"sequence_id","alias","species","description","type"
"103062","No alias","Selaginella moellendorffii ","Protein kinase superfamily protein","protein_coding"
"107444","No alias","Selaginella moellendorffii ","RNA-binding KH domain-containing protein","protein_coding"
"156840","No alias","Selaginella moellendorffii ","homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1","protein_coding"
"165405","No alias","Selaginella moellendorffii ","NADH-ubiquinone oxidoreductase 24 kDa subunit, putative","protein_coding"
"229621","No alias","Selaginella moellendorffii ","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein","protein_coding"
"235486","No alias","Selaginella moellendorffii ","vacuolar protein sorting 11","protein_coding"
"266933","No alias","Selaginella moellendorffii ","alpha/beta-Hydrolases superfamily protein","protein_coding"
"36361","No alias","Selaginella moellendorffii ","Nodulin MtN3 family protein","protein_coding"
"402250","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"409528","No alias","Selaginella moellendorffii ","Surfeit locus protein 6","protein_coding"
"423082","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"441968","No alias","Selaginella moellendorffii ","anaphase-promoting complex subunit 8","protein_coding"
"446768","No alias","Selaginella moellendorffii ","Chaperone DnaJ-domain superfamily protein","protein_coding"
"5945","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"70503","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"75793","No alias","Selaginella moellendorffii ","DNA-directed RNA polymerase II","protein_coding"
"83588","No alias","Selaginella moellendorffii ","translocase inner membrane subunit 44-2","protein_coding"
"90860","No alias","Selaginella moellendorffii ","Ubiquitin C-terminal hydrolases superfamily protein","protein_coding"
"91806","No alias","Selaginella moellendorffii ","DNAse I-like superfamily protein","protein_coding"
"99851","No alias","Selaginella moellendorffii ","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding"
"A4A49_29551","No alias","Nicotiana attenuata","hypothetical protein","protein_coding"
"AC206198.3_FG001","No alias","Zea mays","Function unknown","protein_coding"
"AC206954.3_FG006","No alias","Zea mays","Function unknown","protein_coding"
"AC214534.3_FG010","No alias","Zea mays","Pentatricopeptide repeat (PPR-like) superfamily protein","protein_coding"
"AC225147.4_FG002","No alias","Zea mays","Ribosomal protein S12/S23 family protein","protein_coding"
"At1g03530","No alias","Arabidopsis thaliana","NAF1 [Source:UniProtKB/TrEMBL;Acc:A0A178WI11]","protein_coding"
"At1g04190","No alias","Arabidopsis thaliana","TPR3 [Source:UniProtKB/TrEMBL;Acc:A0A178WLS7]","protein_coding"
"At1g05910","No alias","Arabidopsis thaliana","ATPase family AAA domain-containing protein At1g05910 [Source:UniProtKB/Swiss-Prot;Acc:F4IAE9]","protein_coding"
"At1g06380","No alias","Arabidopsis thaliana","Ribosomal protein L1p/L10e family [Source:UniProtKB/TrEMBL;Acc:Q9LMI1]","protein_coding"
"At1g12800","No alias","Arabidopsis thaliana","Nucleic acid-binding, OB-fold-like protein [Source:UniProtKB/TrEMBL;Acc:Q94AJ9]","protein_coding"
"At1g15250","No alias","Arabidopsis thaliana","60S ribosomal protein L37-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFH7]","protein_coding"
"At1g17880","No alias","Arabidopsis thaliana","Basic transcription factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SMW7]","protein_coding"
"At1g20950","No alias","Arabidopsis thaliana","Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178WMV9]","protein_coding"
"At1g21380","No alias","Arabidopsis thaliana","TOM1-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL6]","protein_coding"
"At1g29940","No alias","Arabidopsis thaliana","DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178W5B4]","protein_coding"
"At1g30240","No alias","Arabidopsis thaliana","Proline-, glutamic acid/leucine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q0WV78]","protein_coding"
"At1g43170","No alias","Arabidopsis thaliana","60S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]","protein_coding"
"At1g62150","No alias","Arabidopsis thaliana","Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:Q8GWB0]","protein_coding"
"At1g69070","No alias","Arabidopsis thaliana","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPr /.../07276); Has 69842 Blast hits to 35213 proteins in 1572 species: Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink). [Source:TAIR;Acc:AT1G69070]","protein_coding"
"At1g71210","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At1g71210, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GZA6]","protein_coding"
"At1g73630","No alias","Arabidopsis thaliana","Probable calcium-binding protein CML26 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9U8]","protein_coding"
"At1g75670","No alias","Arabidopsis thaliana","DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q8H1F8]","protein_coding"
"At1g76400","No alias","Arabidopsis thaliana","Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A [Source:UniProtKB/Swiss-Prot;Acc:Q9SFX3]","protein_coding"
"At1g78440","No alias","Arabidopsis thaliana","Gibberellin 2-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEA2]","protein_coding"
"At1g78610","No alias","Arabidopsis thaliana","Mechanosensitive ion channel protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM1]","protein_coding"
"At2g01640","No alias","Arabidopsis thaliana","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZU92]","protein_coding"
"At2g16430","No alias","Arabidopsis thaliana","Purple acid phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178VZQ7]","protein_coding"
"At2g18260","No alias","Arabidopsis thaliana","SYP112 [Source:UniProtKB/TrEMBL;Acc:A0A178VPA2]","protein_coding"
"At2g18900","No alias","Arabidopsis thaliana","Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IRI1]","protein_coding"
"At2g21860","No alias","Arabidopsis thaliana","At2g21860/F7D8.18 [Source:UniProtKB/TrEMBL;Acc:Q9SJ13]","protein_coding"
"At2g22190","No alias","Arabidopsis thaliana","Probable trehalose-phosphate phosphatase E [Source:UniProtKB/Swiss-Prot;Acc:Q67X99]","protein_coding"
"At2g36070","No alias","Arabidopsis thaliana","Mitochondrial import inner membrane translocase subunit TIM44-2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XF06]","protein_coding"
"At2g37860","No alias","Arabidopsis thaliana","Protein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]","protein_coding"
"At2g39850","No alias","Arabidopsis thaliana","Subtilisin-like protease SBT4.1 [Source:UniProtKB/Swiss-Prot;Acc:F4IG09]","protein_coding"
"At2g40360","No alias","Arabidopsis thaliana","Ribosome biogenesis protein BOP1 homolog [Source:UniProtKB/Swiss-Prot;Acc:F4IH25]","protein_coding"
"At2g40430","No alias","Arabidopsis thaliana","CONTAINS InterPro DOMAIN/s: P60-like (InterPro:IPR011687), Tumour suppressor protein Gltscr2 (InterPro:IPR011211); Has 709 Blast hits to 643 proteins in 201 species: Archae - 0; Bacteria - 32; Metazoa - 224; Fungi - 154; Plants - 45; Viruses - 0; Ot /.../karyotes - 254 (source: NCBI BLink). [Source:TAIR;Acc:AT2G40430]","protein_coding"
"At2g41190","No alias","Arabidopsis thaliana","Amino acid transporter AVT1A [Source:UniProtKB/Swiss-Prot;Acc:O80668]","protein_coding"
"At2g43630","No alias","Arabidopsis thaliana","Nucleusenvelope protein [Source:UniProtKB/TrEMBL;Acc:Q8VYY8]","protein_coding"
"At3g02530","No alias","Arabidopsis thaliana","T-complex protein 1 subunit zeta 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M888]","protein_coding"
"At3g04770","No alias","Arabidopsis thaliana","40S ribosomal protein SA [Source:UniProtKB/TrEMBL;Acc:F4J4W3]","protein_coding"
"At3g09630","No alias","Arabidopsis thaliana","60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]","protein_coding"
"At3g12270","No alias","Arabidopsis thaliana","Probable protein arginine N-methyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVD6]","protein_coding"
"At3g12390","No alias","Arabidopsis thaliana","Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]","protein_coding"
"At3g13310","No alias","Arabidopsis thaliana","At3g13310 [Source:UniProtKB/TrEMBL;Acc:Q9LTT7]","protein_coding"
"At3g15590","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At3g15590, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP6]","protein_coding"
"At3g15660","No alias","Arabidopsis thaliana","GRX4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHP8]","protein_coding"
"At3g16080","No alias","Arabidopsis thaliana","60S ribosomal protein L37-3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEM8]","protein_coding"
"At3g16780","No alias","Arabidopsis thaliana","60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]","protein_coding"
"At3g16810","No alias","Arabidopsis thaliana","Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]","protein_coding"
"At3g18210","No alias","Arabidopsis thaliana","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LV19]","protein_coding"
"At3g20050","No alias","Arabidopsis thaliana","T-complex protein 1 subunit alpha [Source:UniProtKB/Swiss-Prot;Acc:P28769]","protein_coding"
"At3g26410","No alias","Arabidopsis thaliana","tRNA modification 11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LIN4]","protein_coding"
"At3g27930","No alias","Arabidopsis thaliana","AT3g27930/K24A2_2 [Source:UniProtKB/TrEMBL;Acc:Q8W106]","protein_coding"
"At3g46210","No alias","Arabidopsis thaliana","Exosome complex exonuclease RRP46 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LX74]","protein_coding"
"At3g49990","No alias","Arabidopsis thaliana","At3g49990 [Source:UniProtKB/TrEMBL;Acc:Q9SN19]","protein_coding"
"At3g53430","No alias","Arabidopsis thaliana","60S ribosomal Protein L12-like [Source:UniProtKB/TrEMBL;Acc:Q0WW72]","protein_coding"
"At3g57660","No alias","Arabidopsis thaliana","DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]","protein_coding"
"At3g57940","No alias","Arabidopsis thaliana","RNA cytidine acetyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Q4]","protein_coding"
"At3g59670","No alias","Arabidopsis thaliana","Elongation factor [Source:UniProtKB/TrEMBL;Acc:Q56XZ5]","protein_coding"
"At3g61960","No alias","Arabidopsis thaliana","Serine/threonine-protein kinase ATG1a [Source:UniProtKB/Swiss-Prot;Acc:Q94C95]","protein_coding"
"At3g62940","No alias","Arabidopsis thaliana","Cysteine proteinases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYC7]","protein_coding"
"At4g02010","No alias","Arabidopsis thaliana","AT4g02010/T10M13_2 [Source:UniProtKB/TrEMBL;Acc:Q8L7V7]","protein_coding"
"At4g02060","No alias","Arabidopsis thaliana","DNA replication licensing factor MCM7 [Source:UniProtKB/Swiss-Prot;Acc:P43299]","protein_coding"
"At4g03200","No alias","Arabidopsis thaliana","catalytics [Source:TAIR;Acc:AT4G03200]","protein_coding"
"At4g04670","No alias","Arabidopsis thaliana","tRNA wybutosine-synthesizing protein 2/3/4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4K1]","protein_coding"
"At4g10480","No alias","Arabidopsis thaliana","Putative alpha NAC [Source:UniProtKB/TrEMBL;Acc:Q0WWN5]","protein_coding"
"At4g10620","No alias","Arabidopsis thaliana","F3H7.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9ZSB8]","protein_coding"
"At4g12650","No alias","Arabidopsis thaliana","Transmembrane 9 superfamily member [Source:UniProtKB/TrEMBL;Acc:A0A178UTX6]","protein_coding"
"At4g21140","No alias","Arabidopsis thaliana","BEST Arabidopsis thaliana protein match is: copper ion binding (TAIR:AT4G05400.2); Has 41 Blast hits to 41 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). [Source:TAIR;Acc:AT4G21140]","protein_coding"
"At4g25210","No alias","Arabidopsis thaliana","GLABROUS1 enhancer-binding protein-like [Source:UniProtKB/Swiss-Prot;Acc:Q9SB42]","protein_coding"
"At4g26970","No alias","Arabidopsis thaliana","Aconitate hydratase [Source:UniProtKB/TrEMBL;Acc:A0A178UVE5]","protein_coding"
"At4g34910","No alias","Arabidopsis thaliana","DEAD-box ATP-dependent RNA helicase 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW44]","protein_coding"
"At5g03740","No alias","Arabidopsis thaliana","HDT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UP12]","protein_coding"
"At5g07320","No alias","Arabidopsis thaliana","Mitochondrial substrate carrier family protein [Source:UniProtKB/TrEMBL;Acc:Q9LY28]","protein_coding"
"At5g08020","No alias","Arabidopsis thaliana","Replication protein A 70 kDa DNA-binding subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9SD82]","protein_coding"
"At5g14580","No alias","Arabidopsis thaliana","Polyribonucleotide nucleotidyltransferase 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9S7G6]","protein_coding"
"At5g15700","No alias","Arabidopsis thaliana","DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KB75]","protein_coding"
"At5g24330","No alias","Arabidopsis thaliana","Histone-lysine N-methyltransferase ATXR6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNE9]","protein_coding"
"At5g26180","No alias","Arabidopsis thaliana","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE8]","protein_coding"
"At5g35530","No alias","Arabidopsis thaliana","40S ribosomal protein S3-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJA6]","protein_coding"
"At5g38720","No alias","Arabidopsis thaliana","unknown protein; Has 13419 Blast hits to 9093 proteins in 698 species: Archae - 38; Bacteria - 1038; Metazoa - 4949; Fungi - 1086; Plants - 485; Viruses - 44; Other Eukaryotes - 5779 (source: NCBI BLink). [Source:TAIR;Acc:AT5G38720]","protein_coding"
"At5g41190","No alias","Arabidopsis thaliana","RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]","protein_coding"
"At5g43080","No alias","Arabidopsis thaliana","Putative cyclin-A3-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH5]","protein_coding"
"At5g43745","No alias","Arabidopsis thaliana","Putative ion channel POLLUX-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q940Y9]","protein_coding"
"At5g46690","No alias","Arabidopsis thaliana","Transcription factor bHLH71 [Source:UniProtKB/Swiss-Prot;Acc:Q56XR0]","protein_coding"
"At5g48600","No alias","Arabidopsis thaliana","Structural maintenance of chromosomes protein [Source:UniProtKB/TrEMBL;Acc:F4K1S1]","protein_coding"
"At5g55730","No alias","Arabidopsis thaliana","Fasciclin-like arabinogalactan protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FM65]","protein_coding"
"At5g56950","No alias","Arabidopsis thaliana","Nucleosome assembly protein 1;3 [Source:UniProtKB/Swiss-Prot;Acc:Q94K07]","protein_coding"
"At5g66540","No alias","Arabidopsis thaliana","U3 small nucleolar ribonucleoprotein protein MPP10 [Source:UniProtKB/TrEMBL;Acc:Q9FJY5]","protein_coding"
"At5g67510","No alias","Arabidopsis thaliana","60S ribosomal protein L26-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJX2]","protein_coding"
"Bradi1g06280","No alias","Brachypodium distachyon","S-locus lectin protein kinase family protein","protein_coding"
"Bradi1g13777","No alias","Brachypodium distachyon","Transketolase family protein","protein_coding"
"Bradi1g17160","No alias","Brachypodium distachyon","poly(A) polymerase 3","protein_coding"
"Bradi1g71495","No alias","Brachypodium distachyon","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Bradi2g01350","No alias","Brachypodium distachyon","Aldolase superfamily protein","protein_coding"
"Bradi2g07093","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi2g14256","No alias","Brachypodium distachyon","CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein","protein_coding"
"Bradi2g16310","No alias","Brachypodium distachyon","cAMP-regulated phosphoprotein 19-related protein","protein_coding"
"Bradi2g23187","No alias","Brachypodium distachyon","dicer-like 3","protein_coding"
"Bradi2g32607","No alias","Brachypodium distachyon","Protein kinase superfamily protein","protein_coding"
"Bradi2g34300","No alias","Brachypodium distachyon","Glucose-6-phosphate/phosphate translocator-related","protein_coding"
"Bradi2g40100","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi2g40703","No alias","Brachypodium distachyon","RING/FYVE/PHD-type zinc finger family protein","protein_coding"
"Bradi2g53780","No alias","Brachypodium distachyon","Protein of unknown function (DUF399 and DUF3411)","protein_coding"
"Bradi2g57534","No alias","Brachypodium distachyon","NB-ARC domain-containing disease resistance protein","protein_coding"
"Bradi3g04176","No alias","Brachypodium distachyon","Leucine-rich receptor-like protein kinase family protein","protein_coding"
"Bradi3g07200","No alias","Brachypodium distachyon","Undecaprenyl pyrophosphate synthetase family protein","protein_coding"
"Bradi3g13640","No alias","Brachypodium distachyon","Major facilitator superfamily protein","protein_coding"
"Bradi3g20480","No alias","Brachypodium distachyon","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Bradi3g20520","No alias","Brachypodium distachyon","Translation initiation factor 2, small GTP-binding protein","protein_coding"
"Bradi3g22914","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi3g28875","No alias","Brachypodium distachyon","TRAF-like family protein","protein_coding"
"Bradi3g32020","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi3g35210","No alias","Brachypodium distachyon","Pentatricopeptide repeat (PPR-like) superfamily protein","protein_coding"
"Bradi3g44496","No alias","Brachypodium distachyon","plastid transcriptionally active 14","protein_coding"
"Bradi3g46970","No alias","Brachypodium distachyon","Dynein light chain type 1 family protein","protein_coding"
"Bradi3g52320","No alias","Brachypodium distachyon","Homeodomain-like superfamily protein","protein_coding"
"Bradi3g56710","No alias","Brachypodium distachyon","PIN domain-like family protein","protein_coding"
"Bradi4g03800","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi4g12970","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi4g14061","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi4g17244","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi4g31190","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi4g43441","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi4g43500","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi5g00990","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi5g01445","No alias","Brachypodium distachyon","AP2/B3-like transcriptional factor family protein","protein_coding"
"Bradi5g07810","No alias","Brachypodium distachyon","F-box family protein","protein_coding"
"Bradi5g10524","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi5g14290","No alias","Brachypodium distachyon","RNA-binding CRS1 / YhbY (CRM) domain protein","protein_coding"
"Bradi5g23932","No alias","Brachypodium distachyon","Plant protein of unknown function (DUF247)","protein_coding"
"Bradi5g26845","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi5g27061","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Brara.A00416.1","No alias","Brassica rapa","night-time repressor *(COR27)","protein_coding"
"Brara.A00668.1","No alias","Brassica rapa","deubiquitinase *(UBP24)","protein_coding"
"Brara.A01364.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A03140.1","No alias","Brassica rapa","copper insertion factor (COX11) of cytochrome c oxidase assembly","protein_coding"
"Brara.A03163.1","No alias","Brassica rapa","RNA editing factor *(MORF)","protein_coding"
"Brara.A03197.1","No alias","Brassica rapa","EC_3.1 hydrolase acting on ester bond & pectin methylesterase","protein_coding"
"Brara.A03258.1","No alias","Brassica rapa","methylation reader *(ECT)","protein_coding"
"Brara.A03285.1","No alias","Brassica rapa","component *(mS78/mS79) of small mitoribosomal-subunit proteome","protein_coding"
"Brara.A03696.1","No alias","Brassica rapa","LON-type protease","protein_coding"
"Brara.A03735.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.B00618.1","No alias","Brassica rapa","nuclear-encoded organellar RNA polymerase *(NEP)","protein_coding"
"Brara.B00620.1","No alias","Brassica rapa","SSU processome assembly factor *(IMP3)","protein_coding"
"Brara.B01912.1","No alias","Brassica rapa","MAPKKK-kinase protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Brara.B02068.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.B03801.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.B03814.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.C00151.1","No alias","Brassica rapa","subunit B of DNA gyrase complex","protein_coding"
"Brara.C00165.1","No alias","Brassica rapa","virus infection resistance factor *(BTR1)","protein_coding"
"Brara.C00496.1","No alias","Brassica rapa","component *(COG8) of COG (Conserved-Oligomeric Golgi) complex","protein_coding"
"Brara.C00845.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.C01043.1","No alias","Brassica rapa","SSU processome assembly factor *(FAP7/AAK6) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Brara.C01965.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.C02216.1","No alias","Brassica rapa","regulatory protein *(THAL) of rRNA transcription control","protein_coding"
"Brara.C02279.1","No alias","Brassica rapa","component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex","protein_coding"
"Brara.C02355.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.C02742.1","No alias","Brassica rapa","SSU processome assembly factor *(UTP21)","protein_coding"
"Brara.C02749.1","No alias","Brassica rapa","SSU processome assembly factor *(RRP9/YAO1)","protein_coding"
"Brara.C03093.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.C03437.1","No alias","Brassica rapa","scaffold component *(Nop56) of snoRNP rRNA methylation complex","protein_coding"
"Brara.C03519.1","No alias","Brassica rapa","EC_3.1 hydrolase acting on ester bond & pectin methylesterase","protein_coding"
"Brara.C03906.1","No alias","Brassica rapa","EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Brara.C04014.1","No alias","Brassica rapa","assembly factor (eIF1A) of eIF1","protein_coding"
"Brara.C04220.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.C04289.1","No alias","Brassica rapa","LRR-XI protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Brara.D00197.1","No alias","Brassica rapa","ribosome docking factor *(MDM38)","protein_coding"
"Brara.D00984.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.D01399.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.D01611.1","No alias","Brassica rapa","component *(SERRATE) of DCL1-HYL1 miRNA biogenesis complex","protein_coding"
"Brara.D01845.1","No alias","Brassica rapa","EC_5.2 cis-trans-isomerase","protein_coding"
"Brara.D01871.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.D01887.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.D02261.1","No alias","Brassica rapa","plastidial ribonucleoprotein *(CP29)","protein_coding"
"Brara.E00430.1","No alias","Brassica rapa","EC_3.2 glycosylase","protein_coding"
"Brara.E00477.1","No alias","Brassica rapa","translation elongation factor *(EF-G)","protein_coding"
"Brara.E00674.1","No alias","Brassica rapa","TFIIs transcription elongation factor","protein_coding"
"Brara.E01472.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.E01715.1","No alias","Brassica rapa","regulatory protein *(NCL) of rRNA transcription","protein_coding"
"Brara.E01722.1","No alias","Brassica rapa","group-II intron splicing RNA helicase *(PMH)","protein_coding"
"Brara.E02078.1","No alias","Brassica rapa","EC_2.1 transferase transferring one-carbon group & tRNA uridine-methyltransferase *(TRM2)","protein_coding"
"Brara.E02162.1","No alias","Brassica rapa","starch branching enzyme & EC_2.4 glycosyltransferase","protein_coding"
"Brara.E02180.1","No alias","Brassica rapa","solute transporter *(MTCC)","protein_coding"
"Brara.E02636.1","No alias","Brassica rapa","RNA editing factor *(MORF)","protein_coding"
"Brara.E02860.1","No alias","Brassica rapa","ribosomal protein arginine N-methyltransferase *(PRMT3)","protein_coding"
"Brara.E03242.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.E03395.1","No alias","Brassica rapa","telomeric dsDNA-binding protein","protein_coding"
"Brara.E03453.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.E03464.1","No alias","Brassica rapa","NAD-dependent glyceraldehyde 3-phosphate dehydrogenase & EC_1.2 oxidoreductase acting on aldehyde or oxo group of donor","protein_coding"
"Brara.F00358.1","No alias","Brassica rapa","bZIP class-A transcription factor","protein_coding"
"Brara.F00391.1","No alias","Brassica rapa","regulatory ubiquitin-protein ligase *(PRU2) & RING-H2-class ATL-subclass E3 ubiquitin ligase","protein_coding"
"Brara.F00431.1","No alias","Brassica rapa","chaperone *(Hsp70)","protein_coding"
"Brara.F00672.1","No alias","Brassica rapa","LIM-type transcription factor","protein_coding"
"Brara.F01312.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F01371.1","No alias","Brassica rapa","regulatory EIN2-stabilizing factor *(MHZ3)","protein_coding"
"Brara.F01453.1","No alias","Brassica rapa","tRNA pseudouridine synthase *(PUS10)","protein_coding"
"Brara.F01618.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F02052.1","No alias","Brassica rapa","pre-60S ribosomal subunit assembly factor *(SSF1)","protein_coding"
"Brara.F02071.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F02320.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F02453.1","No alias","Brassica rapa","EC_2.1 transferase transferring one-carbon group","protein_coding"
"Brara.F02896.1","No alias","Brassica rapa","NEK protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Brara.F02897.1","No alias","Brassica rapa","Trihelix-type transcription factor","protein_coding"
"Brara.F02928.1","No alias","Brassica rapa","small subunit *(NRPC15) of TFIIIf transcription factor module","protein_coding"
"Brara.F03104.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F03274.1","No alias","Brassica rapa","component *(TRM11) of TRM11-TRM112 tRNA guanosine-methyltransferase complex","protein_coding"
"Brara.F03762.1","No alias","Brassica rapa","C2H2 subclass IDD transcription factor","protein_coding"
"Brara.G00202.1","No alias","Brassica rapa","component *(NOC2) of ribosomal-subunit proteome nuclear export complexes","protein_coding"
"Brara.G00861.1","No alias","Brassica rapa","regulatory protein *(SEPALLATA) of floral meristem identity control & MADS/AGL-type transcription factor","protein_coding"
"Brara.G01251.1","No alias","Brassica rapa","SSU processome assembly factor *(MPP10)","protein_coding"
"Brara.G02029.1","No alias","Brassica rapa","RNA editing factor *(POCO)","protein_coding"
"Brara.G02623.1","No alias","Brassica rapa","component *(CSL4) of exosome EXO9 core complex","protein_coding"
"Brara.G02869.1","No alias","Brassica rapa","chorismate mutase & EC_5.4 intramolecular transferase","protein_coding"
"Brara.G03129.1","No alias","Brassica rapa","component *(NOC1) of ribosomal-subunit proteome nuclear export complex","protein_coding"
"Brara.G03320.1","No alias","Brassica rapa","plastid division FtsZ assembly factor *(ARC3)","protein_coding"
"Brara.G03388.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.G03402.1","No alias","Brassica rapa","EC_2.1 transferase transferring one-carbon group & sterol C-24 methyltransferase","protein_coding"
"Brara.G03601.1","No alias","Brassica rapa","component *(POLD3) of DNA polymerase delta complex","protein_coding"
"Brara.G03702.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.H00212.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.H00308.1","No alias","Brassica rapa","assembly factor CcsB of CCS cytochrome f/c6 maturation system (system II)","protein_coding"
"Brara.H00330.1","No alias","Brassica rapa","regulatory protein *(NCL) of rRNA transcription","protein_coding"
"Brara.H00482.1","No alias","Brassica rapa","RNA editing factor *(ORRM3)","protein_coding"
"Brara.H00907.1","No alias","Brassica rapa","AHL clade-B transcription factor","protein_coding"
"Brara.H01249.1","No alias","Brassica rapa","aspartate-tRNA ligase","protein_coding"
"Brara.H01373.1","No alias","Brassica rapa","arginine methyltransferase *(PRMT5/CAU1) & histone methylase *(CAU1/PRMT5)","protein_coding"
"Brara.H02531.1","No alias","Brassica rapa","ATP","protein_coding"
"Brara.H02641.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.H02665.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.H02760.1","No alias","Brassica rapa","tRNA cytidine acetyltransferase","protein_coding"
"Brara.I00655.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I00901.1","No alias","Brassica rapa","SSU processome assembly factor *(MPP10)","protein_coding"
"Brara.I01086.1","No alias","Brassica rapa","component *(mL103) of large mitoribosomal-subunit proteome & component *(mS78/mS79) of small mitoribosomal-subunit proteome","protein_coding"
"Brara.I01399.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I02241.1","No alias","Brassica rapa","regulatory protein *(EHD) involved in endocytic recycling","protein_coding"
"Brara.I03035.1","No alias","Brassica rapa","plastidial ribonucleoprotein *(CP29)","protein_coding"
"Brara.I03258.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I03636.1","No alias","Brassica rapa","plastidial ribonucleoprotein *(CP29)","protein_coding"
"Brara.I03945.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I05045.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I05051.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I05347.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I05439.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I05507.1","No alias","Brassica rapa","class XI myosin microfilament-based motor protein","protein_coding"
"Brara.I05532.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.J00964.1","No alias","Brassica rapa","component *(uL31m) of large mitoribosomal-subunit proteome","protein_coding"
"Brara.J01222.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.J01452.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.J01839.1","No alias","Brassica rapa","regulatory protein *(SBA) of mitochondrial nucleoid organization","protein_coding"
"Brara.J02010.1","No alias","Brassica rapa","phosphorolytic exoribonuclease *(PNP) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Brara.J02359.1","No alias","Brassica rapa","endoribonuclease *(MNU)","protein_coding"
"Brara.J02506.1","No alias","Brassica rapa","Prgrammed Cell Death suppressor *(BON)","protein_coding"
"Brara.J02725.1","No alias","Brassica rapa","pre-60S ribosomal subunit assembly factor *(NOP15)","protein_coding"
"Brara.J02746.1","No alias","Brassica rapa","starch-debranching pullulan-6-glucanohydrolase *(PU1)","protein_coding"
"Brara.K00022.1","No alias","Brassica rapa","SSU processome assembly factor *(SOF1)","protein_coding"
"Brara.K00626.1","No alias","Brassica rapa","clade D phosphatase","protein_coding"
"Brara.K01028.1","No alias","Brassica rapa","RNA editing factor *(MORF)","protein_coding"
"Brara.K01454.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Cre01.g000600","No alias","Chlamydomonas reinhardtii","WD-40 repeat family protein / notchless protein, putative","protein_coding"
"Cre01.g001501","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre01.g012350","No alias","Chlamydomonas reinhardtii","DNA polymerase V family","protein_coding"
"Cre01.g018950","No alias","Chlamydomonas reinhardtii","deoxyhypusine synthase","protein_coding"
"Cre01.g022350","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre01.g036600","No alias","Chlamydomonas reinhardtii","small RNA degrading nuclease 3","protein_coding"
"Cre01.g063267","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre01.g068377","No alias","Chlamydomonas reinhardtii","CCAAT-binding factor","protein_coding"
"Cre02.g082300","No alias","Chlamydomonas reinhardtii","Surfeit locus protein 6","protein_coding"
"Cre02.g095850","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre02.g096900","No alias","Chlamydomonas reinhardtii","splicing endonuclease 1","protein_coding"
"Cre02.g104650","No alias","Chlamydomonas reinhardtii","RNA-binding (RRM/RBD/RNP motifs) family protein","protein_coding"
"Cre02.g144001","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre03.g150350","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre03.g152950","No alias","Chlamydomonas reinhardtii","Pseudouridine synthase family protein","protein_coding"
"Cre03.g159950","No alias","Chlamydomonas reinhardtii","embryo sac development arrest 7","protein_coding"
"Cre03.g160350","No alias","Chlamydomonas reinhardtii","protein tyrosine kinase family protein","protein_coding"
"Cre03.g161800","No alias","Chlamydomonas reinhardtii","ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding","protein_coding"
"Cre03.g175000","No alias","Chlamydomonas reinhardtii","3\'-5\'-exoribonuclease family protein","protein_coding"
"Cre03.g182950","No alias","Chlamydomonas reinhardtii","RNA helicase family protein","protein_coding"
"Cre03.g192850","No alias","Chlamydomonas reinhardtii","Domain of unknown function (DUF1726) ;Putative ATPase (DUF699)","protein_coding"
"Cre03.g192900","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre04.g214690","No alias","Chlamydomonas reinhardtii","ribonuclease Ps","protein_coding"
"Cre04.g215350","No alias","Chlamydomonas reinhardtii","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"Cre04.g218300","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre04.g222950","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre04.g223600","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre04.g229948","No alias","Chlamydomonas reinhardtii","FMN-linked oxidoreductases superfamily protein","protein_coding"
"Cre06.g254150","No alias","Chlamydomonas reinhardtii","periodic tryptophan protein 2","protein_coding"
"Cre06.g255950","No alias","Chlamydomonas reinhardtii","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"Cre06.g260850","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre06.g273413","No alias","Chlamydomonas reinhardtii","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding"
"Cre06.g277050","No alias","Chlamydomonas reinhardtii","ARM repeat superfamily protein","protein_coding"
"Cre06.g278171","No alias","Chlamydomonas reinhardtii","Protein of unknown function (DUF506)","protein_coding"
"Cre06.g278175","No alias","Chlamydomonas reinhardtii","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"Cre06.g282400","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre06.g285100","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre07.g315200","No alias","Chlamydomonas reinhardtii","NRAMP metal ion transporter family protein","protein_coding"
"Cre07.g323450","No alias","Chlamydomonas reinhardtii","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding"
"Cre07.g330350","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre07.g344050","No alias","Chlamydomonas reinhardtii","Transducin family protein / WD-40 repeat family protein","protein_coding"
"Cre07.g347400","No alias","Chlamydomonas reinhardtii","D111/G-patch domain-containing protein","protein_coding"
"Cre07.g349300","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre07.g351300","No alias","Chlamydomonas reinhardtii","Class II aaRS and biotin synthetases superfamily protein","protein_coding"
"Cre08.g370601","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre09.g391652","No alias","Chlamydomonas reinhardtii","Noc2p family","protein_coding"
"Cre09.g394399","No alias","Chlamydomonas reinhardtii","Sas10/U3 ribonucleoprotein (Utp) family protein","protein_coding"
"Cre09.g394550","No alias","Chlamydomonas reinhardtii","Phosphoribosyltransferase family protein","protein_coding"
"Cre09.g395600","No alias","Chlamydomonas reinhardtii","GTP1/OBG family protein","protein_coding"
"Cre09.g398550","No alias","Chlamydomonas reinhardtii","cell division cycle 48C","protein_coding"
"Cre09.g400550","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre09.g400627","No alias","Chlamydomonas reinhardtii","Polyketide cyclase / dehydrase and lipid transport protein","protein_coding"
"Cre09.g401663","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre09.g410500","No alias","Chlamydomonas reinhardtii","Nucleotidyltransferase family protein","protein_coding"
"Cre09.g415200","No alias","Chlamydomonas reinhardtii","MIF4G domain-containing protein / MA3 domain-containing protein","protein_coding"
"Cre10.g418400","No alias","Chlamydomonas reinhardtii","CTC-interacting domain 7","protein_coding"
"Cre10.g420900","No alias","Chlamydomonas reinhardtii","DEA(D/H)-box RNA helicase family protein","protein_coding"
"Cre10.g428750","No alias","Chlamydomonas reinhardtii","RNA binding;RNA binding","protein_coding"
"Cre10.g442000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre10.g442250","No alias","Chlamydomonas reinhardtii","ARM repeat superfamily protein","protein_coding"
"Cre10.g445600","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre10.g454650","No alias","Chlamydomonas reinhardtii","SIN-like family protein","protein_coding"
"Cre10.g459600","No alias","Chlamydomonas reinhardtii","CCAAT-binding factor","protein_coding"
"Cre10.g461000","No alias","Chlamydomonas reinhardtii","ARM repeat superfamily protein","protein_coding"
"Cre10.g464264","No alias","Chlamydomonas reinhardtii","Acyl-CoA N-acyltransferases (NAT) superfamily protein","protein_coding"
"Cre10.g466250","No alias","Chlamydomonas reinhardtii","transducin family protein / WD-40 repeat family protein","protein_coding"
"Cre11.g478950","No alias","Chlamydomonas reinhardtii","U3 ribonucleoprotein (Utp) family protein","protein_coding"
"Cre12.g497101","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g512250","No alias","Chlamydomonas reinhardtii","Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain","protein_coding"
"Cre12.g513701","No alias","Chlamydomonas reinhardtii","hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases","protein_coding"
"Cre12.g519550","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g529500","No alias","Chlamydomonas reinhardtii","FtsJ-like methyltransferase family protein","protein_coding"
"Cre12.g540200","No alias","Chlamydomonas reinhardtii","DEA(D/H)-box RNA helicase family protein","protein_coding"
"Cre12.g542800","No alias","Chlamydomonas reinhardtii","nuclear RNA polymerase C2","protein_coding"
"Cre12.g546650","No alias","Chlamydomonas reinhardtii","ubiquitin carrier protein 7","protein_coding"
"Cre13.g576350","No alias","Chlamydomonas reinhardtii","Prefoldin chaperone subunit family protein","protein_coding"
"Cre14.g608500","No alias","Chlamydomonas reinhardtii","programmed cell death 2 C-terminal domain-containing protein","protein_coding"
"Cre14.g613200","No alias","Chlamydomonas reinhardtii","plastid transcriptionally active 17","protein_coding"
"Cre14.g626634","No alias","Chlamydomonas reinhardtii","Met-10+ like family protein / kelch repeat-containing protein","protein_coding"
"Cre14.g632176","No alias","Chlamydomonas reinhardtii","myb family transcription factor","protein_coding"
"Cre14.g633400","No alias","Chlamydomonas reinhardtii","RNA-binding (RRM/RBD/RNP motifs) family protein","protein_coding"
"Cre15.g640250","No alias","Chlamydomonas reinhardtii","nonsense-mediated mRNA decay NMD3 family protein","protein_coding"
"Cre16.g658526","No alias","Chlamydomonas reinhardtii","non-intrinsic ABC protein 11","protein_coding"
"Cre16.g659600","No alias","Chlamydomonas reinhardtii","binding","protein_coding"
"Cre16.g661588","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre16.g680944","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre16.g684900","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre16.g685200","No alias","Chlamydomonas reinhardtii","nucleotide binding;nucleic acid binding;RNA binding","protein_coding"
"Cre16.g689311","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre17.g721650","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre17.g747347","No alias","Chlamydomonas reinhardtii","GTP-binding family protein","protein_coding"
"Cre26.g756597","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"evm.model.contig_2015.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2016.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2018.3","No alias","Porphyridium purpureum","(at1g52160 : 330.0) Encodes a tRNase Z.; tRNAse Z3 (TRZ3); BEST Arabidopsis thaliana protein match is: tRNAse Z4 (TAIR:AT3G16260.1); Has 6463 Blast hits to 4305 proteins in 1644 species: Archae - 441; Bacteria - 4471; Metazoa - 273; Fungi - 252; Plants - 107; Viruses - 0; Other Eukaryotes - 919 (source: NCBI BLink). & (reliability: 660.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2020.7","No alias","Porphyridium purpureum","(at1g20370 : 101.0) Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA, C-terminal (InterPro:IPR020095), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT1G76120.1); Has 3883 Blast hits to 3550 proteins in 1359 species: Archae - 140; Bacteria - 2302; Metazoa - 346; Fungi - 312; Plants - 197; Viruses - 0; Other Eukaryotes - 586 (source: NCBI BLink). & (reliability: 202.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2031.10","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2036.8","No alias","Porphyridium purpureum","(at3g10350 : 227.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cellular metal ion homeostasis, anion transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, anion-transporting (InterPro:IPR003348); BEST Arabidopsis thaliana protein match is: Anion-transporting ATPase (TAIR:AT5G60730.1). & (reliability: 428.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2062.23","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2084.4","No alias","Porphyridium purpureum","(at3g49660 : 178.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: G-protein coupled receptor protein signaling pathway; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 118516 Blast hits to 43755 proteins in 1024 species: Archae - 92; Bacteria - 12360; Metazoa - 47439; Fungi - 25856; Plants - 15887; Viruses - 9; Other Eukaryotes - 16873 (source: NCBI BLink). & (p93107|pf20_chlre : 150.0) Flagellar WD repeat protein PF20 - Chlamydomonas reinhardtii & (reliability: 356.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2084.5","No alias","Porphyridium purpureum","(at3g49660 : 181.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: G-protein coupled receptor protein signaling pathway; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 118516 Blast hits to 43755 proteins in 1024 species: Archae - 92; Bacteria - 12360; Metazoa - 47439; Fungi - 25856; Plants - 15887; Viruses - 9; Other Eukaryotes - 16873 (source: NCBI BLink). & (p93107|pf20_chlre : 164.0) Flagellar WD repeat protein PF20 - Chlamydomonas reinhardtii & (reliability: 336.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2085.12","No alias","Porphyridium purpureum","(at5g23630 : 753.0) A member of the eukaryotic type V subfamily (P5) of P-type ATPase cation pumps; MIA is most similar to the human P5 ATPase ATY2(44% identity) and to Spf1p from S. cerevisiae (41% identity). Highly abundant in the endoplasmic reticulum and small vesicles of developing pollen grains and tapetum cells. T-DNA insertional mutants of MIA suffer from imbalances in cation homeostasis and exhibit a severe reduction in fertility. Mutant microspores fail to separate from tetrads and pollen grains are fragile with an abnormal morphology and altered cell wall structure.  MIA is also named PDR2 and was shown to be required for proper expression of SCARECROW (SCR), a key regulator of root patterning, and for stem-cell maintenance in Pi-deprived roots.; phosphate deficiency response 2 (PDR2); FUNCTIONS IN: cation-transporting ATPase activity; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, unknown pump specificity (type V) (InterPro:IPR006544), ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: calcium ATPase 2 (TAIR:AT4G37640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1506.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2086.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2086.5","No alias","Porphyridium purpureum","(at4g38470 : 207.0) ACT-like protein tyrosine kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation, metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Amino acid-binding ACT (InterPro:IPR002912), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-like, ATMRK (InterPro:IPR015783), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: ACT-like protein tyrosine kinase family protein (TAIR:AT4G35780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p17801|kpro_maize : 110.0) Putative receptor protein kinase ZmPK1 precursor (EC 2.7.11.1) - Zea mays (Maize) & (reliability: 414.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2104.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2119.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2126.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2139.11","No alias","Porphyridium purpureum","(at3g26570 : 182.0) low affinity phosphate transporter; phosphate transporter 2;1 (PHT2;1); FUNCTIONS IN: low affinity phosphate transmembrane transporter activity; INVOLVED IN: phosphate transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphate transporter (InterPro:IPR001204); Has 12859 Blast hits to 5765 proteins in 1814 species: Archae - 502; Bacteria - 8606; Metazoa - 781; Fungi - 657; Plants - 230; Viruses - 6; Other Eukaryotes - 2077 (source: NCBI BLink). & (reliability: 364.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2139.27","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2149.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2150.12","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2194.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2259.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2262.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2262.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2285.6","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding"
"evm.model.contig_2295.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2316.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2350.5","No alias","Porphyridium purpureum","(at5g65560 : 173.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G77340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q76c99|rf1_orysa : 167.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 316.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2359.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2494.32","No alias","Porphyridium purpureum","(at5g66540 : 129.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 258.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2499.8","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2502.12","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2502.17","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2502.18","No alias","Porphyridium purpureum","(at2g22400 : 307.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G40000.1); Has 8976 Blast hits to 8942 proteins in 2412 species: Archae - 298; Bacteria - 6215; Metazoa - 583; Fungi - 307; Plants - 251; Viruses - 0; Other Eukaryotes - 1322 (source: NCBI BLink). & (reliability: 614.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2511.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3387.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3387.7","No alias","Porphyridium purpureum","(at5g14100 : 107.0) member of NAP subfamily; non-intrinsic ABC protein 14 (NAP14); FUNCTIONS IN: transporter activity; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439); BEST Arabidopsis thaliana protein match is: ABC transporter family protein (TAIR:AT4G33460.1); Has 403186 Blast hits to 364909 proteins in 4058 species: Archae - 7357; Bacteria - 322932; Metazoa - 7473; Fungi - 4759; Plants - 4437; Viruses - 20; Other Eukaryotes - 56208 (source: NCBI BLink). & (q9g4f5|cysa_cucsa : 92.4) Sulfate/thiosulfate import ATP-binding protein cysA (EC 3.6.3.25) (Sulfate-transporting ATPase) - Cucumis sativus (Cucumber) & (reliability: 214.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3393.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3397.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3400.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3402.14","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3416.7","No alias","Porphyridium purpureum","(q2r1u4|ck5p1_orysa : 434.0) CDK5RAP1-like protein - Oryza sativa (Rice) & (at4g36390 : 410.0) Methylthiotransferase; FUNCTIONS IN: 4 iron, 4 sulfur cluster binding, iron-sulfur cluster binding, transferase activity, catalytic activity; INVOLVED IN: RNA modification, tRNA modification; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methylthiotransferase (InterPro:IPR005839), tRNA-i(6)A37 modification enzyme MiaB (InterPro:IPR006463), Methylthiotransferase, conserved site (InterPro:IPR020612), Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Methylthiotransferase, N-terminal (InterPro:IPR013848), Radical SAM (InterPro:IPR007197), Deoxyribonuclease/rho motif-related TRAM (InterPro:IPR002792); BEST Arabidopsis thaliana protein match is: Methylthiotransferase (TAIR:AT1G72090.1); Has 15610 Blast hits to 15591 proteins in 2425 species: Archae - 356; Bacteria - 9631; Metazoa - 288; Fungi - 1; Plants - 108; Viruses - 0; Other Eukaryotes - 5226 (source: NCBI BLink). & (reliability: 820.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3423.19","No alias","Porphyridium purpureum","(at4g33650 : 318.0) Encodes a protein with high sequence similarity to the dynamin superfamily.  Among those members ADL2 was most closely related to Dnm1p of yeast and likely a member of the Vps1p subfamily. Widely expressed in various tissues with highest expression in flower tissues. Localizes to the chloroplast, mitochondrion and peroxisome. Involved in peroxisome and mitochondria fission in combination with DRP3B.; dynamin-related protein 3A (DRP3A); CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), GTPase effector domain, GED (InterPro:IPR020850), Dynamin, GTPase region, conserved site (InterPro:IPR019762), Dynamin, GTPase domain (InterPro:IPR001401), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: dynamin related protein (TAIR:AT2G14120.1). & (reliability: 636.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3443.8","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3448.7","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3451.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3453.3","No alias","Porphyridium purpureum","(at2g28880 : 463.0) embryo defective 1997 (emb1997); FUNCTIONS IN: oxo-acid-lyase activity, catalytic activity, anthranilate synthase activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Anthranilate synthase, glutamine amidotransferase domain (InterPro:IPR006221), Carbamoyl phosphate synthase, GATase domain (InterPro:IPR001317), Anthranilate synthase component I, N-terminal (InterPro:IPR006805), Chorismate binding, C-terminal (InterPro:IPR015890), ADC synthase (InterPro:IPR005801), Para-aminobenzoate synthase, component I (InterPro:IPR005802), Glutamine amidotransferase type 1 (InterPro:IPR017926), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: anthranilate synthase 2 (TAIR:AT2G29690.1); Has 26955 Blast hits to 26481 proteins in 3128 species: Archae - 525; Bacteria - 17829; Metazoa - 510; Fungi - 766; Plants - 261; Viruses - 0; Other Eukaryotes - 7064 (source: NCBI BLink). & (reliability: 926.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3478.13","No alias","Porphyridium purpureum","(at5g06550 : 329.0) CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species: Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). & (reliability: 658.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3490.17","No alias","Porphyridium purpureum","(at1g22882 : 94.7) Galactose-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Sad1/UNC-like, C-terminal (InterPro:IPR012919), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Galactose-binding protein (TAIR:AT1G71360.1); Has 2190 Blast hits to 1928 proteins in 337 species: Archae - 60; Bacteria - 185; Metazoa - 803; Fungi - 277; Plants - 164; Viruses - 19; Other Eukaryotes - 682 (source: NCBI BLink). & (reliability: 189.4) &  (original description: no original description)","protein_coding"
"evm.model.contig_3509.5","No alias","Porphyridium purpureum","(at5g52790 : 181.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein with a domain of unknown function (DUF21) (TAIR:AT2G14520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 362.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3592.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3624.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3627.2","No alias","Porphyridium purpureum","(at4g31210 : 301.0) DNA topoisomerase, type IA, core; FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding; INVOLVED IN: DNA topological change, DNA unwinding involved in replication, DNA metabolic process; LOCATED IN: chromosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IA, zn finger (InterPro:IPR013498), DNA topoisomerase, type IA, core (InterPro:IPR000380), DNA topoisomerase, type IA, DNA-binding (InterPro:IPR003602), DNA topoisomerase, type IA, domain 2 (InterPro:IPR003601), DNA topoisomerase, type IA, central (InterPro:IPR013497), DNA topoisomerase, type IA, central region, subdomain 3 (InterPro:IPR013826), DNA topoisomerase I, bacterial-type (InterPro:IPR005733), Toprim domain, subgroup (InterPro:IPR006154), DNA topoisomerase, type IA, central region, subdomain 1 (InterPro:IPR013824), Toprim domain (InterPro:IPR006171); BEST Arabidopsis thaliana protein match is: topoisomerase 3alpha (TAIR:AT5G63920.1); Has 21441 Blast hits to 18441 proteins in 2923 species: Archae - 440; Bacteria - 10015; Metazoa - 1777; Fungi - 750; Plants - 256; Viruses - 35; Other Eukaryotes - 8168 (source: NCBI BLink). & (reliability: 602.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3649.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3702.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_429.7","No alias","Porphyridium purpureum","(at2g26990 : 456.0) Represses photomorphogenesis and induces skotomorphogenesis in the dark.; FUSCA 12 (FUS12); INVOLVED IN: cullin deneddylation, photomorphogenesis, protein catabolic process; LOCATED IN: signalosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717), PCI/PINT associated module (InterPro:IPR013143); BEST Arabidopsis thaliana protein match is: non-ATPase subunit 9 (TAIR:AT1G29150.1); Has 881 Blast hits to 877 proteins in 239 species: Archae - 2; Bacteria - 9; Metazoa - 323; Fungi - 235; Plants - 190; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). & (reliability: 912.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_437.3","No alias","Porphyridium purpureum","(at4g06599 : 227.0) ubiquitin family protein; FUNCTIONS IN: phosphoprotein phosphatase activity; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), HAD-superfamily hydrolase, subfamily IIID (InterPro:IPR011943), NLI interacting factor (InterPro:IPR004274); Has 390 Blast hits to 384 proteins in 126 species: Archae - 0; Bacteria - 8; Metazoa - 131; Fungi - 51; Plants - 106; Viruses - 7; Other Eukaryotes - 87 (source: NCBI BLink). & (reliability: 454.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_437.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4401.3","No alias","Porphyridium purpureum","(at1g18260 : 91.3) HCP-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G73570.1); Has 24350 Blast hits to 8436 proteins in 1359 species: Archae - 0; Bacteria - 17163; Metazoa - 848; Fungi - 960; Plants - 547; Viruses - 27; Other Eukaryotes - 4805 (source: NCBI BLink). & (reliability: 182.6) &  (original description: no original description)","protein_coding"
"evm.model.contig_441.2","No alias","Porphyridium purpureum","(at2g03670 : 104.0) CDC48 - like protein  AAA-type ATPaseCell. division control protein 48 homolog B; cell division cycle 48B (CDC48B); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 56751 Blast hits to 29677 proteins in 3123 species: Archae - 2145; Bacteria - 19832; Metazoa - 8766; Fungi - 6476; Plants - 5731; Viruses - 66; Other Eukaryotes - 13735 (source: NCBI BLink). & (p54774|cdc48_soybn : 95.9) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 208.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4410.26","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4418.2","No alias","Porphyridium purpureum","(q6zdq1|agm1_orysa : 337.0) Phosphoacetylglucosamine mutase (EC 5.4.2.3) (PAGM) (Acetylglucosamine phosphomutase) (N-acetylglucosamine-phosphate mutase) - Oryza sativa (Rice) & (at5g18070 : 326.0) encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes).; DNA-DAMAGE-REPAIR/TOLERATION 101 (DRT101); FUNCTIONS IN: intramolecular transferase activity, phosphotransferases, phosphoacetylglucosamine mutase activity; INVOLVED IN: response to UV, photoreactive repair; LOCATED IN: cytosol, mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, C-terminal (InterPro:IPR005843), Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Phosphoacetylglucosamine mutase (InterPro:IPR016657), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); Has 6617 Blast hits to 6213 proteins in 2284 species: Archae - 117; Bacteria - 4667; Metazoa - 169; Fungi - 157; Plants - 47; Viruses - 0; Other Eukaryotes - 1460 (source: NCBI BLink). & (reliability: 652.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4426.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_443.8","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4432.20","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4438.16","No alias","Porphyridium purpureum","(at1g64600 : 99.0) methyltransferases;copper ion binding; FUNCTIONS IN: methyltransferase activity, copper ion binding; INVOLVED IN: translation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein Rsm22, bacterial-type (InterPro:IPR015324), Cytochrome c oxidase assembly protein CtaG/Cox11 (InterPro:IPR007533); Has 735 Blast hits to 687 proteins in 272 species: Archae - 0; Bacteria - 212; Metazoa - 195; Fungi - 160; Plants - 44; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). & (reliability: 198.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4438.25","No alias","Porphyridium purpureum","(p37384|dmc1_lillo : 322.0) Meiotic recombination protein DMC1 homolog - Lilium longiflorum (Trumpet lily) & (at3g22880 : 319.0) Expression of the AtDMC1 is restricted to pollen mother cells in anthers and to megaspore mother cells in ovules. Similar to meiosis-specific yeast DMC gene.; DISRUPTION OF MEIOTIC CONTROL 1 (DMC1); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, meiosis, chiasma assembly, reciprocal meiotic recombination, DNA metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), DNA repair Rad51/transcription factor NusA, alpha-helical (InterPro:IPR010995), ATPase, AAA+ type, core (InterPro:IPR003593), Meiotic recombinase Dmc1 (InterPro:IPR011940), DNA recombination and repair protein, RecA-like (InterPro:IPR016467), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587), DNA recombination and repair protein Rad51, C-terminal (InterPro:IPR013632); BEST Arabidopsis thaliana protein match is: RAS associated with diabetes protein 51 (TAIR:AT5G20850.1); Has 11998 Blast hits to 11924 proteins in 3797 species: Archae - 689; Bacteria - 8026; Metazoa - 742; Fungi - 447; Plants - 503; Viruses - 22; Other Eukaryotes - 1569 (source: NCBI BLink). & (reliability: 600.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4444.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4456.19","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4466.6","No alias","Porphyridium purpureum","(at1g03910 : 191.0) EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2). & (reliability: 382.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4467.19","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_448.26","No alias","Porphyridium purpureum","(at2g34970 : 186.0) Trimeric LpxA-like enzyme; FUNCTIONS IN: binding, transferase activity, translation initiation factor activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process, regulation of translational initiation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Armadillo-type fold (InterPro:IPR016024), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzyme (TAIR:AT4G18300.1); Has 8121 Blast hits to 7961 proteins in 1548 species: Archae - 574; Bacteria - 3735; Metazoa - 1296; Fungi - 469; Plants - 387; Viruses - 0; Other Eukaryotes - 1660 (source: NCBI BLink). & (reliability: 372.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4480.2","No alias","Porphyridium purpureum","(at2g37670 : 106.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G02430.1); Has 38438 Blast hits to 23319 proteins in 700 species: Archae - 52; Bacteria - 5411; Metazoa - 15006; Fungi - 8500; Plants - 4706; Viruses - 3; Other Eukaryotes - 4760 (source: NCBI BLink). & (reliability: 204.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_458.14","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_458.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_462.1","No alias","Porphyridium purpureum","(at2g17510 : 372.0) EMBRYO DEFECTIVE 2763 (EMB2763); FUNCTIONS IN: ribonuclease activity, RNA binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide binding protein, PINc (InterPro:IPR006596), Ribonuclease II/R (InterPro:IPR001900); BEST Arabidopsis thaliana protein match is: Ribonuclease II/R family protein (TAIR:AT1G77680.1). & (reliability: 744.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_469.15","No alias","Porphyridium purpureum","(at5g64270 : 858.0) splicing factor, putative; FUNCTIONS IN: binding; INVOLVED IN: mRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Splicing factor 3B subunit 1 (InterPro:IPR015016), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1716.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_482.16","No alias","Porphyridium purpureum","(at2g35450 : 158.0) catalytics;hydrolases; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidohydrolase 2 (InterPro:IPR006992); Has 1373 Blast hits to 1373 proteins in 381 species: Archae - 4; Bacteria - 1000; Metazoa - 6; Fungi - 6; Plants - 45; Viruses - 0; Other Eukaryotes - 312 (source: NCBI BLink). & (reliability: 316.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_497.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_516.9","No alias","Porphyridium purpureum","(at5g41790 : 89.0) encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light.; COP1-interactive protein 1 (CIP1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of protein import into nucleus; LOCATED IN: cytoskeleton, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G64330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 178.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_531.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_545.12","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_560.8","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_568.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_600.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_606.2","No alias","Porphyridium purpureum","(at3g21070 : 186.0) Encodes a protein with NAD(H) kinase activity.; NAD kinase 1 (NADK1); FUNCTIONS IN: NAD+ kinase activity, NADH kinase activity; INVOLVED IN: NADP biosynthetic process, response to virus, response to hydrogen peroxide, pyridine nucleotide biosynthetic process, response to ionizing radiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATP-NAD kinase, PpnK-type (InterPro:IPR016064), ATP-NAD/AcoX kinase (InterPro:IPR002504), ATP-NAD kinase, PpnK-type, all-beta (InterPro:IPR017437); BEST Arabidopsis thaliana protein match is: NAD kinase 2 (TAIR:AT1G21640.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q5jk52|nadk1_orysa : 175.0) Probable NAD kinase 1 (EC 2.7.1.23) - Oryza sativa (Rice) & (reliability: 372.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_664.3","No alias","Porphyridium purpureum","(at3g57300 : 386.0) Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family.  Functions as a positive regulator of DNA homologous recombination (HR).  In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type.  Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration.  INO80 was also shown to regulate a subset of the Arabidopsis transcriptome.; INO80 ortholog (INO80); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: somatic cell DNA recombination, positive regulation of DNA repair, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA binding domain, INO80 (InterPro:IPR020838), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein (TAIR:AT3G12810.1). & (q7g8y3|isw2_orysa : 258.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 772.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_669.4","No alias","Porphyridium purpureum","(at2g17250 : 174.0) EMBRYO DEFECTIVE 2762 (EMB2762); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding factor (InterPro:IPR005612); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 348.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_693.9","No alias","Porphyridium purpureum","(at4g31050 : 174.0) Biotin/lipoate A/B protein ligase family; FUNCTIONS IN: lipoyltransferase activity, octanoyltransferase activity, catalytic activity; INVOLVED IN: protein modification process, lipoate biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octanoyltransferase, conserved site (InterPro:IPR020605), Octanoyltransferase (InterPro:IPR000544), Biotin/lipoate A/B protein ligase (InterPro:IPR004143); BEST Arabidopsis thaliana protein match is: Biotin/lipoate A/B protein ligase family (TAIR:AT1G47578.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 348.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_703.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000037.25","No alias","Cyanophora paradoxa","(at1g30820 : 617.0) CTP synthase family protein; FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase family protein (TAIR:AT2G34890.1); Has 10946 Blast hits to 10907 proteins in 2949 species: Archae - 238; Bacteria - 5576; Metazoa - 256; Fungi - 232; Plants - 177; Viruses - 0; Other Eukaryotes - 4467 (source: NCBI BLink). & (reliability: 1234.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000076.89","No alias","Cyanophora paradoxa","(at1g15440 : 99.4) periodic tryptophan protein 2 (PWP2); FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Small-subunit processome, Utp12 (InterPro:IPR007148), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G11160.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 198.8) &  (original description: no original description)","protein_coding"
"evm.model.tig00000114.21","No alias","Cyanophora paradoxa","(at4g26600 : 466.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity, RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: nucleolus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), Nop2p (InterPro:IPR011023); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G55920.1); Has 64231 Blast hits to 30815 proteins in 2915 species: Archae - 495; Bacteria - 29426; Metazoa - 12322; Fungi - 6487; Plants - 2396; Viruses - 589; Other Eukaryotes - 12516 (source: NCBI BLink). & (reliability: 932.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000144.108","No alias","Cyanophora paradoxa","(at5g06550 : 251.0) CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species: Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). & (reliability: 502.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000144.74","No alias","Cyanophora paradoxa","(at5g52820 : 184.0) WD-40 repeat family protein / notchless protein, putative; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), NLE (InterPro:IPR012972), WD40 repeat (InterPro:IPR001680), G-protein, beta subunit (InterPro:IPR001632), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 368.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000144.75","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000169.11","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000215.62","No alias","Cyanophora paradoxa","(at2g37990 : 164.0) ribosome biogenesis regulatory protein (RRS1) family protein; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal biogenesis regulatory protein (InterPro:IPR007023); Has 425 Blast hits to 423 proteins in 207 species: Archae - 1; Bacteria - 2; Metazoa - 151; Fungi - 137; Plants - 58; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). & (reliability: 328.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000217.16","No alias","Cyanophora paradoxa","(at4g25730 : 263.0) FtsJ-like methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation, rRNA processing, rRNA methylation; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spb1, C-terminal (InterPro:IPR012920), Ribosomal RNA methyltransferase J (InterPro:IPR015507), Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G01230.1); Has 30028 Blast hits to 21157 proteins in 1975 species: Archae - 200; Bacteria - 7297; Metazoa - 8731; Fungi - 3085; Plants - 939; Viruses - 236; Other Eukaryotes - 9540 (source: NCBI BLink). & (reliability: 526.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000310.30","No alias","Cyanophora paradoxa","(at3g03920 : 95.1) H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein; FUNCTIONS IN: snoRNA binding, pseudouridine synthase activity, RNA binding; LOCATED IN: chloroplast thylakoid membrane, nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Gar1, eukaryote (InterPro:IPR021154), H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 (InterPro:IPR007504); BEST Arabidopsis thaliana protein match is: H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein (TAIR:AT5G18180.1); Has 27180 Blast hits to 8695 proteins in 812 species: Archae - 17; Bacteria - 4971; Metazoa - 11125; Fungi - 2086; Plants - 5744; Viruses - 428; Other Eukaryotes - 2809 (source: NCBI BLink). & (reliability: 190.2) &  (original description: no original description)","protein_coding"
"evm.model.tig00000310.61","No alias","Cyanophora paradoxa","(p48599|if4e1_orysa : 152.0) Eukaryotic translation initiation factor 4E-1 (eIF4E-1) (eIF-4E-1) (mRNA cap-binding protein) (eIF-4F 25 kDa subunit) (eIF-4F p26 subunit) - Oryza sativa (Rice) & (at4g18040 : 151.0) eIF4E protein.  The cum1 mutation affects the local spreading of CMV within the inoculated leaf, delaying accumulation of cucumber mosaic virus coat protein.; eukaryotic translation initiation factor 4E (EIF4E); CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 4E (eIF-4E) (InterPro:IPR001040), Eukaryotic translation initiation factor 4E (eIF-4E), conserved site (InterPro:IPR019770); BEST Arabidopsis thaliana protein match is: Eukaryotic initiation factor 4E protein (TAIR:AT1G29550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 302.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000350.47","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000350.7","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000361.52","No alias","Cyanophora paradoxa","(at4g32175 : 162.0) PNAS-3 related; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: PNAS-3 related (TAIR:AT2G25355.1); Has 535 Blast hits to 535 proteins in 248 species: Archae - 104; Bacteria - 0; Metazoa - 113; Fungi - 163; Plants - 59; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink). & (reliability: 324.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000383.51","No alias","Cyanophora paradoxa","(at5g60790 : 627.0) member of GCN subfamily; GENERAL CONTROL NON-REPRESSIBLE 1 (GCN1); FUNCTIONS IN: transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: general control non-repressible 3 (TAIR:AT1G64550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1254.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000388.46","No alias","Cyanophora paradoxa","(at3g56990 : 320.0) embryo sac development arrest 7 (EDA7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: nucleolus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), NUC153 (InterPro:IPR012580), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 640.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000388.65","No alias","Cyanophora paradoxa","(at4g25340 : 88.6) Encodes a member of the FKBP-type immunophilin family that functions as a histone chaparone. Binds to 18S rDNA and represses its expression.; FK506 BINDING PROTEIN 53 (FKBP53); CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT5G05420.1). & (reliability: 177.2) &  (original description: no original description)","protein_coding"
"evm.model.tig00000403.66","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000405.29","No alias","Cyanophora paradoxa","(at4g01560 : 280.0) maternal effect embryo arrest 49 (MEE49); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); BEST Arabidopsis thaliana protein match is: Ribosomal RNA processing Brix domain protein (TAIR:AT1G63780.1); Has 893 Blast hits to 882 proteins in 227 species: Archae - 2; Bacteria - 0; Metazoa - 265; Fungi - 337; Plants - 121; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink). & (reliability: 560.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000478.23","No alias","Cyanophora paradoxa","(at1g06720 : 305.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42440.1); Has 8329 Blast hits to 5822 proteins in 470 species: Archae - 49; Bacteria - 737; Metazoa - 2493; Fungi - 1253; Plants - 549; Viruses - 77; Other Eukaryotes - 3171 (source: NCBI BLink). & (reliability: 610.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000545.36","No alias","Cyanophora paradoxa","(at1g13160 : 272.0) ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function, nucleolar NUC130/133, N-terminal (InterPro:IPR012977), Armadillo-type fold (InterPro:IPR016024), SDA1 (InterPro:IPR007949); BEST Arabidopsis thaliana protein match is: SDA1 family protein (TAIR:AT4G31520.1); Has 29206 Blast hits to 13573 proteins in 931 species: Archae - 207; Bacteria - 10267; Metazoa - 6952; Fungi - 3668; Plants - 1163; Viruses - 549; Other Eukaryotes - 6400 (source: NCBI BLink). & (reliability: 544.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000553.10","No alias","Cyanophora paradoxa","(at3g57150 : 635.0) Encodes a putative pseudouridine synthase (NAP57).; homologue of NAP57 (NAP57); FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification, RNA processing; LOCATED IN: cytosol, nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), H/ACA ribonucleoprotein complex, subunit Cbf5 (InterPro:IPR004802), Pseudouridine synthase II, TruB, N-terminal (InterPro:IPR002501), Dyskerin-like (InterPro:IPR012960), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT5G14460.1); Has 114172 Blast hits to 55339 proteins in 3754 species: Archae - 551; Bacteria - 17094; Metazoa - 41477; Fungi - 11530; Plants - 5704; Viruses - 752; Other Eukaryotes - 37064 (source: NCBI BLink). & (reliability: 1270.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000553.15","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000553.33","No alias","Cyanophora paradoxa","(at3g51800 : 295.0) putative nuclear DNA-binding protein G2p (AtG2) mRNA,; ATG2; FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Proliferation-associated protein 1 (InterPro:IPR004545), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: methionine aminopeptidase 2A (TAIR:AT2G44180.1). & (reliability: 590.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000571.29","No alias","Cyanophora paradoxa","(at4g28200 : 144.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). & (reliability: 288.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000600.11","No alias","Cyanophora paradoxa","(at5g20160 : 121.0) Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: RNA binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote (InterPro:IPR002415), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT4G22380.1); Has 572 Blast hits to 572 proteins in 228 species: Archae - 12; Bacteria - 0; Metazoa - 202; Fungi - 143; Plants - 95; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink). & (reliability: 242.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000615.61","No alias","Cyanophora paradoxa","(at3g16810 : 157.0) Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.; pumilio 24 (PUM24); FUNCTIONS IN: RNA binding, binding; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 5 (TAIR:AT3G20250.1); Has 2337 Blast hits to 1306 proteins in 237 species: Archae - 0; Bacteria - 1; Metazoa - 1209; Fungi - 478; Plants - 404; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink). & (reliability: 314.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000615.67","No alias","Cyanophora paradoxa","(at4g28450 : 462.0) This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase; nucleotide binding;protein binding; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Sof1-like protein (InterPro:IPR007287), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 37337 Blast hits to 21127 proteins in 676 species: Archae - 38; Bacteria - 5948; Metazoa - 14528; Fungi - 7710; Plants - 4379; Viruses - 0; Other Eukaryotes - 4734 (source: NCBI BLink). & (reliability: 924.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000632.10","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000640.23","No alias","Cyanophora paradoxa","(at2g04845 : 174.0) Acyl-CoA N-acyltransferases (NAT) superfamily protein; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 393 Blast hits to 383 proteins in 188 species: Archae - 0; Bacteria - 98; Metazoa - 122; Fungi - 80; Plants - 36; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). & (reliability: 348.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000655.55","No alias","Cyanophora paradoxa","(at1g03360 : 192.0) ribosomal RNA processing 4 (RRP4); FUNCTIONS IN: exonuclease activity; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); Has 615 Blast hits to 615 proteins in 291 species: Archae - 147; Bacteria - 0; Metazoa - 136; Fungi - 134; Plants - 55; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). & (reliability: 384.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000711.42","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000769.35","No alias","Cyanophora paradoxa","(at2g34260 : 197.0) transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 394.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000802.56","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000852.2","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000880.12","No alias","Cyanophora paradoxa","(at3g22660 : 117.0) rRNA processing protein-related; CONTAINS InterPro DOMAIN/s: Eukaryotic rRNA processing (InterPro:IPR008610); Has 1021 Blast hits to 939 proteins in 244 species: Archae - 0; Bacteria - 62; Metazoa - 355; Fungi - 209; Plants - 58; Viruses - 0; Other Eukaryotes - 337 (source: NCBI BLink). & (reliability: 234.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000893.5","No alias","Cyanophora paradoxa","(at4g19610 : 150.0) nucleotide binding;nucleic acid binding;RNA binding; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition, domain 1 (InterPro:IPR003954); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G08695.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 300.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000944.38","No alias","Cyanophora paradoxa","(at5g06360 : 396.0) Ribosomal protein S8e family protein; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 792.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000989.39","No alias","Cyanophora paradoxa","(at5g22100 : 298.0) RNA cyclase family protein; FUNCTIONS IN: RNA-3'-phosphate cyclase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA 3'-terminal phosphate cyclase-like, conserved site (InterPro:IPR020719), RNA 3'-terminal phosphate cyclase-like (InterPro:IPR000228), RNA 3'-terminal phosphate cyclase, insert domain (InterPro:IPR013796), RNA 3'-terminal phosphate cyclase-like, eukaryotic (InterPro:IPR016443), RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (InterPro:IPR013792); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 596.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001049.16","No alias","Cyanophora paradoxa","(at5g52470 : 336.0) encodes a fibrillarin, a key nucleolar protein in eukaryotes which associates with box C/D small nucleolar RNAs (snoRNAs) directing 2'-O-ribose methylation of the rRNA. This gene also encodes a novel box C/D snoRNA, U60.1f in its fifth intron that accumulates in seedlings and that their targeted residue on the 25 S rRNA is methylated.; fibrillarin 1 (FIB1); FUNCTIONS IN: snoRNA binding; INVOLVED IN: RNA methylation, rRNA processing; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fibrillarin (InterPro:IPR000692); BEST Arabidopsis thaliana protein match is: fibrillarin 2 (TAIR:AT4G25630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 672.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001049.3","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001052.10","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001071.15","No alias","Cyanophora paradoxa","(at3g09720 : 417.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G63120.2); Has 47831 Blast hits to 47082 proteins in 3124 species: Archae - 967; Bacteria - 25249; Metazoa - 6167; Fungi - 4801; Plants - 2681; Viruses - 34; Other Eukaryotes - 7932 (source: NCBI BLink). & (p46942|db10_nicsy : 206.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 834.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001073.2","No alias","Cyanophora paradoxa","(at2g46230 : 236.0) PIN domain-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF652 (InterPro:IPR006984), Nucleotide binding protein, PINc (InterPro:IPR006596); BEST Arabidopsis thaliana protein match is: PIN domain-like family protein (TAIR:AT1G26530.1); Has 609 Blast hits to 609 proteins in 228 species: Archae - 22; Bacteria - 0; Metazoa - 231; Fungi - 162; Plants - 97; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). & (reliability: 472.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001187.14","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001206.16","No alias","Cyanophora paradoxa","(at1g52930 : 204.0) Ribosomal RNA processing Brix domain protein; CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); BEST Arabidopsis thaliana protein match is: Ribosomal RNA processing Brix domain protein (TAIR:AT3G15460.1); Has 418 Blast hits to 416 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 137; Plants - 66; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink). & (reliability: 408.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001215.14","No alias","Cyanophora paradoxa","(at3g07050 : 206.0) GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917), GNL3L/Grn1 putative GTPase (InterPro:IPR014813); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT1G52980.1); Has 11622 Blast hits to 10428 proteins in 1861 species: Archae - 158; Bacteria - 5948; Metazoa - 1715; Fungi - 910; Plants - 502; Viruses - 28; Other Eukaryotes - 2361 (source: NCBI BLink). & (reliability: 412.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001310.11","No alias","Cyanophora paradoxa","(at3g15080 : 165.0) Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1777 Blast hits to 1777 proteins in 250 species: Archae - 0; Bacteria - 24; Metazoa - 732; Fungi - 619; Plants - 217; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink). & (reliability: 330.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001366.4","No alias","Cyanophora paradoxa","(at3g10530 : 195.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), BING4, C-terminal (InterPro:IPR012952), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: MOS4-associated  complex 3B (TAIR:AT2G33340.2); Has 9286 Blast hits to 5748 proteins in 422 species: Archae - 16; Bacteria - 3151; Metazoa - 2206; Fungi - 2085; Plants - 594; Viruses - 0; Other Eukaryotes - 1234 (source: NCBI BLink). & (reliability: 390.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001545.8","No alias","Cyanophora paradoxa","(at4g07950 : 90.9) DNA-directed RNA polymerase, subunit M, archaeal; FUNCTIONS IN: in 6 functions; INVOLVED IN: RNA elongation, regulation of transcription, DNA-dependent, transcription, regulation of transcription; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), DNA-directed RNA polymerase, M/15kDa subunit (InterPro:IPR001529), DNA-directed RNA polymerase, subunit M, archaeal (InterPro:IPR006288), DNA-directed RNA polymerase M, 15kDa subunit, conserved site (InterPro:IPR019761); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase, subunit M, archaeal (TAIR:AT1G01210.1); Has 1132 Blast hits to 1132 proteins in 328 species: Archae - 242; Bacteria - 0; Metazoa - 282; Fungi - 291; Plants - 114; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink). & (reliability: 181.8) &  (original description: no original description)","protein_coding"
"evm.model.tig00020554.145","No alias","Cyanophora paradoxa","(at5g14050 : 296.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TBP-associated factor 5 (TAIR:AT5G25150.1); Has 6115 Blast hits to 4690 proteins in 400 species: Archae - 26; Bacteria - 2036; Metazoa - 1593; Fungi - 1149; Plants - 369; Viruses - 2; Other Eukaryotes - 940 (source: NCBI BLink). & (reliability: 592.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020554.20","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020554.21","No alias","Cyanophora paradoxa","(at4g02400 : 114.0) U3 ribonucleoprotein (Utp) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.2); Has 7468 Blast hits to 4514 proteins in 366 species: Archae - 14; Bacteria - 554; Metazoa - 2650; Fungi - 816; Plants - 392; Viruses - 146; Other Eukaryotes - 2896 (source: NCBI BLink). & (reliability: 228.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020554.23","No alias","Cyanophora paradoxa","(at1g61700 : 129.0) Protein of unknown function that is homologous to the At1g11475 locus that encodes a non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V. Homologous to budding yeast RPB10.; RNA polymerases N / 8 kDa subunit; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding; INVOLVED IN: transcription, DNA-dependent, transcription, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RNA polymerases, N/8kDa subunit (InterPro:IPR000268), RNA polymerases, subunit N, zinc binding site (InterPro:IPR020789), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: RNA polymerases N / 8 kDa subunit (TAIR:AT1G11475.1); Has 943 Blast hits to 943 proteins in 326 species: Archae - 263; Bacteria - 0; Metazoa - 146; Fungi - 184; Plants - 71; Viruses - 3; Other Eukaryotes - 276 (source: NCBI BLink). & (q39290|rpb10_brana : 125.0) DNA-directed RNA polymerase II 8.2 kDa polypeptide (EC 2.7.7.6) (RPB10) (RP10) (ABC10) - Brassica napus (Rape) & (reliability: 258.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020554.42","No alias","Cyanophora paradoxa","(at2g34357 : 327.0) ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Domain of unknown function, NUC173 (InterPro:IPR012978); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G23540.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 654.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020554.69","No alias","Cyanophora paradoxa","(at4g31420 : 164.0) Zinc finger protein 622; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: Zinc finger protein 622 (TAIR:AT2G24500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 328.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020557.9","No alias","Cyanophora paradoxa","(at3g57000 : 194.0) nucleolar essential protein-related; CONTAINS InterPro DOMAIN/s: Ribosomal biogenesis, methyltransferase,  EMG1/NEP1 (InterPro:IPR005304); Has 1079 Blast hits to 938 proteins in 280 species: Archae - 143; Bacteria - 12; Metazoa - 353; Fungi - 181; Plants - 69; Viruses - 2; Other Eukaryotes - 319 (source: NCBI BLink). & (reliability: 388.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020562.25","No alias","Cyanophora paradoxa","(at4g40000 : 302.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT2G22400.1); Has 8835 Blast hits to 8804 proteins in 2376 species: Archae - 282; Bacteria - 6104; Metazoa - 590; Fungi - 311; Plants - 234; Viruses - 0; Other Eukaryotes - 1314 (source: NCBI BLink). & (reliability: 604.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020592.9","No alias","Cyanophora paradoxa","(at5g26180 : 199.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G55920.1); Has 8801 Blast hits to 8742 proteins in 2315 species: Archae - 360; Bacteria - 6022; Metazoa - 655; Fungi - 388; Plants - 256; Viruses - 1; Other Eukaryotes - 1119 (source: NCBI BLink). & (reliability: 398.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020604.12","No alias","Cyanophora paradoxa","(at5g66540 : 162.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 324.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020675.101","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020684.38","No alias","Cyanophora paradoxa","(at5g05450 : 444.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G71370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q40468|if415_tobac : 166.0) Eukaryotic initiation factor 4A-15 (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A-15) (eIF-4A-15) - Nicotiana tabacum (Common tobacco) & (reliability: 856.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020684.42","No alias","Cyanophora paradoxa","(at4g15770 : 193.0) RNA binding; FUNCTIONS IN: RNA binding; INVOLVED IN: ribosome assembly, ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Ribosome biogenesis factor NIP7-like (InterPro:IPR005155), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Ribosome biogenesis factor, NIP7 (InterPro:IPR016686); Has 438 Blast hits to 438 proteins in 213 species: Archae - 5; Bacteria - 0; Metazoa - 151; Fungi - 132; Plants - 49; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink). & (reliability: 386.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020710.40","No alias","Cyanophora paradoxa","(at1g29320 : 100.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 10050 Blast hits to 5411 proteins in 439 species: Archae - 25; Bacteria - 1235; Metazoa - 2837; Fungi - 1519; Plants - 647; Viruses - 46; Other Eukaryotes - 3741 (source: NCBI BLink). & (reliability: 200.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020723.108","No alias","Cyanophora paradoxa","(at1g59760 : 938.0) RNA helicase, ATP-dependent, SK12/DOB1 protein; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DSH, C-terminal (InterPro:IPR012961), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), RNA helicase, ATP-dependent, SK12/DOB1 (InterPro:IPR016438), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase, ATP-dependent, SK12/DOB1 protein (TAIR:AT2G06990.1); Has 9909 Blast hits to 8438 proteins in 1290 species: Archae - 828; Bacteria - 3072; Metazoa - 1170; Fungi - 1231; Plants - 476; Viruses - 32; Other Eukaryotes - 3100 (source: NCBI BLink). & (reliability: 1876.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020848.30","No alias","Cyanophora paradoxa","(at5g42390 : 150.0) Insulinase (Peptidase family M16) family protein; FUNCTIONS IN: metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: Insulinase (Peptidase family M16) protein (TAIR:AT5G56730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 300.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020878.23","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020903.46","No alias","Cyanophora paradoxa","(q8s1z1|utp11_orysa : 174.0) Probable U3 small nucleolar RNA-associated protein 11 (U3 snoRNA-associated protein 11) - Oryza sativa (Rice) & (at3g60360 : 163.0) EMBRYO SAC DEVELOPMENT ARREST 14 (EDA14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: small-subunit processome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp11 (InterPro:IPR007144); Has 434 Blast hits to 428 proteins in 209 species: Archae - 4; Bacteria - 1; Metazoa - 127; Fungi - 141; Plants - 59; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink). & (reliability: 326.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020912.51","No alias","Cyanophora paradoxa","(at5g61770 : 257.0) PETER PAN-like protein (PPAN); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 514.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020912.53","No alias","Cyanophora paradoxa","(at1g60080 : 152.0) 3'-5'-exoribonuclease family protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: ribonuclease PH45A (TAIR:AT3G12990.3); Has 1508 Blast hits to 1508 proteins in 331 species: Archae - 402; Bacteria - 40; Metazoa - 363; Fungi - 232; Plants - 181; Viruses - 0; Other Eukaryotes - 290 (source: NCBI BLink). & (reliability: 304.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020927.46","No alias","Cyanophora paradoxa","(at5g50110 : 119.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: rRNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: rRNA small subunit methyltransferase G (InterPro:IPR003682); Has 6840 Blast hits to 6840 proteins in 2435 species: Archae - 0; Bacteria - 5096; Metazoa - 2; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 1704 (source: NCBI BLink). & (reliability: 238.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020927.8","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020943.85","No alias","Cyanophora paradoxa","(at3g16840 : 182.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 60083 Blast hits to 51461 proteins in 3186 species: Archae - 589; Bacteria - 20345; Metazoa - 13239; Fungi - 7387; Plants - 3446; Viruses - 273; Other Eukaryotes - 14804 (source: NCBI BLink). & (p46942|db10_nicsy : 93.2) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 364.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020961.62","No alias","Cyanophora paradoxa","(at5g14520 : 240.0) pescadillo-related; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: cell proliferation; LOCATED IN: nucleolus, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pescadillo, N-terminal (InterPro:IPR010613), BRCT (InterPro:IPR001357); Has 503 Blast hits to 494 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 173; Fungi - 168; Plants - 48; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink). & (reliability: 480.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021108.10","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021133.13","No alias","Cyanophora paradoxa","(at3g45890 : 244.0) Encodes RUS1 (root UVB sensitive 1), a protein that contains DUF647 (domain of unknown function 647), a domain highly conserved in eukaryotes.  The primary root of rus1 is hypersensitive to very low-fluence-rate (VLF) UVB.; ROOT UVB SENSITIVE 1 (RUS1); INVOLVED IN: response to UV-B, developmental process; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: lateral root, root apical meristem, callus, elongation zone, embryonic root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT1G13770.1); Has 458 Blast hits to 456 proteins in 133 species: Archae - 0; Bacteria - 2; Metazoa - 116; Fungi - 71; Plants - 198; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink). & (reliability: 488.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021168.21","No alias","Cyanophora paradoxa","(at5g15810 : 276.0) N2,N2-dimethylguanosine tRNA methyltransferase; FUNCTIONS IN: RNA binding, tRNA (guanine-N2-)-methyltransferase activity; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: N2,N2-dimethylguanosine tRNA methyltransferase (InterPro:IPR002905); BEST Arabidopsis thaliana protein match is: N2,N2-dimethylguanosine tRNA methyltransferase (TAIR:AT3G02320.1); Has 1017 Blast hits to 963 proteins in 359 species: Archae - 255; Bacteria - 70; Metazoa - 198; Fungi - 150; Plants - 103; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink). & (reliability: 552.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021179.21","No alias","Cyanophora paradoxa","(at4g05410 : 272.0) Encodes a nucleolar protein with seven   WD40-repeats that plays a role in embryo sac development and is critical for the correct positioning of the division plane of zygote and the apical cell lineage in Arabidopsis.  YAO may act by modulating nucleolar function, such as rRNA biogenesis, during early embryogenesis and gametogenesis.; YAOZHE (YAO); FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: acceptance of pollen, mitochondrial fission, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleolus, anaphase-promoting complex, small nucleolar ribonucleoprotein complex, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G21130.1); Has 47131 Blast hits to 24802 proteins in 761 species: Archae - 50; Bacteria - 6358; Metazoa - 18156; Fungi - 10195; Plants - 5539; Viruses - 94; Other Eukaryotes - 6739 (source: NCBI BLink). & (p93340|gblp_nicpl : 90.9) Guanine nucleotide-binding protein subunit beta-like protein - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (reliability: 540.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021179.22","No alias","Cyanophora paradoxa","(at2g01770 : 162.0) Encodes an iron transporter required for iron sequestration into vacuoles. Expressed in developing embryo and seed. Localized in the vacuolar membrane.; vacuolar iron transporter 1 (VIT1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF125, transmembrane (InterPro:IPR008217); Has 1947 Blast hits to 1945 proteins in 688 species: Archae - 106; Bacteria - 1196; Metazoa - 0; Fungi - 163; Plants - 191; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink). & (reliability: 324.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021234.17","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021293.22","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021319.57","No alias","Cyanophora paradoxa","(at3g27740 : 211.0) carbamoyl phosphate synthetase small subunit mRNA (carA),; carbamoyl phosphate synthetase A (CARA); FUNCTIONS IN: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity, catalytic activity; INVOLVED IN: cellular response to phosphate starvation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), Carbamoyl phosphate synthase, GATase domain (InterPro:IPR001317), Carbamoyl phosphate synthase, small subunit, N-terminal (InterPro:IPR002474), Glutamine amidotransferase type 1 (InterPro:IPR017926), Carbamoyl phosphate synthase, small subunit (InterPro:IPR006274), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); BEST Arabidopsis thaliana protein match is: anthranilate synthase beta subunit 1 (TAIR:AT1G25220.1); Has 28262 Blast hits to 23423 proteins in 4115 species: Archae - 591; Bacteria - 17320; Metazoa - 1741; Fungi - 716; Plants - 245; Viruses - 0; Other Eukaryotes - 7649 (source: NCBI BLink). & (reliability: 422.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021339.32","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021348.37","No alias","Cyanophora paradoxa","(at1g29940 : 144.0) Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A).; nuclear RNA polymerase A2 (NRPA2); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase I, Rpa2 specific (InterPro:IPR009674), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2 (TAIR:AT5G45140.1); Has 19116 Blast hits to 18561 proteins in 6776 species: Archae - 498; Bacteria - 7658; Metazoa - 537; Fungi - 3600; Plants - 1857; Viruses - 241; Other Eukaryotes - 4725 (source: NCBI BLink). & (reliability: 288.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021348.38","No alias","Cyanophora paradoxa","(at1g29940 : 348.0) Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A).; nuclear RNA polymerase A2 (NRPA2); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase I, Rpa2 specific (InterPro:IPR009674), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2 (TAIR:AT5G45140.1); Has 19116 Blast hits to 18561 proteins in 6776 species: Archae - 498; Bacteria - 7658; Metazoa - 537; Fungi - 3600; Plants - 1857; Viruses - 241; Other Eukaryotes - 4725 (source: NCBI BLink). & (reliability: 696.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021348.95","No alias","Cyanophora paradoxa","(at2g47420 : 310.0) Ribosomal RNA adenine dimethylase family protein; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA (adenine) methyltransferase activity; INVOLVED IN: rRNA modification, rRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine dimethylase (InterPro:IPR011530), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2); Has 9871 Blast hits to 9860 proteins in 3038 species: Archae - 214; Bacteria - 6519; Metazoa - 271; Fungi - 146; Plants - 120; Viruses - 0; Other Eukaryotes - 2601 (source: NCBI BLink). & (reliability: 620.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021350.31","No alias","Cyanophora paradoxa","(at3g05060 : 530.0) SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein; NOP56-like pre RNA processing ribonucleoprotein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing ribonucleoprotein, snoRNA-binding domain (InterPro:IPR002687), NOP5, N-terminal (InterPro:IPR012974), NOSIC (InterPro:IPR012976); BEST Arabidopsis thaliana protein match is: NOP56-like pre RNA processing ribonucleoprotein (TAIR:AT5G27120.1); Has 39712 Blast hits to 18529 proteins in 1244 species: Archae - 275; Bacteria - 3520; Metazoa - 14574; Fungi - 4183; Plants - 1688; Viruses - 262; Other Eukaryotes - 15210 (source: NCBI BLink). & (reliability: 1048.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021352.64","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021493.49","No alias","Cyanophora paradoxa","(q8l6j3|rpo2b_tobac : 377.0) DNA-directed RNA polymerase 2B, chloroplast/mitochondrial precursor (EC 2.7.7.6) (T7 bacteriophage-type single subunit RNA polymerase 2B) (NictaRpoT2-tom) - Nicotiana tabacum (Common tobacco) & (at2g24120 : 367.0) SCABRA 3 (SCA3); FUNCTIONS IN: DNA-directed RNA polymerase activity, protein binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, bacteriophage type (InterPro:IPR002092); BEST Arabidopsis thaliana protein match is: male gametophyte defective 3 (TAIR:AT1G68990.1); Has 1200 Blast hits to 1186 proteins in 332 species: Archae - 0; Bacteria - 40; Metazoa - 130; Fungi - 220; Plants - 200; Viruses - 136; Other Eukaryotes - 474 (source: NCBI BLink). & (reliability: 734.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021525.7","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021580.3","No alias","Cyanophora paradoxa","(at1g08410 : 162.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G27200.1); Has 7267 Blast hits to 7158 proteins in 1932 species: Archae - 109; Bacteria - 4700; Metazoa - 622; Fungi - 502; Plants - 285; Viruses - 0; Other Eukaryotes - 1049 (source: NCBI BLink). & (reliability: 308.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021589.16","No alias","Cyanophora paradoxa","(at3g04810 : 99.4) Encodes AtNek2, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.; NIMA-related kinase 2 (NEK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NIMA-related kinase 3 (TAIR:AT5G28290.1); Has 124376 Blast hits to 122221 proteins in 4182 species: Archae - 113; Bacteria - 14280; Metazoa - 45892; Fungi - 12262; Plants - 30619; Viruses - 487; Other Eukaryotes - 20723 (source: NCBI BLink). & (reliability: 198.8) &  (original description: no original description)","protein_coding"
"evm.model.tig00021721.13","No alias","Cyanophora paradoxa","(at2g42650 : 154.0) Ribosomal protein L1p/L10e family; FUNCTIONS IN: RNA binding; INVOLVED IN: RNA processing; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT3G58660.1); Has 1164 Blast hits to 1162 proteins in 304 species: Archae - 34; Bacteria - 0; Metazoa - 441; Fungi - 309; Plants - 224; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink). & (reliability: 308.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00022075.19","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00022075.32","No alias","Cyanophora paradoxa","(at1g77030 : 499.0) hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases; FUNCTIONS IN: in 6 functions; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DBP10CT (InterPro:IPR012541), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 42888 Blast hits to 42073 proteins in 3063 species: Archae - 831; Bacteria - 21864; Metazoa - 5973; Fungi - 4375; Plants - 2654; Viruses - 31; Other Eukaryotes - 7160 (source: NCBI BLink). & (q41741|if4a_maize : 174.0) Eukaryotic initiation factor 4A (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A) (eIF-4A) - Zea mays (Maize) & (reliability: 998.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00022075.45","No alias","Cyanophora paradoxa","(at2g43650 : 99.0) EMBRYO DEFECTIVE 2777 (EMB2777); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: gene silencing; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Sas10/Utp3/C1D (InterPro:IPR007146), Something about silencing protein 10 (Sas10), C-terminal (InterPro:IPR018972); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28230.2); Has 14657 Blast hits to 10395 proteins in 729 species: Archae - 127; Bacteria - 2247; Metazoa - 4743; Fungi - 2020; Plants - 661; Viruses - 159; Other Eukaryotes - 4700 (source: NCBI BLink). & (reliability: 191.0) &  (original description: no original description)","protein_coding"
"Glyma.01G003600","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.01G124300","No alias","Glycine max","Ribosomal protein S4 (RPS4A) family protein","protein_coding"
"Glyma.01G162800","No alias","Glycine max","aconitase 1","protein_coding"
"Glyma.01G209800","No alias","Glycine max","DNAJ heat shock N-terminal domain-containing protein","protein_coding"
"Glyma.02G000600","No alias","Glycine max","PENTATRICOPEPTIDE REPEAT 596","protein_coding"
"Glyma.02G115700","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.02G184300","No alias","Glycine max","NB-ARC domain-containing disease resistance protein","protein_coding"
"Glyma.02G243800","No alias","Glycine max","zinc ion binding","protein_coding"
"Glyma.02G261700","No alias","Glycine max","Integrase-type DNA-binding superfamily protein","protein_coding"
"Glyma.02G298600","No alias","Glycine max","cytochrome P450, family 71, subfamily B, polypeptide 37","protein_coding"
"Glyma.02G303300","No alias","Glycine max","seed imbibition 1","protein_coding"
"Glyma.02G305200","No alias","Glycine max","Nucleoporin, Nup133/Nup155-like","protein_coding"
"Glyma.03G055500","No alias","Glycine max","metallopeptidase M24 family protein","protein_coding"
"Glyma.03G070100","No alias","Glycine max","NAD(P)-linked oxidoreductase superfamily protein","protein_coding"
"Glyma.03G150600","No alias","Glycine max","GTP binding Elongation factor Tu family protein","protein_coding"
"Glyma.03G173900","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.03G186500","No alias","Glycine max","transducin family protein / WD-40 repeat family protein","protein_coding"
"Glyma.03G190900","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.03G210700","No alias","Glycine max","Phototropic-responsive NPH3 family protein","protein_coding"
"Glyma.03G220700","No alias","Glycine max","Carbohydrate-binding-like fold","protein_coding"
"Glyma.03G241800","No alias","Glycine max","gamma histone variant H2AX","protein_coding"
"Glyma.03G251600","No alias","Glycine max","rotamase cyclophilin 2","protein_coding"
"Glyma.04G007000","No alias","Glycine max","mitochondrial editing factor  22","protein_coding"
"Glyma.04G007400","No alias","Glycine max","FMN-linked oxidoreductases superfamily protein","protein_coding"
"Glyma.04G010200","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.04G018100","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.04G046800","No alias","Glycine max","Uncharacterised conserved protein UCP031279","protein_coding"
"Glyma.04G124900","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.04G133900","No alias","Glycine max","protein arginine methyltransferase 3","protein_coding"
"Glyma.04G170400","No alias","Glycine max","NAP1-related protein 2","protein_coding"
"Glyma.04G178400","No alias","Glycine max","ADP-glucose pyrophosphorylase family protein","protein_coding"
"Glyma.04G194600","No alias","Glycine max","RNA-metabolising metallo-beta-lactamase family protein","protein_coding"
"Glyma.04G200700","No alias","Glycine max","fibrillarin 2","protein_coding"
"Glyma.04G222900","No alias","Glycine max","Nucleic acid-binding, OB-fold-like protein","protein_coding"
"Glyma.04G223300","No alias","Glycine max","WRKY DNA-binding protein 70","protein_coding"
"Glyma.04G228300","No alias","Glycine max","pseudo-response regulator 5","protein_coding"
"Glyma.04G230600","No alias","Glycine max","growth-regulating factor 7","protein_coding"
"Glyma.05G038800","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.05G102300","No alias","Glycine max","ARM-repeat/Tetratricopeptide repeat (TPR)-like protein","protein_coding"
"Glyma.05G121000","No alias","Glycine max","methyltransferases;nucleic acid binding","protein_coding"
"Glyma.05G145000","No alias","Glycine max","multidrug resistance-associated protein 3","protein_coding"
"Glyma.05G173000","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.05G221500","No alias","Glycine max","Homeodomain-like transcriptional regulator","protein_coding"
"Glyma.05G248200","No alias","Glycine max","homeobox protein 33","protein_coding"
"Glyma.06G029200","No alias","Glycine max","BEL1-like homeodomain 11","protein_coding"
"Glyma.06G033200","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.06G033600","No alias","Glycine max","Eukaryotic aspartyl protease family protein","protein_coding"
"Glyma.06G046600","No alias","Glycine max","no pollen germination related 1","protein_coding"
"Glyma.06G075300","No alias","Glycine max","SHK1 binding protein 1","protein_coding"
"Glyma.06G128900","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.06G159300","No alias","Glycine max","Protein of unknown function (DUF668)","protein_coding"
"Glyma.06G186400","No alias","Glycine max","ADP-glucose pyrophosphorylase family protein","protein_coding"
"Glyma.06G193200","No alias","Glycine max","NAP1-related protein 2","protein_coding"
"Glyma.07G021100","No alias","Glycine max","cyclin-dependent kinase B1;2","protein_coding"
"Glyma.07G026400","No alias","Glycine max","S15/NS1, RNA-binding protein","protein_coding"
"Glyma.07G043700","No alias","Glycine max","CCAAT-binding factor","protein_coding"
"Glyma.07G077400","No alias","Glycine max","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding"
"Glyma.07G124600","No alias","Glycine max","MATE efflux family protein","protein_coding"
"Glyma.07G126200","No alias","Glycine max","gamma-glutamyl transpeptidase 4","protein_coding"
"Glyma.07G166300","No alias","Glycine max","ARM repeat superfamily protein","protein_coding"
"Glyma.07G173900","No alias","Glycine max","Pentatricopeptide repeat (PPR-like) superfamily protein","protein_coding"
"Glyma.07G260400","No alias","Glycine max","Met-10+ like family protein / kelch repeat-containing protein","protein_coding"
"Glyma.08G015000","No alias","Glycine max","GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative","protein_coding"
"Glyma.08G028000","No alias","Glycine max","Homeodomain-like transcriptional regulator","protein_coding"
"Glyma.08G061500","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.08G098100","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.08G099200","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.08G140200","No alias","Glycine max","alanine:glyoxylate aminotransferase 2","protein_coding"
"Glyma.08G141200","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.08G145900","No alias","Glycine max","cinnamyl alcohol dehydrogenase 9","protein_coding"
"Glyma.08G173300","No alias","Glycine max","Ribosomal protein L1p/L10e family","protein_coding"
"Glyma.08G175200","No alias","Glycine max","glutathione S-transferase TAU 19","protein_coding"
"Glyma.08G196800","No alias","Glycine max","peptidase M20/M25/M40 family protein","protein_coding"
"Glyma.08G225000","No alias","Glycine max","Mitochondrial substrate carrier family protein","protein_coding"
"Glyma.08G253800","No alias","Glycine max","DNA/RNA polymerases superfamily protein","protein_coding"
"Glyma.08G316400","No alias","Glycine max","RING/U-box superfamily protein","protein_coding"
"Glyma.08G342300","No alias","Glycine max","kunitz trypsin inhibitor 1","protein_coding"
"Glyma.08G346500","No alias","Glycine max","Ribosomal protein S8e family protein","protein_coding"
"Glyma.09G035800","No alias","Glycine max","homolog of yeast FIP1 [V]","protein_coding"
"Glyma.09G071300","No alias","Glycine max","cyclin-dependent kinase B2;2","protein_coding"
"Glyma.09G104000","No alias","Glycine max","RNA binding;RNA binding","protein_coding"
"Glyma.09G145600","No alias","Glycine max","receptor like protein 7","protein_coding"
"Glyma.10G011800","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.10G058800","No alias","Glycine max","Major facilitator superfamily protein","protein_coding"
"Glyma.10G095200","No alias","Glycine max","nuclear RNA polymerase A1","protein_coding"
"Glyma.10G122200","No alias","Glycine max","GTP-binding family protein","protein_coding"
"Glyma.11G034700","No alias","Glycine max","Ribosomal protein L23/L15e family protein","protein_coding"
"Glyma.11G047200","No alias","Glycine max","N-acetyl-l-glutamate synthase 2","protein_coding"
"Glyma.11G049900","No alias","Glycine max","Ribonuclease III family protein","protein_coding"
"Glyma.11G050000","No alias","Glycine max","casein kinase alpha 1","protein_coding"
"Glyma.11G071900","No alias","Glycine max","SEC14-like 12","protein_coding"
"Glyma.11G077800","No alias","Glycine max","Pathogenesis-related thaumatin superfamily protein","protein_coding"
"Glyma.11G087500","No alias","Glycine max","Seven transmembrane MLO family protein","protein_coding"
"Glyma.11G091700","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.11G103500","No alias","Glycine max","cell elongation protein / DWARF1 / DIMINUTO (DIM)","protein_coding"
"Glyma.11G114300","No alias","Glycine max","NOP56-like pre RNA processing ribonucleoprotein","protein_coding"
"Glyma.11G125100","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.11G189500","No alias","Glycine max","histone deacetylase 2B","protein_coding"
"Glyma.11G219700","No alias","Glycine max","actin-related protein 5","protein_coding"
"Glyma.11G225200","No alias","Glycine max","ROP guanine nucleotide exchange factor 5","protein_coding"
"Glyma.11G244700","No alias","Glycine max","TCP-1/cpn60 chaperonin family protein","protein_coding"
"Glyma.11G254200","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.12G015900","No alias","Glycine max","prohibitin 6","protein_coding"
"Glyma.12G018500","No alias","Glycine max","exportin 1A","protein_coding"
"Glyma.12G027400","No alias","Glycine max","nucleolin like 2","protein_coding"
"Glyma.12G049700","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.12G057800","No alias","Glycine max","Nucleolar GTP-binding protein","protein_coding"
"Glyma.12G080600","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.12G085600","No alias","Glycine max","nucleobase-ascorbate transporter 12","protein_coding"
"Glyma.12G191500","No alias","Glycine max","cellulose synthase-like B4","protein_coding"
"Glyma.12G191700","No alias","Glycine max","cellulose synthase-like B3","protein_coding"
"Glyma.13G112900","No alias","Glycine max","ARM repeat superfamily protein","protein_coding"
"Glyma.13G150900","No alias","Glycine max","Ergosterol biosynthesis ERG4/ERG24 family","protein_coding"
"Glyma.13G163100","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.13G193200","No alias","Glycine max","Argonaute family protein","protein_coding"
"Glyma.13G210400","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.13G255400","No alias","Glycine max","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"Glyma.13G271400","No alias","Glycine max","cobalt ion binding","protein_coding"
"Glyma.13G275400","No alias","Glycine max","MATE efflux family protein","protein_coding"
"Glyma.13G278300","No alias","Glycine max","Plasma-membrane choline transporter family protein","protein_coding"
"Glyma.13G352600","No alias","Glycine max","basic helix-loop-helix (bHLH) DNA-binding superfamily protein","protein_coding"
"Glyma.14G033400","No alias","Glycine max","putative mitochondrial RNA helicase 2","protein_coding"
"Glyma.14G043400","No alias","Glycine max","TCP-1/cpn60 chaperonin family protein","protein_coding"
"Glyma.14G197500","No alias","Glycine max","ferritin 4","protein_coding"
"Glyma.14G212900","No alias","Glycine max","zinc ion binding","protein_coding"
"Glyma.15G028500","No alias","Glycine max","RNA-binding ASCH domain protein","protein_coding"
"Glyma.15G035900","No alias","Glycine max","pumilio 2","protein_coding"
"Glyma.15G037300","No alias","Glycine max","TRF-like 2","protein_coding"
"Glyma.15G056100","No alias","Glycine max","homologue of NAP57","protein_coding"
"Glyma.15G073700","No alias","Glycine max","RING membrane-anchor 1","protein_coding"
"Glyma.15G129400","No alias","Glycine max","Intron maturase, type II family protein","protein_coding"
"Glyma.15G140800","No alias","Glycine max","homolog of yeast FIP1 [V]","protein_coding"
"Glyma.15G165300","No alias","Glycine max","DNA binding;DNA-directed RNA polymerases","protein_coding"
"Glyma.15G177600","No alias","Glycine max","tubulin-tyrosine ligases;tubulin-tyrosine ligases","protein_coding"
"Glyma.15G193000","No alias","Glycine max","periodic tryptophan protein 2","protein_coding"
"Glyma.15G251500","No alias","Glycine max","glutathione S-transferase TAU 19","protein_coding"
"Glyma.16G012100","No alias","Glycine max","CCAAT-binding factor","protein_coding"
"Glyma.16G213700","No alias","Glycine max","Disease resistance protein (TIR-NBS-LRR class) family","protein_coding"
"Glyma.17G088200","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.17G099500","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.17G105700","No alias","Glycine max","Ribosomal protein S5/Elongation factor G/III/V family protein","protein_coding"
"Glyma.17G125600","No alias","Glycine max","proline transporter 1","protein_coding"
"Glyma.17G127700","No alias","Glycine max","Putative endonuclease or glycosyl hydrolase","protein_coding"
"Glyma.17G128500","No alias","Glycine max","RNA-metabolising metallo-beta-lactamase family protein","protein_coding"
"Glyma.17G148200","No alias","Glycine max","tRNA/rRNA methyltransferase (SpoU) family protein","protein_coding"
"Glyma.17G186500","No alias","Glycine max","Noc2p family","protein_coding"
"Glyma.17G250100","No alias","Glycine max","Sec14p-like phosphatidylinositol transfer family protein","protein_coding"
"Glyma.17G255300","No alias","Glycine max","Chaperone DnaJ-domain superfamily protein","protein_coding"
"Glyma.17G257600","No alias","Glycine max","eukaryotic initiation factor 3 gamma subunit family protein","protein_coding"
"Glyma.18G013300","No alias","Glycine max","sphere organelles protein-related","protein_coding"
"Glyma.18G148500","No alias","Glycine max","UDP-Glycosyltransferase superfamily protein","protein_coding"
"Glyma.18G187750","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.18G233500","No alias","Glycine max","U-box domain-containing protein kinase family protein","protein_coding"
"Glyma.18G269600","No alias","Glycine max","O-methyltransferase family protein","protein_coding"
"Glyma.19G006600","No alias","Glycine max","Tudor/PWWP/MBT superfamily protein","protein_coding"
"Glyma.19G052100","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.19G074500","No alias","Glycine max","Surfeit locus protein 6","protein_coding"
"Glyma.19G129900","No alias","Glycine max","PENTATRICOPEPTIDE REPEAT 596","protein_coding"
"Glyma.19G144400","No alias","Glycine max","uv-b-insensitive 4","protein_coding"
"Glyma.19G146300","No alias","Glycine max","Mitochondrial transcription termination factor family protein","protein_coding"
"Glyma.19G202600","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.19G217500","No alias","Glycine max","Carbohydrate-binding-like fold","protein_coding"
"Glyma.19G220100","No alias","Glycine max","Transducin family protein / WD-40 repeat family protein","protein_coding"
"Glyma.19G252200","No alias","Glycine max","Actin-like ATPase superfamily protein","protein_coding"
"Glyma.20G152600","No alias","Glycine max","subtilase 1.3","protein_coding"
"Glyma.20G195900","No alias","Glycine max","Integrase-type DNA-binding superfamily protein","protein_coding"
"Glyma.20G233800","No alias","Glycine max","rRNA processing protein-related","protein_coding"
"GRMZM2G001035","No alias","Zea mays","Vacuolar iron transporter (VIT) family protein","protein_coding"
"GRMZM2G001500","No alias","Zea mays","chloroplast heat shock protein 70-2","protein_coding"
"GRMZM2G005308","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM2G012999","No alias","Zea mays","Mitochondrial transcription termination factor family protein","protein_coding"
"GRMZM2G017643","No alias","Zea mays","Cupredoxin superfamily protein","protein_coding"
"GRMZM2G018873","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM2G023655","No alias","Zea mays","Pathogenesis-related thaumatin superfamily protein","protein_coding"
"GRMZM2G029496","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM2G042084","No alias","Zea mays","Rho GTPase activation protein (RhoGAP) with PH domain","protein_coding"
"GRMZM2G044055","No alias","Zea mays","formin homology 1","protein_coding"
"GRMZM2G047910","No alias","Zea mays","UDP-Glycosyltransferase superfamily protein","protein_coding"
"GRMZM2G050765","No alias","Zea mays","Pseudouridine synthase family protein","protein_coding"
"GRMZM2G063258","No alias","Zea mays","NAD-dependent glycerol-3-phosphate dehydrogenase family protein","protein_coding"
"GRMZM2G080898","No alias","Zea mays","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"GRMZM2G091245","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM2G100462","No alias","Zea mays","Ribosomal protein S11 family protein","protein_coding"
"GRMZM2G110731","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM2G110858","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM2G111760","No alias","Zea mays","Duplicated homeodomain-like superfamily protein","protein_coding"
"GRMZM2G117648","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM2G123922","No alias","Zea mays","CLPC homologue 1","protein_coding"
"GRMZM2G124557","No alias","Zea mays","RAB geranylgeranyl transferase beta subunit 2","protein_coding"
"GRMZM2G124815","No alias","Zea mays","HXXXD-type acyl-transferase family protein","protein_coding"
"GRMZM2G127844","No alias","Zea mays","Peptidyl-tRNA hydrolase II (PTH2) family protein","protein_coding"
"GRMZM2G145308","No alias","Zea mays","40s ribosomal protein SA B","protein_coding"
"GRMZM2G145482","No alias","Zea mays","RING/U-box superfamily protein","protein_coding"
"GRMZM2G146416","No alias","Zea mays","myosin heavy chain-related","protein_coding"
"GRMZM2G158179","No alias","Zea mays","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"GRMZM2G159660","No alias","Zea mays","Calcineurin-like metallo-phosphoesterase superfamily protein","protein_coding"
"GRMZM2G164674","No alias","Zea mays","glyoxal oxidase-related protein","protein_coding"
"GRMZM2G168176","No alias","Zea mays","Ribosomal RNA processing Brix domain protein","protein_coding"
"GRMZM2G333641","No alias","Zea mays","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"GRMZM2G336875","No alias","Zea mays","Ribosomal protein S8e family protein","protein_coding"
"GRMZM2G452026","No alias","Zea mays","eukaryotic release factor 1-3","protein_coding"
"GRMZM2G454334","No alias","Zea mays","NB-ARC domain-containing disease resistance protein","protein_coding"
"GRMZM2G539665","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM5G800244","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM5G801457","No alias","Zea mays","Translation elongation factor EF1A/initiation factor IF2gamma family protein","protein_coding"
"GRMZM5G813996","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM5G820904","No alias","Zea mays","translocon at the outer envelope membrane of chloroplasts 75-III","protein_coding"
"GRMZM5G830868","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM5G864778","No alias","Zea mays","mitochondrial HSO70 2","protein_coding"
"GRMZM5G877815","No alias","Zea mays","Ribosomal protein S27a / Ubiquitin family protein","protein_coding"
"HORVU0Hr1G022520.12","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G025600.3","No alias","Hordeum vulgare","E3 ubiquitin ligase *(DRR1)","protein_coding"
"HORVU1Hr1G030480.3","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G054000.1","No alias","Hordeum vulgare","anion transporter *(NRT1/PTR)","protein_coding"
"HORVU1Hr1G054020.3","No alias","Hordeum vulgare","anion transporter *(NRT1/PTR)","protein_coding"
"HORVU1Hr1G070430.8","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G089280.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G031690.1","No alias","Hordeum vulgare","nucleocytoplasmic export karyopherin *(XPO3/XPOT) & tRNA export karyopherin *(XPOT)","protein_coding"
"HORVU2Hr1G065330.5","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G079550.1","No alias","Hordeum vulgare","histone *(H3)","protein_coding"
"HORVU2Hr1G081460.2","No alias","Hordeum vulgare","indole-3-glycerol phosphate synthase","protein_coding"
"HORVU3Hr1G021080.2","No alias","Hordeum vulgare","choline kinase *(CEK) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"HORVU3Hr1G029770.4","No alias","Hordeum vulgare","glycerol-3-phosphate acyltransferase *(GPAT)","protein_coding"
"HORVU3Hr1G039980.8","No alias","Hordeum vulgare","component *(CSN2) of COP9 signalosome complex","protein_coding"
"HORVU3Hr1G069970.5","No alias","Hordeum vulgare","ER-tubule curvature-inducing protein *(Reticulon)","protein_coding"
"HORVU3Hr1G073630.8","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G073690.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G077530.9","No alias","Hordeum vulgare","transport protein *(TSUP)","protein_coding"
"HORVU3Hr1G085690.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G089520.5","No alias","Hordeum vulgare","scopolin-hydrolizing beta-glycosyl hydrolase *(BGLU42) & EC_3.2 glycosylase","protein_coding"
"HORVU3Hr1G090970.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G115540.14","No alias","Hordeum vulgare","telomeric dsDNA-binding protein","protein_coding"
"HORVU4Hr1G000940.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G073060.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G075560.1","No alias","Hordeum vulgare","catalytic component *(ALG13) of ALG13-ALG14 UDP-N-acetylglucosamine transferase complex & EC_2.4 glycosyltransferase","protein_coding"
"HORVU4Hr1G081100.1","No alias","Hordeum vulgare","class phi glutathione S-transferase","protein_coding"
"HORVU5Hr1G001670.1","No alias","Hordeum vulgare","calcium-permeable channel *(OSCA)","protein_coding"
"HORVU5Hr1G018400.1","No alias","Hordeum vulgare","solute transporter *(NAT)","protein_coding"
"HORVU5Hr1G022100.2","No alias","Hordeum vulgare","subunit alpha of ATP-dependent citrate lyase complex","protein_coding"
"HORVU5Hr1G027910.15","No alias","Hordeum vulgare","chaperone *(Hsp90)","protein_coding"
"HORVU5Hr1G040460.7","No alias","Hordeum vulgare","regulatory component *(DCP1) of mRNA decapping complex","protein_coding"
"HORVU5Hr1G044440.4","No alias","Hordeum vulgare","SSU processome assembly factor *(MPP10)","protein_coding"
"HORVU5Hr1G045040.1","No alias","Hordeum vulgare","electron shuttle component *(Cyt-b5) of CER1-CER3 alkane-forming complex & cytochrome electron shuttle hemoprotein *(Cyt-b5)","protein_coding"
"HORVU5Hr1G078180.5","No alias","Hordeum vulgare","RLCK-VIII receptor-like protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"HORVU5Hr1G081900.1","No alias","Hordeum vulgare","MAP3K-WNK protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"HORVU5Hr1G094570.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G098000.2","No alias","Hordeum vulgare","protein involved in cytochrome b6/f complex assembly *(HCF164)","protein_coding"
"HORVU5Hr1G114720.2","No alias","Hordeum vulgare","EC_4.3 carbon-nitrogen lyase","protein_coding"
"HORVU5Hr1G114800.2","No alias","Hordeum vulgare","EC_4.3 carbon-nitrogen lyase","protein_coding"
"HORVU6Hr1G002580.20","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G012570.2","No alias","Hordeum vulgare","peptidyl-prolyl cis-trans isomerase *(ROC1/2/3) & EC_5.2 cis-trans-isomerase","protein_coding"
"HORVU6Hr1G028730.1","No alias","Hordeum vulgare","component *(UFD1) of ER-associated protein degradation (ERAD) machinery","protein_coding"
"HORVU6Hr1G036660.13","No alias","Hordeum vulgare","subunit beta2 of coat protein complex","protein_coding"
"HORVU6Hr1G048390.2","No alias","Hordeum vulgare","regulatory factor *(RBP45/47) of mRNA stress granule formation","protein_coding"
"HORVU6Hr1G070270.5","No alias","Hordeum vulgare","EC_2.7 transferase transferring phosphorus-containing group & pyrophosphate-dependent phosphofructokinase","protein_coding"
"HORVU6Hr1G072040.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G073730.1","No alias","Hordeum vulgare","Caleosin-type peroxygenase","protein_coding"
"HORVU7Hr1G010740.1","No alias","Hordeum vulgare","WAK/WAKL protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"HORVU7Hr1G037570.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G042490.1","No alias","Hordeum vulgare","A1-class (Pepsin) protease & aspartyl protease (APCB) of BAG6-dependent plant immunity","protein_coding"
"HORVU7Hr1G062510.5","No alias","Hordeum vulgare","phosphometabolite transporter *(TPT/PPT/GPT/XPT)","protein_coding"
"HORVU7Hr1G110200.15","No alias","Hordeum vulgare","EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Kfl00003_0055","kfl00003_0055_v1.1","Klebsormidium nitens","(at1g06560 : 201.0) NOL1/NOP2/sun family protein; FUNCTIONS IN: methyltransferase activity, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26600.1); Has 13569 Blast hits to 8411 proteins in 2331 species: Archae - 604; Bacteria - 9970; Metazoa - 826; Fungi - 418; Plants - 360; Viruses - 0; Other Eukaryotes - 1391 (source: NCBI BLink). & (reliability: 402.0) &  (original description: no original description)","protein_coding"
"Kfl00013_0470","kfl00013_0470_v1.1","Klebsormidium nitens","(at1g53720 : 540.0) Encodes a cyclophilin, member of a family modular proteins consisting of a peptidyl-prolyl cisñ  trans isomerase (PPIase) domain, followed by an RNA recognition motif (RRM), and a C-terminal domain enriched in charged  amino acids. Interacts with with SCL33/SR33 and with a majority of Arabidopsis SR proteins and the largest subunit of RNA polymerase II. Localizes to the nucleus, but it does not significantly colocalize with SR  proteins in nuclear speckles.; cyclophilin 59 (CYP59); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity, RNA binding, nucleic acid binding; INVOLVED IN: protein folding; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (TAIR:AT1G53780.2); Has 61647 Blast hits to 39757 proteins in 2942 species: Archae - 163; Bacteria - 9741; Metazoa - 25019; Fungi - 7217; Plants - 5688; Viruses - 226; Other Eukaryotes - 13593 (source: NCBI BLink). & (reliability: 1080.0) &  (original description: no original description)","protein_coding"
"Kfl00014_0670","kfl00014_0670_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00019_0650","kfl00019_0650_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00020_0230","kfl00020_0230_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00023_0190","kfl00023_0190_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00030_0450","kfl00030_0450_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00034_0350","kfl00034_0350_v1.1","Klebsormidium nitens","(at3g55340 : 157.0) Plant-specific protein. Interacts with phragmoplastin, Rop1 and Rop2. Involved in cell plate formation.; phragmoplastin interacting protein 1 (PHIP1); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G35410.1); Has 17490 Blast hits to 13137 proteins in 598 species: Archae - 10; Bacteria - 621; Metazoa - 8175; Fungi - 2466; Plants - 2451; Viruses - 16; Other Eukaryotes - 3751 (source: NCBI BLink). & (reliability: 314.0) &  (original description: no original description)","protein_coding"
"Kfl00037_0050","kfl00037_0050_v1.1","Klebsormidium nitens","(at1g49520 : 112.0) SWIB complex BAF60b domain-containing protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835), DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: SWIB complex BAF60b domain-containing protein (TAIR:AT3G19080.1); Has 3197 Blast hits to 1975 proteins in 305 species: Archae - 0; Bacteria - 439; Metazoa - 696; Fungi - 468; Plants - 732; Viruses - 19; Other Eukaryotes - 843 (source: NCBI BLink). & (reliability: 224.0) &  (original description: no original description)","protein_coding"
"Kfl00038_0100","kfl00038_0100_v1.1","Klebsormidium nitens","(at5g47680 : 205.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA (guanine-N1-)-methyltransferase (InterPro:IPR016009), tRNA (guanine-N(1)-)-methyltransferase, metazoa (InterPro:IPR016653), tRNA (guanine-N1-)-methyltransferase, eukaryotic (InterPro:IPR007356); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 410.0) &  (original description: no original description)","protein_coding"
"Kfl00048_0220","kfl00048_0220_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00068_0350","kfl00068_0350_v1.1","Klebsormidium nitens","(at2g45770 : 365.0) chloroplast SRP receptor homolog, alpha subunit CPFTSY. Required for LHCP  integration into isolated thylakoids.; CPFTSY; FUNCTIONS IN: GTP binding; INVOLVED IN: protein import into chloroplast thylakoid membrane, protein targeting, thylakoid membrane organization, photosynthetic electron transport in photosystem II; LOCATED IN: chloroplast, signal recognition particle, endoplasmic reticulum targeting, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897), Cell division transporter substrate-binding protein FtsY (InterPro:IPR004390); BEST Arabidopsis thaliana protein match is: chloroplast signal recognition particle 54 kDa subunit (TAIR:AT5G03940.1). & (p49970|sr543_horvu : 94.7) Signal recognition particle 54 kDa protein 3 (SRP54) - Hordeum vulgare (Barley) & (reliability: 730.0) &  (original description: no original description)","protein_coding"
"Kfl00070_0160","kfl00070_0160_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00075_0352","kfl00075_0352_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00085_0420","kfl00085_0420_v1.1","Klebsormidium nitens","(at2g37990 : 211.0) ribosome biogenesis regulatory protein (RRS1) family protein; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal biogenesis regulatory protein (InterPro:IPR007023); Has 425 Blast hits to 423 proteins in 207 species: Archae - 1; Bacteria - 2; Metazoa - 151; Fungi - 137; Plants - 58; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). & (reliability: 422.0) &  (original description: no original description)","protein_coding"
"Kfl00088_0100","kfl00088_0100_v1.1","Klebsormidium nitens","(at4g09730 : 387.0) Encodes RH39, a DEAD-box protein involved in the introduction of the hidden break into the 23S rRNA in the chloroplasts. Recombinant RH39 binds to the 23S rRNA in a segment adjacent to the stem-loop creating the hidden break target loop in a sequence-dependent manner. Has ATP-hydrolyzing activity at a Kcat of 5.3 /min in the presence of rRNA sequence. Mutants have drastically reduced level of level of ribulose 1,5-bisphosphate carboxylase/oxygenase.; RH39 (RH39); FUNCTIONS IN: LSU rRNA binding, ATPase activity, ATP-dependent helicase activity; INVOLVED IN: chloroplast ribulose bisphosphate carboxylase complex biogenesis, chloroplast rRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT3G06980.1); Has 40425 Blast hits to 39698 proteins in 3032 species: Archae - 675; Bacteria - 19989; Metazoa - 5933; Fungi - 4498; Plants - 2407; Viruses - 9; Other Eukaryotes - 6914 (source: NCBI BLink). & (p46942|db10_nicsy : 152.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 774.0) &  (original description: no original description)","protein_coding"
"Kfl00107_0190","kfl00107_0190_v1.1","Klebsormidium nitens","(at5g64670 : 256.0) Ribosomal protein L18e/L15 superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, large ribosomal subunit; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131), Ribosomal protein L15, bacterial-type (InterPro:IPR005749); BEST Arabidopsis thaliana protein match is: ribosomal protein L15 (TAIR:AT3G25920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 512.0) &  (original description: no original description)","protein_coding"
"Kfl00115_0050","kfl00115_0050_v1.1","Klebsormidium nitens","(at4g02220 : 173.0) zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Programmed cell death protein 2, C-terminal (InterPro:IPR007320), Zinc finger, MYND-type (InterPro:IPR002893); BEST Arabidopsis thaliana protein match is: programmed cell death 2 C-terminal domain-containing protein (TAIR:AT5G64830.1); Has 934 Blast hits to 894 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 394; Fungi - 162; Plants - 228; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). & (reliability: 346.0) &  (original description: no original description)","protein_coding"
"Kfl00115_0200","kfl00115_0200_v1.1","Klebsormidium nitens","(at1g72320 : 276.0) Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.; pumilio 23 (PUM23); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 552.0) &  (original description: no original description)","protein_coding"
"Kfl00118_0250","kfl00118_0250_v1.1","Klebsormidium nitens","(at2g21940 : 163.0) shikimate kinase 1 (SK1); FUNCTIONS IN: shikimate kinase activity, ATP binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase 2 (TAIR:AT4G39540.2); Has 7831 Blast hits to 7831 proteins in 2412 species: Archae - 26; Bacteria - 5482; Metazoa - 44; Fungi - 134; Plants - 162; Viruses - 0; Other Eukaryotes - 1983 (source: NCBI BLink). & (reliability: 326.0) &  (original description: no original description)","protein_coding"
"Kfl00118_0360","kfl00118_0360_v1.1","Klebsormidium nitens","(at5g66540 : 231.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 462.0) &  (original description: no original description)","protein_coding"
"Kfl00133_0190","kfl00133_0190_v1.1","Klebsormidium nitens","(at1g09770 : 814.0) Member of MYB3R- and R2R3- type MYB- encoding genes.  Essential for plant innate immunity.  Interacts with MOS4 and PRL1.; cell division cycle 5 (CDC5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: defense response signaling pathway, resistance gene-independent, defense response signaling pathway, resistance gene-dependent, defense response to bacterium, defense response to fungus, regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3351 (InterPro:IPR021786), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 3r-4 (TAIR:AT5G11510.1); Has 13137 Blast hits to 10813 proteins in 768 species: Archae - 14; Bacteria - 356; Metazoa - 3570; Fungi - 914; Plants - 4936; Viruses - 8; Other Eukaryotes - 3339 (source: NCBI BLink). & (reliability: 1628.0) &  (original description: no original description)","protein_coding"
"Kfl00134_0160","kfl00134_0160_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00138_0170","kfl00138_0170_v1.1","Klebsormidium nitens","(at1g32750 : 489.0) This gene is predicted to encode a histone acetyltransferase. Five lines with RNAi constructs directed against HAF1 grow normally and can produce root calli, but have defects in agrobacterium-mediated transformation.; HAF01; FUNCTIONS IN: histone acetyltransferase activity, DNA binding; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TAFII-230 TBP-binding (InterPro:IPR009067), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: histone acetyltransferase of the TAFII250 family 2 (TAIR:AT3G19040.1); Has 22854 Blast hits to 14376 proteins in 1001 species: Archae - 24; Bacteria - 596; Metazoa - 11292; Fungi - 2677; Plants - 2799; Viruses - 159; Other Eukaryotes - 5307 (source: NCBI BLink). & (reliability: 978.0) &  (original description: no original description)","protein_coding"
"Kfl00139_0060","kfl00139_0060_v1.1","Klebsormidium nitens",""(at5g23190 : 220.0) cytochrome P450 CYP86B1, nuclear gene for chloroplast product.  CYP86B1 is a very long chain fatty acid hydroxylase specifically involved in polyester monomer biosynthesis during the course of plant development.; ""cytochrome P450, family 86, subfamily B, polypeptide 1"" (CYP86B1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: very long-chain fatty acid biosynthetic process, suberin biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: Cytochrome P450 superfamily protein (TAIR:AT5G08250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o48921|c97b2_soybn : 92.0) Cytochrome P450 97B2 (EC 1.14.-.-) - Glycine max (Soybean) & (reliability: 440.0) &  (original description: no original description)"","protein_coding"
"Kfl00139_0220","kfl00139_0220_v1.1","Klebsormidium nitens","(at1g16720 : 565.0) Encodes HCF173, a protein with weak similarities to the superfamily of the short-chain dehydrogenases/reductases. HCF173 is involved in the initiation of translation of the psbA mRNA.  Mutants shows a high chlorophyll fluorescence phenotype (hcf) and are severely affected in the accumulation of PSII subunits.  The protein HCF173 is localized in the chloroplast, where it is mainly associated with the membrane system and is part of a higher molecular weight complex with psbA mRNA as a component of this complex.; high chlorophyll fluorescence phenotype 173 (HCF173); FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: photosystem II assembly, translational initiation; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (InterPro:IPR013857), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G18810.2); Has 1950 Blast hits to 1792 proteins in 453 species: Archae - 27; Bacteria - 1263; Metazoa - 9; Fungi - 6; Plants - 464; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink). & (reliability: 1130.0) &  (original description: no original description)","protein_coding"
"Kfl00139_0240","kfl00139_0240_v1.1","Klebsormidium nitens","(at3g02860 : 94.0) zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880); Has 2461 Blast hits to 1944 proteins in 239 species: Archae - 0; Bacteria - 112; Metazoa - 958; Fungi - 273; Plants - 97; Viruses - 6; Other Eukaryotes - 1015 (source: NCBI BLink). & (reliability: 188.0) &  (original description: no original description)","protein_coding"
"Kfl00141_0040","kfl00141_0040_v1.1","Klebsormidium nitens","(at1g72040 : 366.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: phosphotransferase activity, alcohol group as acceptor, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Deoxynucleoside kinase (InterPro:IPR002624); Has 2859 Blast hits to 2855 proteins in 704 species: Archae - 0; Bacteria - 1629; Metazoa - 493; Fungi - 0; Plants - 69; Viruses - 71; Other Eukaryotes - 597 (source: NCBI BLink). & (reliability: 732.0) &  (original description: no original description)","protein_coding"
"Kfl00159_0050","kfl00159_0050_v1.1","Klebsormidium nitens","(at4g12620 : 434.0) Origin Recognition Complex subunit 1b. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with ORC2 and ORC5. Highly expressed in proliferating cells. Expression levels are independent of light regime.; origin of replication complex 1B (ORC1B); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Origin recognition complex, subunit 1 (InterPro:IPR020793), ATPase, AAA+ type, core (InterPro:IPR003593), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: origin recognition complex 1 (TAIR:AT4G14700.1); Has 5914 Blast hits to 5512 proteins in 383 species: Archae - 477; Bacteria - 4; Metazoa - 3209; Fungi - 806; Plants - 927; Viruses - 0; Other Eukaryotes - 491 (source: NCBI BLink). & (reliability: 866.0) &  (original description: no original description)","protein_coding"
"Kfl00161_0110","kfl00161_0110_v1.1","Klebsormidium nitens","(at3g26680 : 236.0) Involved in a SNM-dependent recombinational  repair process of oxidatively induced DNA damage.; SENSITIVE TO NITROGEN MUSTARD 1 (SNM1); FUNCTIONS IN: hydrolase activity; INVOLVED IN: DNA repair, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: sterile alpha motif (SAM) domain-containing protein (TAIR:AT2G45700.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 472.0) &  (original description: no original description)","protein_coding"
"Kfl00164_0020","kfl00164_0020_v1.1","Klebsormidium nitens","(at4g21660 : 452.0) proline-rich spliceosome-associated (PSP) family protein; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: PSP, proline-rich (InterPro:IPR006568), Protein of unknown function DUF382 (InterPro:IPR007180); BEST Arabidopsis thaliana protein match is: pliceosome associated protein-related (TAIR:AT1G11520.1). & (reliability: 904.0) &  (original description: no original description)","protein_coding"
"Kfl00177_0090","kfl00177_0090_v1.1","Klebsormidium nitens"," (original description: no original description)","protein_coding"
"Kfl00220_0160","kfl00220_0160_v1.1","Klebsormidium nitens","(at4g37200 : 184.0) Encodes thioredoxin-like protein with disulfide reductase activity that is involved in the biogenesis of the plastid cytochrome b6f complex.  Protein is located in the thylakoid membrane with the C-terminal hydrophilic portion, containing the thioredoxin like domain, extending into the thylakoid lumen.; HIGH CHLOROPHYLL FLUORESCENCE 164 (HCF164); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cytochrome b6f complex assembly; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin X (TAIR:AT1G50320.1); Has 12708 Blast hits to 12383 proteins in 2440 species: Archae - 136; Bacteria - 7708; Metazoa - 1002; Fungi - 428; Plants - 950; Viruses - 3; Other Eukaryotes - 2481 (source: NCBI BLink). & (reliability: 368.0) &  (original description: no original description)","protein_coding"
"Kfl00264_0020","kfl00264_0020_v1.1","Klebsormidium nitens","(at5g25060 : 306.0) RNA recognition motif (RRM)-containing protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II, large subunit, CTD (InterPro:IPR006569), mRNA splicing factor, Cwf21 (InterPro:IPR013170), ENTH/VHS (InterPro:IPR008942), SWAP/Surp (InterPro:IPR000061), DNA-binding SAP (InterPro:IPR003034), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G10800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 612.0) &  (original description: no original description)","protein_coding"
"Kfl00271_0200","kfl00271_0200_v1.1","Klebsormidium nitens","(at5g08400 : 149.0) Protein of unknown function (DUF3531); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3531 (InterPro:IPR021920); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3531) (TAIR:AT4G29400.1); Has 314 Blast hits to 314 proteins in 83 species: Archae - 0; Bacteria - 120; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink). & (reliability: 298.0) &  (original description: no original description)","protein_coding"
"Kfl00282_0080","kfl00282_0080_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00286_0140","kfl00286_0140_v1.1","Klebsormidium nitens","(at3g02220 : 121.0) unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2039 (InterPro:IPR019351); Has 215 Blast hits to 215 proteins in 94 species: Archae - 2; Bacteria - 2; Metazoa - 125; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). & (reliability: 242.0) &  (original description: no original description)","protein_coding"
"Kfl00292_0120","kfl00292_0120_v1.1","Klebsormidium nitens","(at2g36740 : 155.0) SWC2; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272), YL1 nuclear (InterPro:IPR008895); Has 4932 Blast hits to 3253 proteins in 360 species: Archae - 2; Bacteria - 230; Metazoa - 1594; Fungi - 576; Plants - 159; Viruses - 97; Other Eukaryotes - 2274 (source: NCBI BLink). & (reliability: 310.0) &  (original description: no original description)","protein_coding"
"Kfl00294_0040","kfl00294_0040_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00332_0120","kfl00332_0120_v1.1","Klebsormidium nitens","(at5g66080 : 266.0) Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C,  manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 532.0) &  (original description: no original description)","protein_coding"
"Kfl00335_0040","kfl00335_0040_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00338_g2","kfl00338_g2_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00412_0110","kfl00412_0110_v1.1","Klebsormidium nitens","(at1g55870 : 145.0) Encodes a poly(A)-specific ribonuclease, AtPARN. Expression of AtPARN is upregulated by ABA or stress treatment. Mutant is hypersensitivity to salicylic acid as well as ABA.; ABA-HYPERSENSITIVE GERMINATION 2 (AHG2); FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: response to abscisic acid stimulus, RNA modification, response to stress, response to salicylic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G25430.1); Has 352 Blast hits to 351 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 63; Plants - 63; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink). & (reliability: 290.0) &  (original description: no original description)","protein_coding"
"Kfl00430_0040","kfl00430_0040_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00470_0040","kfl00470_0040_v1.1","Klebsormidium nitens","(at4g01050 : 94.0) hydroxyproline-rich glycoprotein family protein, contains a rhodanese homology domain. Required  for anchoring the FNR flavoenzyme to the thylakoid membranes  and sustaining high efficiency photosynthetic linear electron flow.; thylakoid rhodanese-like (TROL); FUNCTIONS IN: protein binding; INVOLVED IN: defense response to bacterium, photosynthetic electron transport in photosystem II; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT3G25480.1); Has 6015 Blast hits to 4196 proteins in 851 species: Archae - 23; Bacteria - 2268; Metazoa - 876; Fungi - 517; Plants - 614; Viruses - 167; Other Eukaryotes - 1550 (source: NCBI BLink). & (reliability: 188.0) &  (original description: no original description)","protein_coding"
"Kfl00485_0070","kfl00485_0070_v1.1","Klebsormidium nitens","(at1g22970 : 99.8) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G71150.1); Has 134 Blast hits to 132 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 66; Fungi - 10; Plants - 48; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). & (reliability: 199.6) &  (original description: no original description)","protein_coding"
"Kfl00546_0020","kfl00546_0020_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00571_0020","kfl00571_0020_v1.1","Klebsormidium nitens","(at1g54650 : 147.0) Methyltransferase family protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase, METTL2, predicted (InterPro:IPR017280), Methyltransferase type 12 (InterPro:IPR013217); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT2G26200.1). & (reliability: 294.0) &  (original description: no original description)","protein_coding"
"Kfl00575_0010","kfl00575_0010_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00662_0060","kfl00662_0060_v1.1","Klebsormidium nitens","(at1g16280 : 431.0) RNA helicase 36 (RH36); FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: post-embryonic development, embryo sac development, rRNA processing; LOCATED IN: nucleus; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 43946 Blast hits to 42938 proteins in 3095 species: Archae - 969; Bacteria - 21832; Metazoa - 6240; Fungi - 4948; Plants - 2606; Viruses - 36; Other Eukaryotes - 7315 (source: NCBI BLink). & (q40468|if415_tobac : 181.0) Eukaryotic initiation factor 4A-15 (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A-15) (eIF-4A-15) - Nicotiana tabacum (Common tobacco) & (reliability: 862.0) &  (original description: no original description)","protein_coding"
"Kfl00663_0070","kfl00663_0070_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00672_0060","kfl00672_0060_v1.1","Klebsormidium nitens","(at1g09760 : 232.0) U2 small nuclear ribonucleoprotein A (U2A'); INVOLVED IN: nuclear mRNA splicing, via spliceosome, response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U2A'/phosphoprotein 32 family A, C-terminal (InterPro:IPR003603); Has 8109 Blast hits to 6297 proteins in 450 species: Archae - 0; Bacteria - 3635; Metazoa - 3194; Fungi - 303; Plants - 219; Viruses - 2; Other Eukaryotes - 756 (source: NCBI BLink). & (reliability: 464.0) &  (original description: no original description)","protein_coding"
"Kfl00849_0060","kfl00849_0060_v1.1","Klebsormidium nitens","(at2g25830 : 186.0) YebC-related; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF28 (InterPro:IPR002876), Integrase, N-terminal zinc-binding domain-like (InterPro:IPR017856); Has 8692 Blast hits to 8692 proteins in 2830 species: Archae - 0; Bacteria - 6166; Metazoa - 76; Fungi - 120; Plants - 47; Viruses - 0; Other Eukaryotes - 2283 (source: NCBI BLink). & (reliability: 372.0) &  (original description: no original description)","protein_coding"
"Kfl01142_0020","kfl01142_0020_v1.1","Klebsormidium nitens","(at1g22170 : 197.0) Phosphoglycerate mutase family protein; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases, catalytic activity; INVOLVED IN: glycolysis, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase, active site (InterPro:IPR001345), Phosphoglycerate mutase 1 (InterPro:IPR005952); BEST Arabidopsis thaliana protein match is: phosphoglycerate/bisphosphoglycerate mutase (TAIR:AT1G78050.1); Has 12525 Blast hits to 12398 proteins in 2288 species: Archae - 62; Bacteria - 8805; Metazoa - 605; Fungi - 308; Plants - 169; Viruses - 0; Other Eukaryotes - 2576 (source: NCBI BLink). & (reliability: 380.0) &  (original description: no original description)","protein_coding"
"Kfl01338_0020","kfl01338_0020_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"LOC_Os01g02830","No alias","Oryza sativa","receptor-like kinase ARK1AS, putative, expressed","protein_coding"
"LOC_Os01g04870","No alias","Oryza sativa","WD domain, G-beta repeat domain containing protein, expressed","protein_coding"
"LOC_Os01g11460","No alias","Oryza sativa","zinc finger, C3HC4 type domain containing protein, expressed","protein_coding"
"LOC_Os01g16910","No alias","Oryza sativa","outer mitochondrial membrane porin, putative, expressed","protein_coding"
"LOC_Os01g42820","No alias","Oryza sativa","RNA recognition motif containing protein, putative, expressed","protein_coding"
"LOC_Os01g42990","No alias","Oryza sativa","PPR repeat domain containing protein, putative, expressed","protein_coding"
"LOC_Os01g43040","No alias","Oryza sativa","amino acid transporter, putative, expressed","protein_coding"
"LOC_Os01g45530","No alias","Oryza sativa","single-stranded DNA-binding protein, putative, expressed","protein_coding"
"LOC_Os01g47256","No alias","Oryza sativa","exosome complex exonuclease RRP40, putative, expressed","protein_coding"
"LOC_Os01g52490","No alias","Oryza sativa","40S ribosomal protein S24, putative, expressed","protein_coding"
"LOC_Os01g55610","No alias","Oryza sativa","peptide transporter PTR2, putative, expressed","protein_coding"
"LOC_Os01g57630","No alias","Oryza sativa","pentatricopeptide containing protein, putative, expressed","protein_coding"
"LOC_Os01g60010","No alias","Oryza sativa","PPR repeat domain containing protein, putative, expressed","protein_coding"
"LOC_Os01g60260","No alias","Oryza sativa","KH domain containing protein, putative, expressed","protein_coding"
"LOC_Os01g65130","No alias","Oryza sativa","peptide transporter, putative, expressed","protein_coding"
"LOC_Os01g65560","No alias","Oryza sativa","snRK1-interacting protein 1, putative, expressed","protein_coding"
"LOC_Os01g72020","No alias","Oryza sativa","BTBA3 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed","protein_coding"
"LOC_Os02g20270","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os02g41510","No alias","Oryza sativa","MYB family transcription factor, putative, expressed","protein_coding"
"LOC_Os02g46150","No alias","Oryza sativa","GAMM1 protein-like, putative, expressed","protein_coding"
"LOC_Os02g49360","No alias","Oryza sativa","RNA methyltransferase domain-containing protein 2, putative, expressed","protein_coding"
"LOC_Os03g05570","No alias","Oryza sativa","RING-H2 finger protein ATL3F, putative, expressed","protein_coding"
"LOC_Os03g10520","No alias","Oryza sativa","radical SAM enzyme, putative, expressed","protein_coding"
"LOC_Os03g10930","No alias","Oryza sativa","ribosomal protein L51, putative, expressed","protein_coding"
"LOC_Os03g19930","No alias","Oryza sativa","adenylosuccinate lyase, putative, expressed","protein_coding"
"LOC_Os03g21530","No alias","Oryza sativa","AARP2CN domain containing protein, expressed","protein_coding"
"LOC_Os03g25920","No alias","Oryza sativa","amino acid permease family protein, putative, expressed","protein_coding"
"LOC_Os03g42480","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os03g46600","No alias","Oryza sativa","acidic leucine-rich nuclear phosphoprotein 32-related protein 2, putative, expressed","protein_coding"
"LOC_Os03g55180","No alias","Oryza sativa","DUF1336 domain containing protein, expressed","protein_coding"
"LOC_Os04g34270","No alias","Oryza sativa","serine/threonine-protein kinase receptor precursor, putative, expressed","protein_coding"
"LOC_Os04g36890","No alias","Oryza sativa","peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed","protein_coding"
"LOC_Os04g47380","No alias","Oryza sativa","coiled-coil domain-containing protein 139, putative, expressed","protein_coding"
"LOC_Os04g55610","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os05g06290","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os05g15520","No alias","Oryza sativa","DNA-binding protein-related, putative, expressed","protein_coding"
"LOC_Os05g18750","No alias","Oryza sativa","ribosomal protein L25, putative, expressed","protein_coding"
"LOC_Os05g19370","No alias","Oryza sativa","60S ribosomal protein L15, putative, expressed","protein_coding"
"LOC_Os05g32610","No alias","Oryza sativa","required to maintain repression 1, putative, expressed","protein_coding"
"LOC_Os05g35580","No alias","Oryza sativa","amidophosphoribosyltransferase, chloroplast precursor, putative, expressed","protein_coding"
"LOC_Os05g45860","No alias","Oryza sativa","glucan endo-1,3-beta-glucosidase precursor, putative, expressed","protein_coding"
"LOC_Os06g02200","No alias","Oryza sativa","pentatricopeptide, putative, expressed","protein_coding"
"LOC_Os06g02490","No alias","Oryza sativa","acyl CoA binding protein, putative, expressed","protein_coding"
"LOC_Os06g19640","No alias","Oryza sativa","39S ribosomal protein L46, mitochondrial precursor, putative, expressed","protein_coding"
"LOC_Os06g43690","No alias","Oryza sativa","WD repeat-containing protein, putative, expressed","protein_coding"
"LOC_Os07g07220","No alias","Oryza sativa","LSM domain containing protein, expressed","protein_coding"
"LOC_Os07g09800","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os07g49230","No alias","Oryza sativa","ubiquitin-activating enzyme, putative, expressed","protein_coding"
"LOC_Os08g05490","No alias","Oryza sativa","tRNA synthetase, putative, expressed","protein_coding"
"LOC_Os08g15030","No alias","Oryza sativa","aspartate carbamoyltransferase, putative, expressed","protein_coding"
"LOC_Os08g27824","No alias","Oryza sativa","NOL1/NOP2/sun family protein, putative, expressed","protein_coding"
"LOC_Os08g34720","No alias","Oryza sativa","D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed","protein_coding"
"LOC_Os08g39070","No alias","Oryza sativa","COP9 signalosome complex subunit 6a, putative, expressed","protein_coding"
"LOC_Os08g40570","No alias","Oryza sativa","pyridoxamine 5'-phosphate oxidase family protein, putative, expressed","protein_coding"
"LOC_Os08g45130","No alias","Oryza sativa","histone-lysine N-methyltransferase, putative, expressed","protein_coding"
"LOC_Os09g13400","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os09g25460","No alias","Oryza sativa","transferase family protein, putative, expressed","protein_coding"
"LOC_Os09g29080","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os09g37070","No alias","Oryza sativa","pentatricopeptide, putative, expressed","protein_coding"
"LOC_Os10g03910","No alias","Oryza sativa","OsFBX354 - F-box domain containing protein, expressed","protein_coding"
"LOC_Os10g28640","No alias","Oryza sativa","RIO1 family protein, expressed","protein_coding"
"LOC_Os10g30790","No alias","Oryza sativa","inorganic phosphate transporter, putative, expressed","protein_coding"
"LOC_Os10g34320","No alias","Oryza sativa","ribosomal L18p/L5e family protein, expressed","protein_coding"
"LOC_Os10g39020","No alias","Oryza sativa","fringe-related protein, putative, expressed","protein_coding"
"LOC_Os10g40960","No alias","Oryza sativa","oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed","protein_coding"
"LOC_Os11g03670","No alias","Oryza sativa","Mpv17 / PMP22 family domain containing protein, expressed","protein_coding"
"LOC_Os11g04200","No alias","Oryza sativa","M phase phosphoprotein 10, putative, expressed","protein_coding"
"LOC_Os11g05490","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os11g15570","No alias","Oryza sativa","Ser/Thr protein phosphatase family protein, putative, expressed","protein_coding"
"LOC_Os11g20689","No alias","Oryza sativa","exosome complex exonuclease, putative, expressed","protein_coding"
"LOC_Os11g37080","No alias","Oryza sativa","h/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed","protein_coding"
"LOC_Os11g43620","No alias","Oryza sativa","LSM domain containing protein, expressed","protein_coding"
"LOC_Os12g03430","No alias","Oryza sativa","Mpv17 / PMP22 family domain containing protein, expressed","protein_coding"
"LOC_Os12g04010","No alias","Oryza sativa","M-phase phosphoprotein 10, putative, expressed","protein_coding"
"LOC_Os12g17070","No alias","Oryza sativa","radical SAM enzyme, putative, expressed","protein_coding"
"MA_10021946g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding"
"MA_10275802g0010","No alias","Picea abies","(p49043|vpe_citsi : 250.0) Vacuolar-processing enzyme precursor (EC 3.4.22.-) (VPE) - Citrus sinensis (Sweet orange) & (at4g32940 : 221.0) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death.; gamma vacuolar processing enzyme (GAMMA-VPE); CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: alpha-vacuolar processing enzyme (TAIR:AT2G25940.1); Has 789 Blast hits to 787 proteins in 239 species: Archae - 4; Bacteria - 12; Metazoa - 277; Fungi - 115; Plants - 257; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). & (reliability: 442.0) &  (original description: no original description)","protein_coding"
"MA_10426006g0010","No alias","Picea abies","(at2g46520 : 699.0) cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative; FUNCTIONS IN: protein transporter activity, importin-alpha export receptor activity, binding; INVOLVED IN: intracellular protein transport, cell proliferation, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), CAS/CSE, C-terminal (InterPro:IPR005043), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Exportin/Importin, Cse1-like (InterPro:IPR013713); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G59020.2); Has 1154 Blast hits to 1141 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 461; Fungi - 384; Plants - 163; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink). & (reliability: 1398.0) &  (original description: no original description)","protein_coding"
"MA_10428053g0010","No alias","Picea abies","(at1g18070 : 269.0) Translation elongation factor EF1A/initiation factor IF2gamma family protein; FUNCTIONS IN: translation factor activity, nucleic acid binding, GTP binding, GTPase activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT5G60390.3). & (p25698|ef1a_soybn : 92.4) Elongation factor 1-alpha (EF-1-alpha) - Glycine max (Soybean) & (reliability: 538.0) &  (original description: no original description)","protein_coding"
"MA_10428764g0010","No alias","Picea abies","(at2g40290 : 202.0) Eukaryotic translation initiation factor 2 subunit 1; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Eukaryotic translation initiation factor 2, alpha subunit (InterPro:IPR011488); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 alpha subunit (TAIR:AT5G05470.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 404.0) &  (original description: no original description)","protein_coding"
"MA_10430797g0010","No alias","Picea abies","(at1g71230 : 463.0) Encodes a subunit of the COP9 complex, similar to  JAB1, a specific mammalian coactivator of AP-1 transcription. Involved in protein deneddylation. Double mutants with CSN5A are constitutively photomorphogenic (de-etiolated) and have abnormal auxin responses.; COP9-signalosome 5B (CSN5B); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9 signalosome 5A (TAIR:AT1G22920.1); Has 1278 Blast hits to 1275 proteins in 253 species: Archae - 0; Bacteria - 6; Metazoa - 459; Fungi - 394; Plants - 243; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink). & (reliability: 926.0) &  (original description: no original description)","protein_coding"
"MA_10432049g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding"
"MA_10433989g0020","No alias","Picea abies","(at1g52360 : 165.0) Coatomer, beta' subunit; FUNCTIONS IN: structural molecule activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Coatomer, beta' subunit (InterPro:IPR016453), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Coatomer, beta' subunit (TAIR:AT3G15980.3). & (reliability: 330.0) &  (original description: no original description)","protein_coding"
"MA_1611g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding"
"MA_18947g0010","No alias","Picea abies","(at4g08550 : 484.0) electron carriers;protein disulfide oxidoreductases; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like fold (InterPro:IPR012336), Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: glutaredoxin-related (TAIR:AT3G11920.1); Has 5684 Blast hits to 4425 proteins in 725 species: Archae - 19; Bacteria - 1130; Metazoa - 1053; Fungi - 285; Plants - 562; Viruses - 105; Other Eukaryotes - 2530 (source: NCBI BLink). & (reliability: 968.0) &  (original description: no original description)","protein_coding"
"MA_193136g0010","No alias","Picea abies","(at4g01000 : 97.1) Ubiquitin-like superfamily protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT3G06455.1); Has 9247 Blast hits to 4627 proteins in 669 species: Archae - 0; Bacteria - 50; Metazoa - 4022; Fungi - 1172; Plants - 2220; Viruses - 170; Other Eukaryotes - 1613 (source: NCBI BLink). & (reliability: 194.2) &  (original description: no original description)","protein_coding"
"MA_23261g0010","No alias","Picea abies","(at1g19025 : 223.0) DNA repair metallo-beta-lactamase family protein; CONTAINS InterPro DOMAIN/s: DNA repair metallo-beta-lactamase (InterPro:IPR011084); BEST Arabidopsis thaliana protein match is: DNA repair metallo-beta-lactamase family protein (TAIR:AT1G27410.1); Has 1078 Blast hits to 1060 proteins in 342 species: Archae - 34; Bacteria - 280; Metazoa - 259; Fungi - 220; Plants - 166; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink). & (reliability: 446.0) &  (original description: no original description)","protein_coding"
"MA_262g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding"
"MA_301724g0010","No alias","Picea abies","(at5g24030 : 267.0) Encodes a protein with ten predicted transmembrane helices. The SLAH3 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement an slac1-2 mutant suggesting that it performs a similar function. SLAH3:GFP localizes to the plasma membrane.; SLAC1 homologue 3 (SLAH3); FUNCTIONS IN: transporter activity; INVOLVED IN: cellular ion homeostasis; LOCATED IN: integral to membrane, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: C4-dicarboxylate transporter/malic acid transport protein (InterPro:IPR004695); BEST Arabidopsis thaliana protein match is: SLAC1 homologue 2 (TAIR:AT4G27970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 534.0) &  (original description: no original description)","protein_coding"
"MA_31993g0010","No alias","Picea abies","(at3g62630 : 124.0) Protein of unknown function (DUF1645); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1645) (TAIR:AT2G15760.1); Has 309 Blast hits to 289 proteins in 68 species: Archae - 3; Bacteria - 16; Metazoa - 56; Fungi - 10; Plants - 169; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). & (reliability: 248.0) &  (original description: no original description)","protein_coding"
"MA_348246g0010","No alias","Picea abies","(at5g60190 : 189.0) Encodes a protein that can cleave residues from the C-terminus of RUB1 to prepare it for conjugation to target proteins.; Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity, NEDD8-specific protease activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 378.0) &  (original description: no original description)","protein_coding"
"MA_48436g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding"
"MA_60062g0010","No alias","Picea abies","(at1g20410 : 241.0) Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity, RNA binding; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103); Has 545 Blast hits to 513 proteins in 206 species: Archae - 168; Bacteria - 1; Metazoa - 125; Fungi - 4; Plants - 38; Viruses - 0; Other Eukaryotes - 209 (source: NCBI BLink). & (reliability: 482.0) &  (original description: no original description)","protein_coding"
"MA_6422g0020","No alias","Picea abies","(at5g64630 : 489.0) Chromatin Assembly Factor-1 (CAF-1) p60 subunit. Involved in organization of the shoot and root apical meristems.  In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively.  Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.; FASCIATA 2 (FAS2); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of histone chaperone HIRA (TAIR:AT3G44530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 978.0) &  (original description: no original description)","protein_coding"
"MA_73g0010","No alias","Picea abies","(at5g65910 : 231.0) BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT3G49800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 462.0) &  (original description: no original description)","protein_coding"
"MA_77639g0010","No alias","Picea abies","(at5g66540 : 117.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 234.0) &  (original description: no original description)","protein_coding"
"MA_93039g0010","No alias","Picea abies","(at2g36310 : 206.0) uridine-ribohydrolase 1 (URH1); CONTAINS InterPro DOMAIN/s: Inosine/uridine-preferring nucleoside hydrolase (InterPro:IPR001910); BEST Arabidopsis thaliana protein match is: uridine-ribohydrolase  2 (TAIR:AT1G05620.1); Has 6361 Blast hits to 6297 proteins in 1364 species: Archae - 75; Bacteria - 4675; Metazoa - 179; Fungi - 233; Plants - 187; Viruses - 0; Other Eukaryotes - 1012 (source: NCBI BLink). & (reliability: 412.0) &  (original description: no original description)","protein_coding"
"MA_9973360g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding"
"Mp1g03350.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp1g03380.1","No alias","Marchantia polymorpha","Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana (sp|q39008|m3k1_arath : 89.4) & Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group(50.2.7 : 61.0)","protein_coding"
"Mp1g04140.1","No alias","Marchantia polymorpha","argininosuccinate lyase","protein_coding"
"Mp1g06890.1","No alias","Marchantia polymorpha","RNA helicase (Brr2)","protein_coding"
"Mp1g09110.1","No alias","Marchantia polymorpha","small subunit of ribonucleoside-diphosphate reductase heterodimer","protein_coding"
"Mp1g12630.1","No alias","Marchantia polymorpha","RAB-GTPase-activating protein (RAB-GAP)","protein_coding"
"Mp1g23020.1","No alias","Marchantia polymorpha","threonine-tRNA ligase","protein_coding"
"Mp1g23960.1","No alias","Marchantia polymorpha","NUP133 scaffold nucleoporin of nuclear pore complex","protein_coding"
"Mp1g27720.1","No alias","Marchantia polymorpha","protein kinase (LRR-XI)","protein_coding"
"Mp2g02750.1","No alias","Marchantia polymorpha","CKI1 cytokinin signalling pathway activator","protein_coding"
"Mp2g07950.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp2g16600.1","No alias","Marchantia polymorpha","LRR receptor-like serine/threonine-protein kinase OS=Arabidopsis thaliana (sp|c0lgr3|rgi3_arath : 296.0) & Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group(50.2.7 : 115.8)","protein_coding"
"Mp2g21800.1","No alias","Marchantia polymorpha","subfamily ABCG transporter","protein_coding"
"Mp2g26050.1","No alias","Marchantia polymorpha","component BOP1 of ribosome PES-BOP1-WDR12 (PeBoW) complex","protein_coding"
"Mp3g00010.1","No alias","Marchantia polymorpha","transcription factor (WRKY)","protein_coding"
"Mp3g10710.1","No alias","Marchantia polymorpha","phospholipase D (PLD-alpha). phospholipase D (PLD-epsilon)","protein_coding"
"Mp3g13910.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp3g16130.1","No alias","Marchantia polymorpha","RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana (sp|o65155|kelp_arath : 90.1)","protein_coding"
"Mp4g05370.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp4g06350.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp4g09260.1","No alias","Marchantia polymorpha","Met-tRNA positioning component eIF5B of initiator tRNA carrier complex","protein_coding"
"Mp4g09540.1","No alias","Marchantia polymorpha","helicase component eIF4A3 of RNA quality control Exon Junction complex","protein_coding"
"Mp4g11580.1","No alias","Marchantia polymorpha","component RNPS1 of RNA quality control Exon Junction complex","protein_coding"
"Mp4g13260.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp4g15990.1","No alias","Marchantia polymorpha","component DDB1 of UV-damaged DNA-binding protein (UV-DDB) heterodimer. core adaptor component DDB1 of COP10-DET1 (CDD) subcomplex. core adapter component (DDB1) of CUL4-DDB1 ubiquitination complex","protein_coding"
"Mp4g16850.1","No alias","Marchantia polymorpha","Phloretin 2-O-glucosyltransferase OS=Malus domestica (sp|b3tkc8|88f1g_maldo : 176.0) & Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase(50.2.4 : 152.5)","protein_coding"
"Mp5g00110.1","No alias","Marchantia polymorpha","C3H zinc finger transcription factor","protein_coding"
"Mp5g15430.1","No alias","Marchantia polymorpha","CASP-like protein 2U1 OS=Marchantia polymorpha (sp|p0dh82|cspl1_marpo : 403.0)","protein_coding"
"Mp5g19720.1","No alias","Marchantia polymorpha","deubiquitinase (UBP6-7)","protein_coding"
"Mp5g20660.1","No alias","Marchantia polymorpha","DELLA-type gibberellin signal transducer. transcription factor (GRAS). transcription factor (DELLA)","protein_coding"
"Mp5g23040.1","No alias","Marchantia polymorpha","cell cycle replicated DNA checkpoint protein (TopBP1)","protein_coding"
"Mp5g24280.1","No alias","Marchantia polymorpha","protein disulfide isomerase (PDI8)","protein_coding"
"Mp6g00440.1","No alias","Marchantia polymorpha","no description available(sp|q60ew9|ftip7_orysj : 926.0)","protein_coding"
"Mp6g01500.1","No alias","Marchantia polymorpha","CCT8 subunit theta of CCT chaperonin folding complex","protein_coding"
"Mp6g09620.1","No alias","Marchantia polymorpha","component PRL1/MAC2 of non-snRNP MOS4-associated complex","protein_coding"
"Mp6g10920.1","No alias","Marchantia polymorpha","component AUG5 of Augmin gamma-TuRC recruiting complex","protein_coding"
"Mp7g01470.1","No alias","Marchantia polymorpha","Protein SABRE OS=Arabidopsis thaliana (sp|q6imt1|sab_arath : 1340.0)","protein_coding"
"Mp7g01710.1","No alias","Marchantia polymorpha","APUM24 rRNA processing factor involved in ITS2 rRNA removal","protein_coding"
"Mp7g04610.1","No alias","Marchantia polymorpha","DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sativa subsp. japonica (sp|q6atj8|rh16_orysj : 544.0)","protein_coding"
"Mp7g05650.1","No alias","Marchantia polymorpha","subunit beta of class-II glucosidase II complex","protein_coding"
"Mp7g09630.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp7g11330.1","No alias","Marchantia polymorpha","G2-like GARP transcription factor","protein_coding"
"Mp7g13330.1","No alias","Marchantia polymorpha","component SF3B3 of splicing factor 3B complex","protein_coding"
"Mp7g18970.1","No alias","Marchantia polymorpha","mRNA poly-A-tail binding factor (PABP)","protein_coding"
"Mp7g19550.1","No alias","Marchantia polymorpha","pre-60S subunit nuclear export factor (NMD3)","protein_coding"
"Mp8g00320.1","No alias","Marchantia polymorpha","SSU processome assembly factor (MPP10)","protein_coding"
"Mp8g07230.1","No alias","Marchantia polymorpha","Receptor-like protein 4 OS=Arabidopsis thaliana (sp|f4hwl3|rlp4_arath : 329.0)","protein_coding"
"Mp8g07340.1","No alias","Marchantia polymorpha","susceptibility factor (EXA1)","protein_coding"
"Mp8g08470.1","No alias","Marchantia polymorpha","component CSN2 of COP9 signalosome complex","protein_coding"
"Mp8g11450.1","No alias","Marchantia polymorpha","transcription factor (AP2)","protein_coding"
"Mp8g16160.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Potri.012G082600","No alias","Populus trichocarpa","Function unknown","protein_coding"
"Potri.015G078500","No alias","Populus trichocarpa","Function unknown","protein_coding"
"Pp1s100_33V6","No alias","Physcomitrella patens","translation elongation factor g","protein_coding"
"Pp1s102_17V6","No alias","Physcomitrella patens","u3 small nucleolar ribonucleoprotein protein","protein_coding"
"Pp1s11_357V6","No alias","Physcomitrella patens","phosphoglycerate dehydrogenase","protein_coding"
"Pp1s134_55V6","No alias","Physcomitrella patens","at4g10060 t5l19_190","protein_coding"
"Pp1s136_37V6","No alias","Physcomitrella patens","transducin family protein wd-40 repeat family protein","protein_coding"
"Pp1s143_17V6","No alias","Physcomitrella patens","ubiquitin familyexpressed","protein_coding"
"Pp1s150_45V6","No alias","Physcomitrella patens","T29A15.4; band 7 family protein [Arabidopsis thaliana]","protein_coding"
"Pp1s154_85V6","No alias","Physcomitrella patens","F24B9.32; GTP1/OBG family protein [Arabidopsis thaliana]","protein_coding"
"Pp1s155_53V6","No alias","Physcomitrella patens","at3g06540 f5e6_13","protein_coding"
"Pp1s167_121V6","No alias","Physcomitrella patens","white-brown-complex abc transporter family","protein_coding"
"Pp1s167_21V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s17_214V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s19_69V6","No alias","Physcomitrella patens","F5I6.2; DNA-binding protein, putative [Arabidopsis thaliana]","protein_coding"
"Pp1s235_95V6","No alias","Physcomitrella patens","cytochrome p450-like protein","protein_coding"
"Pp1s243_72V6","No alias","Physcomitrella patens","pentatricopeptide repeat-containing","protein_coding"
"Pp1s24_158V6","No alias","Physcomitrella patens","amino acid binding","protein_coding"
"Pp1s24_60V6","No alias","Physcomitrella patens","coronitine insensitive 1","protein_coding"
"Pp1s24_69V6","No alias","Physcomitrella patens","hypothetical protein [Dictyostelium discoideum]","protein_coding"
"Pp1s251_76V6","No alias","Physcomitrella patens","mterf family protein","protein_coding"
"Pp1s25_226V6","No alias","Physcomitrella patens","fatty acid hydroxylase-like protein","protein_coding"
"Pp1s29_180V6","No alias","Physcomitrella patens","T23A1.11; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s323_77V6","No alias","Physcomitrella patens","hypothetical protein [Dictyostelium discoideum]","protein_coding"
"Pp1s32_187V6","No alias","Physcomitrella patens","nad kinase 1","protein_coding"
"Pp1s35_187V6","No alias","Physcomitrella patens","gibberellin 20-oxidase","protein_coding"
"Pp1s376_53V6","No alias","Physcomitrella patens","F23K16.15; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s37_119V6","No alias","Physcomitrella patens","u3 snornp-associated-like protein","protein_coding"
"Pp1s3_459V6","No alias","Physcomitrella patens","proteasome subunit beta type 4 precursor","protein_coding"
"Pp1s45_24V6","No alias","Physcomitrella patens","hypothetical protein [Oryza sativa (japonica cultivar-group)]","protein_coding"
"Pp1s478_14V6","No alias","Physcomitrella patens","F19K19.19; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s49_45V6","No alias","Physcomitrella patens","dna nad-dependent","protein_coding"
"Pp1s53_183V6","No alias","Physcomitrella patens","atp binding","protein_coding"
"Pp1s53_23V6","No alias","Physcomitrella patens","serine threonine protein kinase","protein_coding"
"Pp1s60_308V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s68_124V6","No alias","Physcomitrella patens","gtp binding","protein_coding"
"Pp1s79_108V6","No alias","Physcomitrella patens","contains ESTs D15403(C0585),C98080(C0585) unknown protein [Oryza sativa (japonica cultivar-group)]","protein_coding"
"Pp1s79_92V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s84_83V6","No alias","Physcomitrella patens","protein binding","protein_coding"
"Pp1s93_126V6","No alias","Physcomitrella patens","eukaryotic translation initiation factor 5","protein_coding"
"Pp1s94_163V6","No alias","Physcomitrella patens","ribosomal protein l1","protein_coding"
"PSME_00000796-RA","No alias","Pseudotsuga menziesii","(at5g05170 : 373.0) Encodes a cellulose synthase isomer. CESA3 mutants have cellulose defect in the primary cell wall. Multiple lines of evidence suggest that CESA3, along with CESA1 and CESA6 are present in the same plasma membrane complex for cellulose biosynthesis.  As inferred from the null role of secondary wall-type CesAs, included in a set of five primary wall-type CesAs that may support trichome cell wall thickening.; CONSTITUTIVE EXPRESSION OF VSP 1 (CEV1); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: primary cell wall biogenesis, cellulose biosynthetic process, defense response; LOCATED IN: Golgi apparatus, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: cellulose synthase 1 (TAIR:AT4G32410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q7xp59|glr31_orysa : 145.0) Glutamate receptor 3.1 precursor (Ligand-gated ion channel 3.1) - Oryza sativa (Rice) & (reliability: 746.0) &  (original description: no original description)","protein_coding"
"PSME_00000846-RA","No alias","Pseudotsuga menziesii","(at4g34200 : 789.0) embryo sac development arrest 9 (EDA9); FUNCTIONS IN: ATP binding; INVOLVED IN: megagametogenesis; LOCATED IN: mitochondrion, chloroplast, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: D-3-phosphoglycerate dehydrogenase (InterPro:IPR006236), D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), D-3-phosphogylcerate Dehydrogenase (InterPro:IPR015508), Amino acid-binding ACT (InterPro:IPR002912), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-3-phosphoglycerate dehydrogenase (TAIR:AT3G19480.1); Has 30608 Blast hits to 30602 proteins in 2772 species: Archae - 489; Bacteria - 18520; Metazoa - 741; Fungi - 1175; Plants - 586; Viruses - 5; Other Eukaryotes - 9092 (source: NCBI BLink). & (p13443|dhgy_cucsa : 107.0) Glycerate dehydrogenase (EC 1.1.1.29) (NADH-dependent hydroxypyruvate reductase) (HPR) (GDH) - Cucumis sativus (Cucumber) & (reliability: 1578.0) &  (original description: no original description)","protein_coding"
"PSME_00000882-RA","No alias","Pseudotsuga menziesii","(at5g66540 : 290.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 580.0) &  (original description: no original description)","protein_coding"
"PSME_00001649-RA","No alias","Pseudotsuga menziesii","(at4g04910 : 1014.0) N-ethylmaleimide sensitive factor; N-ethylmaleimide sensitive factor (NSF); FUNCTIONS IN: protein binding; LOCATED IN: vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30539 Blast hits to 27448 proteins in 3106 species: Archae - 1540; Bacteria - 10808; Metazoa - 4854; Fungi - 3637; Plants - 2891; Viruses - 27; Other Eukaryotes - 6782 (source: NCBI BLink). & (p54774|cdc48_soybn : 168.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 2028.0) &  (original description: no original description)","protein_coding"
"PSME_00001818-RA","No alias","Pseudotsuga menziesii","(at3g25900 : 450.0) HMT-1; CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: homocysteine S-methyltransferase 3 (TAIR:AT3G22740.1). & (q9fun0|hmt1_maize : 436.0) Homocysteine S-methyltransferase 1 (EC 2.1.1.10) (S-methylmethionine:homocysteine methyltransferase 1) (SMM:Hcy S-methyltransferase 1) (ZmHMT-1) - Zea mays (Maize) & (reliability: 900.0) &  (original description: no original description)","protein_coding"
"PSME_00002716-RA","No alias","Pseudotsuga menziesii","(at4g01560 : 372.0) maternal effect embryo arrest 49 (MEE49); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); BEST Arabidopsis thaliana protein match is: Ribosomal RNA processing Brix domain protein (TAIR:AT1G63780.1); Has 893 Blast hits to 882 proteins in 227 species: Archae - 2; Bacteria - 0; Metazoa - 265; Fungi - 337; Plants - 121; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink). & (reliability: 744.0) &  (original description: no original description)","protein_coding"
"PSME_00002763-RA","No alias","Pseudotsuga menziesii","(q9xer8|rab7_goshi : 310.0) Ras-related protein Rab7 - Gossypium hirsutum (Upland cotton) & (at1g52280 : 308.0) RAB GTPase homolog G3D (RABG3d); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog G3C (TAIR:AT3G16100.1); Has 26220 Blast hits to 26194 proteins in 779 species: Archae - 32; Bacteria - 221; Metazoa - 13502; Fungi - 3923; Plants - 2848; Viruses - 20; Other Eukaryotes - 5674 (source: NCBI BLink). & (reliability: 616.0) &  (original description: no original description)","protein_coding"
"PSME_00003150-RA","No alias","Pseudotsuga menziesii","(at3g09630 : 531.0) Ribosomal protein L4/L1 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L4/L1e (InterPro:IPR002136), Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site (InterPro:IPR013000); BEST Arabidopsis thaliana protein match is: Ribosomal protein L4/L1 family (TAIR:AT5G02870.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1062.0) &  (original description: no original description)","protein_coding"
"PSME_00004064-RA","No alias","Pseudotsuga menziesii","(at1g19360 : 548.0) Nucleotide-diphospho-sugar transferase family protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT1G75110.1); Has 297 Blast hits to 291 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 280; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). & (reliability: 1096.0) &  (original description: no original description)","protein_coding"
"PSME_00004325-RA","No alias","Pseudotsuga menziesii","(at1g10950 : 829.0) Encodes an Arabidopsis Transmembrane nine (TMN) protein.  Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis.; transmembrane nine 1 (TMN1); LOCATED IN: integral to membrane, Golgi apparatus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1); Has 1611 Blast hits to 1538 proteins in 326 species: Archae - 0; Bacteria - 16; Metazoa - 610; Fungi - 273; Plants - 454; Viruses - 0; Other Eukaryotes - 258 (source: NCBI BLink). & (reliability: 1658.0) &  (original description: no original description)","protein_coding"
"PSME_00005767-RA","No alias","Pseudotsuga menziesii","(at3g49180 : 275.0) ROOT INITIATION DEFECTIVE 3 (RID3); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G11160.1); Has 42486 Blast hits to 21489 proteins in 714 species: Archae - 48; Bacteria - 7251; Metazoa - 15456; Fungi - 9258; Plants - 4698; Viruses - 0; Other Eukaryotes - 5775 (source: NCBI BLink). & (reliability: 550.0) &  (original description: no original description)","protein_coding"
"PSME_00006514-RA","No alias","Pseudotsuga menziesii","(at1g27600 : 414.0) Encodes a member of the GT43 family glycosyltransferases involved in glucuronoxylan biosynthesis: AT2G37090 (IRX9) and AT1G27600 (IRX9-L or I9H, IRX9 homolog); AT4G36890 (IRX14) and AT5G67230 (IRX14-L or I14H, IRX14 homolog). They form two functionally non-redundant groups essential for the normal elongation of glucuronoxylan backbone. I9H functions redundantly with IRX9, I14H is redundant with IRX14.  IRX9 or I9H do not complement IRX14, IRX14 or I14H do not complement IRX9.; IRREGULAR XYLEM 9-LIKE (IRX9-L); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT2G37090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 828.0) &  (original description: no original description)","protein_coding"
"PSME_00007504-RA","No alias","Pseudotsuga menziesii","(q5nay4|hisx_orysa : 328.0) Histidinol dehydrogenase, chloroplast precursor (EC 1.1.1.23) (HDH) - Oryza sativa (Rice) & (at5g63890 : 321.0) Encodes histidinol dehydrogenase. Up-regulated in response to UV-B.; histidinol dehydrogenase (HDH); FUNCTIONS IN: histidinol dehydrogenase activity; INVOLVED IN: response to UV, pollen development; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Histidinol dehydrogenase, conserved site (InterPro:IPR001692), Histidinol dehydrogenase, prokaryotic-type (InterPro:IPR012131); Has 9146 Blast hits to 9146 proteins in 2211 species: Archae - 179; Bacteria - 4194; Metazoa - 4; Fungi - 211; Plants - 72; Viruses - 0; Other Eukaryotes - 4486 (source: NCBI BLink). & (reliability: 642.0) &  (original description: no original description)","protein_coding"
"PSME_00009850-RA","No alias","Pseudotsuga menziesii","(at1g23170 : 403.0) Protein of unknown function DUF2359, transmembrane; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2359, transmembrane (InterPro:IPR019308); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF2359, transmembrane (TAIR:AT1G70770.2). & (reliability: 806.0) &  (original description: no original description)","protein_coding"
"PSME_00010048-RA","No alias","Pseudotsuga menziesii","(at4g38430 : 516.0) Member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily, also known as DUF315). Interacts with ROP1 but the whole protein lacks Rho guanyl-nucleotide exchange factor activity in vitro. The DUF315/PRONE domain is sufficient to confer RopGEF catalytic activity.; rho guanyl-nucleotide exchange factor 1 (ROPGEF1); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 7 (TAIR:AT5G02010.1); Has 308 Blast hits to 304 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 1032.0) &  (original description: no original description)","protein_coding"
"PSME_00010844-RA","No alias","Pseudotsuga menziesii","(p29677|mppa_soltu : 489.0) Mitochondrial-processing peptidase alpha subunit, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP) (Ubiquinol-cytochrome-c reductase subunit II) (EC 1.10.2.2) - Solanum tuberosum (Potato) & (at1g51980 : 447.0) Insulinase (Peptidase family M16) protein; FUNCTIONS IN: metalloendopeptidase activity, ATP binding; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: mitochondrion, plasma membrane, plastid, mitochondrial respiratory chain complex III, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, zinc-binding site (InterPro:IPR001431), Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: mitochondrial processing peptidase alpha subunit (TAIR:AT3G16480.1); Has 5945 Blast hits to 5839 proteins in 1469 species: Archae - 10; Bacteria - 3395; Metazoa - 673; Fungi - 538; Plants - 242; Viruses - 3; Other Eukaryotes - 1084 (source: NCBI BLink). & (reliability: 894.0) &  (original description: no original description)","protein_coding"
"PSME_00011787-RA","No alias","Pseudotsuga menziesii","(at1g48110 : 346.0) evolutionarily conserved C-terminal region 7 (ECT7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 6 (TAIR:AT3G17330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 692.0) &  (original description: no original description)","protein_coding"
"PSME_00011927-RA","No alias","Pseudotsuga menziesii","(at4g14360 : 823.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G23300.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1646.0) &  (original description: no original description)","protein_coding"
"PSME_00011989-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00012047-RA","No alias","Pseudotsuga menziesii","(at5g12860 : 731.0) dicarboxylate transporter 1 (DiT1); FUNCTIONS IN: oxoglutarate:malate antiporter activity; INVOLVED IN: N-terminal protein myristoylation, malate transport, response to nematode; LOCATED IN: mitochondrion, chloroplast, plastid, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/sulphate symporter (InterPro:IPR001898); BEST Arabidopsis thaliana protein match is: dicarboxylate transport 2.1 (TAIR:AT5G64290.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q41364|sot1_spiol : 723.0) 2-oxoglutarate/malate translocator, chloroplast precursor - Spinacia oleracea (Spinach) & (reliability: 1462.0) &  (original description: no original description)","protein_coding"
"PSME_00012298-RA","No alias","Pseudotsuga menziesii","(at2g31260 : 823.0) Involved in autophagy, the process of vacuolar bulk degradation of cytoplasmic components.  Mutant shows accelerated bolting and senescence.; autophagy 9 (APG9); CONTAINS InterPro DOMAIN/s: Autophagy-related protein 9 (InterPro:IPR007241); Has 489 Blast hits to 477 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 214; Fungi - 166; Plants - 51; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). & (reliability: 1646.0) &  (original description: no original description)","protein_coding"
"PSME_00013104-RA","No alias","Pseudotsuga menziesii","(at4g02750 : 494.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). & (q76c99|rf1_orysa : 90.9) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 988.0) &  (original description: no original description)","protein_coding"
"PSME_00015204-RA","No alias","Pseudotsuga menziesii","(at5g17420 : 556.0) Encodes a xylem-specific cellulose synthase that is phosphorylated on one or more serine residues (on either S185 or one of S180 or S181).; IRREGULAR XYLEM 3 (IRX3); FUNCTIONS IN: cellulose synthase activity; INVOLVED IN: cellulose biosynthetic process, plant-type cell wall biogenesis, secondary cell wall biogenesis, rhamnogalacturonan I side chain metabolic process; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: Cellulose synthase family protein (TAIR:AT5G05170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1112.0) &  (original description: no original description)","protein_coding"
"PSME_00015534-RA","No alias","Pseudotsuga menziesii","(at5g53540 : 258.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G27680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p54774|cdc48_soybn : 89.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 488.0) &  (original description: no original description)","protein_coding"
"PSME_00015708-RA","No alias","Pseudotsuga menziesii","(at1g22340 : 407.0) UDP-glucosyl transferase 85A7 (UGT85A7); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 85A2 (TAIR:AT1G22360.1); Has 7763 Blast hits to 7662 proteins in 424 species: Archae - 0; Bacteria - 289; Metazoa - 2112; Fungi - 32; Plants - 5212; Viruses - 58; Other Eukaryotes - 60 (source: NCBI BLink). & (p16165|ufo2_maize : 196.0) Anthocyanidin 3-O-glucosyltransferase (EC 2.4.1.115) (Flavonol 3-O-glucosyltransferase) (UDP-glucose flavonoid 3-O-glucosyltransferase) (Bronze-1) (Bz-Mc2 allele) - Zea mays (Maize) & (reliability: 780.0) &  (original description: no original description)","protein_coding"
"PSME_00015793-RA","No alias","Pseudotsuga menziesii","(at5g55300 : 762.0) Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. Functions in stem cell maintenance at all stages of shoot and floral meristems and in the regulation of gene silencing.; DNA topoisomerase I alpha (TOP1ALPHA); FUNCTIONS IN: protein binding, DNA topoisomerase type I activity; INVOLVED IN: in 8 processes; LOCATED IN: chromosome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499); BEST Arabidopsis thaliana protein match is: DNA topoisomerase 1 beta (TAIR:AT5G55310.1). & (p93119|top1_dauca : 656.0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) - Daucus carota (Carrot) & (reliability: 1524.0) &  (original description: no original description)","protein_coding"
"PSME_00016277-RA","No alias","Pseudotsuga menziesii","(at3g22370 : 466.0) Encodes AOX1a, an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without energy conservations.  It is regulated through transcriptional control and by pyruvate.  Plays a role in shoot acclimation to low temperature.  Also is capable of ameliorating reactive oxygen species production when the cytochrome pathway is inhibited.  AOX1a also functions as a marker for mitochondrial retrograde response.; alternative oxidase 1A (AOX1A); FUNCTIONS IN: alternative oxidase activity; INVOLVED IN: oxidation reduction, cellular respiration, response to cold, response to stress, mitochondria-nucleus signaling pathway; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Alternative oxidase (InterPro:IPR002680); BEST Arabidopsis thaliana protein match is: alternative oxidase 1B (TAIR:AT3G22360.1); Has 1299 Blast hits to 1299 proteins in 245 species: Archae - 0; Bacteria - 109; Metazoa - 12; Fungi - 194; Plants - 380; Viruses - 0; Other Eukaryotes - 604 (source: NCBI BLink). & (q40578|aox2_tobac : 464.0) Alternative oxidase 2, mitochondrial precursor (EC 1.-.-.-) - Nicotiana tabacum (Common tobacco) & (reliability: 932.0) &  (original description: no original description)","protein_coding"
"PSME_00016383-RA","No alias","Pseudotsuga menziesii","(at5g57300 : 283.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UbiE/COQ5 methyltransferase (InterPro:IPR004033); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G23360.1). & (reliability: 566.0) &  (original description: no original description)","protein_coding"
"PSME_00016824-RA","No alias","Pseudotsuga menziesii","(at4g36960 : 367.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G07810.1); Has 349914 Blast hits to 333627 proteins in 17318 species: Archae - 7092; Bacteria - 199106; Metazoa - 73875; Fungi - 10838; Plants - 25006; Viruses - 24105; Other Eukaryotes - 9892 (source: NCBI BLink). & (p19682|roc3_nicsy : 84.3) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP) - Nicotiana sylvestris (Wood tobacco) & (reliability: 734.0) &  (original description: no original description)","protein_coding"
"PSME_00017784-RA","No alias","Pseudotsuga menziesii","(at5g27640 : 1064.0) encodes a member of eukaryotic translation initiation factor 3B family.; translation initiation factor 3B1 (TIF3B1); FUNCTIONS IN: nucleic acid binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cytosol, eukaryotic translation initiation factor 3 complex, nucleus; EXPRESSED IN: guard cell, cultured cell, seed; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 2A, central region (InterPro:IPR013979), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Translation initiation factor eIF-3b (InterPro:IPR011400); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3B-2 (TAIR:AT5G25780.1); Has 966 Blast hits to 959 proteins in 251 species: Archae - 0; Bacteria - 19; Metazoa - 298; Fungi - 315; Plants - 111; Viruses - 6; Other Eukaryotes - 217 (source: NCBI BLink). & (p56821|if39_tobac : 1046.0) Eukaryotic translation initiation factor 3 subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) - Nicotiana tabacum (Common tobacco) & (reliability: 2128.0) &  (original description: no original description)","protein_coding"
"PSME_00018591-RA","No alias","Pseudotsuga menziesii","(at5g56510 : 185.0) Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.; pumilio 12 (PUM12); FUNCTIONS IN: RNA binding, binding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 7 (TAIR:AT1G78160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 370.0) &  (original description: no original description)","protein_coding"
"PSME_00019651-RA","No alias","Pseudotsuga menziesii","(at1g36370 : 654.0) Encodes a putative serine hydroxymethyltransferase.; serine hydroxymethyltransferase 7 (SHM7); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: response to cadmium ion, glycine metabolic process, L-serine metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: serine hydroxymethyltransferase 6 (TAIR:AT1G22020.1); Has 11689 Blast hits to 11664 proteins in 2845 species: Archae - 258; Bacteria - 6485; Metazoa - 362; Fungi - 287; Plants - 350; Viruses - 6; Other Eukaryotes - 3941 (source: NCBI BLink). & (p34899|glym_pea : 457.0) Serine hydroxymethyltransferase, mitochondrial precursor (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) - Pisum sativum (Garden pea) & (reliability: 1308.0) &  (original description: no original description)","protein_coding"
"PSME_00021389-RA","No alias","Pseudotsuga menziesii","(at5g14040 : 526.0) phosphate transporter 3;1 (PHT3;1); FUNCTIONS IN: binding; INVOLVED IN: transport, transmembrane transport; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: phosphate transporter 3;2 (TAIR:AT3G48850.1); Has 17134 Blast hits to 11746 proteins in 429 species: Archae - 0; Bacteria - 0; Metazoa - 7375; Fungi - 4841; Plants - 3332; Viruses - 3; Other Eukaryotes - 1583 (source: NCBI BLink). & (reliability: 1052.0) &  (original description: no original description)","protein_coding"
"PSME_00021570-RA","No alias","Pseudotsuga menziesii","(at3g57540 : 117.0) Remorin family protein; CONTAINS InterPro DOMAIN/s: Remorin, C-terminal (InterPro:IPR005516); BEST Arabidopsis thaliana protein match is: Remorin family protein (TAIR:AT2G41870.1); Has 443 Blast hits to 443 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 1; Plants - 440; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 234.0) &  (original description: no original description)","protein_coding"
"PSME_00021582-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00021630-RA","No alias","Pseudotsuga menziesii","(at4g26750 : 215.0) hydroxyproline-rich glycoprotein family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF605 (InterPro:IPR006745); BEST Arabidopsis thaliana protein match is: glucan synthase-like 11 (TAIR:AT3G59100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 430.0) &  (original description: no original description)","protein_coding"
"PSME_00022232-RA","No alias","Pseudotsuga menziesii","(at1g13560 : 405.0) Encodes aminoalcoholphosphotransferase AAPT1.; aminoalcoholphosphotransferase 1 (AAPT1); FUNCTIONS IN: phosphatidyltransferase activity, phosphotransferase activity, for other substituted phosphate groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CDP-alcohol phosphatidyltransferase (InterPro:IPR000462); BEST Arabidopsis thaliana protein match is: aminoalcoholphosphotransferase (TAIR:AT3G25585.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 810.0) &  (original description: no original description)","protein_coding"
"PSME_00022763-RA","No alias","Pseudotsuga menziesii","(at4g32330 : 135.0) TPX2 (targeting protein for Xklp2) protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT2G25480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 270.0) &  (original description: no original description)","protein_coding"
"PSME_00025395-RA","No alias","Pseudotsuga menziesii","(at3g22590 : 385.0) Encodes PLANT HOMOLOGOUS TO PARAFIBROMIN (PHP), a homolog of human Paf1 Complex (Paf1C) subunit Parafibromin. Human Parafibromin assists in mediating output from the Wnt signaling pathway, and dysfunction of the encoding gene HRPT2 conditions specific cancer-related disease phenotypes. PHP resides in a ~670-kDa protein complex in nuclear extracts, and physically interacts with other known Paf1C-related proteins in vivo. Loss of PHP specifically conditioned accelerated phase transition from vegetative growth to flowering and resulted in misregulation of a very limited subset of genes that included the flowering repressor FLOWERING LOCUS C (FLC).; PLANT HOMOLOGOUS TO PARAFIBROMIN (PHP); CONTAINS InterPro DOMAIN/s: RNA polymerase II accessory factor, Cdc73 (InterPro:IPR007852); Has 502 Blast hits to 395 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 257; Fungi - 127; Plants - 42; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). & (reliability: 770.0) &  (original description: no original description)","protein_coding"
"PSME_00025554-RA","No alias","Pseudotsuga menziesii","(at4g39870 : 97.1) TLD-domain containing nucleolar protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TLDc (InterPro:IPR006571); BEST Arabidopsis thaliana protein match is: TLD-domain containing nucleolar protein (TAIR:AT2G05590.2). & (reliability: 194.2) &  (original description: no original description)","protein_coding"
"PSME_00027085-RA","No alias","Pseudotsuga menziesii","(at1g09700 : 88.6) Encodes a nuclear dsRNA binding protein. Involved in mRNA cleavage. The mutant is characterized by shorter stature, delayed flowering, leaf hyponasty, reduced fertility, decreased rate of root growth, and an altered root gravitropic response. It also exhibits less sensitivity to auxin and cytokinin.; HYPONASTIC LEAVES 1 (HYL1); CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: dsRNA-binding protein 2 (TAIR:AT2G28380.1); Has 992 Blast hits to 893 proteins in 320 species: Archae - 14; Bacteria - 506; Metazoa - 117; Fungi - 6; Plants - 270; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink). & (reliability: 177.2) &  (original description: no original description)","protein_coding"
"PSME_00027168-RA","No alias","Pseudotsuga menziesii","(at1g18260 : 348.0) HCP-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G73570.1); Has 24350 Blast hits to 8436 proteins in 1359 species: Archae - 0; Bacteria - 17163; Metazoa - 848; Fungi - 960; Plants - 547; Viruses - 27; Other Eukaryotes - 4805 (source: NCBI BLink). & (reliability: 696.0) &  (original description: no original description)","protein_coding"
"PSME_00028159-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00028180-RA","No alias","Pseudotsuga menziesii","(at5g18420 : 438.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 876.0) &  (original description: no original description)","protein_coding"
"PSME_00028506-RA","No alias","Pseudotsuga menziesii","(at4g31590 : 904.0) encodes a gene similar to cellulose synthase; Cellulose-synthase-like C5 (CSLC5); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Glycosyl transferase family 2 protein (TAIR:AT2G24630.1); Has 5645 Blast hits to 5642 proteins in 1596 species: Archae - 219; Bacteria - 4417; Metazoa - 64; Fungi - 93; Plants - 510; Viruses - 16; Other Eukaryotes - 326 (source: NCBI BLink). & (reliability: 1808.0) &  (original description: no original description)","protein_coding"
"PSME_00029724-RA","No alias","Pseudotsuga menziesii","(at5g66540 : 116.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 232.0) &  (original description: no original description)","protein_coding"
"PSME_00031044-RA","No alias","Pseudotsuga menziesii","(q04960|dnjh_cucsa : 603.0) DnaJ protein homolog (DNAJ-1) - Cucumis sativus (Cucumber) & (at3g44110 : 593.0) homologous to the co-chaperon DNAJ protein from E coli; DNAJ homologue 3 (ATJ3); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding, response to salt stress, regulation of ATPase activity; LOCATED IN: nucleolus, cell wall, plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ homologue 2 (TAIR:AT5G22060.1); Has 26521 Blast hits to 26345 proteins in 3465 species: Archae - 213; Bacteria - 10015; Metazoa - 4280; Fungi - 2432; Plants - 2547; Viruses - 88; Other Eukaryotes - 6946 (source: NCBI BLink). & (reliability: 1186.0) &  (original description: no original description)","protein_coding"
"PSME_00033196-RA","No alias","Pseudotsuga menziesii","(at3g51840 : 501.0) Encodes a short-chain acyl-CoA oxidase, which catalyzes the first step of peroxisomal fatty acid beta-oxidation during early, post-germinative growth in oilseed species. Null mutants virtually lack short-chain acyl-CoA and are resistant to 2,4-dichlorophenoxybutyric acid, which is converted to the herbicide and auxin analogue 2,4-dichlorophenoxyacetic acid by beta-oxidation. Despite the almost complete loss of short-chain activity, lipid catabolism and seedling growth and establishment was unaltered in the acx4 mutant. However, double mutants in acx3acx4 (acx3 encodes medium chain acyl CoA oxidase) were not viable and arrested during embryogenesis.; acyl-CoA oxidase 4 (ACX4); FUNCTIONS IN: oxidoreductase activity, acyl-CoA oxidase activity; INVOLVED IN: fatty acid beta-oxidation, short-chain fatty acid metabolic process, embryo development ending in seed dormancy; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA oxidase/dehydrogenase, type 1 (InterPro:IPR006090), Acyl-CoA dehydrogenase/oxidase (InterPro:IPR009100), Acyl-CoA dehydrogenase/oxidase, N-terminal (InterPro:IPR013786), Acyl-CoA oxidase/dehydrogenase, central domain (InterPro:IPR006091), Acyl-CoA dehydrogenase, conserved site (InterPro:IPR006089), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075), Acyl-CoA dehydrogenase, N-terminal (InterPro:IPR006092); BEST Arabidopsis thaliana protein match is: isovaleryl-CoA-dehydrogenase (TAIR:AT3G45300.1); Has 36828 Blast hits to 36765 proteins in 1995 species: Archae - 537; Bacteria - 24188; Metazoa - 1639; Fungi - 822; Plants - 341; Viruses - 0; Other Eukaryotes - 9301 (source: NCBI BLink). & (q9fs88|ivd1_soltu : 129.0) Isovaleryl-CoA dehydrogenase 1, mitochondrial precursor (EC 1.3.99.10) (IVD 1) - Solanum tuberosum (Potato) & (reliability: 1002.0) &  (original description: no original description)","protein_coding"
"PSME_00033280-RA","No alias","Pseudotsuga menziesii","(at3g06720 : 736.0) Encodes importin alpha involved in nuclear import.; AT-IMP; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: cytosol, nuclear envelope, nucleolus, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding domain (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 2 (TAIR:AT4G16143.2); Has 4059 Blast hits to 2974 proteins in 281 species: Archae - 4; Bacteria - 22; Metazoa - 1537; Fungi - 665; Plants - 1109; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink). & (q71vm4|ima1a_orysa : 701.0) Importin alpha-1a subunit - Oryza sativa (Rice) & (reliability: 1472.0) &  (original description: no original description)","protein_coding"
"PSME_00033681-RA","No alias","Pseudotsuga menziesii","(at2g33440 : 164.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor, large subunit, splicing factor (TAIR:AT1G60900.1); Has 807 Blast hits to 787 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 371; Fungi - 101; Plants - 250; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). & (reliability: 328.0) &  (original description: no original description)","protein_coding"
"PSME_00034135-RA","No alias","Pseudotsuga menziesii","(at5g57990 : 441.0) Encodes a ubiquitin-specific protease.; ubiquitin-specific protease 23 (UBP23); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 19 (TAIR:AT2G24640.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 882.0) &  (original description: no original description)","protein_coding"
"PSME_00034409-RA","No alias","Pseudotsuga menziesii","(at5g60450 : 148.0) Encodes a member of the ARF family of transcription factors which mediate auxin responses. ARF4 appears to have redundant function with ETT(ARF3) in specifying abaxial cell identity.; auxin response factor 4 (ARF4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: vegetative phase change, regulation of transcription, DNA-dependent, abaxial cell fate specification; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (TAIR:AT2G33860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 296.0) &  (original description: no original description)","protein_coding"
"PSME_00035676-RA","No alias","Pseudotsuga menziesii","(at1g22270 : 114.0) Encodes SMO2 (Small Organ 2).  Modulates progression of cell division during organ growth.; Trm112p-like protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF343 (InterPro:IPR005651); BEST Arabidopsis thaliana protein match is: Trm112p-like protein (TAIR:AT1G78190.1); Has 419 Blast hits to 419 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 151; Fungi - 129; Plants - 62; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). & (reliability: 228.0) &  (original description: no original description)","protein_coding"
"PSME_00035817-RA","No alias","Pseudotsuga menziesii","(at5g60980 : 275.0) Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT3G25150.1); Has 36196 Blast hits to 15965 proteins in 1132 species: Archae - 9; Bacteria - 13386; Metazoa - 10288; Fungi - 3119; Plants - 4760; Viruses - 542; Other Eukaryotes - 4092 (source: NCBI BLink). & (reliability: 550.0) &  (original description: no original description)","protein_coding"
"PSME_00035830-RA","No alias","Pseudotsuga menziesii","(at5g15870 : 332.0) glycosyl hydrolase family 81 protein; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, endo-1,3(4)-beta-glucanase activity; INVOLVED IN: response to cyclopentenone; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 81 (InterPro:IPR005200); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 81 protein (TAIR:AT1G18310.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 664.0) &  (original description: no original description)","protein_coding"
"PSME_00036090-RA","No alias","Pseudotsuga menziesii","(at5g53480 : 1155.0) ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, chloroplast, nuclear pore, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G08947.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 2310.0) &  (original description: no original description)","protein_coding"
"PSME_00036706-RA","No alias","Pseudotsuga menziesii","(at2g42520 : 771.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT3G58510.3); Has 140248 Blast hits to 67514 proteins in 3679 species: Archae - 1004; Bacteria - 58923; Metazoa - 37605; Fungi - 9665; Plants - 13202; Viruses - 1099; Other Eukaryotes - 18750 (source: NCBI BLink). & (p46942|db10_nicsy : 328.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 1542.0) &  (original description: no original description)","protein_coding"
"PSME_00037049-RA","No alias","Pseudotsuga menziesii","(at3g58570 : 405.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G42520.1); Has 86488 Blast hits to 59724 proteins in 3531 species: Archae - 886; Bacteria - 35070; Metazoa - 23291; Fungi - 6787; Plants - 8100; Viruses - 385; Other Eukaryotes - 11969 (source: NCBI BLink). & (p46942|db10_nicsy : 196.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 810.0) &  (original description: no original description)","protein_coding"
"PSME_00037364-RA","No alias","Pseudotsuga menziesii","(p49661|copd_orysa : 358.0) Coatomer subunit delta (Delta-coat protein) (Delta-COP) (Archain) - Oryza sativa (Rice) & (at5g05010 : 344.0) clathrin adaptor complexes medium subunit family protein; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Longin-like (InterPro:IPR011012); Has 717 Blast hits to 709 proteins in 223 species: Archae - 0; Bacteria - 2; Metazoa - 237; Fungi - 248; Plants - 88; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink). & (reliability: 688.0) &  (original description: no original description)","protein_coding"
"PSME_00038361-RA","No alias","Pseudotsuga menziesii","(at1g15340 : 108.0) Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.; methyl-CPG-binding domain 10 (MBD10); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 11 (TAIR:AT3G15790.1). & (reliability: 216.0) &  (original description: no original description)","protein_coding"
"PSME_00038635-RA","No alias","Pseudotsuga menziesii","(at5g16880 : 434.0) Target of Myb protein 1; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT1G06210.1); Has 1482 Blast hits to 1482 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 785; Fungi - 378; Plants - 250; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). & (reliability: 868.0) &  (original description: no original description)","protein_coding"
"PSME_00038672-RA","No alias","Pseudotsuga menziesii","(at1g20575 : 343.0) Nucleotide-diphospho-sugar transferases superfamily protein; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT2G39630.1); Has 22705 Blast hits to 22656 proteins in 2589 species: Archae - 933; Bacteria - 16103; Metazoa - 288; Fungi - 260; Plants - 98; Viruses - 23; Other Eukaryotes - 5000 (source: NCBI BLink). & (reliability: 686.0) &  (original description: no original description)","protein_coding"
"PSME_00040940-RA","No alias","Pseudotsuga menziesii","(at1g12220 : 181.0) Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB.; RESISTANT TO P. SYRINGAE 5 (RPS5); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT1G12280.1). & (reliability: 362.0) &  (original description: no original description)","protein_coding"
"PSME_00042292-RA","No alias","Pseudotsuga menziesii","(at1g64590 : 200.0) NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G24050.1); Has 62352 Blast hits to 62301 proteins in 3130 species: Archae - 564; Bacteria - 41137; Metazoa - 4183; Fungi - 3748; Plants - 2129; Viruses - 0; Other Eukaryotes - 10591 (source: NCBI BLink). & (reliability: 400.0) &  (original description: no original description)","protein_coding"
"PSME_00043578-RA","No alias","Pseudotsuga menziesii","(at1g26320 : 112.0) Zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alkenal reductase (TAIR:AT5G16970.1). & (reliability: 224.0) &  (original description: no original description)","protein_coding"
"PSME_00044639-RA","No alias","Pseudotsuga menziesii","(o80377|rssa_dauca : 414.0) 40S ribosomal protein SA (p40) - Daucus carota (Carrot) & (at1g72370 : 387.0) acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue.; 40s ribosomal protein SA (P40); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: response to salt stress, mature ribosome assembly, translation, response to osmotic stress; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S2 (InterPro:IPR001865), Ribosomal protein S2, conserved site (InterPro:IPR018130), Ribosomal protein S2, eukaryotic/archaeal (InterPro:IPR005707); BEST Arabidopsis thaliana protein match is: 40s ribosomal protein SA B (TAIR:AT3G04770.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 774.0) &  (original description: no original description)","protein_coding"
"PSME_00045033-RA","No alias","Pseudotsuga menziesii","(at5g19780 : 802.0) Encodes an isoform of alpha tubulin. Closely related to adjacent gene TUA3 suggesting recent duplication.; tubulin alpha-5 (TUA5); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to cadmium ion, microtubule-based process; LOCATED IN: tubulin complex, cytosol, cell wall, membrane; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-3 (TAIR:AT5G19770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p33627|tba6_maize : 799.0) Tubulin alpha-6 chain (Alpha-6 tubulin) - Zea mays (Maize) & (reliability: 1604.0) &  (original description: no original description)","protein_coding"
"PSME_00045468-RA","No alias","Pseudotsuga menziesii","(at5g41190 : 464.0) CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 928.0) &  (original description: no original description)","protein_coding"
"PSME_00046198-RA","No alias","Pseudotsuga menziesii","(at5g39390 : 195.0) Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: EF-TU receptor (TAIR:AT5G20480.1); Has 105441 Blast hits to 101727 proteins in 4175 species: Archae - 121; Bacteria - 11886; Metazoa - 36736; Fungi - 8087; Plants - 34277; Viruses - 298; Other Eukaryotes - 14036 (source: NCBI BLink). & (q8lpb4|pskr_dauca : 129.0) Phytosulfokine receptor precursor (EC 2.7.11.1) (Phytosulfokine LRR receptor kinase) - Daucus carota (Carrot) & (reliability: 390.0) &  (original description: no original description)","protein_coding"
"PSME_00046222-RA","No alias","Pseudotsuga menziesii","(at2g47330 : 952.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G20920.1); Has 46798 Blast hits to 46047 proteins in 3085 species: Archae - 817; Bacteria - 24489; Metazoa - 6167; Fungi - 4661; Plants - 2616; Viruses - 11; Other Eukaryotes - 8037 (source: NCBI BLink). & (p46942|db10_nicsy : 328.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 1904.0) &  (original description: no original description)","protein_coding"
"PSME_00047531-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00047741-RA","No alias","Pseudotsuga menziesii","(at3g53690 : 185.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G14250.1); Has 3158 Blast hits to 3141 proteins in 218 species: Archae - 0; Bacteria - 0; Metazoa - 1307; Fungi - 709; Plants - 671; Viruses - 0; Other Eukaryotes - 471 (source: NCBI BLink). & (reliability: 370.0) &  (original description: no original description)","protein_coding"
"PSME_00048684-RA","No alias","Pseudotsuga menziesii","(at2g25870 : 265.0) haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: metallopeptidase activity, hydrolase activity, catalytic activity, zinc ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0054, conserved site (InterPro:IPR020549), Cof protein (InterPro:IPR000150), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200), Uncharacterised protein family UPF0054 (InterPro:IPR002036); Has 22843 Blast hits to 22827 proteins in 2747 species: Archae - 229; Bacteria - 20428; Metazoa - 41; Fungi - 14; Plants - 67; Viruses - 0; Other Eukaryotes - 2064 (source: NCBI BLink). & (reliability: 530.0) &  (original description: no original description)","protein_coding"
"PSME_00049438-RA","No alias","Pseudotsuga menziesii","(at3g47570 : 582.0) Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G47580.1); Has 213556 Blast hits to 133070 proteins in 4776 species: Archae - 194; Bacteria - 22980; Metazoa - 68117; Fungi - 10236; Plants - 86850; Viruses - 328; Other Eukaryotes - 24851 (source: NCBI BLink). & (p93194|rpk1_iponi : 388.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 1164.0) &  (original description: no original description)","protein_coding"
"PSME_00049546-RA","No alias","Pseudotsuga menziesii","(at3g47570 : 80.1) Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G47580.1); Has 213556 Blast hits to 133070 proteins in 4776 species: Archae - 194; Bacteria - 22980; Metazoa - 68117; Fungi - 10236; Plants - 86850; Viruses - 328; Other Eukaryotes - 24851 (source: NCBI BLink). & (reliability: 160.2) &  (original description: no original description)","protein_coding"
"PSME_00050831-RA","No alias","Pseudotsuga menziesii","(at4g34900 : 94.7) xanthine dehydrogenase  2 (XDH2); FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction, allantoin biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Aldehyde oxidase/xanthine dehydrogenase (InterPro:IPR016208), Ferredoxin (InterPro:IPR001041), Molybdopterin dehydrogenase, FAD-binding (InterPro:IPR002346), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), FAD-binding, type 2, subdomain 1 (InterPro:IPR016167), [2Fe-2S]-binding (InterPro:IPR002888), FAD-binding, type 2 (InterPro:IPR016166), CO dehydrogenase flavoprotein, C-terminal (InterPro:IPR005107), 2Fe-2S ferredoxin, iron-sulphur binding site (InterPro:IPR006058), CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 (InterPro:IPR016169), Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead (InterPro:IPR000674), Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding (InterPro:IPR008274); BEST Arabidopsis thaliana protein match is: xanthine dehydrogenase 1 (TAIR:AT4G34890.1); Has 21587 Blast hits to 20745 proteins in 1345 species: Archae - 453; Bacteria - 12993; Metazoa - 1073; Fungi - 109; Plants - 266; Viruses - 0; Other Eukaryotes - 6693 (source: NCBI BLink). & (reliability: 189.4) &  (original description: no original description)","protein_coding"
"PSME_00051002-RA","No alias","Pseudotsuga menziesii","(p09189|hsp7c_pethy : 147.0) Heat shock cognate 70 kDa protein - Petunia hybrida (Petunia) & (at3g12580 : 146.0) heat shock protein 70 (HSP70); FUNCTIONS IN: ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: cytosol, mitochondrion, cell wall, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock cognate protein 70-1 (TAIR:AT5G02500.1); Has 34126 Blast hits to 33731 proteins in 4830 species: Archae - 159; Bacteria - 16481; Metazoa - 3906; Fungi - 1752; Plants - 1258; Viruses - 310; Other Eukaryotes - 10260 (source: NCBI BLink). & (reliability: 292.0) &  (original description: no original description)","protein_coding"
"PSME_00051003-RA","No alias","Pseudotsuga menziesii","(at3g12580 : 785.0) heat shock protein 70 (HSP70); FUNCTIONS IN: ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: cytosol, mitochondrion, cell wall, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock cognate protein 70-1 (TAIR:AT5G02500.1); Has 34126 Blast hits to 33731 proteins in 4830 species: Archae - 159; Bacteria - 16481; Metazoa - 3906; Fungi - 1752; Plants - 1258; Viruses - 310; Other Eukaryotes - 10260 (source: NCBI BLink). & (p09189|hsp7c_pethy : 776.0) Heat shock cognate 70 kDa protein - Petunia hybrida (Petunia) & (reliability: 1570.0) &  (original description: no original description)","protein_coding"
"PSME_00052942-RA","No alias","Pseudotsuga menziesii","(at3g47110 : 314.0) Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: EF-TU receptor (TAIR:AT5G20480.1); Has 201898 Blast hits to 124021 proteins in 4668 species: Archae - 159; Bacteria - 19385; Metazoa - 64482; Fungi - 8819; Plants - 85595; Viruses - 264; Other Eukaryotes - 23194 (source: NCBI BLink). & (p93194|rpk1_iponi : 266.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 628.0) &  (original description: no original description)","protein_coding"
"PSME_00053512-RA","No alias","Pseudotsuga menziesii","(at4g24220 : 477.0) encodes a novel protein containing mammalian death domain involved in programmed cell death. Gene is expressed in vascular system and mutants carrying dominant mutation in the gene have defective vascular patterning. Gene expression is induced specifically by wounding.; VEIN PATTERNING 1 (VEP1); FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: xylem and phloem pattern formation, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G58750.1); Has 711 Blast hits to 707 proteins in 202 species: Archae - 0; Bacteria - 240; Metazoa - 0; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). & (reliability: 954.0) &  (original description: no original description)","protein_coding"
"PSME_00055783-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00056819-RA","No alias","Pseudotsuga menziesii","(at3g58660 : 181.0) Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42650.1); Has 3644 Blast hits to 2818 proteins in 411 species: Archae - 34; Bacteria - 198; Metazoa - 1370; Fungi - 494; Plants - 482; Viruses - 5; Other Eukaryotes - 1061 (source: NCBI BLink). & (reliability: 362.0) &  (original description: no original description)","protein_coding"
"PSME_00056959-RA","No alias","Pseudotsuga menziesii","(at3g58660 : 305.0) Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: nucleolus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42650.1); Has 3644 Blast hits to 2818 proteins in 411 species: Archae - 34; Bacteria - 198; Metazoa - 1370; Fungi - 494; Plants - 482; Viruses - 5; Other Eukaryotes - 1061 (source: NCBI BLink). & (reliability: 610.0) &  (original description: no original description)","protein_coding"
"Seita.1G058600.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.1G092100.1","No alias","Setaria italica ","arginine methyltransferase *(PRMT5/CAU1) & histone methylase *(CAU1/PRMT5)","protein_coding"
"Seita.1G094800.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.1G120100.1","No alias","Setaria italica ","component *(mL102) of large mitoribosomal-subunit proteome","protein_coding"
"Seita.1G207100.1","No alias","Setaria italica ","histone chaperone *(NRP)","protein_coding"
"Seita.1G215000.1","No alias","Setaria italica ","assembly factor involved in ITS1 rRNA removal *(BRIX1)","protein_coding"
"Seita.1G235700.1","No alias","Setaria italica ","phosphorolytic exoribonuclease *(PNP) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Seita.1G283400.1","No alias","Setaria italica ","regulatory protein *(SBA) of mitochondrial nucleoid organization","protein_coding"
"Seita.1G290000.1","No alias","Setaria italica ","regulatory protein *(SBA) of mitochondrial nucleoid organization","protein_coding"
"Seita.1G301700.1","No alias","Setaria italica ","rRNA methyltransferase *(NOP2)","protein_coding"
"Seita.1G324900.1","No alias","Setaria italica ","receptor component *(OM64) of outer mitochondrion membrane TOM translocation system","protein_coding"
"Seita.1G374000.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G044300.1","No alias","Setaria italica ","component *(Sm-B) of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex","protein_coding"
"Seita.2G076600.1","No alias","Setaria italica ","component *(mS29) of small mitoribosomal-subunit proteome","protein_coding"
"Seita.2G077000.1","No alias","Setaria italica ","SSU processome assembly factor *(RRP5)","protein_coding"
"Seita.2G108200.1","No alias","Setaria italica ","nucleoporin of nuclear pore complex *(NUP54)","protein_coding"
"Seita.2G112700.1","No alias","Setaria italica ","SSU processome assembly factor *(FAP7/AAK6) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Seita.2G114800.1","No alias","Setaria italica ","component *(NRPA3) of RNA polymerase I complex & component *(NRPC3) of RNA polymerase III complex","protein_coding"
"Seita.2G124700.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G142600.1","No alias","Setaria italica ","ribosomal protein arginine N-methyltransferase *(PRMT3)","protein_coding"
"Seita.2G210000.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G240300.1","No alias","Setaria italica ","tRNA cytidine-methyltransferase *(TRM4) & EC_2.1 transferase transferring one-carbon group","protein_coding"
"Seita.2G273300.1","No alias","Setaria italica ","regulatory protein *(THAL) of rRNA transcription control","protein_coding"
"Seita.2G292600.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G293000.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G325600.1","No alias","Setaria italica ","pre-60S ribosomal subunit assembly factor *(NSA1)","protein_coding"
"Seita.2G380200.1","No alias","Setaria italica ","component *(WDR12) of ribosome PES-BOP1-WDR12 (PeBoW) complex","protein_coding"
"Seita.2G381300.1","No alias","Setaria italica ","RNA editing factor *(ORRM3)","protein_coding"
"Seita.2G382300.1","No alias","Setaria italica ","component *(mL104) of large mitoribosomal-subunit proteome & regulatory protein *(PNM1) of mitochondrial translation machinery","protein_coding"
"Seita.2G404800.1","No alias","Setaria italica ","pseudouridine synthase component *(Nap57/CBF5) of H/ACA snoRNP RNA pseudouridylation complex","protein_coding"
"Seita.2G413900.1","No alias","Setaria italica ","rRNA biogenesis RNA helicase *(ROK1)","protein_coding"
"Seita.2G417700.1","No alias","Setaria italica ","component *(uS9m) of small mitoribosomal-subunit proteome","protein_coding"
"Seita.2G440400.1","No alias","Setaria italica ","LON-type protease","protein_coding"
"Seita.3G059800.1","No alias","Setaria italica ","splicing factor *(CFM9)","protein_coding"
"Seita.3G107800.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.3G108300.1","No alias","Setaria italica ","EC_6.1 ligase forming carbon-oxygen bond & glutamine-tRNA ligase","protein_coding"
"Seita.3G120700.1","No alias","Setaria italica ","helicase UAP56","protein_coding"
"Seita.3G132000.1","No alias","Setaria italica ","tRNA cytidine acetyltransferase","protein_coding"
"Seita.3G150300.1","No alias","Setaria italica ","component *(bL21m) of large mitoribosomal-subunit proteome","protein_coding"
"Seita.3G175900.1","No alias","Setaria italica ","SSU processome assembly factor *(UTP1/PWP2)","protein_coding"
"Seita.3G213400.1","No alias","Setaria italica ","component *(uS12) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Seita.3G232200.1","No alias","Setaria italica ","multisubstrate deoxyribonucleoside kinase *(TK2) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Seita.3G240200.1","No alias","Setaria italica ","protease *(Deg)","protein_coding"
"Seita.3G247400.1","No alias","Setaria italica ","mTERF-type transcription factor","protein_coding"
"Seita.3G281100.1","No alias","Setaria italica ","auxiliary component *(NAA25) of NatB N-terminal acetylase complex","protein_coding"
"Seita.3G322400.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.3G347100.1","No alias","Setaria italica ","component *(NRPA7) of RNA polymerase I complex","protein_coding"
"Seita.3G351500.1","No alias","Setaria italica ","chaperone *(Hsp90)","protein_coding"
"Seita.3G354800.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.3G357800.1","No alias","Setaria italica ","RNA editing factor *(ORRM3)","protein_coding"
"Seita.3G384700.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.3G392200.1","No alias","Setaria italica ","substrate adaptor of CUL4-based E3 ubiquitin ligase complex","protein_coding"
"Seita.4G012800.1","No alias","Setaria italica ","RNA editing factor *(MORF)","protein_coding"
"Seita.4G017800.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.4G031000.1","No alias","Setaria italica ","type-I arginine N-methyltransferase *(PRMT10)","protein_coding"
"Seita.4G055300.1","No alias","Setaria italica ","component *(uS15m) of small mitoribosomal-subunit proteome","protein_coding"
"Seita.4G142900.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.4G167800.1","No alias","Setaria italica ","mRNA helicase *(RH31)","protein_coding"
"Seita.4G200700.1","No alias","Setaria italica ","EC_6.1 ligase forming carbon-oxygen bond & isoleucine-tRNA ligase","protein_coding"
"Seita.4G201000.1","No alias","Setaria italica ","SSU processome assembly factor *(UTP21)","protein_coding"
"Seita.4G211100.1","No alias","Setaria italica ","RNA editing factor *(MORF)","protein_coding"
"Seita.4G217700.1","No alias","Setaria italica ","component *(NRPA1) of RNA polymerase I complex","protein_coding"
"Seita.4G220400.1","No alias","Setaria italica ","component *(CLO/SNU114/MAC11)  of MAC spliceosome-associated complex","protein_coding"
"Seita.4G234900.1","No alias","Setaria italica ","component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling complex","protein_coding"
"Seita.4G235000.1","No alias","Setaria italica ","component *(eEF1B-gamma) of eEF1B eEF1A-GDP-recycling complex","protein_coding"
"Seita.4G238200.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.4G254100.1","No alias","Setaria italica ","subunit eta *(CCT7) of CCT chaperonin folding complex","protein_coding"
"Seita.4G257300.1","No alias","Setaria italica ","component *(POP1) of RNA-dependent RNase P complex","protein_coding"
"Seita.5G007100.1","No alias","Setaria italica ","endoribonuclease *(RNase Z) & EC_3.1 hydrolase acting on ester bond","protein_coding"
"Seita.5G027300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G042800.1","No alias","Setaria italica ","channel-forming component *(Tom40) of outer mitochondrion membrane TOM translocation system","protein_coding"
"Seita.5G051400.1","No alias","Setaria italica ","XRN4-exoribonuclease cofactor *(LARP1)","protein_coding"
"Seita.5G057000.1","No alias","Setaria italica ","pseudouridine synthase component *(Nap57/CBF5) of H/ACA snoRNP RNA pseudouridylation complex","protein_coding"
"Seita.5G061400.1","No alias","Setaria italica ","component *(uL3m) of large mitoribosomal-subunit proteome","protein_coding"
"Seita.5G068700.1","No alias","Setaria italica ","component *(DSP1) of DSP snRNA processing complex","protein_coding"
"Seita.5G075900.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G099100.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G114600.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G216700.1","No alias","Setaria italica ","regulatory protein *(RGG) of mRNA quality control","protein_coding"
"Seita.5G241400.1","No alias","Setaria italica ","ssDNA-binding protein *(SSB)","protein_coding"
"Seita.5G245100.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G256800.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G270500.1","No alias","Setaria italica ","component *(NRPC13/RPC82) of TFIIIe transcription factor module","protein_coding"
"Seita.5G294100.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G310400.1","No alias","Setaria italica ","RNA editing factor *(MEF8) & RNA editing factor *(DYW2)","protein_coding"
"Seita.5G333700.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G357000.1","No alias","Setaria italica ","snoRNP rRNA methylation complex assembly factor *(NUFIP)","protein_coding"
"Seita.5G376500.1","No alias","Setaria italica ","component *(eL36) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Seita.5G422200.1","No alias","Setaria italica ","HD2-type histone deacetylase *(HD2/HDT)","protein_coding"
"Seita.5G433800.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G459200.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G462300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G465300.1","No alias","Setaria italica ","subunit alpha *(QCR2) of cytochrome c reductase subcomplex & subunit alpha of MPP mitochondrial signal peptidase heterodimer & EC_3.4 hydrolase acting on peptide bond (peptidase)","protein_coding"
"Seita.5G467400.1","No alias","Setaria italica ","component *(mS81) of small mitoribosomal-subunit proteome","protein_coding"
"Seita.6G026400.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.6G035600.1","No alias","Setaria italica ","regulatory protein *(NCL) of rRNA transcription","protein_coding"
"Seita.6G045100.1","No alias","Setaria italica ","DNA polymerase *(POP)","protein_coding"
"Seita.6G099900.1","No alias","Setaria italica ","scaffold nucleoporin of nuclear pore complex *(NUP43)","protein_coding"
"Seita.6G140100.1","No alias","Setaria italica ","component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex","protein_coding"
"Seita.6G253600.1","No alias","Setaria italica ","pre-60S ribosomal-subunit proteome export factor *(Bud20)","protein_coding"
"Seita.7G035100.1","No alias","Setaria italica ","primase component *(POLA4) of DNA polymerase alpha complex","protein_coding"
"Seita.7G037000.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.7G113400.1","No alias","Setaria italica ","peptidyl-prolyl cis-trans isomerase *(FKBP43/53)","protein_coding"
"Seita.7G126300.1","No alias","Setaria italica ","component of FtsH3/10 matrix-AAA protease heterodimer","protein_coding"
"Seita.7G144900.1","No alias","Setaria italica ","component *(NRPC5) of RNA polymerase III complex & component *(NRPD5) of RNA polymerase IV complex & component *(NRPA5) of RNA polymerase I complex & component *(NRPB5) of RNA polymerase II complex","protein_coding"
"Seita.7G146100.1","No alias","Setaria italica ","mitochondrial transcript stability factor *(MTSF1)","protein_coding"
"Seita.7G147700.1","No alias","Setaria italica ","translation ribosome recycling factor *(RRF)","protein_coding"
"Seita.7G153300.1","No alias","Setaria italica ","nascent RNA chaperone *(LA)","protein_coding"
"Seita.7G158500.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.7G162500.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.7G200100.1","No alias","Setaria italica ","component *(TRM6) of TRM61-TRM6 tRNA adenosine-methyltransferase complex","protein_coding"
"Seita.7G214100.1","No alias","Setaria italica ","SSU processome assembly factor *(NOC4)","protein_coding"
"Seita.7G232800.1","No alias","Setaria italica ","component *(uL5) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Seita.7G291600.1","No alias","Setaria italica ","pre-40S ribosomal subunit assembly factor *(UTP22)","protein_coding"
"Seita.7G311500.1","No alias","Setaria italica ","substrate adaptor *(HTD1/DWD1) of CUL4-based E3 ubiquitin ligase complex","protein_coding"
"Seita.7G314400.1","No alias","Setaria italica ","SSU processome assembly factor *(MPP10)","protein_coding"
"Seita.8G009000.1","No alias","Setaria italica ","transposon-derived factor HDP1","protein_coding"
"Seita.8G022100.1","No alias","Setaria italica ","SSU processome assembly factor *(MPP10)","protein_coding"
"Seita.8G095000.1","No alias","Setaria italica ","RNA editing factor *(MORF)","protein_coding"
"Seita.8G156800.1","No alias","Setaria italica ","tRNA cytidine acetyltransferase adaptor protein","protein_coding"
"Seita.8G161700.1","No alias","Setaria italica ","core component *(GAR1) of H/ACA snoRNP RNA pseudouridylation complex","protein_coding"
"Seita.9G009200.1","No alias","Setaria italica ","translation elongation factor *(EF-Tu)","protein_coding"
"Seita.9G025100.1","No alias","Setaria italica ","rRNA processing factor involved in ITS2 rRNA removal *(APUM24)","protein_coding"
"Seita.9G051000.1","No alias","Setaria italica ","pre-60S ribosomal subunit assembly factor *(NOP4)","protein_coding"
"Seita.9G078000.1","No alias","Setaria italica ","proteasome assembly chaperone PAC2","protein_coding"
"Seita.9G094800.1","No alias","Setaria italica ","component *(TRM82) of TRM8-TRM82 tRNA guanosine-methyltransferase complex","protein_coding"
"Seita.9G100700.1","No alias","Setaria italica ","scaffold nucleoporin of nuclear pore complex *(ELYS)","protein_coding"
"Seita.9G121200.1","No alias","Setaria italica ","RNA editing factor *(OZ)","protein_coding"
"Seita.9G158600.1","No alias","Setaria italica ","SSU processome assembly factor *(RRP9/YAO1)","protein_coding"
"Seita.9G171700.1","No alias","Setaria italica ","component *(ELP1) of ELONGATOR transcription elongation complex","protein_coding"
"Seita.9G174300.1","No alias","Setaria italica ","SSU processome assembly factor *(UTP2/NOP14)","protein_coding"
"Seita.9G178100.1","No alias","Setaria italica ","EC_6.1 ligase forming carbon-oxygen bond & lysine-tRNA ligase","protein_coding"
"Seita.9G203600.1","No alias","Setaria italica ","component *(bL22m) of large mitoribosomal-subunit proteome","protein_coding"
"Seita.9G206700.1","No alias","Setaria italica ","component *(NOC2) of ribosomal-subunit proteome nuclear export complexes","protein_coding"
"Seita.9G212100.1","No alias","Setaria italica ","DNA ligase *(LIG1) & DNA replication DNA ligase *(LIG1) & EC_6.5 ligase forming phosphoric ester bond","protein_coding"
"Seita.9G216000.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G220300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G243800.1","No alias","Setaria italica ","exoribonuclease *(RRP6L)","protein_coding"
"Seita.9G362600.1","No alias","Setaria italica ","mRNA endoribonuclease *(G3BP)","protein_coding"
"Seita.9G403000.1","No alias","Setaria italica ","scaffold component *(Nop56) of snoRNP rRNA methylation complex","protein_coding"
"Seita.9G404600.1","No alias","Setaria italica ","scaffold component *(Nop58) of snoRNP rRNA methylation complex","protein_coding"
"Seita.9G404700.1","No alias","Setaria italica ","scaffold component *(Nop58) of snoRNP rRNA methylation complex","protein_coding"
"Seita.9G408900.1","No alias","Setaria italica ","pre-60S ribosomal subunit assembly factor *(SSF1)","protein_coding"
"Seita.9G414500.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G435300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G435400.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G447500.1","No alias","Setaria italica ","component *(DSP3) of DSP snRNA processing complex & regulatory protein *(SIEL) of plasmodesmata intercellular trafficking","protein_coding"
"Seita.9G519300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G521400.1","No alias","Setaria italica ","adenylosuccinate synthetase *(PUR11) & EC_6.3 ligase forming carbon-nitrogen bond","protein_coding"
"Seita.9G528100.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G537800.1","No alias","Setaria italica ","SSU processome assembly factor *(UTP12)","protein_coding"
"Sobic.001G007800.1","No alias","Sorghum bicolor ","SSU processome assembly factor *(SOF1)","protein_coding"
"Sobic.001G011000.1","No alias","Sorghum bicolor ","translation elongation factor *(EF-Tu)","protein_coding"
"Sobic.001G021300.1","No alias","Sorghum bicolor ","mRNA-translocation factor *(eEF2))","protein_coding"
"Sobic.001G069900.1","No alias","Sorghum bicolor ","IMP dehydrogenase *(IMPDH) & EC_1.1 oxidoreductase acting on CH-OH group of donor","protein_coding"
"Sobic.001G206500.1","No alias","Sorghum bicolor ","component *(NOC2) of ribosomal-subunit proteome nuclear export complexes","protein_coding"
"Sobic.001G259000.4","No alias","Sorghum bicolor ","component *(eIF2B-beta) of eIF2B eIF2-GDP recycling complex","protein_coding"
"Sobic.001G318100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G334300.1","No alias","Sorghum bicolor ","component *(eS19) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Sobic.001G363000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G376900.1","No alias","Sorghum bicolor ","SSU processome assembly factor *(UTP14)","protein_coding"
"Sobic.001G377800.2","No alias","Sorghum bicolor ","component *(eL18) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Sobic.001G401500.2","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G429600.1","No alias","Sorghum bicolor ","nucleocytoplasmic import karyopherin *(IMB4)","protein_coding"
"Sobic.001G530800.1","No alias","Sorghum bicolor ","subunit delta *(CCT4) of CCT chaperonin folding complex","protein_coding"
"Sobic.001G532400.1","No alias","Sorghum bicolor ","insertase component *(Oxa1) of inner mitochondrion membrane presequence-dependent insertion system & membrane insertase (Oxa1) of cytochrome c oxidase assembly","protein_coding"
"Sobic.002G005700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G112100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G234300.1","No alias","Sorghum bicolor ","tRNA cytidine-methyltransferase *(TRM4) & EC_2.1 transferase transferring one-carbon group","protein_coding"
"Sobic.002G242700.1","No alias","Sorghum bicolor ","component *(TFC1/Tau95) of TFIIIc transcription factor complex","protein_coding"
"Sobic.002G255300.1","No alias","Sorghum bicolor ","component *(eL32) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Sobic.002G267300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G279800.2","No alias","Sorghum bicolor ","SSU processome assembly factor *(MPP10)","protein_coding"
"Sobic.002G295900.1","No alias","Sorghum bicolor ","component *(uS15m) of small mitoribosomal-subunit proteome","protein_coding"
"Sobic.002G324300.1","No alias","Sorghum bicolor ","tyrosyl-DNA phosphodiesterase *(TDP1)","protein_coding"
"Sobic.002G325400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G364500.1","No alias","Sorghum bicolor ","component *(eS1) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Sobic.002G365900.1","No alias","Sorghum bicolor ","component *(WDR12) of ribosome PES-BOP1-WDR12 (PeBoW) complex","protein_coding"
"Sobic.002G371100.1","No alias","Sorghum bicolor ","component *(uS3) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Sobic.002G372500.1","No alias","Sorghum bicolor ","tRNA export karyopherin *(XPOT) & nucleocytoplasmic export karyopherin *(XPO3/XPOT)","protein_coding"
"Sobic.002G379500.3","No alias","Sorghum bicolor ","component *(eS6) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Sobic.002G384700.2","No alias","Sorghum bicolor ","component *(uS4) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Sobic.002G408900.1","No alias","Sorghum bicolor ","component *(mS83) of small mitoribosomal-subunit proteome","protein_coding"
"Sobic.003G008600.1","No alias","Sorghum bicolor ","component *(eIF3l) of eIF3 mRNA-to-PIC binding complex","protein_coding"
"Sobic.003G036400.1","No alias","Sorghum bicolor ","component *(eIF3a) of eIF3 mRNA-to-PIC binding complex","protein_coding"
"Sobic.003G156500.1","No alias","Sorghum bicolor ","component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex","protein_coding"
"Sobic.003G257200.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.003G326900.1","No alias","Sorghum bicolor ","regulatory protein *(GCD1) involved in gametogenesis","protein_coding"
"Sobic.003G407800.1","No alias","Sorghum bicolor ","scaffold component *(Nop58) of snoRNP rRNA methylation complex","protein_coding"
"Sobic.003G408300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.003G424800.1","No alias","Sorghum bicolor ","pre-60S ribosomal subunit assembly factor *(NOP15)","protein_coding"
"Sobic.003G436700.1","No alias","Sorghum bicolor ","component *(eS10) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Sobic.004G130200.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.004G173100.1","No alias","Sorghum bicolor ","component *(RRP45) of exosome EXO9 core complex","protein_coding"
"Sobic.004G178500.1","No alias","Sorghum bicolor ","ARF-type transcription factor","protein_coding"
"Sobic.004G198400.1","No alias","Sorghum bicolor ","component *(eL6) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Sobic.004G305100.1","No alias","Sorghum bicolor ","mTERF-type transcription factor","protein_coding"
"Sobic.004G320500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.004G340400.1","No alias","Sorghum bicolor ","component *(eIF2B-epsilon) of eIF2B eIF2-GDP recycling complex","protein_coding"
"Sobic.005G129900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.006G041100.2","No alias","Sorghum bicolor ","mRNA endoribonuclease *(G3BP)","protein_coding"
"Sobic.006G084000.1","No alias","Sorghum bicolor ","threonylcarbamoyladenosine methylthiotransferase","protein_coding"
"Sobic.006G086600.1","No alias","Sorghum bicolor ","component *(ELP1) of ELONGATOR transcription elongation complex","protein_coding"
"Sobic.006G106100.1","No alias","Sorghum bicolor ","component *(uS11) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Sobic.006G109700.2","No alias","Sorghum bicolor ","substrate-to-CDC48 bridging factor *(PUX3/4/5)","protein_coding"
"Sobic.006G138100.1","No alias","Sorghum bicolor ","component *(uS17) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Sobic.006G143200.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.006G153200.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.006G213400.2","No alias","Sorghum bicolor ","bifunctional aminoimidazole-carboximide RN transformylase and IMP cyclohydrolase *(PUR9/10)","protein_coding"
"Sobic.006G221200.1","No alias","Sorghum bicolor ","component *(eL27) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Sobic.006G235700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.006G278500.2","No alias","Sorghum bicolor ","GMP synthetase *(GMPS) & EC_6.3 ligase forming carbon-nitrogen bond","protein_coding"
"Sobic.007G220300.1","No alias","Sorghum bicolor ","component *(ELP2) of ELONGATOR transcription elongation complex","protein_coding"
"Sobic.008G004000.1","No alias","Sorghum bicolor ","pre-60S ribosomal-subunit proteome nuclear export factor *(MRT4)","protein_coding"
"Sobic.008G021100.1","No alias","Sorghum bicolor ","component *(uS9) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Sobic.009G045900.2","No alias","Sorghum bicolor ","EC_6.1 ligase forming carbon-oxygen bond & histidine-tRNA ligase","protein_coding"
"Sobic.009G101200.1","No alias","Sorghum bicolor ","auxiliary component *(NAA25) of NatB N-terminal acetylase complex","protein_coding"
"Sobic.009G113900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.009G115700.1","No alias","Sorghum bicolor ","component *(eS4) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Sobic.009G144300.1","No alias","Sorghum bicolor ","component *(eS12) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Sobic.009G175600.1","No alias","Sorghum bicolor ","LRR-VIII-1 protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Sobic.009G204400.1","No alias","Sorghum bicolor ","SSU processome assembly factor *(MPP10)","protein_coding"
"Sobic.009G212300.1","No alias","Sorghum bicolor ","component *(eIF3f) of eIF3 mRNA-to-PIC binding complex","protein_coding"
"Sobic.009G234700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.009G249800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.009G257600.1","No alias","Sorghum bicolor ","helicase UAP56","protein_coding"
"Sobic.010G073200.1","No alias","Sorghum bicolor ","regulatory GTPase (NOG1) of LSU processome","protein_coding"
"Sobic.010G102600.2","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.010G263900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.010G264000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Solyc01g006180","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT4G10620.1)","protein_coding"
"Solyc01g007140","No alias","Solanum lycopersicum","ARM repeat superfamily protein (AHRD V3.3 *** AT5G06350.2)","protein_coding"
"Solyc01g066690","No alias","Solanum lycopersicum","eukaryotic translation initiation factor 2 gamma subunit (AHRD V3.3 *** AT1G04170.2)","protein_coding"
"Solyc01g087670","No alias","Solanum lycopersicum","Transducin/WD40 repeat protein (AHRD V3.3 *** A0A072UCU5_MEDTR)","protein_coding"
"Solyc01g088570","No alias","Solanum lycopersicum","Acyl carrier protein (AHRD V3.3 *** K4AYP7_SOLLC)","protein_coding"
"Solyc01g090290","No alias","Solanum lycopersicum","COP9 signalosome complex subunit 7 (AHRD V3.3 *** W9QI01_9ROSA)","protein_coding"
"Solyc01g090470","No alias","Solanum lycopersicum","Protein AATF (AHRD V3.3 *** W9SMH5_9ROSA)","protein_coding"
"Solyc01g090670","No alias","Solanum lycopersicum","nucleoporin-like protein","protein_coding"
"Solyc01g090750","No alias","Solanum lycopersicum","T-complex protein 1 alpha subunit (AHRD V3.3 *** AT3G20050.1)","protein_coding"
"Solyc01g096800","No alias","Solanum lycopersicum","PETER PAN-like protein (AHRD V3.3 *** AT5G61770.3)","protein_coding"
"Solyc01g096920","No alias","Solanum lycopersicum","Nuclear fragile X mental retardation-interacting protein 1 (AHRD V3.3 *-* A0A1D1YNL7_9ARAE)","protein_coding"
"Solyc01g097640","No alias","Solanum lycopersicum","Ribosome biogenesis protein BMS1 (AHRD V3.3 *** A0A0B2PF71_GLYSO)","protein_coding"
"Solyc01g100570","No alias","Solanum lycopersicum","Nucleolar protein NOP56 (AHRD V3.3 *** A0A061G5W0_THECC)","protein_coding"
"Solyc01g100580","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9RNC6_RICCO)","protein_coding"
"Solyc01g100730","No alias","Solanum lycopersicum","rhodanese-like domain protein (AHRD V3.3 *** AT1G09280.1)","protein_coding"
"Solyc01g104510","No alias","Solanum lycopersicum","WD-40 repeat protein","protein_coding"
"Solyc01g104680","No alias","Solanum lycopersicum","Ran protein/TC4 protein ran2a","protein_coding"
"Solyc01g107580","No alias","Solanum lycopersicum","Pseudouridine synthase family protein (AHRD V3.3 *** AT3G19440.1)","protein_coding"
"Solyc01g109990","No alias","Solanum lycopersicum","RNA-binding family protein, putative (AHRD V3.3 *** A0A061DYQ5_THECC)","protein_coding"
"Solyc02g032400","No alias","Solanum lycopersicum","Nuclear pore complex protein Nup214 (AHRD V3.3 *-* W6JJ76_NICBE)","protein_coding"
"Solyc02g038750","No alias","Solanum lycopersicum","transducin family protein / WD-40 repeat family protein (AHRD V3.3 *** AT2G34260.1)","protein_coding"
"Solyc02g062240","No alias","Solanum lycopersicum","Small nuclear ribonucleoprotein (AHRD V3.3 *** G7LBD3_MEDTR)","protein_coding"
"Solyc02g070100","No alias","Solanum lycopersicum","RNA helicase DEAD7","protein_coding"
"Solyc02g079210","No alias","Solanum lycopersicum","DAG protein (AHRD V3.3 *** B6SJX7_MAIZE)","protein_coding"
"Solyc02g081680","No alias","Solanum lycopersicum","Nucleolar complex protein 2 like (AHRD V3.3 *** A0A0B2RJJ2_GLYSO)","protein_coding"
"Solyc02g092910","No alias","Solanum lycopersicum","Mortality factor 4-like protein 1 (AHRD V3.3 *** A0A0B2QZE4_GLYSO)","protein_coding"
"Solyc03g007170","No alias","Solanum lycopersicum","Peptidyl-prolyl cis-trans isomerase FKBP53 (AHRD V3.3 *** W9QW00_9ROSA)","protein_coding"
"Solyc03g051900","No alias","Solanum lycopersicum","Protein RRP5-like protein (AHRD V3.3 *** W9QKL3_9ROSA)","protein_coding"
"Solyc03g093480","No alias","Solanum lycopersicum","U3 small nucleolar RNA-associated protein 10 and NUC211 domain-containing protein, putative isoform 1 (AHRD V3.3 *** A0A061FZW2_THECC)","protein_coding"
"Solyc03g097160","No alias","Solanum lycopersicum","Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** A0A0K9NPY2_ZOSMR)","protein_coding"
"Solyc03g112530","No alias","Solanum lycopersicum","Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** AT3G49660.1)","protein_coding"
"Solyc03g112820","No alias","Solanum lycopersicum","U3 small nucleolar ribonucleoprotein protein MPP10 (AHRD V3.3 *** K4BKD5_SOLLC)","protein_coding"
"Solyc03g116380","No alias","Solanum lycopersicum","WD repeat-containing protein 43 (AHRD V3.3 *** A0A0B2P182_GLYSO)","protein_coding"
"Solyc03g118910","No alias","Solanum lycopersicum","T-complex protein 1 subunit delta (AHRD V3.3 *** K4BM40_SOLLC)","protein_coding"
"Solyc03g123530","No alias","Solanum lycopersicum","CCAAT/enhancer-binding zeta (AHRD V3.3 *** A0A0B0MUY0_GOSAR)","protein_coding"
"Solyc04g078780","No alias","Solanum lycopersicum","Transducin/WD40 repeat protein (AHRD V3.3 *** A0A072VH71_MEDTR)","protein_coding"
"Solyc04g081580","No alias","Solanum lycopersicum","RNA helicase DEAD15","protein_coding"
"Solyc04g082330","No alias","Solanum lycopersicum","pre-rRNA-processing TSR1-like protein (AHRD V3.3 *** AT1G42440.1)","protein_coding"
"Solyc05g008520","No alias","Solanum lycopersicum","cyclin-D1-binding protein (AHRD V3.3 *** AT1G22970.1)","protein_coding"
"Solyc05g010780","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9HWT8_POPTR)","protein_coding"
"Solyc05g011990","No alias","Solanum lycopersicum","Nucleolar 14 (AHRD V3.3 *** A0A0B0NLB8_GOSAR)","protein_coding"
"Solyc05g013990","No alias","Solanum lycopersicum","T-complex protein 1 (AHRD V3.3 *** B9HTF6_POPTR)","protein_coding"
"Solyc05g050560","No alias","Solanum lycopersicum","Basic helix-loop-helix (BHLH) family transcription factor (AHRD V3.3 *** A0A0K9PZ13_ZOSMR)","protein_coding"
"Solyc05g054630","No alias","Solanum lycopersicum","Elongator complex protein 1 (AHRD V3.3 *** K4C2E0_SOLLC)","protein_coding"
"Solyc06g005140","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing family protein (AHRD V3.3 *** B9H877_POPTR)","protein_coding"
"Solyc06g060150","No alias","Solanum lycopersicum","replication factor C subunit 3 (AHRD V3.3 *** AT1G77470.1)","protein_coding"
"Solyc06g076860","No alias","Solanum lycopersicum","cell division control 6 (AHRD V3.3 *** AT2G29680.2)","protein_coding"
"Solyc07g008330","No alias","Solanum lycopersicum","Nucleolar and coiled-body phosphoprotein 1 (AHRD V3.3 *-* A0A1D1XD59_9ARAE)","protein_coding"
"Solyc07g009350","No alias","Solanum lycopersicum","U3 small nucleolar RNA-associated protein (AHRD V3.3 *** AT1G17690.1)","protein_coding"
"Solyc07g041870","No alias","Solanum lycopersicum","tubulin-tyrosine ligase (AHRD V3.3 *** AT1G77550.1)","protein_coding"
"Solyc07g062440","No alias","Solanum lycopersicum","LOW QUALITY:BnaA05g24630D protein (AHRD V3.3 *** A0A078E8V1_BRANA)","protein_coding"
"Solyc07g066410","No alias","Solanum lycopersicum","Transducin/WD-like repeat-protein (AHRD V3.3 *** G7JUE1_MEDTR)","protein_coding"
"Solyc07g066420","No alias","Solanum lycopersicum","Peptidyl-prolyl cis-trans isomerase-like protein (AHRD V3.3 *** A0A072U025_MEDTR)","protein_coding"
"Solyc08g075850","No alias","Solanum lycopersicum","50S ribosomal protein L24 (AHRD V3.3 *** W9QWA0_9ROSA)","protein_coding"
"Solyc09g009030","No alias","Solanum lycopersicum","Histone deacetylase HDT1 (AHRD V3.3 *** HDT1_SOLCH)","protein_coding"
"Solyc09g011420","No alias","Solanum lycopersicum","Ribosomal protein l7ae (AHRD V3.3 *** A0A0A0LF58_CUCSA)","protein_coding"
"Solyc09g065880","No alias","Solanum lycopersicum","F-box family protein (AHRD V3.3 *** B9GS69_POPTR)","protein_coding"
"Solyc09g073000","No alias","Solanum lycopersicum","Elongation factor Tu (AHRD V3.3 *** K4CUX6_SOLLC)","protein_coding"
"Solyc09g074090","No alias","Solanum lycopersicum","Exosome complex component RRP4 homolog (AHRD V3.3 *** RRP4_ARATH)","protein_coding"
"Solyc09g083080","No alias","Solanum lycopersicum","MAR-binding protein","protein_coding"
"Solyc09g090740","No alias","Solanum lycopersicum","RNA helicase DEAD29","protein_coding"
"Solyc09g091180","No alias","Solanum lycopersicum","Chaperonin CPN60, mitochondrial (AHRD V3.3 *** CH60A_ARATH)","protein_coding"
"Solyc09g092080","No alias","Solanum lycopersicum","Ribosomal protein l7ae (AHRD V3.3 *** A0A0A0LF58_CUCSA)","protein_coding"
"Solyc10g006020","No alias","Solanum lycopersicum","Mitochondrial import inner membrane translocase subunit TIM50 (AHRD V3.3 *** A0A1D1YE49_9ARAE)","protein_coding"
"Solyc10g007550","No alias","Solanum lycopersicum","RNA helicase DEAD31","protein_coding"
"Solyc10g039190","No alias","Solanum lycopersicum","transducin family protein / WD-40 repeat family protein (AHRD V3.3 *** AT3G21540.1)","protein_coding"
"Solyc10g047120","No alias","Solanum lycopersicum","tRNA (Guanine(10)-N2)-methyltransferase (AHRD V3.3 *** A0A0B0N5L8_GOSAR)","protein_coding"
"Solyc10g047300","No alias","Solanum lycopersicum","Translocon at the outer membrane of chloroplasts 64-V isoform 1 (AHRD V3.3 *** A0A061E2D6_THECC)","protein_coding"
"Solyc10g054860","No alias","Solanum lycopersicum","Urb2/Npa2, putative isoform 2 (AHRD V3.3 *** A0A061E0C3_THECC)","protein_coding"
"Solyc10g078540","No alias","Solanum lycopersicum","H/ACA ribonucleoprotein complex subunit 1-like protein 1, putative, expressed (AHRD V3.3 *-* Q2R242_ORYSJ)","protein_coding"
"Solyc10g079430","No alias","Solanum lycopersicum","U3 small nucleolar RNA-associated protein 11 (AHRD V3.3 *** A5B5S2_VITVI)","protein_coding"
"Solyc10g080350","No alias","Solanum lycopersicum","DNA-directed RNA polymerase subunit (AHRD V3.3 *** K4D2S5_SOLLC)","protein_coding"
"Solyc10g081180","No alias","Solanum lycopersicum","RNA-binding protein (AHRD V3.3 *-* Q941H9_TOBAC)","protein_coding"
"Solyc10g081630","No alias","Solanum lycopersicum","F-box protein (AHRD V3.3 *** A0A0B2SFJ8_GLYSO)","protein_coding"
"Solyc10g083600","No alias","Solanum lycopersicum","Brix domain-containing protein (AHRD V3.3 *** H9A0F8_NICBE)","protein_coding"
"Solyc10g084160","No alias","Solanum lycopersicum","Small RNA degrading nuclease (AHRD V3.3 *** A0A072VF22_MEDTR)","protein_coding"
"Solyc11g007700","No alias","Solanum lycopersicum","S-adenosyl-L-methionine-dependent methyltransferase superfamily protein (AHRD V3.3 *** A0A097PS73_SOLLC)","protein_coding"
"Solyc11g018560","No alias","Solanum lycopersicum","50S ribosomal protein L25, putative (AHRD V3.3 *** B9RCJ6_RICCO)","protein_coding"
"Solyc11g018710","No alias","Solanum lycopersicum","LOW QUALITY:DUF688 family protein (AHRD V3.3 *** A0A072VNH4_MEDTR)","protein_coding"
"Solyc11g065880","No alias","Solanum lycopersicum","RNA-binding family protein (AHRD V3.3 *** A0A061FD24_THECC)","protein_coding"
"Solyc12g013880","No alias","Solanum lycopersicum","origin recognition complex subunit 3 (AHRD V3.3 *** AT5G16690.1)","protein_coding"
"Solyc12g014230","No alias","Solanum lycopersicum","DAG protein (AHRD V3.3 *** A0A0K9PW98_ZOSMR)","protein_coding"
"Solyc12g020050","No alias","Solanum lycopersicum","DNA-binding protein DQ117941","protein_coding"
"Solyc12g042700","No alias","Solanum lycopersicum","tyrosine sulfotransferase-like protein (AHRD V3.3 *** AT4G22000.1)","protein_coding"
"Solyc12g056340","No alias","Solanum lycopersicum","RNA helicase DEAD38","protein_coding"
"Sopen03g031900","No alias","Solanum pennellii","Mpp10 protein","protein_coding"