DOMAIN/s: Timeless C-terminal (InterPro:IPR007725), Timeless protein (InterPro:IPR006906); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 638.0) & (original description: no original description)","protein_coding" "Kfl00095_0060","kfl00095_0060_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00100_0250","kfl00100_0250_v1.1","Klebsormidium nitens","(at1g67320 : 534.0) DNA primase, large subunit family; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, large subunit, eukaryotic (InterPro:IPR016558), DNA primase, large subunit, eukaryotic/archaeal (InterPro:IPR007238). & (reliability: 1068.0) & (original description: no original description)","protein_coding" "Kfl00106_0070","kfl00106_0070_v1.1","Klebsormidium nitens","(at5g16715 : 1236.0) embryo defective 2247 (EMB2247); FUNCTIONS IN: valine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Valyl-tRNA synthetase, class Ia (InterPro:IPR002303), Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Valyl-tRNA synthetase, class Ia, tRNA-binding arm (InterPro:IPR019499), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Valyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR019754); BEST Arabidopsis thaliana protein match is: valyl-tRNA synthetase / valine--tRNA ligase (VALRS) (TAIR:AT1G14610.1); Has 40467 Blast hits to 37894 proteins in 3157 species: Archae - 953; Bacteria - 21019; Metazoa - 839; Fungi - 772; Plants - 400; Viruses - 0; Other Eukaryotes - 16484 (source: NCBI BLink). & (reliability: 2472.0) & (original description: no original description)","protein_coding" "Kfl00108_0080","kfl00108_0080_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00109_0210","kfl00109_0210_v1.1","Klebsormidium nitens","(at5g64630 : 397.0) Chromatin Assembly Factor-1 (CAF-1) p60 subunit. Involved in organization of the shoot and root apical meristems. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.; FASCIATA 2 (FAS2); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of histone chaperone HIRA (TAIR:AT3G44530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p93107|pf20_chlre : 84.0) Flagellar WD repeat protein PF20 - Chlamydomonas reinhardtii & (reliability: 794.0) & (original description: no original description)","protein_coding" "Kfl00110_0200","kfl00110_0200_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00110_0220","kfl00110_0220_v1.1","Klebsormidium nitens","(at4g36760 : 643.0) Arabidopsis aminopeptidase P1; aminopeptidase P1 (APP1); FUNCTIONS IN: aminopeptidase activity, N-1-naphthylphthalamic acid binding; INVOLVED IN: auxin polar transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site (InterPro:IPR001131), Peptidase M24, structural domain (InterPro:IPR000994), Creatinase (InterPro:IPR000587); BEST Arabidopsis thaliana protein match is: Metallopeptidase M24 family protein (TAIR:AT3G05350.1); Has 10398 Blast hits to 10335 proteins in 2401 species: Archae - 277; Bacteria - 6310; Metazoa - 362; Fungi - 246; Plants - 146; Viruses - 0; Other Eukaryotes - 3057 (source: NCBI BLink). & (reliability: 1286.0) & (original description: no original description)","protein_coding" "Kfl00116_0030","kfl00116_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00117_0160","kfl00117_0160_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00121_0070","kfl00121_0070_v1.1","Klebsormidium nitens","(at4g33760 : 739.0) tRNA synthetase class II (D, K and N) family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast, membrane, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type (InterPro:IPR004524), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type, C-terminal (InterPro:IPR018153), GAD domain (InterPro:IPR004115); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 31429 Blast hits to 23398 proteins in 2969 species: Archae - 812; Bacteria - 21040; Metazoa - 874; Fungi - 1027; Plants - 329; Viruses - 0; Other Eukaryotes - 7347 (source: NCBI BLink). & (reliability: 1478.0) & (original description: no original description)","protein_coding" "Kfl00121_0170","kfl00121_0170_v1.1","Klebsormidium nitens","(at5g54260 : 676.0) DNA repair and meiotic recombination protein, component of MRE11 complex with RAD50 and NBS1; MEIOTIC RECOMBINATION 11 (MRE11); FUNCTIONS IN: hydrolase activity, manganese ion binding, protein serine/threonine phosphatase activity, exonuclease activity, endonuclease activity; INVOLVED IN: double-strand break repair, DNA metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), DNA repair exonuclease (InterPro:IPR003701), Mre11, DNA-binding (InterPro:IPR007281); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1352.0) & (original description: no original description)","protein_coding" "Kfl00125_0130","kfl00125_0130_v1.1","Klebsormidium nitens","(at1g63660 : 770.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1540.0) & (original description: no original description)","protein_coding" "Kfl00125_0180","kfl00125_0180_v1.1","Klebsormidium nitens","(at5g25150 : 443.0) Encodes a putative TATA-binding-protein associated factor TAF5. TAFs are subunits of the general transcription factor IID (TFIID).; TBP-associated factor 5 (TAF5); FUNCTIONS IN: transcription regulator activity, nucleotide binding; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: guard cell, root, inflorescence, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781), TFIID subunit, WD40-associated region (InterPro:IPR007582); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 114463 Blast hits to 42274 proteins in 991 species: Archae - 68; Bacteria - 11258; Metazoa - 46869; Fungi - 25620; Plants - 15010; Viruses - 3; Other Eukaryotes - 15635 (source: NCBI BLink). & (p93107|pf20_chlre : 112.0) Flagellar WD repeat protein PF20 - Chlamydomonas reinhardtii & (reliability: 886.0) & (original description: no original description)","protein_coding" "Kfl00128_0250","kfl00128_0250_v1.1","Klebsormidium nitens","(at5g43080 : 138.0) Cyclin A3;1 (CYCA3;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: cyclin-dependent protein kinase 3;2 (TAIR:AT1G47210.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p25010|ccnal_dauca : 132.0) G2/mitotic-specific cyclin C13-1 (A-like cyclin) (Fragment) - Daucus carota (Carrot) & (reliability: 276.0) & (original description: no original description)","protein_coding" "Kfl00130_0160","kfl00130_0160_v1.1","Klebsormidium nitens","(at5g11100 : 194.0) SYTD; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G05500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 388.0) & (original description: no original description)","protein_coding" "Kfl00130_0230","kfl00130_0230_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00131_0170","kfl00131_0170_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00135_0100","kfl00135_0100_v1.1","Klebsormidium nitens","(at5g41880 : 457.0) POLA3; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer, DNA replication; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, small subunit (InterPro:IPR002755), DNA primase, small subunit, eukaryotic/archaeal (InterPro:IPR014052); Has 510 Blast hits to 504 proteins in 249 species: Archae - 95; Bacteria - 0; Metazoa - 124; Fungi - 138; Plants - 44; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink). & (reliability: 914.0) & (original description: no original description)","protein_coding" "Kfl00136_0150","kfl00136_0150_v1.1","Klebsormidium nitens","(at2g47510 : 686.0) Encodes a mitochondrial-localized protein. The FUM1 gene appears to be essential, suggesting that FUM1 may play a crucial role as a fumarase in the tricarboxylic acid cycle.; fumarase 1 (FUM1); FUNCTIONS IN: fumarate hydratase activity, protein binding; INVOLVED IN: response to oxidative stress, response to salt stress, pollen tube development; LOCATED IN: mitochondrion; EXPRESSED IN: cotyledon, male gametophyte, guard cell, root; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Fumarate hydratase, class II (InterPro:IPR005677), L-Aspartase-like (InterPro:IPR008948), Fumarate lyase, conserved site (InterPro:IPR020557), Lyase 1, N-terminal (InterPro:IPR022761), Fumarase C, C-terminal (InterPro:IPR018951), Fumarate lyase (InterPro:IPR000362); BEST Arabidopsis thaliana protein match is: FUMARASE 2 (TAIR:AT5G50950.2); Has 19736 Blast hits to 19727 proteins in 2822 species: Archae - 389; Bacteria - 12991; Metazoa - 306; Fungi - 295; Plants - 106; Viruses - 0; Other Eukaryotes - 5649 (source: NCBI BLink). & (reliability: 1372.0) & (original description: no original description)","protein_coding" "Kfl00144_0030","kfl00144_0030_v1.1","Klebsormidium nitens","(at1g18335 : 168.0) Acyl-CoA N-acyltransferases (NAT) superfamily protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 336.0) & (original description: no original description)","protein_coding" "Kfl00144_0180","kfl00144_0180_v1.1","Klebsormidium nitens","(at1g24470 : 90.5) Encodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene.; beta-ketoacyl reductase 2 (KCR2); FUNCTIONS IN: oxidoreductase activity, ketoreductase activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: beta-ketoacyl reductase 1 (TAIR:AT1G67730.1); Has 80088 Blast hits to 80001 proteins in 3265 species: Archae - 726; Bacteria - 55481; Metazoa - 4714; Fungi - 3206; Plants - 2039; Viruses - 0; Other Eukaryotes - 13922 (source: NCBI BLink). & (reliability: 181.0) & (original description: no original description)","protein_coding" "Kfl00151_0050","kfl00151_0050_v1.1","Klebsormidium nitens","(at3g55850 : 505.0) Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 2 only in the first few N-terminal amino acids.; LONG AFTER FAR-RED 3 (LAF3); FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; INVOLVED IN: biological_process unknown; LOCATED IN: perinuclear region of cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidohydrolase 3 (InterPro:IPR013108), Metal-dependent hydrolase, composite domain (InterPro:IPR011059); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1010.0) & (original description: no original description)","protein_coding" "Kfl00153_0160","kfl00153_0160_v1.1","Klebsormidium nitens","(at4g02070 : 834.0) encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.; MUTS homolog 6 (MSH6); FUNCTIONS IN: damaged DNA binding; INVOLVED IN: mismatch repair; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein Msh6 (InterPro:IPR017261), DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-homologue MSH6 (InterPro:IPR015536), Tudor domain (InterPro:IPR002999); BEST Arabidopsis thaliana protein match is: homolog of DNA mismatch repair protein MSH3 (TAIR:AT4G25540.1). & (q9xgc9|msh2_maize : 175.0) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 1668.0) & (original description: no original description)","protein_coding" "Kfl00176_0100","kfl00176_0100_v1.1","Klebsormidium nitens","(at5g58140 : 89.4) Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light.; phototropin 2 (PHOT2); FUNCTIONS IN: protein serine/threonine kinase activity, FMN binding, kinase activity, blue light photoreceptor activity; INVOLVED IN: in 7 processes; LOCATED IN: Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), PAS fold (InterPro:IPR013767), Serine/threonine-protein kinase domain (InterPro:IPR002290), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: phototropin 1 (TAIR:AT3G45780.2); Has 25181 Blast hits to 21357 proteins in 1460 species: Archae - 236; Bacteria - 6754; Metazoa - 8411; Fungi - 2718; Plants - 3113; Viruses - 9; Other Eukaryotes - 3940 (source: NCBI BLink). & (q5z8k3|ado1_orysa : 87.0) Adagio-like protein 1 - Oryza sativa (Rice) & (reliability: 169.4) & (original description: no original description)","protein_coding" "Kfl00176_0230","kfl00176_0230_v1.1","Klebsormidium nitens","(at5g15270 : 129.0) RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT1G14170.3); Has 5625 Blast hits to 2559 proteins in 215 species: Archae - 0; Bacteria - 48; Metazoa - 3662; Fungi - 737; Plants - 967; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink). & (reliability: 258.0) & (original description: no original description)","protein_coding" "Kfl00180_0150","kfl00180_0150_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00181_0220","kfl00181_0220_v1.1","Klebsormidium nitens","(at4g08990 : 1038.0) DNA (cytosine-5-)-methyltransferase family protein; FUNCTIONS IN: DNA binding, DNA (cytosine-5-)-methyltransferase activity; INVOLVED IN: DNA methylation; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA (cytosine-5)-methyltransferase 1 (InterPro:IPR017198), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), DNA methylase, C-5 cytosine-specific, active site (InterPro:IPR018117); BEST Arabidopsis thaliana protein match is: DNA methyltransferase 2 (TAIR:AT4G14140.1); Has 7214 Blast hits to 6137 proteins in 1440 species: Archae - 249; Bacteria - 4362; Metazoa - 525; Fungi - 274; Plants - 335; Viruses - 111; Other Eukaryotes - 1358 (source: NCBI BLink). & (q9axt8|cmt1_maize : 184.0) DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (Chromomethylase 1) (Zea methyltransferase2) (Zmet2) (DNA cytosine methyltransferase MET2a) - Zea mays (Maize) & (reliability: 2076.0) & (original description: no original description)","protein_coding" "Kfl00201_0050","kfl00201_0050_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00202_0120","kfl00202_0120_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00203_0160","kfl00203_0160_v1.1","Klebsormidium nitens","(at1g10930 : 726.0) DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination.; RECQ4A; FUNCTIONS IN: helicase activity, ATP-dependent 3'-5' DNA helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: chromosome organization, response to DNA damage stimulus, double-strand break repair via homologous recombination; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RQC domain (InterPro:IPR018982), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Helicase/RNase D C-terminal, HRDC domain (InterPro:IPR002121); BEST Arabidopsis thaliana protein match is: RECQ helicase L4B (TAIR:AT1G60930.1); Has 34923 Blast hits to 34782 proteins in 2821 species: Archae - 633; Bacteria - 21324; Metazoa - 3687; Fungi - 2728; Plants - 1606; Viruses - 18; Other Eukaryotes - 4927 (source: NCBI BLink). & (reliability: 1452.0) & (original description: no original description)","protein_coding" "Kfl00212_0060","kfl00212_0060_v1.1","Klebsormidium nitens","(at4g23940 : 379.0) FtsH extracellular protease family; FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q9bae0|ftsh_medsa : 278.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Medicago sativa (Alfalfa) & (reliability: 758.0) & (original description: no original description)","protein_coding" "Kfl00213_0020","kfl00213_0020_v1.1","Klebsormidium nitens","(at4g14385 : 114.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf6 (InterPro:IPR015418); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 228.0) & (original description: no original description)","protein_coding" "Kfl00213_0030","kfl00213_0030_v1.1","Klebsormidium nitens","(at1g04730 : 462.0) Necessary for sister chromatid cohesion. Acts in synergy with ETG1.; CHROMOSOME TRANSMISSION FIDELITY 18 (CTF18); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: sister chromatid cohesion; LOCATED IN: replication fork; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: replication factor C1 (TAIR:AT5G22010.1); Has 4018 Blast hits to 4006 proteins in 709 species: Archae - 400; Bacteria - 666; Metazoa - 673; Fungi - 766; Plants - 379; Viruses - 21; Other Eukaryotes - 1113 (source: NCBI BLink). & (reliability: 924.0) & (original description: no original description)","protein_coding" "Kfl00217_0140","kfl00217_0140_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00220_0150","kfl00220_0150_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00222_0100","kfl00222_0100_v1.1","Klebsormidium nitens","(at5g37630 : 265.0) EMBRYO DEFECTIVE 2656 (EMB2656); FUNCTIONS IN: binding; INVOLVED IN: mitotic chromosome condensation, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 333 Blast hits to 316 proteins in 147 species: Archae - 0; Bacteria - 4; Metazoa - 113; Fungi - 138; Plants - 47; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). & (reliability: 530.0) & (original description: no original description)","protein_coding" "Kfl00224_0030","kfl00224_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00249_0110","kfl00249_0110_v1.1","Klebsormidium nitens","(at3g32930 : 105.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 57 Blast hits to 57 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 210.0) & (original description: no original description)","protein_coding" "Kfl00249_0150","kfl00249_0150_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00257_0140","kfl00257_0140_v1.1","Klebsormidium nitens","(at3g06350 : 423.0) MATERNAL EFFECT EMBRYO ARREST 32 (MEE32); FUNCTIONS IN: NADP or NADPH binding, 3-dehydroquinate dehydratase activity, shikimate 5-dehydrogenase activity, binding, catalytic activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (InterPro:IPR006151), Aldolase-type TIM barrel (InterPro:IPR013785), Quinate/shikimate 5-dehydrogenase (InterPro:IPR011342), NAD(P)-binding domain (InterPro:IPR016040), Dehydroquinase class I (InterPro:IPR001381), Shikimate dehydrogenase substrate binding, N-terminal (InterPro:IPR013708); Has 14455 Blast hits to 14453 proteins in 2669 species: Archae - 507; Bacteria - 10604; Metazoa - 0; Fungi - 391; Plants - 114; Viruses - 0; Other Eukaryotes - 2839 (source: NCBI BLink). & (reliability: 846.0) & (original description: no original description)","protein_coding" "Kfl00261_0010","kfl00261_0010_v1.1","Klebsormidium nitens","(at3g52280 : 149.0) Bromodomain containing nuclear-localized protein involved in leaf development. GTE6 binds to the promoter and intron of AS1 and regulates its expression via histone acetylation.; general transcription factor group E6 (GTE6); FUNCTIONS IN: histone acetyltransferase activity, DNA binding; INVOLVED IN: chromatin remodeling; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: Transcription factor GTE6 (TAIR:AT2G34900.1). & (reliability: 298.0) & (original description: no original description)","protein_coding" "Kfl00264_0240","kfl00264_0240_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00270_0130","kfl00270_0130_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00279_0130","kfl00279_0130_v1.1","Klebsormidium nitens","(at4g30870 : 152.0) Encodes an Arabidopsis homolog of the endonuclease MSU81. T-DNA insertion lines of AtMSU81 have a deficiency in homologous recombination in somatic cells but only after genotoxic stress. Crosses with a hyperrecombinogenic mutant of the AtRecQ4A helicase resulted in synthetic lethality in the double mutant.; MMS AND UV SENSITIVE 81 (MUS81); CONTAINS InterPro DOMAIN/s: ERCC4 domain (InterPro:IPR006166), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Restriction endonuclease, type II-like (InterPro:IPR011335); BEST Arabidopsis thaliana protein match is: Restriction endonuclease, type II-like superfamily protein (TAIR:AT5G39770.1); Has 631 Blast hits to 481 proteins in 192 species: Archae - 11; Bacteria - 4; Metazoa - 158; Fungi - 249; Plants - 48; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink). & (reliability: 304.0) & (original description: no original description)","protein_coding" "Kfl00280_0100","kfl00280_0100_v1.1","Klebsormidium nitens","(at3g04820 : 414.0) Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, TruD (InterPro:IPR001656), Pseudouridine synthase TruD, eukaryotic (InterPro:IPR017091), Pseudouridine synthase, TruD, insertion domain (InterPro:IPR011760); Has 2276 Blast hits to 2198 proteins in 933 species: Archae - 260; Bacteria - 1262; Metazoa - 203; Fungi - 153; Plants - 61; Viruses - 0; Other Eukaryotes - 337 (source: NCBI BLink). & (reliability: 828.0) & (original description: no original description)","protein_coding" "Kfl00281_0060","kfl00281_0060_v1.1","Klebsormidium nitens","(at2g23530 : 224.0) Zinc-finger domain of monoamine-oxidase A repressor R1; CONTAINS InterPro DOMAIN/s: Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: Zinc-finger domain of monoamine-oxidase A repressor R1 (TAIR:AT4G37110.1); Has 512 Blast hits to 506 proteins in 112 species: Archae - 0; Bacteria - 4; Metazoa - 144; Fungi - 73; Plants - 256; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). & (reliability: 448.0) & (original description: no original description)","protein_coding" "Kfl00287_0110","kfl00287_0110_v1.1","Klebsormidium nitens","(at3g07670 : 261.0) Rubisco methyltransferase family protein; FUNCTIONS IN: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rubisco methyltransferase (InterPro:IPR011192), SET domain (InterPro:IPR001214), Rubisco LSMT substrate-binding (InterPro:IPR015353); BEST Arabidopsis thaliana protein match is: Rubisco methyltransferase family protein (TAIR:AT5G14260.2); Has 1290 Blast hits to 1288 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 264; Fungi - 357; Plants - 465; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink). & (p94026|rbcmt_tobac : 100.0) Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor (EC 2.1.1.127) ([Ribulose-bisphosphate carboxylase]-lysine N-methyltransferase) (RuBisCO methyltransferase) (RuBisCO LSMT) (rbcMT) & (reliability: 522.0) & (original description: no original description)","protein_coding" "Kfl00302_0030","kfl00302_0030_v1.1","Klebsormidium nitens","(at1g67780 : 163.0) Zinc-finger domain of monoamine-oxidase A repressor R1 protein; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), DDT domain, subgroup (InterPro:IPR018500), Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: Zinc-finger domain of monoamine-oxidase A repressor R1 protein (TAIR:AT1G67270.1); Has 462 Blast hits to 453 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 73; Plants - 215; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). & (reliability: 326.0) & (original description: no original description)","protein_coding" "Kfl00302_0040","kfl00302_0040_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00307_0080","kfl00307_0080_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00312_0030","kfl00312_0030_v1.1","Klebsormidium nitens","(at3g24010 : 132.0) ING1 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.; INHIBITOR OF GROWTH 1 (ING1); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: PHD finger protein-related (TAIR:AT1G54390.3); Has 1560 Blast hits to 1473 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 910; Fungi - 445; Plants - 120; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). & (reliability: 264.0) & (original description: no original description)","protein_coding" "Kfl00318_0070","kfl00318_0070_v1.1","Klebsormidium nitens","(at1g79690 : 898.0) nudix hydrolase homolog 3 (NUDT3); FUNCTIONS IN: dipeptidyl-peptidase activity, hydrolase activity; INVOLVED IN: proteolysis; LOCATED IN: cytosol, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), Peptidase M49, dipeptidyl-peptidase III (InterPro:IPR005317), NUDIX hydrolase domain (InterPro:IPR000086); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1796.0) & (original description: no original description)","protein_coding" "Kfl00323_0170","kfl00323_0170_v1.1","Klebsormidium nitens","(at5g23240 : 148.0) DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G42750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 296.0) & (original description: no original description)","protein_coding" "Kfl00326_0020","kfl00326_0020_v1.1","Klebsormidium nitens","(at2g22500 : 192.0) Encodes one of the mitochondrial dicarboxylate carriers (DIC): DIC1 (AT2G22500), DIC2 (AT4G24570), DIC3 (AT5G09470).; uncoupling protein 5 (UCP5); FUNCTIONS IN: binding, dicarboxylic acid transmembrane transporter activity; INVOLVED IN: transport, mitochondrial transport; LOCATED IN: mitochondrion, mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial brown fat uncoupling protein (InterPro:IPR002030), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: dicarboxylate carrier 2 (TAIR:AT4G24570.1); Has 25222 Blast hits to 13203 proteins in 454 species: Archae - 0; Bacteria - 2; Metazoa - 10525; Fungi - 7328; Plants - 4898; Viruses - 0; Other Eukaryotes - 2469 (source: NCBI BLink). & (reliability: 384.0) & (original description: no original description)","protein_coding" "Kfl00327_0060","kfl00327_0060_v1.1","Klebsormidium nitens","(at4g32700 : 819.0) Encodes a homolog of Drosophila MUS308 and mammalian DNA polymerase, which prevent spontaneous or DNA damage-induced production of DNA double strand breaks. Two conserved functional domains: an N-terminal superfamily II DNA/RNA helicase domain and a C-terminal prokaryotic-type DNA polymerase I domain. Required for regulated cell division and differentiation in meristems. Mutant plants show morphological defects, such as short roots, serrated leaves, and fasciation, as well as defective patterns of cell division and differentiation in the meristem. Mutant plants had 2.5 to 4.5-fold higher expression of ATGR1, ATBRCA1 and RAD51 genes. TEB is required for normal progression of DNA replication and for correct expression of genes during development.; helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding; FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of gene expression, DNA replication, DNA recombination, photomorphogenesis; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA-directed DNA polymerase, family A, palm domain (InterPro:IPR001098), DNA/RNA helicase, C-terminal (InterPro:IPR001650), DNA polymerase A domain (InterPro:IPR002298), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT2G42270.1); Has 17628 Blast hits to 16579 proteins in 2941 species: Archae - 600; Bacteria - 7507; Metazoa - 1254; Fungi - 1190; Plants - 590; Viruses - 412; Other Eukaryotes - 6075 (source: NCBI BLink). & (reliability: 1638.0) & (original description: no original description)","protein_coding" "Kfl00331_0130","kfl00331_0130_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00336_0090","kfl00336_0090_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00337_0020","kfl00337_0020_v1.1","Klebsormidium nitens","(o22585|amyb_medsa : 538.0) Beta-amylase (EC 3.2.1.2) (1,4-alpha-D-glucan maltohydrolase) - Medicago sativa (Alfalfa) & (at2g32290 : 519.0) beta-amylase 6 (BAM6); FUNCTIONS IN: cation binding, beta-amylase activity, catalytic activity; INVOLVED IN: cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 14, conserved site (InterPro:IPR018238), Glycoside hydrolase, family 14 (InterPro:IPR001554), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 14B, plant (InterPro:IPR001371), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-amylase 5 (TAIR:AT4G15210.1); Has 842 Blast hits to 841 proteins in 166 species: Archae - 0; Bacteria - 87; Metazoa - 0; Fungi - 0; Plants - 690; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). & (reliability: 1038.0) & (original description: no original description)","protein_coding" "Kfl00340_0020","kfl00340_0020_v1.1","Klebsormidium nitens","(at4g33680 : 587.0) Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on chr 4 between L23H3 and nga1139.; ABERRANT GROWTH AND DEATH 2 (AGD2); FUNCTIONS IN: transaminase activity, copper ion binding, L,L-diaminopimelate aminotransferase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: LL-diaminopimelate aminotransferase, plant-related (InterPro:IPR019942), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: AGD2-like defense response protein 1 (TAIR:AT2G13810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1174.0) & (original description: no original description)","protein_coding" "Kfl00349_0050","kfl00349_0050_v1.1","Klebsormidium nitens","(o48653|dpola_orysa : 1124.0) DNA polymerase alpha catalytic subunit (EC 2.7.7.7) - Oryza sativa (Rice) & (at5g67100 : 1019.0) Encodes the putative catalytic subunit of the DNA polymerase alpha. Interacts with genes involved in chromatin-mediated cellular memory. ICU2 genetically interacts with TERMINAL FLOWER2, the ortholog of HETEROCHROMATIN PROTEIN1 of animals and yeasts, and with the Polycomb group (PcG) gene CURLY LEAF. A number of regulatory genes were derepressed in the icu2-1 mutant, including genes associated with flowering time, floral meristem, and floral organ identity. Mutant has curled, involute leaves and causes early flowering.; INCURVATA2 (ICU2); FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: negative regulation of flower development, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134), Zinc finger, DNA-directed DNA polymerase, family B, alpha (InterPro:IPR015088), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, pol2 (InterPro:IPR004578); BEST Arabidopsis thaliana protein match is: DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (TAIR:AT5G63960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 2038.0) & (original description: no original description)","protein_coding" "Kfl00349_0100","kfl00349_0100_v1.1","Klebsormidium nitens","(at3g60830 : 373.0) Encodes an actin-related protein required for normal embryogenesis, plant architecture and floral organ abscission.; actin-related protein 7 (ARP7); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1); Has 12219 Blast hits to 11995 proteins in 2504 species: Archae - 0; Bacteria - 50; Metazoa - 5224; Fungi - 3189; Plants - 1407; Viruses - 2; Other Eukaryotes - 2347 (source: NCBI BLink). & (p30173|act13_soltu : 236.0) Actin-101 - Solanum tuberosum (Potato) & (reliability: 746.0) & (original description: no original description)","protein_coding" "Kfl00357_0110","kfl00357_0110_v1.1","Klebsormidium nitens","(at5g52560 : 723.0) Encodes a protein with UTP:sugar 1-phosphate uridylyltransferase activity, which has been shown to use a wide range of substrates including glucose-1-P, galactose-1-P, xylose-1-P, arabinose-1-P and glucuronate-1-P. The enzyme was shown to require Mg2+ or Mn2+ for activity. Mutations in USP can lead to a complete loss of male fertility.; UDP-sugar pyrophosphorylase (USP); FUNCTIONS IN: in 6 functions; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618); BEST Arabidopsis thaliana protein match is: N-acetylglucosamine-1-phosphate uridylyltransferase 1 (TAIR:AT1G31070.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1446.0) & (original description: no original description)","protein_coding" "Kfl00368_0140","kfl00368_0140_v1.1","Klebsormidium nitens","(at3g02910 : 147.0) AIG2-like (avirulence induced gene) family protein; CONTAINS InterPro DOMAIN/s: Butirosin biosynthesis, BtrG-like (InterPro:IPR013024), AIG2-like (InterPro:IPR009288); BEST Arabidopsis thaliana protein match is: AIG2-like (avirulence induced gene) family protein (TAIR:AT5G46720.1); Has 320 Blast hits to 319 proteins in 102 species: Archae - 4; Bacteria - 64; Metazoa - 146; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). & (reliability: 294.0) & (original description: no original description)","protein_coding" "Kfl00376_0100","kfl00376_0100_v1.1","Klebsormidium nitens","(q6es10|hat1_orysa : 137.0) Probable acetyltransferase type B catalytic subunit (EC 2.3.1.48) (HAT B) - Oryza sativa (Rice) & (at5g56740 : 130.0) Encodes an enzyme with histone acetyltransferase activity. Histone H4 is the primary substrate for the enzyme. Prior acetylation of lysine 12 of histone H4 reduces radioactive acetylation by HAG2. HAG2 acetylates histone H4 lysine 12.; histone acetyltransferase of the GNAT family 2 (HAG2); FUNCTIONS IN: histone acetyltransferase activity, H4 histone acetyltransferase activity; INVOLVED IN: histone acetylation, chromatin modification, chromatin silencing at telomere; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetyltransferase type B, catalytic subunit (InterPro:IPR017380), GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Histone acetyl transferase HAT1 N-terminal (InterPro:IPR019467); Has 368 Blast hits to 368 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 147; Plants - 50; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). & (reliability: 260.0) & (original description: no original description)","protein_coding" "Kfl00392_0050","kfl00392_0050_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00409_0070","kfl00409_0070_v1.1","Klebsormidium nitens","(at1g69190 : 391.0) encodes a bifunctional cytosolic hydroxymethyldihydropterin pyrophosphokinase/ dihydropteroate synthase (HPPK/DHPS)that is involved in tetrahydrofolate biosynthesis and is responsive to oxidative stress.; Dihydropterin pyrophosphokinase / Dihydropteroate synthase; CONTAINS InterPro DOMAIN/s: Dihydropteroate synthase-like (InterPro:IPR011005), 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK (InterPro:IPR000550), Dihydropteroate synthase (InterPro:IPR006390), Pterin-binding (InterPro:IPR000489); BEST Arabidopsis thaliana protein match is: Dihydropterin pyrophosphokinase / Dihydropteroate synthase (TAIR:AT4G30000.1); Has 15022 Blast hits to 14981 proteins in 2537 species: Archae - 158; Bacteria - 9759; Metazoa - 8; Fungi - 169; Plants - 69; Viruses - 0; Other Eukaryotes - 4859 (source: NCBI BLink). & (reliability: 782.0) & (original description: no original description)","protein_coding" "Kfl00418_0100","kfl00418_0100_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00421_0090","kfl00421_0090_v1.1","Klebsormidium nitens","(at5g46390 : 374.0) Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 748.0) & (original description: no original description)","protein_coding" "Kfl00425_0030","kfl00425_0030_v1.1","Klebsormidium nitens","(at3g18370 : 142.0) ATSYTF; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT5G11100.1); Has 5534 Blast hits to 4008 proteins in 246 species: Archae - 0; Bacteria - 0; Metazoa - 3360; Fungi - 437; Plants - 1305; Viruses - 0; Other Eukaryotes - 432 (source: NCBI BLink). & (reliability: 284.0) & (original description: no original description)","protein_coding" "Kfl00425_0040","kfl00425_0040_v1.1","Klebsormidium nitens","(at1g80560 : 526.0) The AtIMD2 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids.; isopropylmalate dehydrogenase 2 (IMD2); FUNCTIONS IN: 3-isopropylmalate dehydrogenase activity; INVOLVED IN: leucine biosynthetic process, metabolic process; LOCATED IN: chloroplast, chloroplast stroma, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Isopropylmalate dehydrogenase (InterPro:IPR004429), Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate/isopropylmalate dehydrogenase, conserved site (InterPro:IPR019818); BEST Arabidopsis thaliana protein match is: isopropylmalate dehydrogenase 3 (TAIR:AT1G31180.1); Has 15265 Blast hits to 15265 proteins in 2613 species: Archae - 395; Bacteria - 8292; Metazoa - 578; Fungi - 832; Plants - 243; Viruses - 0; Other Eukaryotes - 4925 (source: NCBI BLink). & (p29102|leu3_brana : 521.0) 3-isopropylmalate dehydrogenase, chloroplast precursor (EC 1.1.1.85) (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) - Brassica napus (Rape) & (reliability: 1052.0) & (original description: no original description)","protein_coding" "Kfl00430_0090","kfl00430_0090_v1.1","Klebsormidium nitens","(at1g69390 : 102.0) Encodes an Arabidopsis homologue of the bacterial MinE topological specificity factor ensuring correct division site placement. It is an essential integral component of the plastid division machinery.; homologue of bacterial MinE 1 (MINE1); CONTAINS InterPro DOMAIN/s: Septum formation topological specificity factor MinE (InterPro:IPR005527); Has 203 Blast hits to 203 proteins in 86 species: Archae - 0; Bacteria - 126; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description)","protein_coding" "Kfl00434_0080","kfl00434_0080_v1.1","Klebsormidium nitens","(at4g08920 : 663.0) Encodes CRY1, a flavin-type blue-light photoreceptor with ATP binding and autophosphorylation activity. Functions in perception of blue / green ratio of light. The photoreceptor may be involved in electron transport. Mutant phenotype displays a blue light-dependent inhibition of hypocotyl elongation. Photoreceptor activity requires light-induced homodimerisation of the N-terminal CNT1 domains of CRY1. Involved in blue-light induced stomatal opening. The C-terminal domain of the protein undergoes a light dependent conformational change. Also involved in response to circadian rhythm. Mutants exhibit long hypocotyl under blue light and are out of phase in their response to circadian rhythm. CRY1 is present in the nucleus and cytoplasm. Different subcellular pools of CRY1 have different functions during photomorphogenesis of Arabidopsis seedlings.; cryptochrome 1 (CRY1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), Cryptochrome C-terminal (InterPro:IPR020978), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 2 (TAIR:AT1G04400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p40115|phr1_sinal : 592.0) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA photolyase) (Photoreactivating enzyme) - Sinapis alba (White mustard) (Brassica hirta) & (reliability: 1326.0) & (original description: no original description)","protein_coding" "Kfl00483_0070","kfl00483_0070_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00497_0060","kfl00497_0060_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00502_0020","kfl00502_0020_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00515_0020","kfl00515_0020_v1.1","Klebsormidium nitens","(at1g67690 : 499.0) Zincin-like metalloproteases family protein; FUNCTIONS IN: metalloendopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M3A/M3B, thimet/oligopeptidase F (InterPro:IPR001567); BEST Arabidopsis thaliana protein match is: Zincin-like metalloproteases family protein (TAIR:AT5G51540.1); Has 5194 Blast hits to 5176 proteins in 1382 species: Archae - 6; Bacteria - 3154; Metazoa - 337; Fungi - 406; Plants - 147; Viruses - 0; Other Eukaryotes - 1144 (source: NCBI BLink). & (reliability: 998.0) & (original description: no original description)","protein_coding" "Kfl00541_0050","kfl00541_0050_v1.1","Klebsormidium nitens","(at1g67325 : 114.0) Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: TBP-associated factor 15 (TAIR:AT1G50300.1). & (reliability: 228.0) & (original description: no original description)","protein_coding" "Kfl00561_0040","kfl00561_0040_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00566_0030","kfl00566_0030_v1.1","Klebsormidium nitens","(at5g41790 : 83.6) encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light.; COP1-interactive protein 1 (CIP1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of protein import into nucleus; LOCATED IN: cytoskeleton, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G64330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 167.2) & (original description: no original description)","protein_coding" "Kfl00567_0050","kfl00567_0050_v1.1","Klebsormidium nitens","(at2g14050 : 705.0) minichromosome maintenance 9 (MCM9); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA-dependent DNA replication initiation, DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT1G44900.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q43704|mcm3_maize : 258.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1410.0) & (original description: no original description)","protein_coding" "Kfl00577_0060","kfl00577_0060_v1.1","Klebsormidium nitens","(at3g54670 : 1011.0) Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment.; TITAN8 (TTN8); CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosome 3 (TAIR:AT5G48600.1). & (reliability: 2022.0) & (original description: no original description)","protein_coding" "Kfl00593_0030","kfl00593_0030_v1.1","Klebsormidium nitens","(at3g13490 : 625.0) Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype.; OVULE ABORTION 5 (OVA5); FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding, nucleic acid binding, lysine-tRNA ligase activity; INVOLVED IN: tRNA aminoacylation for protein translation, ovule development; LOCATED IN: mitochondrion, chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Lysyl-tRNA synthetase, class II (InterPro:IPR002313); BEST Arabidopsis thaliana protein match is: lysyl-tRNA synthetase 1 (TAIR:AT3G11710.1); Has 27489 Blast hits to 22097 proteins in 2943 species: Archae - 404; Bacteria - 18954; Metazoa - 615; Fungi - 809; Plants - 266; Viruses - 0; Other Eukaryotes - 6441 (source: NCBI BLink). & (q6f2u9|syk_orysa : 326.0) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) - Oryza sativa (Rice) & (reliability: 1250.0) & (original description: no original description)","protein_coding" "Kfl00593_0080","kfl00593_0080_v1.1","Klebsormidium nitens","(at1g08540 : 226.0) Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.; RNApolymerase sigma subunit 2 (SIG2); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 region 1.2 (InterPro:IPR009042), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma-subunit F (TAIR:AT2G36990.1); Has 24116 Blast hits to 24030 proteins in 2811 species: Archae - 0; Bacteria - 17119; Metazoa - 4; Fungi - 2; Plants - 243; Viruses - 12; Other Eukaryotes - 6736 (source: NCBI BLink). & (reliability: 452.0) & (original description: no original description)","protein_coding" "Kfl00608_0090","kfl00608_0090_v1.1","Klebsormidium nitens","(at5g61460 : 571.0) Encodes SMC6B (STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage.; hypersensitive to MMS, irradiation and MMC (MIM); FUNCTIONS IN: ATP binding; INVOLVED IN: double-strand break repair, sister chromatid cohesion, chromosome segregation, response to X-ray, double-strand break repair via homologous recombination; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 6A (TAIR:AT5G07660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1142.0) & (original description: no original description)","protein_coding" "Kfl00613_0020","kfl00613_0020_v1.1","Klebsormidium nitens","(at5g44240 : 1025.0) aminophospholipid ATPase 2 (ALA2); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism; INVOLVED IN: metabolic process, phospholipid transport, ATP biosynthetic process; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, phospholipid-translocating, flippase (InterPro:IPR006539), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: aminophospholipid ATPase 1 (TAIR:AT5G04930.1). & (q8run1|aca3_orysa : 99.8) Calcium-transporting ATPase 3, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 3) - Oryza sativa (Rice) & (reliability: 2050.0) & (original description: no original description)","protein_coding" "Kfl00614_0020","kfl00614_0020_v1.1","Klebsormidium nitens","(at3g13870 : 803.0) required for regulated cell expansion and normal root hair development. Encodes an evolutionarily conserved protein with putative GTP-binding motifs that is implicated in the control of vesicle trafficking between the endoplasmic reticulum and the Golgi compartments.; ROOT HAIR DEFECTIVE 3 (RHD3); FUNCTIONS IN: GTP binding; INVOLVED IN: root epidermal cell differentiation, plant-type cell wall biogenesis, ER to Golgi vesicle-mediated transport, actin cytoskeleton organization, cell tip growth; LOCATED IN: endoplasmic reticulum, plasma membrane, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Root hair defective 3 GTP-binding (InterPro:IPR008803); BEST Arabidopsis thaliana protein match is: Root hair defective 3 GTP-binding protein (RHD3) (TAIR:AT1G72960.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1606.0) & (original description: no original description)","protein_coding" "Kfl00626_0050","kfl00626_0050_v1.1","Klebsormidium nitens","(at3g18524 : 1095.0) Encodes a DNA mismatch repair homolog of human MutS gene, MSH6. MSH2 is involved in maintaining genome stability and repressing recombination of mismatched heteroduplexes.There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2 has different binding specificity to different mismatches in combination with MSH3, MSH6, or MSH7.; MUTS homolog 2 (MSH2); FUNCTIONS IN: damaged DNA binding, protein binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, negative regulation of reciprocal meiotic recombination; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein, MSH2 (InterPro:IPR011184); BEST Arabidopsis thaliana protein match is: homolog of DNA mismatch repair protein MSH3 (TAIR:AT4G25540.1); Has 13560 Blast hits to 13453 proteins in 2654 species: Archae - 128; Bacteria - 8942; Metazoa - 734; Fungi - 813; Plants - 457; Viruses - 3; Other Eukaryotes - 2483 (source: NCBI BLink). & (q9xgc9|msh2_maize : 1091.0) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 2190.0) & (original description: no original description)","protein_coding" "Kfl00636_0055","kfl00636_0055_v1.1","Klebsormidium nitens","(at4g17100 : 292.0) EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Endoribonuclease XendoU (InterPro:IPR018998). & (reliability: 584.0) & (original description: no original description)","protein_coding" "Kfl00640_0020","kfl00640_0020_v1.1","Klebsormidium nitens","(at1g80380 : 354.0) encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle.; P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: glycerate kinase activity; INVOLVED IN: photorespiration; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. & (reliability: 708.0) & (original description: no original description)","protein_coding" "Kfl00644_0020","kfl00644_0020_v1.1","Klebsormidium nitens","(at4g14770 : 146.0) TESMIN/TSO1-like CXC 2 (TCX2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: Tesmin/TSO1-like CXC domain-containing protein (TAIR:AT3G22780.1); Has 1250 Blast hits to 741 proteins in 97 species: Archae - 0; Bacteria - 6; Metazoa - 464; Fungi - 8; Plants - 353; Viruses - 0; Other Eukaryotes - 419 (source: NCBI BLink). & (reliability: 292.0) & (original description: no original description)","protein_coding" "Kfl00647_0030","kfl00647_0030_v1.1","Klebsormidium nitens","(at2g37210 : 233.0) Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At5g11950.; lysine decarboxylase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: Putative lysine decarboxylase family protein (TAIR:AT3G53450.1). & (reliability: 452.0) & (original description: no original description)","protein_coding" "Kfl00647_0040","kfl00647_0040_v1.1","Klebsormidium nitens","(at3g48110 : 1020.0) glycine-tRNA ligase; EMBRYO-DEFECTIVE-DEVELOPMENT 1 (EDD1); FUNCTIONS IN: glycine-tRNA ligase activity; INVOLVED IN: regulation of embryonic development, glycyl-tRNA aminoacylation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal (InterPro:IPR002311), Glycyl-tRNA synthetase, class II, heterodimeric (InterPro:IPR006194), Glycyl-tRNA synthetase, class IIc, beta subunit (InterPro:IPR015944), Glycyl-tRNA synthetase, class IIc, alpha subunit (InterPro:IPR002310); Has 11308 Blast hits to 11293 proteins in 1754 species: Archae - 4; Bacteria - 6864; Metazoa - 4; Fungi - 1; Plants - 40; Viruses - 0; Other Eukaryotes - 4395 (source: NCBI BLink). & (reliability: 2040.0) & (original description: no original description)","protein_coding" "Kfl00717_0060","kfl00717_0060_v1.1","Klebsormidium nitens","(at5g22010 : 651.0) replication factor C1 (RFC1); FUNCTIONS IN: DNA clamp loader activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex, intracellular; CONTAINS InterPro DOMAIN/s: DNA replication factor RFC1, C-terminal (InterPro:IPR013725), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA replication factor C, large subunit (InterPro:IPR012178), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G04730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1302.0) & (original description: no original description)","protein_coding" "Kfl00733_0020","kfl00733_0020_v1.1","Klebsormidium nitens","(at2g31650 : 263.0) Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Involved in trimethylating histone H3-lysine 4. Involved in the formation, placement, and identity of flower organs. Role in regulation of homeotic genes. Functions as a receptor of phosphatidylinositol 5-phosphate. Localizes to cytoplasm, plasma membrane and nuclei, shifting to nuclei in the presence of PI5P.; homologue of trithorax (ATX1); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), FY-rich, C-terminal (InterPro:IPR003889), Post-SET domain (InterPro:IPR003616), FY-rich, N-terminal (InterPro:IPR003888), Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Lamin-B receptor of TUDOR domain (InterPro:IPR019023), FY-rich, C-terminal subgroup (InterPro:IPR018516), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), PWWP (InterPro:IPR000313), FY-rich, N-terminal subgroup (InterPro:IPR018518), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: trithorax-like protein 2 (TAIR:AT1G05830.2); Has 7192 Blast hits to 6948 proteins in 474 species: Archae - 2; Bacteria - 393; Metazoa - 3480; Fungi - 840; Plants - 1251; Viruses - 0; Other Eukaryotes - 1226 (source: NCBI BLink). & (q8s4p6|ez1_maize : 92.4) Polycomb protein EZ1 (Enhancer of zeste protein 1) - Zea mays (Maize) & (reliability: 526.0) & (original description: no original description)","protein_coding" "Kfl00736_g3","kfl00736_g3_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00759_0010","kfl00759_0010_v1.1","Klebsormidium nitens","(at2g18990 : 239.0) thioredoxin domain-containing protein 9 homolog (TXND9); INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin domain (InterPro:IPR013766); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT3G25580.1); Has 1035 Blast hits to 1035 proteins in 264 species: Archae - 10; Bacteria - 75; Metazoa - 396; Fungi - 154; Plants - 221; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink). & (reliability: 476.0) & (original description: no original description)","protein_coding" "Kfl00759_0050","kfl00759_0050_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00862_0010","kfl00862_0010_v1.1","Klebsormidium nitens","(at1g09430 : 619.0) Encodes subunit A of the heteromeric enzyme ATP citrate lyase (ACL). In animals, ACL is encoded by a single gene; ACL in Arabidopsis is composed of two polypeptides, ACLA (encoded by 3 genes) and ACLB (encoded by 2 genes). The holoenzyme has an A(4)B(4)stoichiometry. Expression of both ACLA and ACLB but not of either of the subunits alone results in ACL activity.; ATP-citrate lyase A-3 (ACLA-3); CONTAINS InterPro DOMAIN/s: ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-1 (TAIR:AT1G10670.4); Has 5303 Blast hits to 5302 proteins in 1635 species: Archae - 133; Bacteria - 3235; Metazoa - 230; Fungi - 139; Plants - 96; Viruses - 0; Other Eukaryotes - 1470 (source: NCBI BLink). & (reliability: 1238.0) & (original description: no original description)","protein_coding" "Kfl01048_0010","kfl01048_0010_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "LOC_Os01g01010","No alias","Oryza sativa","TBC domain containing protein, expressed","protein_coding" "LOC_Os01g05420","No alias","Oryza sativa","IWS1 C-terminus family protein, putative, expressed","protein_coding" "LOC_Os01g19470","No alias","Oryza sativa","nodal modulator 1 precursor, putative, expressed","protein_coding" "LOC_Os01g36930","No alias","Oryza sativa","ubiquitin carboxyl-terminal hydrolase 6, putative, expressed","protein_coding" "LOC_Os01g37120","No alias","Oryza sativa","WD domain, G-beta repeat domain containing protein, expressed","protein_coding" "LOC_Os01g44210","No alias","Oryza sativa","50S ribosomal protein L31, putative, expressed","protein_coding" "LOC_Os01g46750","No alias","Oryza sativa","AMP-binding enzyme, putative, expressed","protein_coding" "LOC_Os01g51300","No alias","Oryza sativa","WD domain, G-beta repeat domain containing protein, expressed","protein_coding" "LOC_Os01g55030","No alias","Oryza sativa","DNA-binding protein-related, putative, expressed","protein_coding" "LOC_Os01g55730","No alias","Oryza sativa","AGAP003732-PA, putative, expressed","protein_coding" "LOC_Os01g56550","No alias","Oryza sativa","transcription initiation factor IIF beta subunit, putative, expressed","protein_coding" "LOC_Os02g04950","No alias","Oryza sativa","splicing factor 3B subunit 1, putative, expressed","protein_coding" "LOC_Os02g06592","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding" "LOC_Os02g08360","No alias","Oryza sativa","RNA recognition motif, putative, expressed","protein_coding" "LOC_Os02g25580","No alias","Oryza sativa","Sec1 family transport protein, putative, expressed","protein_coding" "LOC_Os02g27340","No alias","Oryza sativa","riboflavin biosynthesis protein ribD, putative, expressed","protein_coding" "LOC_Os02g39550","No alias","Oryza sativa","calcium-binding mitochondrial protein anon-60Da, putative, expressed","protein_coding" "LOC_Os02g42180","No alias","Oryza sativa","retrotransposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os02g48000","No alias","Oryza sativa","TBC domain containing protein, expressed","protein_coding" "LOC_Os02g52290","No alias","Oryza sativa","peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed","protein_coding" "LOC_Os02g56000","No alias","Oryza sativa","26S protease regulatory subunit 6A, putative, expressed","protein_coding" "LOC_Os02g57450","No alias","Oryza sativa","Ser/Thr protein phosphatase family protein, putative, expressed","protein_coding" "LOC_Os02g58230","No alias","Oryza sativa","C2 domain containing protein, putative, expressed","protein_coding" "LOC_Os03g11360","No alias","Oryza sativa","leucine rich repeat containing protein, expressed","protein_coding" "LOC_Os03g19410","No alias","Oryza sativa","OsPOP7 - Putative Prolyl Oligopeptidase homologue, expressed","protein_coding" "LOC_Os03g36000","No alias","Oryza sativa","retrotransposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os03g50320","No alias","Oryza sativa","phosphatidylinositol 4-kinase PI4K, putative, expressed","protein_coding" "LOC_Os03g53980","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os03g59250","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os03g63590","No alias","Oryza sativa","metallo-beta-lactamase, putative, expressed","protein_coding" "LOC_Os04g04000","No alias","Oryza sativa","ECT protein, putative, expressed","protein_coding" "LOC_Os04g28010","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os04g32340","No alias","Oryza sativa","RNA-binding motif protein, putative, expressed","protein_coding" "LOC_Os04g32850","No alias","Oryza sativa","basic proline-rich protein, putative, expressed","protein_coding" "LOC_Os04g34940","No alias","Oryza sativa","protein of unknown function domain containing protein, expressed","protein_coding" "LOC_Os04g41700","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os05g06014","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os05g06350","No alias","Oryza sativa","importin subunit alpha, putative, expressed","protein_coding" "LOC_Os05g08090","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os05g09490","No alias","Oryza sativa","peptidase, T1 family, putative, expressed","protein_coding" "LOC_Os05g15890","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding" "LOC_Os05g44760","No alias","Oryza sativa","hexokinase, putative, expressed","protein_coding" "LOC_Os05g45310","No alias","Oryza sativa","ER lumen protein retaining receptor, putative, expressed","protein_coding" "LOC_Os05g46570","No alias","Oryza sativa","WD domain, G-beta repeat domain containing protein, expressed","protein_coding" "LOC_Os05g46720","No alias","Oryza sativa","phosphatidylinositol transfer, putative, expressed","protein_coding" "LOC_Os05g48450","No alias","Oryza sativa","aminotransferase domain containing protein, putative, expressed","protein_coding" "LOC_Os06g02555","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os06g04340","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os06g07630","No alias","Oryza sativa","26S protease regulatory subunit 6A, putative, expressed","protein_coding" "LOC_Os06g12630","No alias","Oryza sativa","glutathione S-transferase, N-terminal domain containing protein, expressed","protein_coding" "LOC_Os06g19680","No alias","Oryza sativa","zinc finger, C3HC4 type domain containing protein, expressed","protein_coding" "LOC_Os06g43610","No alias","Oryza sativa","formamidopyrimidine-DNA glycosylase, putative, expressed","protein_coding" "LOC_Os07g01950","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os07g10250","No alias","Oryza sativa","DEAD-box ATP-dependent RNA helicase 52B, putative, expressed","protein_coding" "LOC_Os07g13270","No alias","Oryza sativa","SNF7 domain containing protein, putative, expressed","protein_coding" "LOC_Os07g22640","No alias","Oryza sativa","lipid binding protein, putative, expressed","protein_coding" "LOC_Os07g29360","No alias","Oryza sativa","tetratricopeptide repeat domain containing protein, expressed","protein_coding" "LOC_Os07g39780","No alias","Oryza sativa","SUMO-activating enzyme subunit 2, putative, expressed","protein_coding" "LOC_Os08g01660","No alias","Oryza sativa","mago nashi, putative, expressed","protein_coding" "LOC_Os08g03840","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os08g09100","No alias","Oryza sativa","RNA recognition motif containing protein, putative, expressed","protein_coding" "LOC_Os08g09940","No alias","Oryza sativa","GTP-binding protein, putative, expressed","protein_coding" "LOC_Os08g10600","No alias","Oryza sativa","UTP--glucose-1-phosphate uridylyltransferase, putative, expressed","protein_coding" "LOC_Os08g21350","No alias","Oryza sativa","cig3, putative, expressed","protein_coding" "LOC_Os08g38310","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os09g03600","No alias","Oryza sativa","immunoglobulin/major histocompatibility complex, putative, expressed","protein_coding" "LOC_Os09g04810","No alias","Oryza sativa","myosin heavy chain-related, putative, expressed","protein_coding" "LOC_Os09g15775","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os09g30310","No alias","Oryza sativa","core histone H2A/H2B/H3/H4, putative, expressed","protein_coding" "LOC_Os09g32532","No alias","Oryza sativa","60S ribosomal protein L32, putative, expressed","protein_coding" "LOC_Os09g39550","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os10g03550","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os10g28310","No alias","Oryza sativa","retrotransposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os10g37830","No alias","Oryza sativa","OsFBX391 - F-box domain containing protein, expressed","protein_coding" "LOC_Os10g40200","No alias","Oryza sativa","aminotransferase domain containing protein, putative, expressed","protein_coding" "LOC_Os10g42630","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os11g07860","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os11g11070","No alias","Oryza sativa","mRNA-capping enzyme, putative, expressed","protein_coding" "LOC_Os11g14010","No alias","Oryza sativa","PHD finger protein, putative, expressed","protein_coding" "LOC_Os11g28990","No alias","Oryza sativa","TBC domain containing protein, expressed","protein_coding" "LOC_Os11g36390","No alias","Oryza sativa","RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed","protein_coding" "LOC_Os11g37759","No alias","Oryza sativa","stripe rust resistance protein Yr10, putative, expressed","protein_coding" "LOC_Os11g37990","No alias","Oryza sativa","chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed","protein_coding" "LOC_Os11g40510","No alias","Oryza sativa","RNA recognition motif containing protein, putative, expressed","protein_coding" "LOC_Os11g41970","No alias","Oryza sativa","hypothetical protein","protein_coding" "LOC_Os11g47710","No alias","Oryza sativa","SNF7 domain containing protein, putative, expressed","protein_coding" "LOC_Os12g03190","No alias","Oryza sativa","bifunctional aspartokinase/homoserine dehydrogenase, putative, expressed","protein_coding" "LOC_Os12g10730","No alias","Oryza sativa","glutathione S-transferase, putative, expressed","protein_coding" "Mp1g02710.1","No alias","Marchantia polymorpha","small subunit of TFIIIf transcription factor complex","protein_coding" "Mp1g08230.1","No alias","Marchantia polymorpha","No annotation","protein_coding" "Mp1g09640.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp1g11620.1","No alias","Marchantia polymorpha","protein factor U2A of U2 small nuclear ribonucleoprotein particle (snRNP)","protein_coding" "Mp1g17490.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp1g18030.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp1g20280.1","No alias","Marchantia polymorpha","transcriptional co-activator (BET/GTE)","protein_coding" "Mp1g21090.1","No alias","Marchantia polymorpha","Histidine kinase 1 OS=Arabidopsis thaliana (sp|q9sxl4|ahk1_arath : 726.0)","protein_coding" "Mp1g21380.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp1g23090.1","No alias","Marchantia polymorpha","C2H2 zinc finger transcription factor. component SERRATE of DCL1-HYL1 miRNA biogenesis complex","protein_coding" "Mp1g24440.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp1g29090.1","No alias","Marchantia polymorpha","component SMC1/TTN8 of cohesin regulator complex","protein_coding" "Mp2g00500.1","No alias","Marchantia polymorpha","transcription factor (bHLH)","protein_coding" "Mp2g06850.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp2g12350.1","No alias","Marchantia polymorpha","Calmodulin-interacting protein 111 OS=Arabidopsis thaliana (sp|q9let7|ci111_arath : 393.0)","protein_coding" "Mp2g12890.1","No alias","Marchantia polymorpha","component ISY1/MAC8 of non-snRNP MOS4-associated complex","protein_coding" "Mp2g16750.1","No alias","Marchantia polymorpha","E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana (sp|q8gy23|upl1_arath : 197.0)","protein_coding" "Mp2g18470.1","No alias","Marchantia polymorpha","tRNA wybutosine-synthesizing protein 2/3/4 OS=Oryza sativa subsp. japonica (sp|q8h4d4|tyw23_orysj : 702.0)","protein_coding" "Mp3g00180.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp3g00540.1","No alias","Marchantia polymorpha","succinate dehydrogenase assembly factor (SDHAF4)","protein_coding" "Mp3g00790.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp3g05580.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp3g08140.1","No alias","Marchantia polymorpha","phenylpropanoid biosynthesis regulator (SAGL1)","protein_coding" "Mp3g14080.1","No alias","Marchantia polymorpha","Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana (sp|q9lvp0|y5639_arath : 377.0) & Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group(50.2.7 : 83.5)","protein_coding" "Mp3g20440.1","No alias","Marchantia polymorpha","component VPS35 of Retromer protein recycling complex","protein_coding" "Mp3g23360.1","No alias","Marchantia polymorpha","NUP107 scaffold nucleoporin of nuclear pore complex","protein_coding" "Mp3g25170.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp4g00180.1","No alias","Marchantia polymorpha","transcription factor (WRKY)","protein_coding" "Mp4g00830.1","No alias","Marchantia polymorpha","SSU processome assembly factor (SWA1)","protein_coding" "Mp4g00870.1","No alias","Marchantia polymorpha","EXO9-SUPERKILLER interaction factor (SKI7). GTPase component HBS1/SPL33 of DOM34-HBS1 aberrant mRNA detection complex","protein_coding" "Mp4g04260.1","No alias","Marchantia polymorpha","DNA repair protein (XRCC1)","protein_coding" "Mp4g04560.1","No alias","Marchantia polymorpha","ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana (sp|q9c813|deahd_arath : 654.0)","protein_coding" "Mp4g06150.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp4g13290.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp4g13310.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp4g14420.1","No alias","Marchantia polymorpha","small subunit of ribulose-1,5-bisphosphat carboxylase/oxygenase heterodimer","protein_coding" "Mp4g15580.1","No alias","Marchantia polymorpha","Dehydrogenase/reductase SDR family member FEY OS=Arabidopsis thaliana (sp|f4jjr8|fey_arath : 300.0)","protein_coding" "Mp4g20150.1","No alias","Marchantia polymorpha","regulatory factor (NEAP) nuclear shape determination","protein_coding" "Mp4g20160.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp5g03980.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp5g04990.1","No alias","Marchantia polymorpha","ssDNA-binding protein (OSB). TAC9 cofactor of plastid-encoded RNA polymerase","protein_coding" "Mp5g05550.1","No alias","Marchantia polymorpha","phosphodiesterase (PIG-O)","protein_coding" "Mp5g07630.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp5g22210.1","No alias","Marchantia polymorpha","prolyl hydroxylase","protein_coding" "Mp6g00480.1","No alias","Marchantia polymorpha","Non-symbiotic hemoglobin 0 OS=Physcomitrella patens subsp. patens (sp|q9m630|hbl0_phypa : 145.0)","protein_coding" "Mp6g01090.1","No alias","Marchantia polymorpha","NUP205 scaffold nucleoporin of nuclear pore complex","protein_coding" "Mp6g02200.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp6g02440.1","No alias","Marchantia polymorpha","component CSN1 of COP9 signalosome complex","protein_coding" "Mp6g02750.1","No alias","Marchantia polymorpha","component TIR1/AFB of auxin receptor complex. component FBX of SCF E3 ubiquitin ligase complex","protein_coding" "Mp6g06170.1","No alias","Marchantia polymorpha","subunit 2 of Pol III RNA polymerase","protein_coding" "Mp6g07230.1","No alias","Marchantia polymorpha","component UBP22 of SAGA transcription co-activator complex. ubiquitin-specific protease","protein_coding" "Mp6g14350.1","No alias","Marchantia polymorpha","BTB/POZ and MATH domain-containing protein 4 OS=Arabidopsis thaliana (sp|q9srv1|bpm4_arath : 211.0)","protein_coding" "Mp6g14630.1","No alias","Marchantia polymorpha","Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica (sp|q9zts1|sym_orysj : 115.0)","protein_coding" "Mp7g06140.1","No alias","Marchantia polymorpha","Peptide methionine sulfoxide reductase B1, chloroplastic OS=Arabidopsis thaliana (sp|q9c8m2|msrb1_arath : 211.0)","protein_coding" "Mp7g08970.1","No alias","Marchantia polymorpha","Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana (sp|q9sf32|iqd1_arath : 83.6)","protein_coding" "Mp7g12840.1","No alias","Marchantia polymorpha","E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana (sp|q9ffb6|zfp34_arath : 338.0)","protein_coding" "Mp7g14230.1","No alias","Marchantia polymorpha","14-3-3-like protein B OS=Vicia faba (sp|p42654|1433b_vicfa : 373.0)","protein_coding" "Mp8g00010.1","No alias","Marchantia polymorpha","protein kinase (LRR-VIII-1)","protein_coding" "Mp8g00880.1","No alias","Marchantia polymorpha","VAMP7-type R-type SNARE longin protein","protein_coding" "Mp8g08220.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp8g14990.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp8g17270.1","No alias","Marchantia polymorpha","component RFC1 of PCNA sliding clamp loader complex","protein_coding" "Potri.001G213900","No alias","Populus trichocarpa","replication factor C1","protein_coding" "Pp1s110_108V6","No alias","Physcomitrella patens","unknown [Picea sitchensis]","protein_coding" "Pp1s125_63V6","No alias","Physcomitrella patens","sua5 family protein","protein_coding" "Pp1s12_262V6","No alias","Physcomitrella patens","abortive infection protein","protein_coding" "Pp1s15_232V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s167_142V6","No alias","Physcomitrella patens","unnamed protein product [Vitis vinifera]","protein_coding" "Pp1s16_314V6","No alias","Physcomitrella patens","atp binding protein","protein_coding" "Pp1s199_129V6","No alias","Physcomitrella patens","ribulose bisphosphate carboxylase oxygenase activase chloroplast","protein_coding" "Pp1s19_217V6","No alias","Physcomitrella patens","LOB domain protein 37 [Arabidopsis thaliana]","protein_coding" "Pp1s225_68V6","No alias","Physcomitrella patens","replication factor c (activator 1) 145kda","protein_coding" "Pp1s23_46V6","No alias","Physcomitrella patens","molybdopterin synthase","protein_coding" "Pp1s247_5V6","No alias","Physcomitrella patens","F19I3.9; chaperone protein dnaJ-related [Arabidopsis thaliana]","protein_coding" "Pp1s267_84V6","No alias","Physcomitrella patens","hypothetical protein [Dictyostelium discoideum]","protein_coding" "Pp1s2_559V6","No alias","Physcomitrella patens","T6B13.8; myosin heavy chain-related [Arabidopsis thaliana]","protein_coding" "Pp1s30_353V6","No alias","Physcomitrella patens","LOC477533; similar to Ewing sarcoma breakpoint region 1 isoform EWS [Canis familiaris]","protein_coding" "Pp1s346_22V6","No alias","Physcomitrella patens","T9I4.16; FtsH protease, putative [EC:3.4.24.-] [Arabidopsis thaliana]","protein_coding" "Pp1s35_148V6","No alias","Physcomitrella patens","e2 protein isoform 5","protein_coding" "Pp1s379_3V6","No alias","Physcomitrella patens","hypothetical protein [Entamoeba histolytica HM-1:IMSS]","protein_coding" "Pp1s50_203V6","No alias","Physcomitrella patens","T8I13.23; expressed protein [Arabidopsis thaliana]","protein_coding" "Pp1s57_21V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s61_5V6","No alias","Physcomitrella patens","kynurenine 3-monooxygenase","protein_coding" "Pp1s68_153V6","No alias","Physcomitrella patens","hypothetical protein similar to Arabidopsis thaliana chromosome 5, MRG21.7 [Oryza sativa (japonica cultivar-group)]","protein_coding" "Pp1s6_446V6","No alias","Physcomitrella patens","MOJ10.16; expressed protein [Arabidopsis thaliana]","protein_coding" "Pp1s7_359V6","No alias","Physcomitrella patens","F16B3.37; expressed protein [Arabidopsis thaliana]","protein_coding" "Pp1s80_119V6","No alias","Physcomitrella patens","harpin binding protein 1","protein_coding" "Seita.1G009000.1","No alias","Setaria italica ","component *(U1C) of U1 snRNP complex","protein_coding" "Seita.1G044300.1","No alias","Setaria italica ","scaffold nucleoporin of nuclear pore complex *(NUP205)","protein_coding" "Seita.1G158300.1","No alias","Setaria italica ","sporopollenin export factor *(IEF)","protein_coding" "Seita.1G210700.1","No alias","Setaria italica ","phosphoethanolamine transferase-I *(PIG-N)","protein_coding" "Seita.1G272400.1","No alias","Setaria italica ","zinc metalloprotease *(STE24) & EC_3.4 hydrolase acting on peptide bond (peptidase)","protein_coding" "Seita.1G296900.1","No alias","Setaria italica ","regulatory protein *(FRIENDLY) of mitochondrion division","protein_coding" "Seita.1G300800.1","No alias","Setaria italica ","scaffold component *(VCS) of mRNA decapping complex","protein_coding" "Seita.1G332500.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G042500.1","No alias","Setaria italica ","miRNA/siRNA methyltransferase *(HEN1)","protein_coding" "Seita.2G042600.1","No alias","Setaria italica ","class-II histone deacetylase","protein_coding" "Seita.2G142700.1","No alias","Setaria italica ","component *(NRPB3) of RNA polymerase II complex & component *(NRPE3) of RNA polymerase V complex & component *(NRPD3) of RNA polymerase IV complex","protein_coding" "Seita.2G155900.1","No alias","Setaria italica ","nuclear-encoded organellar RNA polymerase *(NEP)","protein_coding" "Seita.2G180100.1","No alias","Setaria italica ","cysteine desulfurase component *(NFS1) of mitochondrial ISC system assembly phase & EC_2.8 transferase transferring sulfur-containing group","protein_coding" "Seita.2G201300.1","No alias","Setaria italica ","component *(MSH6) of MSH2-x mismatch repair heterodimers","protein_coding" "Seita.2G241100.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G420600.1","No alias","Setaria italica ","deubiquitinase *(UBP24)","protein_coding" "Seita.2G433700.1","No alias","Setaria italica ","chromatin remodeling factor *(SHPRH)","protein_coding" "Seita.3G011000.1","No alias","Setaria italica ","component *(CPFS5/CFIm25) of Cleavage Factor I (CF-Im) complex","protein_coding" "Seita.3G012400.1","No alias","Setaria italica ","EC_6.1 ligase forming carbon-oxygen bond & valine-tRNA ligase","protein_coding" "Seita.3G035800.1","No alias","Setaria italica ","leucine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond","protein_coding" "Seita.3G114400.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.3G126000.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.3G164300.1","No alias","Setaria italica ","histone chaperone *(NAP)","protein_coding" "Seita.3G222000.1","No alias","Setaria italica ","ribosome docking factor *(MDM38)","protein_coding" "Seita.3G228300.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.3G361000.1","No alias","Setaria italica ","component *(CDC5/MAC1) of MAC spliceosome-associated complex","protein_coding" "Seita.3G383600.1","No alias","Setaria italica ","EC_2.8 transferase transferring sulfur-containing group & CTU1-URM1 pathway mercaptopyruvate sulfurtransferase *(MST/RDH) & mercaptopyruvate sulfurtransferase","protein_coding" "Seita.4G032400.1","No alias","Setaria italica ","subunit beta2 of coat protein complex","protein_coding" "Seita.4G060000.1","No alias","Setaria italica ","protein factor *(PRPF8/SUS2) of MAC spliceosome-associated complex","protein_coding" "Seita.4G159900.1","No alias","Setaria italica ","component *(eIF2B-gamma) of eIF2B eIF2-GDP recycling complex","protein_coding" "Seita.4G173300.1","No alias","Setaria italica ","transcriptional co-repressor *(ECAP)","protein_coding" "Seita.4G185900.1","No alias","Setaria italica ","component *(mS84) of small mitoribosomal-subunit proteome","protein_coding" "Seita.4G233300.1","No alias","Setaria italica ","regulatory protein *(MINIYO) of RNA polymerase","protein_coding" "Seita.4G238800.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.5G027500.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.5G055300.1","No alias","Setaria italica ","exoribonuclease *(RAT1/XRN2)","protein_coding" "Seita.5G125400.1","No alias","Setaria italica ","deubiquitinase component *(GID6/UBP14) of GID ubiquitination complex","protein_coding" "Seita.5G129000.1","No alias","Setaria italica ","EC_6.1 ligase forming carbon-oxygen bond & threonine-tRNA ligase","protein_coding" "Seita.5G154200.1","No alias","Setaria italica ","component *(SMU1) of SMU splicing factor complex","protein_coding" "Seita.5G164900.1","No alias","Setaria italica ","nucleocytoplasmic transport karyopherin *(XPO5) & miRNA nuclear export factor (HASTY) of RNA-induced silencing complex (RISC) export","protein_coding" "Seita.5G227900.1","No alias","Setaria italica ","auxiliary component *(NAA15) of NatA/NatE N-terminal acetylase complexes","protein_coding" "Seita.5G355100.1","No alias","Setaria italica ","methylated DNA binding component *(SUVH1/3) of SUVH-DNAJ methylation reader complex & EC_2.1 transferase transferring one-carbon group","protein_coding" "Seita.5G387300.1","No alias","Setaria italica ","nucleoporin of nuclear pore complex *(NUP62)","protein_coding" "Seita.6G023400.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.6G032000.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.6G082500.1","No alias","Setaria italica ","component *(CSN3) of COP9 signalosome complex","protein_coding" "Seita.6G089900.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.6G129300.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.6G222900.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.6G237400.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.6G244400.1","No alias","Setaria italica ","peptidyl-prolyl cis-trans isomerase *(CYP71) & EC_5.2 cis-trans-isomerase","protein_coding" "Seita.7G013100.1","No alias","Setaria italica ","group-III RNA polymerase-II phosphatase & subcluster B phosphatase","protein_coding" "Seita.7G105700.1","No alias","Setaria italica ","scaffold nucleoporin of nuclear pore complex *(NUP155)","protein_coding" "Seita.7G135900.1","No alias","Setaria italica ","telomeric dsDNA-binding protein","protein_coding" "Seita.7G248800.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.7G255500.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.7G310400.1","No alias","Setaria italica ","scaffold nucleoporin of nuclear pore complex *(ALADIN)","protein_coding" "Seita.8G040900.1","No alias","Setaria italica ","BEL-type transcription factor","protein_coding" "Seita.8G062200.1","No alias","Setaria italica ","component *(POLD1) of DNA polymerase delta complex & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Seita.8G082900.1","No alias","Setaria italica ","component *(NOT11) of mRNA deadenylation CCR4-NOT complex","protein_coding" "Seita.8G121600.1","No alias","Setaria italica ","thymidylate synthase *(DRTS) & dihydrofolate reductase *(DRTS)","protein_coding" "Seita.8G157900.1","No alias","Setaria italica ","component *(RFC1) of PCNA sliding clamp loader complex","protein_coding" "Seita.8G159100.1","No alias","Setaria italica ","deubiquitinase *(UBP12-13) & deubiquitinase *(UBP12-13)","protein_coding" "Seita.8G193300.1","No alias","Setaria italica ","cofactor component *(GIF) of GRF-GIF transcriptional complex","protein_coding" "Seita.9G034300.1","No alias","Setaria italica ","small subunit *(AXR1/AXL) of E1 RUB ubiquitin-activating enzyme complex","protein_coding" "Seita.9G042000.1","No alias","Setaria italica ","regulatory GTPase (MIRO) of mitochondrion fission","protein_coding" "Seita.9G088200.1","No alias","Setaria italica ","component *(CstF50) of Cleavage Stimulatory Factor (CstF) complex","protein_coding" "Seita.9G089900.1","No alias","Setaria italica ","component *(EMF2/VRN2/FIS2) of PRC2 histone methylation complex","protein_coding" "Seita.9G093700.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G113100.1","No alias","Setaria italica ","kinase co-activator (ILITHYIA/GCN1) involved in eIF2 complex activation","protein_coding" "Seita.9G152800.1","No alias","Setaria italica ","component *(NOT3) of mRNA deadenylation CCR4-NOT complex","protein_coding" "Seita.9G188600.1","No alias","Setaria italica ","regulatory component *(VIR) of adenosine N6-methyltransferase complex","protein_coding" "Seita.9G204000.1","No alias","Setaria italica ","component *(bS18m) of small mitoribosomal-subunit proteome","protein_coding" "Seita.9G215900.1","No alias","Setaria italica ","pre-mRNA-processing protein *(PRP40C)","protein_coding" "Seita.9G222800.1","No alias","Setaria italica ","nucleocytoplasmic transport karyopherin *(MOS14)","protein_coding" "Seita.9G236600.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G263000.1","No alias","Setaria italica ","component *(GCN5/ADA4) of SAGA transcription co-activator complex","protein_coding" "Seita.9G278100.1","No alias","Setaria italica ","miRNA uridylyltransferase *(URT1)","protein_coding" "Seita.9G282400.1","No alias","Setaria italica ","chaperone involved in spliceosome assembly *(ICLN)","protein_coding" "Seita.9G367300.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G381200.1","No alias","Setaria italica ","component *(MAC7) of MAC spliceosome-associated complex","protein_coding" "Seita.9G406000.1","No alias","Setaria italica ","component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex","protein_coding" "Seita.9G427400.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G466100.1","No alias","Setaria italica ","auxin signalling transcriptional co-repressor *(TPL/TPR) & transcriptional co-repressor *(TPL/TPR)","protein_coding" "Seita.9G490200.1","No alias","Setaria italica ","EC_6.1 ligase forming carbon-oxygen bond & methionine-tRNA ligase","protein_coding" "Seita.9G528400.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G540700.1","No alias","Setaria italica ","component *(MTB) of adenosine N6-methyltransferase complex & EC_2.1 transferase transferring one-carbon group","protein_coding" "Sobic.001G028900.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G089600.1","No alias","Sorghum bicolor ","group-I intron splicing RNA helicase *(ABO6)","protein_coding" "Sobic.001G090800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G110600.1","No alias","Sorghum bicolor ","kinase co-activator (ILITHYIA/GCN1) involved in eIF2 complex activation","protein_coding" "Sobic.001G111600.1","No alias","Sorghum bicolor ","DYRK protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.001G149000.2","No alias","Sorghum bicolor ","FRS/FRF-type transcription factor","protein_coding" "Sobic.001G222500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G261585.1","No alias","Sorghum bicolor ","modification reader component *(LHP1) of PRC1 histone mono-ubiquitination complex","protein_coding" "Sobic.001G340000.3","No alias","Sorghum bicolor ","E3 ubiquitin ligase *(HUB)","protein_coding" "Sobic.001G393900.1","No alias","Sorghum bicolor ","demethoxyubiquinone hydroxylase","protein_coding" "Sobic.001G401700.1","No alias","Sorghum bicolor ","LL-diaminopimelate aminotransferase","protein_coding" "Sobic.001G449500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G466300.1","No alias","Sorghum bicolor ","threonylcarbamoyl-AMP synthase","protein_coding" "Sobic.001G536000.1","No alias","Sorghum bicolor ","component *(ARP4) shared with NuA4/SWR1 complexes & component *(ARP4) of SWR1 chromatin remodeling complex","protein_coding" "Sobic.002G009900.1","No alias","Sorghum bicolor ","LRR-XV protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.002G052400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G116300.1","No alias","Sorghum bicolor ","protein ADP-ribosyltransferase *(PARP) & EC_2.4 glycosyltransferase","protein_coding" "Sobic.002G275600.1","No alias","Sorghum bicolor ","component *(RFC1) of PCNA sliding clamp loader complex","protein_coding" "Sobic.002G313400.1","No alias","Sorghum bicolor ","RNA helicase *(Prp16)","protein_coding" "Sobic.002G317300.1","No alias","Sorghum bicolor ","calcium sensor and kinase *(CPK) & CDPK protein kinase & EC_2.7 transferase transferring phosphorus-containing group & calcium sensor *(CML)","protein_coding" "Sobic.002G320500.1","No alias","Sorghum bicolor ","MYB-RELATED transcription factor *(DRMY)","protein_coding" "Sobic.002G386600.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G406300.1","No alias","Sorghum bicolor ","scaffold component *(Nop56) of snoRNP rRNA methylation complex","protein_coding" "Sobic.002G426100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.003G014300.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.003G119400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.003G131200.1","No alias","Sorghum bicolor ","P4-type ATPase component *(ALA) of phospholipid flippase complex & active component *(ALA) of ALA-ALIS flippase complex & EC_3.6 hydrolase acting on acid anhydride","protein_coding" "Sobic.003G146600.1","No alias","Sorghum bicolor ","rRNA biogenesis auxiliary factor *(APUM23)","protein_coding" "Sobic.003G195000.1","No alias","Sorghum bicolor ","ATP-dependent metalloprotease *(FtsH4/11)","protein_coding" "Sobic.003G202100.1","No alias","Sorghum bicolor ","assembly factor of NADH dehydrogenase complex *(NDUFAF7)","protein_coding" "Sobic.003G260400.1","No alias","Sorghum bicolor ","DNA ligase *(LIG6) & EC_6.5 ligase forming phosphoric ester bond","protein_coding" "Sobic.003G260600.1","No alias","Sorghum bicolor ","subunit beta of ATP synthase peripheral MF1 subcomplex","protein_coding" "Sobic.003G274400.1","No alias","Sorghum bicolor ","component *(CAF1c/MSI) of CAF1 histone chaperone complex & flowering time factor *(FVE)","protein_coding" "Sobic.003G307900.1","No alias","Sorghum bicolor ","transcription factor","protein_coding" "Sobic.003G323900.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.003G362000.1","No alias","Sorghum bicolor ","3-deoxy-D-manno-octulosonic acid (Kdo) transferase *(KdtA)","protein_coding" "Sobic.003G420900.1","No alias","Sorghum bicolor ","EC_3.1 hydrolase acting on ester bond & S-formylglutathione hydrolase *(SFGH)","protein_coding" "Sobic.003G427100.1","No alias","Sorghum bicolor ","component *(Pfs2/FY) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & cleavage and polyadenylation specificity factor *(FY)","protein_coding" "Sobic.003G444600.1","No alias","Sorghum bicolor ","substrate binding component *(TGD2) of TGD lipid importer complex","protein_coding" "Sobic.004G000500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.004G031300.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.004G031400.1","No alias","Sorghum bicolor ","RKF3 protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.004G043750.1","No alias","Sorghum bicolor ","component *(NRPE1) of RNA polymerase V complex","protein_coding" "Sobic.004G086200.1","No alias","Sorghum bicolor ","EC_5.2 cis-trans-isomerase","protein_coding" "Sobic.004G097900.1","No alias","Sorghum bicolor ","mitochondrial RNA splicing factor *(ABO5)","protein_coding" "Sobic.004G111000.1","No alias","Sorghum bicolor ","transcriptional co-activator *(BET/GTE)","protein_coding" "Sobic.004G130400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.004G193300.1","No alias","Sorghum bicolor ","phosphoethanolamine transferase-I *(PIG-N)","protein_coding" "Sobic.004G248600.1","No alias","Sorghum bicolor ","component *(MED23) of tail module of MEDIATOR transcription co-activator complex","protein_coding" "Sobic.004G263300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.004G267300.1","No alias","Sorghum bicolor ","E3 ubiquitin ligase","protein_coding" "Sobic.004G332400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.004G345600.1","No alias","Sorghum bicolor ","transcriptional repressor *(IAA/AUX)","protein_coding" "Sobic.004G356900.1","No alias","Sorghum bicolor ","helicase component *(eIF4A3) of RNA quality control Exon Junction complex","protein_coding" "Sobic.005G028600.1","No alias","Sorghum bicolor ","E3 ubiquitin ligase component *(LTN1) of Ribosome-associated Quality Control (RQC) complex","protein_coding" "Sobic.005G032400.1","No alias","Sorghum bicolor ","component *(TRO/ASH2) of COMPASS histone trimethylation complex","protein_coding" "Sobic.005G045700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.005G087900.5","No alias","Sorghum bicolor ","EC_3.2 glycosylase & glucosylceramidase *(GCD)","protein_coding" "Sobic.005G160100.1","No alias","Sorghum bicolor ","component *(RFC1) of PCNA sliding clamp loader complex","protein_coding" "Sobic.005G163100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.005G191900.1","No alias","Sorghum bicolor ","monosaccharide transporter *(AZT)","protein_coding" "Sobic.006G126600.1","No alias","Sorghum bicolor ","Trihelix-type transcription factor","protein_coding" "Sobic.006G139100.1","No alias","Sorghum bicolor ","mRNA poly-A-tail binding factor *(PABP)","protein_coding" "Sobic.006G153900.1","No alias","Sorghum bicolor ","organic anion transporter *(OATP)","protein_coding" "Sobic.006G154800.4","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.006G184900.1","No alias","Sorghum bicolor ","component *(VIP6/CTR9) of PAF1C transcription initiation and elongation complex","protein_coding" "Sobic.006G199200.1","No alias","Sorghum bicolor ","E3 ubiquitin ligase *(ARA54)","protein_coding" "Sobic.006G217000.1","No alias","Sorghum bicolor ","imidazoleglycerol-phosphate dehydratase & EC_4.2 carbon-oxygen lyase","protein_coding" "Sobic.007G029200.1","No alias","Sorghum bicolor ","regulatory protein *(WAP) of SUN-WIP cytoskeleton-nucleoskeleton-linker complex","protein_coding" "Sobic.007G054800.1","No alias","Sorghum bicolor ","EC_6.1 ligase forming carbon-oxygen bond & valine-tRNA ligase","protein_coding" "Sobic.007G077900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.007G114000.1","No alias","Sorghum bicolor ","deacetylase component *(HDA19) of SNL-HDA19 histone deacetylase complex & EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond & component *(HDA6) of histone deacetylation complex & histone deacetylase *(HDA8)","protein_coding" "Sobic.007G157000.1","No alias","Sorghum bicolor ","component *(Sec23) of Sec23/24 cargo adaptor subcomplex","protein_coding" "Sobic.007G180100.1","No alias","Sorghum bicolor ","proline-tRNA ligase","protein_coding" "Sobic.007G224900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.008G118900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.008G138600.1","No alias","Sorghum bicolor ","GRAS-type transcription factor","protein_coding" "Sobic.008G143700.1","No alias","Sorghum bicolor ","metal cation transporter *(NRAMP) & metal cation transporter *(NRAMP)","protein_coding" "Sobic.008G150000.1","No alias","Sorghum bicolor ","non-canonical component *(XLG) of heterotrimeric G-protein complex","protein_coding" "Sobic.008G176000.1","No alias","Sorghum bicolor ","deubiquitinase *(UBP5/8-11)","protein_coding" "Sobic.009G003700.1","No alias","Sorghum bicolor ","miRNA recruiting factor (AGO) of RNA-induced silencing complex (RISC) assembly","protein_coding" "Sobic.009G255600.1","No alias","Sorghum bicolor ","core adaptor component *(DDB1) of CUL4-based E3 ubiquitin ligase complexes & core adaptor component *(DDB1) of CUL4-based E3 ubiquitin ligase complexes","protein_coding" "Sobic.010G003900.1","No alias","Sorghum bicolor ","EC_2.1 transferase transferring one-carbon group & type-II arginine N-methyltransferase *(PRMT7)","protein_coding" "Sobic.010G080300.1","No alias","Sorghum bicolor ","EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond","protein_coding" "Sobic.010G094700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.010G096000.1","No alias","Sorghum bicolor ","protease *(Deg)","protein_coding" "Sobic.010G113000.1","No alias","Sorghum bicolor ","aldehyde dehydrogenase *(ALDH2B) & EC_1.2 oxidoreductase acting on aldehyde or oxo group of donor","protein_coding" "Sobic.010G203300.1","No alias","Sorghum bicolor ","component *(ELP4) of ELONGATOR transcription elongation complex","protein_coding" "Sobic.010G209400.1","No alias","Sorghum bicolor ","component *(TAF5) of SAGA transcription co-activator complex","protein_coding" "Sobic.010G240800.1","No alias","Sorghum bicolor ","DNA polymerase *(REV1)","protein_coding" "Sobic.010G242000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.010G244900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Solyc01g010970","No alias","Solanum lycopersicum","Argonaute7","protein_coding" "Solyc01g065840","No alias","Solanum lycopersicum","F-box family protein (AHRD V3.3 *** B9GFH4_POPTR)","protein_coding" "Solyc01g066560","No alias","Solanum lycopersicum","Protein DETOXIFICATION (AHRD V3.3 *** K4AWQ7_SOLLC)","protein_coding" "Solyc01g074000","No alias","Solanum lycopersicum","Histone H3 (AHRD V3.3 *** A0A0E0P928_ORYRU)","protein_coding" "Solyc01g086820","No alias","Solanum lycopersicum","Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA)","protein_coding" "Solyc01g090290","No alias","Solanum lycopersicum","COP9 signalosome complex subunit 7 (AHRD V3.3 *** W9QI01_9ROSA)","protein_coding" "Solyc01g090750","No alias","Solanum lycopersicum","T-complex protein 1 alpha subunit (AHRD V3.3 *** AT3G20050.1)","protein_coding" "Solyc01g091750","No alias","Solanum lycopersicum","Arginine/serine-rich splicing factor (AHRD V3.3 *** D8L816_9POAL)","protein_coding" "Solyc01g095480","No alias","Solanum lycopersicum","Exosome complex exonuclease RRP41, putative (AHRD V3.3 *** B9SWZ0_RICCO)","protein_coding" "Solyc01g100320","No alias","Solanum lycopersicum","Disulfide-isomerase-like protein (AHRD V3.3 *** Q38JJ2_SOLTU)","protein_coding" "Solyc01g100730","No alias","Solanum lycopersicum","rhodanese-like domain protein (AHRD V3.3 *** AT1G09280.1)","protein_coding" "Solyc01g104460","No alias","Solanum lycopersicum","partner of Y14-MAGO (AHRD V3.3 *** AT1G11400.6)","protein_coding" "Solyc01g104510","No alias","Solanum lycopersicum","WD-40 repeat protein","protein_coding" "Solyc01g104640","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT4G15570.3)","protein_coding" "Solyc01g111870","No alias","Solanum lycopersicum","Serine/threonine-protein kinase ATR, putative (AHRD V3.3 *** B9S5G9_RICCO)","protein_coding" "Solyc02g014310","No alias","Solanum lycopersicum","glycine rich protein X55695","protein_coding" "Solyc02g038690","No alias","Solanum lycopersicum","Histone H2B (AHRD V3.3 *** K4B5W3_SOLLC)","protein_coding" "Solyc02g063060","No alias","Solanum lycopersicum","Zinc-finger domain of monoamine-oxidase A repressor R1 protein (AHRD V3.3 *** AT5G38690.2)","protein_coding" "Solyc02g063090","No alias","Solanum lycopersicum","T-complex protein 1 subunit zeta 1 (AHRD V3.3 *** TCPZA_ARATH)","protein_coding" "Solyc02g069840","No alias","Solanum lycopersicum","50S ribosomal protein L20 (AHRD V3.3 *** A0A0V0GV30_SOLCH)","protein_coding" "Solyc02g072180","No alias","Solanum lycopersicum","Rab family GTPase (AHRD V3.3 *** D8SVZ0_SELML)","protein_coding" "Solyc02g079050","No alias","Solanum lycopersicum","Anaphase-promoting complex subunit 4 (AHRD V3.3 *** A0A151T237_CAJCA)","protein_coding" "Solyc02g081840","No alias","Solanum lycopersicum","Translocator assembly and maintenance-like protein (AHRD V3.3 *** G8A1V5_MEDTR)","protein_coding" "Solyc02g092910","No alias","Solanum lycopersicum","Mortality factor 4-like protein 1 (AHRD V3.3 *** A0A0B2QZE4_GLYSO)","protein_coding" "Solyc03g007550","No alias","Solanum lycopersicum","LIM domain-containing protein A, putative isoform 1 (AHRD V3.3 *** A0A061G8M8_THECC)","protein_coding" "Solyc03g019840","No alias","Solanum lycopersicum","DNA binding protein (AHRD V3.3 *-* AT3G52170.4)","protein_coding" "Solyc03g113760","No alias","Solanum lycopersicum","E2F transcription factor-like E2FE (AHRD V3.3 *** W9SXR3_9ROSA)","protein_coding" "Solyc03g117650","No alias","Solanum lycopersicum","Phosphatidylinositol-glycan biosynthesis class F protein (AHRD V3.3 --* A0A199W8X3_ANACO)","protein_coding" "Solyc04g008680","No alias","Solanum lycopersicum","DBC1/CARP1-like protein (AHRD V3.3 *** A0A103XRU5_CYNCS)","protein_coding" "Solyc04g049140","No alias","Solanum lycopersicum","Transcription factor jumonji (JmjC) domain protein (AHRD V3.3 *** A0A072VKD6_MEDTR)","protein_coding" "Solyc04g051350","No alias","Solanum lycopersicum","Ribonucleoside-diphosphate reductase (AHRD V3.3 *** K4BS95_SOLLC)","protein_coding" "Solyc04g051490","No alias","Solanum lycopersicum","essential meiotic endonuclease 1B (AHRD V3.3 *-* AT2G22140.1)","protein_coding" "Solyc04g074580","No alias","Solanum lycopersicum","Histone H3 (AHRD V3.3 *** K7VSQ3_MAIZE)","protein_coding" "Solyc04g080160","No alias","Solanum lycopersicum","COP9 signalosome complex subunit 4 (AHRD V3.3 *** S5QCB8_TOBAC)","protein_coding" "Solyc05g007130","No alias","Solanum lycopersicum","SUN-like protein 15","protein_coding" "Solyc05g049950","No alias","Solanum lycopersicum","Small nuclear ribonucleoprotein-associated protein (AHRD V3.3 *** K4C128_SOLLC)","protein_coding" "Solyc05g050900","No alias","Solanum lycopersicum","Spindle and kinetochore-associated protein 1 homolog (AHRD V3.3 *** SKA1_ARATH)","protein_coding" "Solyc06g005390","No alias","Solanum lycopersicum","Histone H2B (AHRD V3.3 *** K4C323_SOLLC)","protein_coding" "Solyc06g008940","No alias","Solanum lycopersicum","Elongation factor Tu (AHRD V3.3 *** K4C3S4_SOLLC)","protein_coding" "Solyc06g036000","No alias","Solanum lycopersicum","DNA-directed RNA polymerase III subunit RPC3 (AHRD V3.3 *** A0A0B0MV99_GOSAR)","protein_coding" "Solyc06g048460","No alias","Solanum lycopersicum","Anaphase-promoting complex subunit 1 (AHRD V3.3 *** W9RQW6_9ROSA)","protein_coding" "Solyc06g060150","No alias","Solanum lycopersicum","replication factor C subunit 3 (AHRD V3.3 *** AT1G77470.1)","protein_coding" "Solyc06g062350","No alias","Solanum lycopersicum","RuvB-like helicase (AHRD V3.3 *** K4C6W6_SOLLC)","protein_coding" "Solyc06g065520","No alias","Solanum lycopersicum","T-complex protein 1 subunit eta (AHRD V3.3 *** TCPH_ARATH)","protein_coding" "Solyc06g074690","No alias","Solanum lycopersicum","ARM repeat superfamily protein (AHRD V3.3 *** AT5G22820.3)","protein_coding" "Solyc06g075800","No alias","Solanum lycopersicum","Histone H2B (AHRD V3.3 *** K4C9U5_SOLLC)","protein_coding" "Solyc06g075960","No alias","Solanum lycopersicum","histone H4 (AHRD V3.3 *** AT2G28740.1)","protein_coding" "Solyc06g084020","No alias","Solanum lycopersicum","histone H1","protein_coding" "Solyc07g005880","No alias","Solanum lycopersicum","Replication factor C subunit 1 (AHRD V3.3 *** A0A061FPV6_THECC)","protein_coding" "Solyc07g008780","No alias","Solanum lycopersicum","transmembrane protein (AHRD V3.3 *** AT4G29960.1)","protein_coding" "Solyc07g017540","No alias","Solanum lycopersicum","LEU22441 LeRAD51","protein_coding" "Solyc07g019530","No alias","Solanum lycopersicum","Afadin/alpha-actinin-binding protein (AHRD V3.3 *** AT5G57410.3)","protein_coding" "Solyc07g045370","No alias","Solanum lycopersicum","Las1-like family protein (AHRD V3.3 *** B9HNI6_POPTR)","protein_coding" "Solyc07g048010","No alias","Solanum lycopersicum","Thymidylate kinase (AHRD V3.3 *** ZEUS1_ARATH)","protein_coding" "Solyc07g053480","No alias","Solanum lycopersicum","Rab family GTPase (AHRD V3.3 *** D8RE14_SELML)","protein_coding" "Solyc08g036600","No alias","Solanum lycopersicum","Transducin/WD40 repeat protein (AHRD V3.3 *-* G7L4S7_MEDTR)","protein_coding" "Solyc08g041780","No alias","Solanum lycopersicum","Neurochondrin (AHRD V3.3 *** A0A0B0NUA0_GOSAR)","protein_coding" "Solyc08g067150","No alias","Solanum lycopersicum","Tesmin/TSO1-like CXC domain-containing protein (AHRD V3.3 *-* AT3G22780.1)","protein_coding" "Solyc09g005010","No alias","Solanum lycopersicum","Importin subunit beta-1 (AHRD V3.3 *** W9RG70_9ROSA)","protein_coding" "Solyc09g007230","No alias","Solanum lycopersicum","Zinc finger transcription factor 53","protein_coding" "Solyc09g008630","No alias","Solanum lycopersicum","DNA replication complex GINS protein PSF1 (AHRD V3.3 *** B6THR1_MAIZE)","protein_coding" "Solyc09g011420","No alias","Solanum lycopersicum","Ribosomal protein l7ae (AHRD V3.3 *** A0A0A0LF58_CUCSA)","protein_coding" "Solyc09g013160","No alias","Solanum lycopersicum","Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** AT3G09080.3)","protein_coding" "Solyc09g020150","No alias","Solanum lycopersicum","Glycine--tRNA ligase beta subunit (AHRD V3.3 *** A0A1D1YWE6_9ARAE)","protein_coding" "Solyc09g059440","No alias","Solanum lycopersicum","LOW QUALITY:Cell division control protein 45-like protein (AHRD V3.3 *** W9RYN1_9ROSA)","protein_coding" "Solyc09g065340","No alias","Solanum lycopersicum","Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (AHRD V3.3 *-* AT5G36740.5)","protein_coding" "Solyc09g066100","No alias","Solanum lycopersicum","Histone H1 (AHRD V3.3 *** H1_SOLLC)","protein_coding" "Solyc09g074300","No alias","Solanum lycopersicum","Histone H2A (AHRD V3.3 *** K4CV07_SOLLC)","protein_coding" "Solyc09g082130","No alias","Solanum lycopersicum","spindle assembly abnormal protein (AHRD V3.3 *** AT3G22520.1)","protein_coding" "Solyc09g082710","No alias","Solanum lycopersicum","Histone H2A (AHRD V3.3 *** K4CVP7_SOLLC)","protein_coding" "Solyc09g092140","No alias","Solanum lycopersicum","Methyltransferase-like protein 13 (AHRD V3.3 *** W9QL05_9ROSA)","protein_coding" "Solyc10g006560","No alias","Solanum lycopersicum","Histone H2A (AHRD V3.3 *** A0A0V0H7M3_SOLCH)","protein_coding" "Solyc10g078860","No alias","Solanum lycopersicum","DNA-directed RNA polymerase subunit beta (AHRD V3.3 *** K4D2C7_SOLLC)","protein_coding" "Solyc10g080880","No alias","Solanum lycopersicum","SlPIN7","protein_coding" "Solyc11g005440","No alias","Solanum lycopersicum","Endonuclease or glycosyl hydrolase, putative isoform 1 (AHRD V3.3 *** A0A061DIG3_THECC)","protein_coding" "Solyc11g006170","No alias","Solanum lycopersicum","DnaJ domain-containing protein (AHRD V3.3 *-* A0A118K6N5_CYNCS)","protein_coding" "Solyc11g012920","No alias","Solanum lycopersicum","translation initiation factor (AHRD V3.3 *** AT1G44780.2)","protein_coding" "Solyc11g066010","No alias","Solanum lycopersicum","ATP synthase subunit epsilon (AHRD V3.3 *** W9SG58_9ROSA)","protein_coding" "Solyc11g070140","No alias","Solanum lycopersicum","Protein kinase (AHRD V3.3 *** A0A059LJU4_9CHLO)","protein_coding" "Solyc12g020050","No alias","Solanum lycopersicum","DNA-binding protein DQ117941","protein_coding" "Solyc12g088470","No alias","Solanum lycopersicum","cyclin A3_4","protein_coding" "Solyc12g100330","No alias","Solanum lycopersicum","cytosine-5 DNA methyltransferase3L","protein_coding" "Sopen07g001990","No alias","Solanum pennellii","Replication factor RFC1 C terminal domain","protein_coding"