"sequence_id","alias","species","description","type"
"A4A49_15623","No alias","Nicotiana attenuata","dna replication licensing factor mcm2","protein_coding"
"At1g03310","No alias","Arabidopsis thaliana","ISA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WGA8]","protein_coding"
"At1g05910","No alias","Arabidopsis thaliana","ATPase family AAA domain-containing protein At1g05910 [Source:UniProtKB/Swiss-Prot;Acc:F4IAE9]","protein_coding"
"At1g10490","No alias","Arabidopsis thaliana","RNA cytidine acetyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIK4]","protein_coding"
"At1g16970","No alias","Arabidopsis thaliana","KU70 [Source:UniProtKB/TrEMBL;Acc:A0A178WAS1]","protein_coding"
"At1g23190","No alias","Arabidopsis thaliana","Probable phosphoglucomutase, cytoplasmic 1 [Source:UniProtKB/Swiss-Prot;Acc:O49299]","protein_coding"
"At1g26190","No alias","Arabidopsis thaliana","Inorganic pyrophosphatase TTM2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C664]","protein_coding"
"At1g26460","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZD1]","protein_coding"
"At1g43170","No alias","Arabidopsis thaliana","60S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]","protein_coding"
"At1g44895","No alias","Arabidopsis thaliana","Minichromosone maintenance protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8APK6]","protein_coding"
"At1g44900","No alias","Arabidopsis thaliana","DNA replication licensing factor MCM2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPD9]","protein_coding"
"At1g54440","No alias","Arabidopsis thaliana","Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HWX0]","protein_coding"
"At1g57820","No alias","Arabidopsis thaliana","E3 ubiquitin-protein ligase ORTHRUS 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYZ0]","protein_coding"
"At1g64880","No alias","Arabidopsis thaliana","At1g64880 [Source:UniProtKB/TrEMBL;Acc:Q6GKU7]","protein_coding"
"At1g69070","No alias","Arabidopsis thaliana","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPr /.../07276); Has 69842 Blast hits to 35213 proteins in 1572 species: Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink). [Source:TAIR;Acc:AT1G69070]","protein_coding"
"At1g73620","No alias","Arabidopsis thaliana","Pathogenesis-related thaumatin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C9U9]","protein_coding"
"At1g77470","No alias","Arabidopsis thaliana","Replication factor C subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAQ8]","protein_coding"
"At1g77550","No alias","Arabidopsis thaliana","At1g77550 [Source:UniProtKB/TrEMBL;Acc:Q6IDC7]","protein_coding"
"At1g80270","No alias","Arabidopsis thaliana","PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6]","protein_coding"
"At2g01250","No alias","Arabidopsis thaliana","60S ribosomal protein L7-2 [Source:UniProtKB/Swiss-Prot;Acc:P60040]","protein_coding"
"At2g07690","No alias","Arabidopsis thaliana","DNA replication licensing factor MCM5 [Source:UniProtKB/Swiss-Prot;Acc:O80786]","protein_coding"
"At2g16430","No alias","Arabidopsis thaliana","Purple acid phosphatase [Source:UniProtKB/TrEMBL;Acc:A0A178VZQ7]","protein_coding"
"At2g16440","No alias","Arabidopsis thaliana","DNA replication licensing factor MCM4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVF5]","protein_coding"
"At2g18220","No alias","Arabidopsis thaliana","Nucleolar complex protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPV5]","protein_coding"
"At2g19385","No alias","Arabidopsis thaliana","At2g19385 [Source:UniProtKB/TrEMBL;Acc:Q8S8S8]","protein_coding"
"At2g21380","No alias","Arabidopsis thaliana","Kinesin-like protein KIN-7M, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJU0]","protein_coding"
"At2g21790","No alias","Arabidopsis thaliana","Ribonucleoside-diphosphate reductase large subunit [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ20]","protein_coding"
"At2g27150","No alias","Arabidopsis thaliana","Abscisic-aldehyde oxidase [Source:UniProtKB/Swiss-Prot;Acc:Q7G9P4]","protein_coding"
"At2g28470","No alias","Arabidopsis thaliana","Beta-galactosidase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCV4]","protein_coding"
"At2g34640","No alias","Arabidopsis thaliana","Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IHY7]","protein_coding"
"At2g35190","No alias","Arabidopsis thaliana","Novel plant SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q944A9]","protein_coding"
"At2g40360","No alias","Arabidopsis thaliana","Ribosome biogenesis protein BOP1 homolog [Source:UniProtKB/Swiss-Prot;Acc:F4IH25]","protein_coding"
"At2g40430","No alias","Arabidopsis thaliana","CONTAINS InterPro DOMAIN/s: P60-like (InterPro:IPR011687), Tumour suppressor protein Gltscr2 (InterPro:IPR011211); Has 709 Blast hits to 643 proteins in 201 species: Archae - 0; Bacteria - 32; Metazoa - 224; Fungi - 154; Plants - 45; Viruses - 0; Ot /.../karyotes - 254 (source: NCBI BLink). [Source:TAIR;Acc:AT2G40430]","protein_coding"
"At2g41540","No alias","Arabidopsis thaliana","Glycerol-3-phosphate dehydrogenase [NAD(+)] GPDHC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:O22216]","protein_coding"
"At3g01160","No alias","Arabidopsis thaliana","Pre-rRNA-processing ESF1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9MAC6]","protein_coding"
"At3g05470","No alias","Arabidopsis thaliana","Formin-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178VCE3]","protein_coding"
"At3g06530","No alias","Arabidopsis thaliana","ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP28]","protein_coding"
"At3g06980","No alias","Arabidopsis thaliana","DEAD-box ATP-dependent RNA helicase 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUG7]","protein_coding"
"At3g11964","No alias","Arabidopsis thaliana","rRNA biogenesis protein RRP5 [Source:UniProtKB/Swiss-Prot;Acc:F4J8K6]","protein_coding"
"At3g12340","No alias","Arabidopsis thaliana","Peptidyl-prolyl cis-trans isomerase FKBP43 [Source:UniProtKB/Swiss-Prot;Acc:F4J9Q6]","protein_coding"
"At3g13940","No alias","Arabidopsis thaliana","DNA binding / DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q9LVK6]","protein_coding"
"At3g15080","No alias","Arabidopsis thaliana","At3g15080 [Source:UniProtKB/TrEMBL;Acc:Q8LAA0]","protein_coding"
"At3g16780","No alias","Arabidopsis thaliana","60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]","protein_coding"
"At3g16810","No alias","Arabidopsis thaliana","Pumilio homolog 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRZ3]","protein_coding"
"At3g16840","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VJW0]","protein_coding"
"At3g20240","No alias","Arabidopsis thaliana","Probable mitochondrial adenine nucleotide transporter BTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX5]","protein_coding"
"At3g21540","No alias","Arabidopsis thaliana","Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LVF2]","protein_coding"
"At3g25230","No alias","Arabidopsis thaliana","Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:B3H746]","protein_coding"
"At3g26460","No alias","Arabidopsis thaliana","Major latex protein-like [Source:UniProtKB/TrEMBL;Acc:Q9LIM9]","protein_coding"
"At3g48500","No alias","Arabidopsis thaliana","Nucleic acid-binding, OB-fold-like protein [Source:TAIR;Acc:AT3G48500]","protein_coding"
"At3g55510","No alias","Arabidopsis thaliana","Noc2p family [Source:UniProtKB/TrEMBL;Acc:Q0WVH0]","protein_coding"
"At3g57060","No alias","Arabidopsis thaliana","Condensin complex subunit 1 [Source:UniProtKB/TrEMBL;Acc:F4J246]","protein_coding"
"At3g57660","No alias","Arabidopsis thaliana","DNA-directed RNA polymerase I subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVY0]","protein_coding"
"At4g02060","No alias","Arabidopsis thaliana","DNA replication licensing factor MCM7 [Source:UniProtKB/Swiss-Prot;Acc:P43299]","protein_coding"
"At4g03100","No alias","Arabidopsis thaliana","Rho GTPase-activating protein 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JI46]","protein_coding"
"At4g05410","No alias","Arabidopsis thaliana","U3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]","protein_coding"
"At4g10480","No alias","Arabidopsis thaliana","Putative alpha NAC [Source:UniProtKB/TrEMBL;Acc:Q0WWN5]","protein_coding"
"At4g13750","No alias","Arabidopsis thaliana","Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Source:UniProtKB/TrEMBL;Acc:F4JTS8]","protein_coding"
"At4g14770","No alias","Arabidopsis thaliana","Protein tesmin/TSO1-like CXC 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JIF5]","protein_coding"
"At4g34910","No alias","Arabidopsis thaliana","DEAD-box ATP-dependent RNA helicase 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW44]","protein_coding"
"At4g39280","No alias","Arabidopsis thaliana","Phenylalanine--tRNA ligase alpha subunit, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9T034]","protein_coding"
"At5g03340","No alias","Arabidopsis thaliana","Cell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]","protein_coding"
"At5g07320","No alias","Arabidopsis thaliana","Mitochondrial substrate carrier family protein [Source:UniProtKB/TrEMBL;Acc:Q9LY28]","protein_coding"
"At5g08020","No alias","Arabidopsis thaliana","Replication protein A 70 kDa DNA-binding subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9SD82]","protein_coding"
"At5g08130","No alias","Arabidopsis thaliana","basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:TAIR;Acc:AT5G08130]","protein_coding"
"At5g08570","No alias","Arabidopsis thaliana","Pyruvate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UBM6]","protein_coding"
"At5g14050","No alias","Arabidopsis thaliana","U3 small nucleolar RNA-associated protein 18 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9FMU5]","protein_coding"
"At5g15980","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At5g15980, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF1]","protein_coding"
"At5g16750","No alias","Arabidopsis thaliana","Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFE2]","protein_coding"
"At5g17790","No alias","Arabidopsis thaliana","Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]","protein_coding"
"At5g18440","No alias","Arabidopsis thaliana","NUFIP [Source:UniProtKB/TrEMBL;Acc:A0A178UB40]","protein_coding"
"At5g18750","No alias","Arabidopsis thaliana","DNAJ heat shock N-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q3E9D9]","protein_coding"
"At5g22500","No alias","Arabidopsis thaliana","Fatty acyl-CoA reductase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39152]","protein_coding"
"At5g23570","No alias","Arabidopsis thaliana","Protein SUPPRESSOR OF GENE SILENCING 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDX1]","protein_coding"
"At5g27330","No alias","Arabidopsis thaliana","Prefoldin chaperone subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4K498]","protein_coding"
"At5g38720","No alias","Arabidopsis thaliana","unknown protein; Has 13419 Blast hits to 9093 proteins in 698 species: Archae - 38; Bacteria - 1038; Metazoa - 4949; Fungi - 1086; Plants - 485; Viruses - 44; Other Eukaryotes - 5779 (source: NCBI BLink). [Source:TAIR;Acc:AT5G38720]","protein_coding"
"At5g39960","No alias","Arabidopsis thaliana","GTP-binding protein [Source:UniProtKB/TrEMBL;Acc:F4KFX1]","protein_coding"
"At5g46240","No alias","Arabidopsis thaliana","At5g46240 [Source:UniProtKB/TrEMBL;Acc:Q67YG3]","protein_coding"
"At5g46280","No alias","Arabidopsis thaliana","DNA replication licensing factor MCM3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL33]","protein_coding"
"At5g46570","No alias","Arabidopsis thaliana","Serine/threonine-protein kinase BSK2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS26]","protein_coding"
"At5g46740","No alias","Arabidopsis thaliana","Ubiquitin carboxyl-terminal hydrolase 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIQ1]","protein_coding"
"At5g50740","No alias","Arabidopsis thaliana","Heavy metal transport/detoxification superfamily protein [Source:UniProtKB/TrEMBL;Acc:B3H4U8]","protein_coding"
"At5g50840","No alias","Arabidopsis thaliana","CONTAINS InterPro DOMAIN/s: Taxilin (InterPro:IPR019132); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G50840]","protein_coding"
"At5g56500","No alias","Arabidopsis thaliana","Chaperonin 60 subunit beta 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:C0Z361]","protein_coding"
"At5g56710","No alias","Arabidopsis thaliana","60S ribosomal protein L31-3 [Source:UniProtKB/Swiss-Prot;Acc:P51420]","protein_coding"
"At5g60040","No alias","Arabidopsis thaliana","DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F4JXF8]","protein_coding"
"At5g61000","No alias","Arabidopsis thaliana","Replication protein A subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UJ91]","protein_coding"
"At5g61780","No alias","Arabidopsis thaliana","Ribonuclease TUDOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLT0]","protein_coding"
"At5g67100","No alias","Arabidopsis thaliana","DNA polymerase alpha catalytic subunit [Source:UniProtKB/Swiss-Prot;Acc:Q9FHA3]","protein_coding"
"Bradi1g14710","No alias","Brachypodium distachyon","NAD(P)-linked oxidoreductase superfamily protein","protein_coding"
"Bradi1g19080","No alias","Brachypodium distachyon","glutamate synthase 1","protein_coding"
"Bradi1g28729","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi1g60217","No alias","Brachypodium distachyon","Protein of unknown function (DUF300)","protein_coding"
"Bradi1g62175","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi2g03108","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi2g04117","No alias","Brachypodium distachyon","E2F target gene 1","protein_coding"
"Bradi2g18270","No alias","Brachypodium distachyon","transducin family protein / WD-40 repeat family protein","protein_coding"
"Bradi2g19211","No alias","Brachypodium distachyon","ATP-dependent helicase family protein","protein_coding"
"Bradi2g21080","No alias","Brachypodium distachyon","structural maintenance of chromosome 3","protein_coding"
"Bradi2g22360","No alias","Brachypodium distachyon","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Bradi2g40600","No alias","Brachypodium distachyon","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Bradi2g44160","No alias","Brachypodium distachyon","cytochrome P450, family 72, subfamily A, polypeptide 15","protein_coding"
"Bradi2g57730","No alias","Brachypodium distachyon","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Bradi3g00681","No alias","Brachypodium distachyon","Ubiquitin-like superfamily protein","protein_coding"
"Bradi3g08070","No alias","Brachypodium distachyon","Leucine-rich repeat protein kinase family protein","protein_coding"
"Bradi3g15027","No alias","Brachypodium distachyon","starch synthase 3","protein_coding"
"Bradi3g15310","No alias","Brachypodium distachyon","glucose-6-phosphate/phosphate translocator 2","protein_coding"
"Bradi3g34191","No alias","Brachypodium distachyon","F-box/RNI-like superfamily protein","protein_coding"
"Bradi3g34355","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi3g39467","No alias","Brachypodium distachyon","Sec14p-like phosphatidylinositol transfer family protein","protein_coding"
"Bradi3g41520","No alias","Brachypodium distachyon","ARF GTPase-activating protein","protein_coding"
"Bradi3g41630","No alias","Brachypodium distachyon","retinoblastoma-related 1","protein_coding"
"Bradi3g47417","No alias","Brachypodium distachyon","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"Bradi3g54190","No alias","Brachypodium distachyon","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Bradi3g59795","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi4g00883","No alias","Brachypodium distachyon","S-domain-2 5","protein_coding"
"Bradi4g04730","No alias","Brachypodium distachyon","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Bradi4g05040","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi4g13356","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi4g19207","No alias","Brachypodium distachyon","minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Bradi4g37327","No alias","Brachypodium distachyon","NAC domain containing protein 57","protein_coding"
"Bradi5g14800","No alias","Brachypodium distachyon","Spc97 / Spc98 family of spindle pole body (SBP) component","protein_coding"
"Bradi5g19741","No alias","Brachypodium distachyon","DNA replication helicase, putative","protein_coding"
"Brara.A00374.1","No alias","Brassica rapa","subunit gamma of cargo adaptor F-subcomplex","protein_coding"
"Brara.A00392.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A00518.1","No alias","Brassica rapa","nascent RNA chaperone *(LA)","protein_coding"
"Brara.A00988.1","No alias","Brassica rapa","A-class RAB GTPase","protein_coding"
"Brara.A00999.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A01274.1","No alias","Brassica rapa","component *(KAE1) of tRNA N6-threonylcarbamoylation KEOPS/EKC complex","protein_coding"
"Brara.A01917.1","No alias","Brassica rapa","RopGEF guanine nucleotide exchange factor *(SPIKE)","protein_coding"
"Brara.A01990.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A02618.1","No alias","Brassica rapa","component Tic22 of inner envelope TIC translocation system","protein_coding"
"Brara.A02836.1","No alias","Brassica rapa","subunit alpha of CCT chaperonin folding complex *(CCT1)","protein_coding"
"Brara.A03875.1","No alias","Brassica rapa","component *(mS80) of small mitoribosomal-subunit proteome","protein_coding"
"Brara.B01714.1","No alias","Brassica rapa","primase component *(POLA3) of DNA polymerase alpha complex","protein_coding"
"Brara.B01734.1","No alias","Brassica rapa","replication fork tethering component *(POLA2) of DNA polymerase alpha complex","protein_coding"
"Brara.B02476.1","No alias","Brassica rapa","alpha-type-6 component *(PAF) of 26S proteasome & EC_3.4 hydrolase acting on peptide bond (peptidase)","protein_coding"
"Brara.B02513.1","No alias","Brassica rapa","component *(GCP5) of gamma-Tubulin ring complex","protein_coding"
"Brara.B02725.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.B02957.1","No alias","Brassica rapa","subunit delta_ of ATP synthase peripheral MF1 subcomplex","protein_coding"
"Brara.B03550.1","No alias","Brassica rapa","histone *(H2A)","protein_coding"
"Brara.B03590.1","No alias","Brassica rapa","mRNA-translocation factor *(eEF2))","protein_coding"
"Brara.B03596.1","No alias","Brassica rapa","uridylate kinase *(UMK) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Brara.B03607.1","No alias","Brassica rapa","glutamate-tRNA ligase","protein_coding"
"Brara.B03718.1","No alias","Brassica rapa","DNA bending architectural protein *(HMG-B)","protein_coding"
"Brara.B03983.1","No alias","Brassica rapa","Kinesin-14-type motor protein","protein_coding"
"Brara.C00334.1","No alias","Brassica rapa","core component *(NHP2) of H/ACA snoRNP RNA pseudouridylation complex","protein_coding"
"Brara.C00601.1","No alias","Brassica rapa","solute transporter *(MTCC)","protein_coding"
"Brara.C00716.1","No alias","Brassica rapa","component *(COG1) of COG (Conserved-Oligomeric Golgi) complex","protein_coding"
"Brara.C00912.1","No alias","Brassica rapa","EC_1.6 oxidoreductase acting on NADH or NADPH","protein_coding"
"Brara.C01220.1","No alias","Brassica rapa","histone *(H4)","protein_coding"
"Brara.C01467.1","No alias","Brassica rapa","AHL clade-B transcription factor","protein_coding"
"Brara.C02125.1","No alias","Brassica rapa","NAD-dependent glycerol-3-phosphate dehydrogenase & NAD-dependent glycerol-3-phosphate dehydrogenase","protein_coding"
"Brara.C02292.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.C02829.1","No alias","Brassica rapa","component *(MCM7) of MCM replicative DNA helicase complex","protein_coding"
"Brara.C02900.1","No alias","Brassica rapa","DDX6-type mRNA helicase *(RH12/RH8)","protein_coding"
"Brara.C02927.1","No alias","Brassica rapa","component *(uL13m) of large mitoribosomal-subunit proteome","protein_coding"
"Brara.C03202.1","No alias","Brassica rapa","EC_3.2 glycosylase","protein_coding"
"Brara.C03424.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.C04036.1","No alias","Brassica rapa","scaffold nucleoporin of nuclear pore complex *(NUP133)","protein_coding"
"Brara.C04051.1","No alias","Brassica rapa","component *(MCM5) of MCM replicative DNA helicase complex","protein_coding"
"Brara.C04053.1","No alias","Brassica rapa","triterpenoid synthase & EC_5.4 intramolecular transferase & cycloartenol synthase","protein_coding"
"Brara.C04091.1","No alias","Brassica rapa","component *(MCM9) of MCM8-9 cell cycle auxiliary complex","protein_coding"
"Brara.C04147.1","No alias","Brassica rapa","component *(MCM4) of MCM replicative DNA helicase complex","protein_coding"
"Brara.D00015.1","No alias","Brassica rapa","EC_2.1 transferase transferring one-carbon group & homocysteine S-methyltransferase","protein_coding"
"Brara.D00144.1","No alias","Brassica rapa","cofactor of post-CCT Tubulin folding pathway *(TFC-D)","protein_coding"
"Brara.D00516.1","No alias","Brassica rapa","histone *(H2B)","protein_coding"
"Brara.D00562.1","No alias","Brassica rapa","fructose-bisphosphate aldolase *(FBA) & cytosolic fructose-bisphosphate aldolase & EC_4.1 carbon-carbon lyase","protein_coding"
"Brara.D00843.1","No alias","Brassica rapa","component *(CAP-G) of condensin I complex","protein_coding"
"Brara.D00846.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.D01212.1","No alias","Brassica rapa","primase component *(POLA4) of DNA polymerase alpha complex","protein_coding"
"Brara.D01721.1","No alias","Brassica rapa","histone *(H4)","protein_coding"
"Brara.D01749.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.D02732.1","No alias","Brassica rapa","EC_2.5 transferase transferring alkyl or aryl group, other than methyl group & 5-enolpyruvyl-shikimate 3-phosphate (EPSP) synthase","protein_coding"
"Brara.D02735.1","No alias","Brassica rapa","LRR-IV protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Brara.E00273.1","No alias","Brassica rapa","regulatory protein *(OSD1/UVI4) of ubiquitination","protein_coding"
"Brara.E00328.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.E01218.1","No alias","Brassica rapa","aminoacyl-tRNA binding factor *(eEF1A))","protein_coding"
"Brara.E01246.1","No alias","Brassica rapa","helicase auxiliary factor *(CDT1)","protein_coding"
"Brara.E01344.1","No alias","Brassica rapa","sliding clamp protein *(PCNA)","protein_coding"
"Brara.E01685.1","No alias","Brassica rapa","alpha-Tubulin component *(TUA) of alpha-beta-Tubulin heterodimer","protein_coding"
"Brara.E01818.1","No alias","Brassica rapa","protein disulfide isomerase *(PDI-B)","protein_coding"
"Brara.E01946.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.E02197.1","No alias","Brassica rapa","subunit alpha of CCT chaperonin folding complex *(CCT1)","protein_coding"
"Brara.E02389.1","No alias","Brassica rapa","subunit delta *(CCT4) of CCT chaperonin folding complex","protein_coding"
"Brara.E02452.1","No alias","Brassica rapa","nucleocytoplasmic transport karyopherin *(PLANTKAP)","protein_coding"
"Brara.E02460.1","No alias","Brassica rapa","dihydrolipoamide dehydrogenase component of 2-oxoglutarate dehydrogenase complex & dihydrolipoamide dehydrogenase component of branched-chain alpha-keto acid dehydrogenase complex & dihydrolipoyl dehydrogenase component *(L-protein) of glycine cleavage system & dihydrolipoamide dehydrogenase component of mitochondrial pyruvate dehydrogenase complex & EC_1.8 oxidoreductase acting on sulfur group of donor","protein_coding"
"Brara.E02594.1","No alias","Brassica rapa","assembly factor involved in ITS1 rRNA removal *(BRIX1)","protein_coding"
"Brara.E02852.1","No alias","Brassica rapa","subunit alpha of NAC ribosome-associated chaperone complex","protein_coding"
"Brara.E03260.1","No alias","Brassica rapa","component *(eL29) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Brara.E03571.1","No alias","Brassica rapa","component *(eS7) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Brara.F00331.1","No alias","Brassica rapa","alpha-Tubulin component *(TUA) of alpha-beta-Tubulin heterodimer","protein_coding"
"Brara.F00511.1","No alias","Brassica rapa","catalytic component *(POL2/POLE1) of DNA polymerase epsilon complex","protein_coding"
"Brara.F00763.1","No alias","Brassica rapa","DNA chromomethylase *(CMT)","protein_coding"
"Brara.F01064.1","No alias","Brassica rapa","RNA editing factor *(POCO)","protein_coding"
"Brara.F01497.1","No alias","Brassica rapa","EC_2.7 transferase transferring phosphorus-containing group & pyrophosphate-dependent phosphofructokinase","protein_coding"
"Brara.F01757.1","No alias","Brassica rapa","component *(CAP-E2/SMC2) of condensin I/II complex","protein_coding"
"Brara.F01784.1","No alias","Brassica rapa","deoxyuridine triphosphatase *(DUT) & EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Brara.F01786.1","No alias","Brassica rapa","beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer","protein_coding"
"Brara.F01818.1","No alias","Brassica rapa","component *(RRP46) of exosome EXO9 core complex","protein_coding"
"Brara.F01828.1","No alias","Brassica rapa","histone *(H4)","protein_coding"
"Brara.F02241.1","No alias","Brassica rapa","chromatin architectural modulator *(DEK)","protein_coding"
"Brara.F02479.1","No alias","Brassica rapa","P1B-type heavy metal cation-transporting ATPase *(HMA)","protein_coding"
"Brara.F02517.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F03113.1","No alias","Brassica rapa","component *(CAP-C/SMC4) of condensin I/II complex","protein_coding"
"Brara.F03629.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F03728.1","No alias","Brassica rapa","component *(MCM6) of MCM replicative DNA helicase complex","protein_coding"
"Brara.G00292.1","No alias","Brassica rapa","regulatory component of isocitrate dehydrogenase heterodimer & EC_1.1 oxidoreductase acting on CH-OH group of donor","protein_coding"
"Brara.G00336.1","No alias","Brassica rapa","subunit gamma of cargo adaptor F-subcomplex","protein_coding"
"Brara.G00463.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.G00706.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.G00919.1","No alias","Brassica rapa","poly-P/G elongation factor *(eEF5/eIF5A))","protein_coding"
"Brara.G01189.1","No alias","Brassica rapa","LRR-III protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Brara.G01198.1","No alias","Brassica rapa","catalytic component *(POLA1) of DNA polymerase alpha complex","protein_coding"
"Brara.G01215.1","No alias","Brassica rapa","component *(bL25m) of large mitoribosomal-subunit proteome","protein_coding"
"Brara.G01363.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.G01998.1","No alias","Brassica rapa","scaffold component *(Sec31) of coat protein complex","protein_coding"
"Brara.G02127.1","No alias","Brassica rapa","activating factor *(eIF5) of eIF2-GTP hydrolysis","protein_coding"
"Brara.G02599.1","No alias","Brassica rapa","component *(CAF1a/FAS1) of CAF1 histone chaperone complex","protein_coding"
"Brara.G02696.1","No alias","Brassica rapa","component *(DDR) of ISWI chromatin remodeling complex","protein_coding"
"Brara.G03032.1","No alias","Brassica rapa","UDP-glucose glycoprotein glucosyltransferase *(UGGT)","protein_coding"
"Brara.G03137.1","No alias","Brassica rapa","tRNA export karyopherin *(XPOT) & nucleocytoplasmic export karyopherin *(XPO3/XPOT)","protein_coding"
"Brara.G03422.1","No alias","Brassica rapa","substrate adaptor *(DWA2) of CUL4-DDB1 E3 ubiquitin ligase complex","protein_coding"
"Brara.G03551.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.H00452.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.H01488.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.H01794.1","No alias","Brassica rapa","subunit alpha of coat protein complex","protein_coding"
"Brara.H01948.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.H02404.1","No alias","Brassica rapa","histone chaperone *(NRP)","protein_coding"
"Brara.H02738.1","No alias","Brassica rapa","helicase component *(RecQ4A) of RTR Holliday junction dissolution complex","protein_coding"
"Brara.H02832.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.H02935.1","No alias","Brassica rapa","Ran-activation accessory protein *(RanBP1)","protein_coding"
"Brara.I00125.1","No alias","Brassica rapa","component *(MCM7) of MCM replicative DNA helicase complex","protein_coding"
"Brara.I00180.1","No alias","Brassica rapa","regulatory protein *(MAS2) of rDNA transcription","protein_coding"
"Brara.I00505.1","No alias","Brassica rapa","uridylate kinase *(UMK) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Brara.I00644.1","No alias","Brassica rapa","component *(RPA1) of single-stranded-DNA binding RPA complex & component *(RPA1) of RPA presynaptic filament assembly factor complex","protein_coding"
"Brara.I00886.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I01114.1","No alias","Brassica rapa","protease *(SBT2)","protein_coding"
"Brara.I01274.1","No alias","Brassica rapa","ER-tubule curvature-inducing protein *(Reticulon)","protein_coding"
"Brara.I01380.1","No alias","Brassica rapa","SSU processome assembly factor *(IMP4)","protein_coding"
"Brara.I01908.1","No alias","Brassica rapa","component *(uL5) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Brara.I02248.1","No alias","Brassica rapa","component *(ORC1) of origin recognition complex","protein_coding"
"Brara.I02406.1","No alias","Brassica rapa","plastidial ascorbate peroxidase *(APX) & EC_1.11 oxidoreductase acting on peroxide as acceptor","protein_coding"
"Brara.I02417.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I02669.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I03043.1","No alias","Brassica rapa","subunit epsilon *(CCT5) of CCT chaperonin folding complex","protein_coding"
"Brara.I03320.1","No alias","Brassica rapa","14-3-3 phosphoprotein-binding protein *(GRF)","protein_coding"
"Brara.I03565.1","No alias","Brassica rapa","component *(uS11) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Brara.I03590.1","No alias","Brassica rapa","component *(GRF) of GRF-GIF transcriptional complex","protein_coding"
"Brara.I03592.1","No alias","Brassica rapa","fructose-bisphosphate aldolase *(FBA) & cytosolic fructose-bisphosphate aldolase & EC_4.1 carbon-carbon lyase","protein_coding"
"Brara.I03781.1","No alias","Brassica rapa","component *(uL23) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Brara.I04310.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I04553.1","No alias","Brassica rapa","DNA methyltransferase *(MET)","protein_coding"
"Brara.I05035.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I05365.1","No alias","Brassica rapa","sliding clamp protein *(PCNA)","protein_coding"
"Brara.J00285.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.J00584.1","No alias","Brassica rapa","component *(MCM2) of MCM replicative DNA helicase complex","protein_coding"
"Brara.J01402.1","No alias","Brassica rapa","ARF-type transcription factor","protein_coding"
"Brara.J01571.1","No alias","Brassica rapa","glutaredoxin","protein_coding"
"Brara.J01652.1","No alias","Brassica rapa","Ran-activating protein of nucleocytoplasmic transport","protein_coding"
"Brara.J02124.1","No alias","Brassica rapa","5-formyl-THF cycloligase & EC_6.3 ligase forming carbon-nitrogen bond","protein_coding"
"Brara.J02319.1","No alias","Brassica rapa","A-class RAB GTPase","protein_coding"
"Brara.J02341.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.K00712.1","No alias","Brassica rapa","subunit G of V-type ATPase peripheral V1 subcomplex","protein_coding"
"Brara.K00720.1","No alias","Brassica rapa","mannan O-acetyltransferase *(MOAT)","protein_coding"
"Brara.K01651.1","No alias","Brassica rapa","subunit beta of cargo adaptor F-subcomplex","protein_coding"
"Brara.K01823.1","No alias","Brassica rapa","component *(HAP6) of oligosaccharyl transferase (OST) complex","protein_coding"
"Cre01.g003463","No alias","Chlamydomonas reinhardtii","MUTS homolog 2","protein_coding"
"Cre01.g012100","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre01.g015250","No alias","Chlamydomonas reinhardtii","DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases","protein_coding"
"Cre01.g017100","No alias","Chlamydomonas reinhardtii","Esterase/lipase/thioesterase family protein","protein_coding"
"Cre01.g019150","No alias","Chlamydomonas reinhardtii","GAMMA-TUBULIN COMPLEX PROTEIN 4","protein_coding"
"Cre01.g022550","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre01.g029100","No alias","Chlamydomonas reinhardtii","PSF2","protein_coding"
"Cre01.g034750","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre01.g055436","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre02.g077024","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre02.g095050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre02.g095135","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre02.g095294","No alias","Chlamydomonas reinhardtii","Zinc finger (C3HC4-type RING finger) family protein","protein_coding"
"Cre02.g100000","No alias","Chlamydomonas reinhardtii","Replication protein A, subunit RPA32","protein_coding"
"Cre02.g103350","No alias","Chlamydomonas reinhardtii","fatty acid amide hydrolase","protein_coding"
"Cre02.g104950","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre02.g108000","No alias","Chlamydomonas reinhardtii","Protein kinase superfamily protein","protein_coding"
"Cre02.g108150","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre02.g118600","No alias","Chlamydomonas reinhardtii","homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1","protein_coding"
"Cre02.g118900","No alias","Chlamydomonas reinhardtii","Metal-dependent protein hydrolase","protein_coding"
"Cre02.g142186","No alias","Chlamydomonas reinhardtii","Tubulin/FtsZ family protein","protein_coding"
"Cre03.g145687","No alias","Chlamydomonas reinhardtii","5\'-3\' exonuclease family protein","protein_coding"
"Cre03.g163850","No alias","Chlamydomonas reinhardtii","Zinc finger (C3HC4-type RING finger) family protein","protein_coding"
"Cre03.g178650","No alias","Chlamydomonas reinhardtii","minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Cre03.g180050","No alias","Chlamydomonas reinhardtii","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"Cre03.g180350","No alias","Chlamydomonas reinhardtii","cyclin-dependent kinase-subunit 1","protein_coding"
"Cre03.g191100","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre03.g199400","No alias","Chlamydomonas reinhardtii","origin recognition complex second largest subunit 2","protein_coding"
"Cre04.g211700","No alias","Chlamydomonas reinhardtii","ARM repeat protein interacting with  ABF2","protein_coding"
"Cre04.g213050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre04.g214350","No alias","Chlamydomonas reinhardtii","DNA-directed DNA polymerases","protein_coding"
"Cre04.g233102","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre05.g232751","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre05.g233350","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre05.g235750","No alias","Chlamydomonas reinhardtii","MUTS homolog 6","protein_coding"
"Cre05.g239800","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre05.g243900","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre06.g275200","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre06.g278146","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre06.g281750","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre06.g285650","No alias","Chlamydomonas reinhardtii","origin recognition complex protein 6","protein_coding"
"Cre06.g288100","No alias","Chlamydomonas reinhardtii","mRNAadenosine methylase","protein_coding"
"Cre06.g295700","No alias","Chlamydomonas reinhardtii","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Cre07.g312350","No alias","Chlamydomonas reinhardtii","DNA primases;DNA primases","protein_coding"
"Cre07.g316850","No alias","Chlamydomonas reinhardtii","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Cre07.g323300","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre07.g325716","No alias","Chlamydomonas reinhardtii","DNA ligase 1","protein_coding"
"Cre07.g338000","No alias","Chlamydomonas reinhardtii","minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Cre07.g350450","No alias","Chlamydomonas reinhardtii","RING/U-box superfamily protein","protein_coding"
"Cre07.g355200","No alias","Chlamydomonas reinhardtii","origin recognition complex protein 5","protein_coding"
"Cre08.g358537","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre08.g362450","No alias","Chlamydomonas reinhardtii","alpha-amylase-like 3","protein_coding"
"Cre08.g376350","No alias","Chlamydomonas reinhardtii","ASF1 like histone chaperone","protein_coding"
"Cre08.g381000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre09.g390150","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre09.g393600","No alias","Chlamydomonas reinhardtii","DNA replication protein-related","protein_coding"
"Cre09.g394658","No alias","Chlamydomonas reinhardtii","NAD(P)-linked oxidoreductase superfamily protein","protein_coding"
"Cre09.g409000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre09.g409850","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre09.g412400","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre10.g440200","No alias","Chlamydomonas reinhardtii","structural maintenance of chromosomes 5","protein_coding"
"Cre10.g441250","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre10.g441700","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre10.g448600","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre10.g450200","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre10.g452300","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre10.g455850","No alias","Chlamydomonas reinhardtii","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Cre11.g467637","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre11.g481082","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre11.g482700","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre11.g483351","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g490150","No alias","Chlamydomonas reinhardtii","RECQ helicase SIM","protein_coding"
"Cre12.g490550","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g497650","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g515850","No alias","Chlamydomonas reinhardtii","proliferating cellular nuclear antigen 1","protein_coding"
"Cre12.g525500","No alias","Chlamydomonas reinhardtii","Spc97 / Spc98 family of spindle pole body (SBP) component","protein_coding"
"Cre12.g542400","No alias","Chlamydomonas reinhardtii","damaged DNA binding;DNA-directed DNA polymerases","protein_coding"
"Cre14.g608900","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre14.g620050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre14.g621250","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre16.g651000","No alias","Chlamydomonas reinhardtii","Replication factor-A protein 1-related","protein_coding"
"Cre16.g658600","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre16.g667850","No alias","Chlamydomonas reinhardtii","DUTP-PYROPHOSPHATASE-LIKE 1","protein_coding"
"Cre16.g667900","No alias","Chlamydomonas reinhardtii","AINTEGUMENTA-like 5","protein_coding"
"Cre16.g674152","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre16.g679950","No alias","Chlamydomonas reinhardtii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Cre16.g684155","No alias","Chlamydomonas reinhardtii","zinc ion binding","protein_coding"
"Cre16.g692750","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre16.g694800","No alias","Chlamydomonas reinhardtii","Arabidopsis thaliana protein of unknown function (DUF821)","protein_coding"
"Cre17.g701350","No alias","Chlamydomonas reinhardtii","Polynucleotidyl transferase, ribonuclease H-like superfamily protein","protein_coding"
"Cre17.g712450","No alias","Chlamydomonas reinhardtii","Domain of unknown function (DUF1767)","protein_coding"
"Cre17.g715150","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre17.g718850","No alias","Chlamydomonas reinhardtii","replication protein A 1A","protein_coding"
"Cre17.g726500","No alias","Chlamydomonas reinhardtii","origin recognition complex subunit 4","protein_coding"
"Cre17.g732566","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre17.g746347","No alias","Chlamydomonas reinhardtii","uracil dna glycosylase","protein_coding"
"Cre19.g750897","No alias","Chlamydomonas reinhardtii","Cytidine/deoxycytidylate deaminase family protein","protein_coding"
"evm.model.contig_2042.4","No alias","Porphyridium purpureum","(at1g44900 : 727.0) Encodes MCM2 (MINICHROMOSOME MAINTENANCE 2), a protein essential to embryo development. Overexpression results in altered root meristem function.; MINICHROMOSOME MAINTENANCE 2 (MCM2); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: nuclear chromatin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 2 (InterPro:IPR008045), MCM protein 2, N-terminal (InterPro:IPR021092); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1). & (q43704|mcm3_maize : 303.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1454.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2048.10","No alias","Porphyridium purpureum","(at3g23580 : 461.0) Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes (RNR2A). Functionally redundant with the ribonucleotide reductase TSO2. mRNA was shown to specifically accumulate during the S-phase  of the cell cycle in synchronized tobacco BY2 cells. Critical for cell cycle progression, DNA damage repair and plant development.; ribonucleotide reductase 2A (RNR2A); CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ribonucleotide reductase (InterPro:IPR000358), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: Ferritin/ribonucleotide reductase-like family protein (TAIR:AT3G27060.1); Has 9602 Blast hits to 9597 proteins in 2376 species: Archae - 34; Bacteria - 4358; Metazoa - 261; Fungi - 240; Plants - 185; Viruses - 729; Other Eukaryotes - 3795 (source: NCBI BLink). & (p49730|rir2_tobac : 453.0) Ribonucleoside-diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide reductase small subunit) (Ribonucleoside-diphosphate reductase R2 subunit) - Nicotiana tabacum (Common tobacco) & (reliability: 922.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2073.5","No alias","Porphyridium purpureum","(p37832|tbb7_orysa : 682.0) Tubulin beta-7 chain (Beta-7 tubulin) (pTUB22) - Oryza sativa (Rice) & (at5g12250 : 681.0) Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment.; beta-6 tubulin (TUB6); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, response to salt stress, response to cold; LOCATED IN: microtubule cytoskeleton, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 3 (TAIR:AT5G62700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1362.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2084.13","No alias","Porphyridium purpureum","(o48653|dpola_orysa : 558.0) DNA polymerase alpha catalytic subunit (EC 2.7.7.7) - Oryza sativa (Rice) & (at5g67100 : 531.0) Encodes the putative catalytic subunit of the DNA polymerase alpha.  Interacts with genes involved in chromatin-mediated cellular memory. ICU2 genetically interacts with TERMINAL FLOWER2, the ortholog of HETEROCHROMATIN PROTEIN1 of animals and yeasts, and with the Polycomb group (PcG) gene CURLY LEAF. A number of regulatory genes were derepressed in the icu2-1 mutant, including genes associated with flowering time, floral meristem, and floral organ identity. Mutant has curled, involute leaves and causes early flowering.; INCURVATA2 (ICU2); FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: negative regulation of flower development, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134), Zinc finger, DNA-directed DNA polymerase, family B, alpha (InterPro:IPR015088), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B,  pol2 (InterPro:IPR004578); BEST Arabidopsis thaliana protein match is: DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (TAIR:AT5G63960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1062.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2088.4","No alias","Porphyridium purpureum","(at4g31790 : 296.0) Tetrapyrrole (Corrin/Porphyrin) Methylases; FUNCTIONS IN: methyltransferase activity, diphthine synthase activity; INVOLVED IN: peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diphthine synthase (InterPro:IPR004551), Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 592.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2100.8","No alias","Porphyridium purpureum","(at5g22110 : 178.0) Encodes a protein with similarity to DNA polymerase epsilon subunit B an essential gene that is required for DNA replication. Homozygous mutants are embryo lethal. Expressed in meristematic , rapidly dividing regions.; DNA polymerase epsilon subunit B2 (DPB2); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding; INVOLVED IN: DNA replication, DNA-dependent DNA replication; LOCATED IN: epsilon DNA polymerase complex, nucleus; EXPRESSED IN: embryo, male gametophyte, apical meristem, female gametophyte; CONTAINS InterPro DOMAIN/s: DNA polymerase epsilon, subunit B (InterPro:IPR016266), DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 412 Blast hits to 394 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 144; Plants - 62; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink). & (reliability: 356.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2104.15","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2114.1","No alias","Porphyridium purpureum","(at3g25580 : 111.0) Thioredoxin superfamily protein; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin domain-containing protein 9 homolog (TAIR:AT2G18990.1); Has 1084 Blast hits to 1084 proteins in 275 species: Archae - 18; Bacteria - 74; Metazoa - 392; Fungi - 176; Plants - 221; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink). & (reliability: 222.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2121.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2126.13","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2126.7","No alias","Porphyridium purpureum","(at5g12470 : 136.0) Protein of unknown function (DUF3411); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF399 and DUF3411) (TAIR:AT2G40400.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 260.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2146.14","No alias","Porphyridium purpureum","(at1g19880 : 171.0) Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1); Has 17859 Blast hits to 6314 proteins in 497 species: Archae - 78; Bacteria - 2347; Metazoa - 6181; Fungi - 1100; Plants - 2708; Viruses - 16; Other Eukaryotes - 5429 (source: NCBI BLink). & (reliability: 342.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2149.20","No alias","Porphyridium purpureum","(at5g46280 : 571.0) MINICHROMOSOME MAINTENANCE 3 (MCM3); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 3 (InterPro:IPR008046); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT4G02060.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q43704|mcm3_maize : 491.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1142.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2287.6","No alias","Porphyridium purpureum","(at2g27170 : 345.0) Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment.; TITAN7 (TTN7); FUNCTIONS IN: ATP binding; INVOLVED IN: sister chromatid cohesion, chromosome segregation; LOCATED IN: cohesin complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 2 (TAIR:AT5G62410.1); Has 158776 Blast hits to 77347 proteins in 3496 species: Archae - 2059; Bacteria - 28403; Metazoa - 67946; Fungi - 11949; Plants - 6773; Viruses - 706; Other Eukaryotes - 40940 (source: NCBI BLink). & (reliability: 690.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2305.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2306.4","No alias","Porphyridium purpureum","(at3g54630 : 120.0) CONTAINS InterPro DOMAIN/s: Kinetochore protein Ndc80 (InterPro:IPR005550); Has 24780 Blast hits to 15608 proteins in 1321 species: Archae - 545; Bacteria - 2969; Metazoa - 12597; Fungi - 2181; Plants - 1581; Viruses - 39; Other Eukaryotes - 4868 (source: NCBI BLink). & (reliability: 240.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2348.7","No alias","Porphyridium purpureum","(at3g12530 : 99.4) PSF2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GINS complex (InterPro:IPR021151), GINS complex, subunit Psf2 (InterPro:IPR007257), GINS complex, subunit Psf2, subgroup (InterPro:IPR016906); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 198.8) &  (original description: no original description)","protein_coding"
"evm.model.contig_2349.10","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2349.8","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2452.2","No alias","Porphyridium purpureum","(at1g20930 : 332.0) Cyclin-dependent kinase, expressed in flowers and suspension cell culture, expression peaks during M phase in synchronized cultures. Required for proper organization of the shoot apical meristem and for hormone signaling. Expressed in the shoot apical meristem. Involved in regulation of the G2/M transition of the mitotic cell cycle.; cyclin-dependent kinase B2;2 (CDKB2;2); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase B2;1 (TAIR:AT1G76540.1); Has 109034 Blast hits to 107606 proteins in 3051 species: Archae - 93; Bacteria - 11427; Metazoa - 41458; Fungi - 12141; Plants - 24398; Viruses - 437; Other Eukaryotes - 19080 (source: NCBI BLink). & (q38774|cdc2c_antma : 326.0) Cell division control protein 2 homolog C (EC 2.7.11.22) (EC 2.7.11.23) - Antirrhinum majus (Garden snapdragon) & (reliability: 664.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3392.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3392.8","No alias","Porphyridium purpureum","(at2g21060 : 96.3) glycine-rich protein (AtGRP2b); glycine-rich protein 2B (GRP2B); FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Cold-shock conserved site (InterPro:IPR019844), Zinc finger, CCHC retroviral-type (InterPro:IPR013084), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Cold shock protein (InterPro:IPR011129), Zinc finger, CCHC-type (InterPro:IPR001878), Cold-shock protein, DNA-binding (InterPro:IPR002059); BEST Arabidopsis thaliana protein match is: glycine rich protein 2 (TAIR:AT4G38680.1); Has 124576 Blast hits to 52040 proteins in 3306 species: Archae - 178; Bacteria - 46955; Metazoa - 35565; Fungi - 6939; Plants - 11254; Viruses - 1676; Other Eukaryotes - 22009 (source: NCBI BLink). & (p27484|grp2_nicsy : 92.8) Glycine-rich protein 2 - Nicotiana sylvestris (Wood tobacco) & (reliability: 185.6) &  (original description: no original description)","protein_coding"
"evm.model.contig_3407.6","No alias","Porphyridium purpureum","(at5g07590 : 177.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 672 Blast hits to 646 proteins in 166 species: Archae - 0; Bacteria - 97; Metazoa - 271; Fungi - 156; Plants - 85; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink). & (reliability: 354.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3416.15","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3416.16","No alias","Porphyridium purpureum","(at3g24515 : 142.0) ubiquitin-conjugating enzyme 37 (UBC37); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 11 (TAIR:AT3G08690.2); Has 10163 Blast hits to 10152 proteins in 398 species: Archae - 0; Bacteria - 2; Metazoa - 4605; Fungi - 2137; Plants - 1818; Viruses - 27; Other Eukaryotes - 1574 (source: NCBI BLink). & (p25866|ubc2_wheat : 90.5) Ubiquitin-conjugating enzyme E2-17 kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) - Triticum aestivum (Wheat) & (reliability: 284.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3440.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3440.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3456.8","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3463.4","No alias","Porphyridium purpureum","(at5g22220 : 120.0) Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway. Binds DPA and RBR1 proteins. Expressed throughout the cell cycle. Abundance increased by auxin through stabilization of the protein. Elevates CDK levels and activity, even under hormone-free conditions. Promotes cell division and shortens cell doubling time, inhibits cell growth. Transgenic plants overexpressing AtE2Fa contained an increased level of AtE2Fb transcripts that is paralleled by an increase in the amount of the AtE2Fb protein, suggesting that AtE2Fb expression might actually be up-regulated by the AtE2Fa transcription factor.; E2F transcription factor 1 (E2F1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: E2F transcription factor 3 (TAIR:AT2G36010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 240.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3467.7","No alias","Porphyridium purpureum","(at1g67630 : 101.0) DNA polymerase alpha 2 (POLA2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase alpha, subunit B N-terminal (InterPro:IPR013627), DNA polymerase alpha, subunit B (InterPro:IPR016722), DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 415 Blast hits to 412 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 140; Plants - 46; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). & (reliability: 202.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3475.3","No alias","Porphyridium purpureum","(q00268|pcna1_dauca : 227.0) Proliferating cell nuclear antigen (PCNA) (Cyclin) - Daucus carota (Carrot) & (at1g07370 : 226.0) Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation.; proliferating cellular nuclear antigen 1 (PCNA1); CONTAINS InterPro DOMAIN/s: Proliferating cell nuclear antigen, PCNA (InterPro:IPR000730), Proliferating cell nuclear antigen, PCNA, C-terminal (InterPro:IPR022649), Proliferating cell nuclear antigen, PCNA, conserved site (InterPro:IPR022659), Proliferating cell nuclear antigen, PCNA, N-terminal (InterPro:IPR022648); BEST Arabidopsis thaliana protein match is: proliferating cell nuclear antigen 2 (TAIR:AT2G29570.1); Has 1857 Blast hits to 1845 proteins in 456 species: Archae - 391; Bacteria - 0; Metazoa - 315; Fungi - 169; Plants - 159; Viruses - 71; Other Eukaryotes - 752 (source: NCBI BLink). & (reliability: 452.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3488.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3494.10","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3537.4","No alias","Porphyridium purpureum","(at2g07690 : 633.0) Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and  endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the  cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.; MINICHROMOSOME MAINTENANCE 5 (MCM5); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin, nucleus, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 5 (InterPro:IPR008048); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1). & (q43704|mcm3_maize : 282.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1266.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3646.5","No alias","Porphyridium purpureum","(at1g21690 : 280.0) embryo defective 1968 (EMB1968); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), Replication factor C (InterPro:IPR013748); BEST Arabidopsis thaliana protein match is: replication factor C 2 (TAIR:AT1G63160.1). & (gnl|cdd|68872 : 87.0) no description available & (reliability: 560.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3692.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3693.5","No alias","Porphyridium purpureum","(at5g41880 : 265.0) POLA3; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer, DNA replication; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, small subunit (InterPro:IPR002755), DNA primase, small subunit, eukaryotic/archaeal (InterPro:IPR014052); Has 510 Blast hits to 504 proteins in 249 species: Archae - 95; Bacteria - 0; Metazoa - 124; Fungi - 138; Plants - 44; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink). & (reliability: 530.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_429.9","No alias","Porphyridium purpureum","(at5g44635 : 608.0) MINICHROMOSOME MAINTENANCE 6 (MCM6); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: shoot apex; EXPRESSED DURING: IL.00 inflorescence just visible; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 6 (InterPro:IPR008049); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q43704|mcm3_maize : 262.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1216.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4408.4","No alias","Porphyridium purpureum","(at2g26060 : 174.0) embryo defective 1345 (emb1345); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G32990.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 348.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4408.5","No alias","Porphyridium purpureum","(q9xfh3|mad2_maize : 179.0) Mitotic spindle checkpoint protein MAD2 - Zea mays (Maize) & (at3g25980 : 176.0) Encodes MAD2 (MITOTIC ARREST-DEFICIENT 2). May have the spindle assembly checkpoint protein functions conserved from yeast to humans.; MITOTIC ARREST-DEFICIENT 2 (MAD2); CONTAINS InterPro DOMAIN/s: DNA-binding HORMA (InterPro:IPR003511). & (reliability: 352.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4416.17","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4416.9","No alias","Porphyridium purpureum","(at1g67320 : 211.0) DNA primase, large subunit family; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, large subunit, eukaryotic (InterPro:IPR016558), DNA primase, large subunit, eukaryotic/archaeal (InterPro:IPR007238). & (reliability: 422.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4420.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4468.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4468.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4491.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_490.1","No alias","Porphyridium purpureum","(at4g02060 : 555.0) Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and  endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the  cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.; PROLIFERA (PRL); CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 7 (InterPro:IPR008050); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT5G44635.1). & (q43704|mcm3_maize : 239.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1110.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_493.10","No alias","Porphyridium purpureum","(at2g16440 : 599.0) MINICHROMOSOME MAINTENANCE 4 (MCM4); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 4 (InterPro:IPR008047); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT5G44635.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q43704|mcm3_maize : 278.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1198.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_494.1","No alias","Porphyridium purpureum","(at2g26980 : 238.0) encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers.; CBL-interacting protein kinase 3 (CIPK3); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: Ca2+regulated serine-threonine protein kinase family protein (TAIR:AT5G21326.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 234.0) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 476.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_510.3","No alias","Porphyridium purpureum","(at3g44530 : 196.0) Encodes a nuclear localized WD-repeat containing protein involved in negative regulation of knox gene expression via epigenetic mechanism of chromatin re-organization. Interacts physically and genetically with AS1. Expressed in meristem and leaf primordia. Homozygous mutants are embryo lethal. Phenotype of cosuppressed lines is variable but show effects on leaf development similar to as1/as2.; homolog of histone chaperone HIRA (HIRA); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), TUP1-like enhancer of split (InterPro:IPR011494), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G64630.2). & (reliability: 392.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_522.19","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_537.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_539.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_567.4","No alias","Porphyridium purpureum","(at2g40550 : 167.0) Encodes a nuclear localized target of E2Fa-DPa, transcription factors controlling cell cycle progression. Required for sister chromatid cohesion and DNA repair.; E2F target gene 1 (ETG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: sister chromatid cohesion, postreplication repair, DNA replication; LOCATED IN: nuclear replisome, nucleus, chloroplast envelope, MCM complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2044, membrane (InterPro:IPR019140); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 334.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_602.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_616.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000042.241","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000042.61","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000057.93","No alias","Cyanophora paradoxa","(at4g02460 : 221.0) Encodes a protein similar to PMS1 in yeast, a member of the family of eukaryotic MutL homologs. The protein appears to play a role in DNA mismatch repair and in the suppression of somatic homeologous recombination.; POSTMEIOTIC SEGREGATION 1 (PMS1); FUNCTIONS IN: mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, fruit development, seed development, DNA recombination, pollen development; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair, conserved site (InterPro:IPR014762), ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA mismatch repair protein, C-terminal (InterPro:IPR013507), MutL, C-terminal, dimerisation (InterPro:IPR014790), DNA mismatch repair protein, N-terminal (InterPro:IPR014763), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), DNA mismatch repair protein (InterPro:IPR002099), Post Meiotic Segregation 2 (InterPro:IPR015434), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: MUTL-homologue 1 (TAIR:AT4G09140.1); Has 10471 Blast hits to 7086 proteins in 2377 species: Archae - 138; Bacteria - 7516; Metazoa - 568; Fungi - 666; Plants - 148; Viruses - 0; Other Eukaryotes - 1435 (source: NCBI BLink). & (reliability: 442.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000076.53","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000093.121","No alias","Cyanophora paradoxa","(q9xfg3|tbg_phypa : 270.0) Tubulin gamma chain (Gamma tubulin) - Physcomitrella patens (Moss) & (at5g05620 : 262.0) Paralog of TUBG1, required for centrosomal and noncentrosomal microtubule nucleation. Involved in specification of cell identity, such as stomatal patterning. Constitutively expressed throughout plant.; gamma-tubulin  complex protein 2 (GCP2); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: in 9 processes; LOCATED IN: in 6 components; CONTAINS InterPro DOMAIN/s: Gamma tubulin (InterPro:IPR002454), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: gamma-tubulin (TAIR:AT3G61650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 524.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000093.122","No alias","Cyanophora paradoxa","(q9xfg3|tbg_phypa : 385.0) Tubulin gamma chain (Gamma tubulin) - Physcomitrella patens (Moss) & (at5g05620 : 376.0) Paralog of TUBG1, required for centrosomal and noncentrosomal microtubule nucleation. Involved in specification of cell identity, such as stomatal patterning. Constitutively expressed throughout plant.; gamma-tubulin  complex protein 2 (GCP2); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: in 9 processes; LOCATED IN: in 6 components; CONTAINS InterPro DOMAIN/s: Gamma tubulin (InterPro:IPR002454), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: gamma-tubulin (TAIR:AT3G61650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 752.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000093.4","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000093.55","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000113.108","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000128.24","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000144.164","No alias","Cyanophora paradoxa","(at2g16440 : 634.0) MINICHROMOSOME MAINTENANCE 4 (MCM4); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 4 (InterPro:IPR008047); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT5G44635.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q43704|mcm3_maize : 294.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1268.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000144.188","No alias","Cyanophora paradoxa","(at5g66750 : 92.4) Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1  shows some resistance to agrobacterium-mediated root transformation.; chromatin remodeling 1 (CHR1); FUNCTIONS IN: helicase activity, ATPase activity; INVOLVED IN: methylation-dependent chromatin silencing, DNA mediated transformation, transposition, RNA-mediated; LOCATED IN: nucleosome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 80.9) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 184.8) &  (original description: no original description)","protein_coding"
"evm.model.tig00000157.40","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000189.50","No alias","Cyanophora paradoxa","(at2g47980 : 176.0) Essential to the monopolar orientation of the kinetochores during meiosis.; sister-chromatid cohesion protein 3 (SCC3); FUNCTIONS IN: binding; INVOLVED IN: mitosis, attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation, meiotic sister chromatid cohesion, centromeric; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), STAG (InterPro:IPR013721), Stromalin conservative domain (InterPro:IPR020839); Has 568 Blast hits to 559 proteins in 184 species: Archae - 0; Bacteria - 2; Metazoa - 324; Fungi - 134; Plants - 52; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). & (reliability: 352.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000237.42","No alias","Cyanophora paradoxa","(o48653|dpola_orysa : 568.0) DNA polymerase alpha catalytic subunit (EC 2.7.7.7) - Oryza sativa (Rice) & (at5g67100 : 554.0) Encodes the putative catalytic subunit of the DNA polymerase alpha.  Interacts with genes involved in chromatin-mediated cellular memory. ICU2 genetically interacts with TERMINAL FLOWER2, the ortholog of HETEROCHROMATIN PROTEIN1 of animals and yeasts, and with the Polycomb group (PcG) gene CURLY LEAF. A number of regulatory genes were derepressed in the icu2-1 mutant, including genes associated with flowering time, floral meristem, and floral organ identity. Mutant has curled, involute leaves and causes early flowering.; INCURVATA2 (ICU2); FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: negative regulation of flower development, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134), Zinc finger, DNA-directed DNA polymerase, family B, alpha (InterPro:IPR015088), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B,  pol2 (InterPro:IPR004578); BEST Arabidopsis thaliana protein match is: DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (TAIR:AT5G63960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1108.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000241.188","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000241.38","No alias","Cyanophora paradoxa","(at4g02060 : 657.0) Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and  endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the  cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.; PROLIFERA (PRL); CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 7 (InterPro:IPR008050); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT5G44635.1). & (q43704|mcm3_maize : 291.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1314.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000241.94","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000241.96","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000342.9","No alias","Cyanophora paradoxa","(at5g41880 : 330.0) POLA3; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer, DNA replication; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, small subunit (InterPro:IPR002755), DNA primase, small subunit, eukaryotic/archaeal (InterPro:IPR014052); Has 510 Blast hits to 504 proteins in 249 species: Archae - 95; Bacteria - 0; Metazoa - 124; Fungi - 138; Plants - 44; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink). & (reliability: 660.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000378.21","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000383.89","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000388.53","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000403.93","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000545.42","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000551.12","No alias","Cyanophora paradoxa"," (original description: no original description)","protein_coding"
"evm.model.tig00000571.19","No alias","Cyanophora paradoxa","(at2g19330 : 115.0) Encodes PIRL6, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.; plant intracellular ras group-related LRR 6 (PIRL6); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 7 (TAIR:AT4G29880.1); Has 63918 Blast hits to 28732 proteins in 1043 species: Archae - 35; Bacteria - 6419; Metazoa - 27911; Fungi - 2141; Plants - 23572; Viruses - 21; Other Eukaryotes - 3819 (source: NCBI BLink). & (reliability: 208.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000615.19","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000624.6","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000691.35","No alias","Cyanophora paradoxa","(at3g06010 : 234.0) Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein.  AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.; ATCHR12; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to water deprivation, response to salt stress, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT5G19310.1); Has 23556 Blast hits to 19403 proteins in 2220 species: Archae - 141; Bacteria - 6122; Metazoa - 5759; Fungi - 4503; Plants - 1859; Viruses - 268; Other Eukaryotes - 4904 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 220.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 468.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000711.46","No alias","Cyanophora paradoxa","(at2g27170 : 471.0) Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment.; TITAN7 (TTN7); FUNCTIONS IN: ATP binding; INVOLVED IN: sister chromatid cohesion, chromosome segregation; LOCATED IN: cohesin complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 2 (TAIR:AT5G62410.1); Has 158776 Blast hits to 77347 proteins in 3496 species: Archae - 2059; Bacteria - 28403; Metazoa - 67946; Fungi - 11949; Plants - 6773; Viruses - 706; Other Eukaryotes - 40940 (source: NCBI BLink). & (reliability: 942.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000718.32","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000737.5","No alias","Cyanophora paradoxa","(at4g12620 : 196.0) Origin Recognition Complex subunit 1b. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with ORC2 and ORC5. Highly expressed in proliferating cells. Expression levels are independent of light regime.; origin of replication complex 1B (ORC1B); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Origin recognition complex, subunit 1 (InterPro:IPR020793), ATPase, AAA+ type, core (InterPro:IPR003593), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: origin recognition complex 1 (TAIR:AT4G14700.1); Has 5914 Blast hits to 5512 proteins in 383 species: Archae - 477; Bacteria - 4; Metazoa - 3209; Fungi - 806; Plants - 927; Viruses - 0; Other Eukaryotes - 491 (source: NCBI BLink). & (reliability: 392.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000754.31","No alias","Cyanophora paradoxa","(at1g08130 : 306.0) Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways.  Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus.; DNA ligase 1 (LIG1); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, DNA replication, DNA recombination; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059); BEST Arabidopsis thaliana protein match is: ATP-dependent DNA ligase (TAIR:AT1G49250.1); Has 3556 Blast hits to 3521 proteins in 879 species: Archae - 298; Bacteria - 1538; Metazoa - 375; Fungi - 434; Plants - 112; Viruses - 159; Other Eukaryotes - 640 (source: NCBI BLink). & (q7x7e9|dnl4_orysa : 80.9) Putative DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (Polydeoxyribonucleotide synthase [ATP] 4) - Oryza sativa (Rice) & (reliability: 612.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000789.41","No alias","Cyanophora paradoxa","(at1g27880 : 173.0) DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein  (TAIR:AT4G35740.1); Has 41244 Blast hits to 39032 proteins in 2984 species: Archae - 762; Bacteria - 21282; Metazoa - 5401; Fungi - 4173; Plants - 3671; Viruses - 588; Other Eukaryotes - 5367 (source: NCBI BLink). & (reliability: 346.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000789.46","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000808.15","No alias","Cyanophora paradoxa","(at5g58230 : 455.0) Encodes a WD-40 repeat containing protein that functions in chromatin assembly as part of the CAF1 and FIE complex. Mutants exhibit parthenogenetic development that includes proliferation of unfertilized endosperm and embryos. In heterozygous plants 50% of embryos abort. Of the aborted embryos the early aborted class are homozygous and the later aborting lass are heterozygotes in which the defective allele is maternally transmitted. Other phenotypes include defects in ovule morphogenesis and organ initiation,as well as increased levels of heterochromatic DNA. MSI1 is needed for the transition to flowering. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis. In the ovule, the MSI1 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization. MSI is biallelically expressed, the paternall allele is expressed in the endosperm and embryo and is not imprinted. MSI1 forms a complex with RBR1 that is required for activation of the imprinted genes FIS2 and FWA. This activation is mediated by MSI1/RBR1 mediated repression of MET1.; MULTICOPY SUPRESSOR OF IRA1 (MSI1); FUNCTIONS IN: protein binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus, chloroplast, chromatin remodeling complex, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone-binding protein RBBP4 (InterPro:IPR022052), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT2G16780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 910.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000823.25","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000836.12","No alias","Cyanophora paradoxa"," (original description: no original description)","protein_coding"
"evm.model.tig00000849.10","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000865.64","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000889.12","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000900.23","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000903.42","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000980.12","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001007.11","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001024.15","No alias","Cyanophora paradoxa","(at1g57820 : 133.0) Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro.  The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.; VARIANT IN METHYLATION 1 (VIM1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SRA-YDG (InterPro:IPR003105), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G57800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 256.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001041.25","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001056.19","No alias","Cyanophora paradoxa","(at2g21470 : 275.0) Encodes one of the two subunits of the SUMO activation enzyme required during sumolation.  Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein.; SUMO-activating enzyme 2 (SAE2); CONTAINS InterPro DOMAIN/s: Ubiquitin-activating enzyme repeat (InterPro:IPR000127), Ubiquitin-activating enzyme (InterPro:IPR019572), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: E1 C-terminal related 1 (TAIR:AT5G19180.1). & (p31251|ube12_wheat : 135.0) Ubiquitin-activating enzyme E1 2 - Triticum aestivum (Wheat) & (reliability: 550.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001094.18","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001224.8","No alias","Cyanophora paradoxa","(at3g18524 : 614.0) Encodes a DNA mismatch repair homolog of human MutS gene, MSH6. MSH2 is involved in maintaining genome stability and repressing recombination of mismatched heteroduplexes.There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2 has different binding specificity to different mismatches in combination with MSH3, MSH6, or MSH7.; MUTS homolog 2 (MSH2); FUNCTIONS IN: damaged DNA binding, protein binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, negative regulation of reciprocal meiotic recombination; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein, MSH2 (InterPro:IPR011184); BEST Arabidopsis thaliana protein match is: homolog of DNA mismatch repair protein MSH3 (TAIR:AT4G25540.1); Has 13560 Blast hits to 13453 proteins in 2654 species: Archae - 128; Bacteria - 8942; Metazoa - 734; Fungi - 813; Plants - 457; Viruses - 3; Other Eukaryotes - 2483 (source: NCBI BLink). & (q9xgc9|msh2_maize : 591.0) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 1228.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001254.1","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001333.30","No alias","Cyanophora paradoxa","(at1g04730 : 146.0) Necessary for sister chromatid cohesion. Acts in synergy with ETG1.; CHROMOSOME TRANSMISSION FIDELITY 18 (CTF18); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: sister chromatid cohesion; LOCATED IN: replication fork; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: replication factor C1 (TAIR:AT5G22010.1); Has 4018 Blast hits to 4006 proteins in 709 species: Archae - 400; Bacteria - 666; Metazoa - 673; Fungi - 766; Plants - 379; Viruses - 21; Other Eukaryotes - 1113 (source: NCBI BLink). & (reliability: 292.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001466.2","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001545.7","No alias","Cyanophora paradoxa","(q9lre6|dpod1_orysa : 1007.0) DNA polymerase delta catalytic subunit (EC 2.7.7.7) - Oryza sativa (Rice) & (at5g63960 : 1000.0) EMBRYO DEFECTIVE 2780 (EMB2780); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: DNA replication, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B,  pol2 (InterPro:IPR004578); BEST Arabidopsis thaliana protein match is: recovery protein 3 (TAIR:AT1G67500.2). & (reliability: 2000.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020537.3","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020553.188","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020554.16","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020554.77","No alias","Cyanophora paradoxa","(at1g44900 : 595.0) Encodes MCM2 (MINICHROMOSOME MAINTENANCE 2), a protein essential to embryo development. Overexpression results in altered root meristem function.; MINICHROMOSOME MAINTENANCE 2 (MCM2); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: nuclear chromatin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 2 (InterPro:IPR008045), MCM protein 2, N-terminal (InterPro:IPR021092); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1). & (q43704|mcm3_maize : 207.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1190.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020556.22","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020563.29","No alias","Cyanophora paradoxa","(at2g28840 : 85.5) XB3 ortholog 1 in Arabidopsis thaliana (XBAT31); FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 3 in Arabidopsis thaliana (TAIR:AT5G07270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 171.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020563.82","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020614.100","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020629.146","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020746.1","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020848.68","No alias","Cyanophora paradoxa","(at1g67320 : 337.0) DNA primase, large subunit family; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, large subunit, eukaryotic (InterPro:IPR016558), DNA primase, large subunit, eukaryotic/archaeal (InterPro:IPR007238). & (reliability: 674.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020875.14","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020904.52","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020909.3","No alias","Cyanophora paradoxa","(at3g04810 : 212.0) Encodes AtNek2, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals.  Plant Neks might be involved in plant development processes.; NIMA-related kinase 2 (NEK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NIMA-related kinase 3 (TAIR:AT5G28290.1); Has 124376 Blast hits to 122221 proteins in 4182 species: Archae - 113; Bacteria - 14280; Metazoa - 45892; Fungi - 12262; Plants - 30619; Viruses - 487; Other Eukaryotes - 20723 (source: NCBI BLink). & (q5qn75|m2k1_orysa : 129.0) Mitogen-activated protein kinase kinase 1 (EC 2.7.12.2) (MAP kinase kinase 1) (MAPKK1) (OsMEK1) - Oryza sativa (Rice) & (reliability: 424.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020912.93","No alias","Cyanophora paradoxa","(at5g20930 : 230.0) Nuclear serine/threonine protein kinase that requires a coiled-coil region for oligomerization and catalytic activity. Required for leaf and flower development. Expression localized to the developing style by stage 13.; TOUSLED (TSL); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ataurora3 (TAIR:AT2G45490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 460.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020918.5","No alias","Cyanophora paradoxa","(at5g44635 : 634.0) MINICHROMOSOME MAINTENANCE 6 (MCM6); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: shoot apex; EXPRESSED DURING: IL.00 inflorescence just visible; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 6 (InterPro:IPR008049); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q43704|mcm3_maize : 243.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1268.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020930.25","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021035.25","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021070.70","No alias","Cyanophora paradoxa","(at2g29680 : 205.0) Encodes cell division control protein 6 (CDC6).; cell division control 6 (CDC6); FUNCTIONS IN: ATP binding; INVOLVED IN: regulation of cell cycle, DNA replication; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), CDC6, C-terminal (InterPro:IPR015163), Cell division control, Cdc6 (InterPro:IPR016314); BEST Arabidopsis thaliana protein match is: Cell division control, Cdc6 (TAIR:AT1G07270.1); Has 1385 Blast hits to 1377 proteins in 339 species: Archae - 397; Bacteria - 0; Metazoa - 348; Fungi - 289; Plants - 116; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink). & (reliability: 410.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021108.39","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021257.8","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021312.11","No alias","Cyanophora paradoxa","(p25011|ccnb1_soybn : 141.0) G2/mitotic-specific cyclin S13-6 (B-like cyclin) - Glycine max (Soybean) & (at4g35620 : 135.0) Cyclin B2;2 (CYCB2;2); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin B2;1 (TAIR:AT2G17620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 270.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021318.71","No alias","Cyanophora paradoxa","(at5g63200 : 92.8) tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 18351 Blast hits to 10064 proteins in 1197 species: Archae - 736; Bacteria - 8120; Metazoa - 2665; Fungi - 514; Plants - 588; Viruses - 0; Other Eukaryotes - 5728 (source: NCBI BLink). & (reliability: 185.6) &  (original description: no original description)","protein_coding"
"evm.model.tig00021319.29","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021348.83","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021352.40","No alias","Cyanophora paradoxa","(at5g46280 : 487.0) MINICHROMOSOME MAINTENANCE 3 (MCM3); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 3 (InterPro:IPR008046); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT4G02060.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q43704|mcm3_maize : 436.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 974.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021432.30","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021434.9","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021462.13","No alias","Cyanophora paradoxa","(at3g54610 : 310.0) Encodes a histone acetyltransferase that is plays a role in the determination of the embryonic root-shoot axis.  It is also required to regulate the floral meristem activity by modulating the extent of expression of WUS and AG.  In other eukaryotes, this protein is recruited to specific promoters by DNA binding transcription factors and is thought to promote transcription by acetylating the N-terminal tail of histone H3. The enzyme has indeed been shown to catalyse primarily the acetylation of H3 histone with only traces of H4 and H2A/B being acetylated. Non-acetylated H3 peptide or an H3 peptide that had been  previously acetylated on K9 both serve as excellent substrates  for HAG1-catalyzed acetylation. However, prior acetylation  of H3 lysine 14 blocks radioactive acetylation of the  peptide by HAG1.  HAG1 is specific for  histone H3 lysine 14.; histone acetyltransferase of the GNAT family 1 (HAG1); FUNCTIONS IN: histone acetyltransferase activity, DNA binding, H3 histone acetyltransferase activity; INVOLVED IN: flower development, histone acetylation, response to light stimulus, positive regulation of transcription, root morphogenesis; LOCATED IN: histone acetyltransferase complex, nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Bromodomain, conserved site (InterPro:IPR018359), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: nuclear protein X1 (TAIR:AT5G63320.1); Has 13698 Blast hits to 5805 proteins in 367 species: Archae - 4; Bacteria - 1437; Metazoa - 4852; Fungi - 1484; Plants - 516; Viruses - 1; Other Eukaryotes - 5404 (source: NCBI BLink). & (reliability: 620.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021521.14","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021534.5","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021582.17","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021616.10","No alias","Cyanophora paradoxa","(at4g25540 : 375.0) encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G).; homolog of DNA mismatch repair protein MSH3 (MSH3); CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695); BEST Arabidopsis thaliana protein match is: MUTS homolog 6 (TAIR:AT4G02070.2); Has 14547 Blast hits to 13713 proteins in 2703 species: Archae - 153; Bacteria - 9793; Metazoa - 705; Fungi - 864; Plants - 451; Viruses - 3; Other Eukaryotes - 2578 (source: NCBI BLink). & (q9xgc9|msh2_maize : 143.0) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 750.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021621.26","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"Glyma.01G187400","No alias","Glycine max","DNA-directed DNA polymerases","protein_coding"
"Glyma.02G064600","No alias","Glycine max","agenet domain-containing protein","protein_coding"
"Glyma.02G080700","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.02G107300","No alias","Glycine max","zinc finger homeodomain  1","protein_coding"
"Glyma.02G305600","No alias","Glycine max","HEAT SHOCK PROTEIN 89.1","protein_coding"
"Glyma.03G186300","No alias","Glycine max","phosphatidyl inositol monophosphate 5 kinase","protein_coding"
"Glyma.03G219200","No alias","Glycine max","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Glyma.04G033100","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.04G222000","No alias","Glycine max","E2F target gene 1","protein_coding"
"Glyma.04G250200","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.05G129700","No alias","Glycine max","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Glyma.05G150500","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.05G174700","No alias","Glycine max","Protein of unknown function (DUF707)","protein_coding"
"Glyma.05G190300","No alias","Glycine max","Plant invertase/pectin methylesterase inhibitor superfamily","protein_coding"
"Glyma.05G190800","No alias","Glycine max","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"Glyma.06G033100","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.06G112600","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.06G143400","No alias","Glycine max","E2F target gene 1","protein_coding"
"Glyma.06G155300","No alias","Glycine max","DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases","protein_coding"
"Glyma.06G183400","No alias","Glycine max","polygalacturonase 2","protein_coding"
"Glyma.06G309300","No alias","Glycine max","Protein kinase superfamily protein","protein_coding"
"Glyma.07G034900","No alias","Glycine max","lipoxygenase 1","protein_coding"
"Glyma.07G152900","No alias","Glycine max","DNAJ heat shock N-terminal domain-containing protein","protein_coding"
"Glyma.07G238400","No alias","Glycine max","minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Glyma.08G009100","No alias","Glycine max","basic helix-loop-helix (bHLH) DNA-binding superfamily protein","protein_coding"
"Glyma.08G053702","No alias","Glycine max","WUSCHEL related homeobox 1","protein_coding"
"Glyma.08G077300","No alias","Glycine max","embryo sac development arrest 14","protein_coding"
"Glyma.08G084400","No alias","Glycine max","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Glyma.08G102300","No alias","Glycine max","DEAD/DEAH box RNA helicase family protein","protein_coding"
"Glyma.08G107400","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.08G130400","No alias","Glycine max","ribosomal protein-related","protein_coding"
"Glyma.08G334900","No alias","Glycine max","proliferating cell nuclear antigen 2","protein_coding"
"Glyma.08G340200","No alias","Glycine max","DYNAMIN-like 1E","protein_coding"
"Glyma.09G000700","No alias","Glycine max","ribosomal protein 1","protein_coding"
"Glyma.09G047300","No alias","Glycine max","minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Glyma.10G035700","No alias","Glycine max","homolog of yeast CDT1 A","protein_coding"
"Glyma.10G193200","No alias","Glycine max","heat shock protein 60","protein_coding"
"Glyma.10G227900","No alias","Glycine max","timeless family protein","protein_coding"
"Glyma.10G232200","No alias","Glycine max","detoxifying efflux carrier 35","protein_coding"
"Glyma.10G274600","No alias","Glycine max","Integrase-type DNA-binding superfamily protein","protein_coding"
"Glyma.11G019000","No alias","Glycine max","cytokinin response factor 2","protein_coding"
"Glyma.11G048366","No alias","Glycine max","ARM repeat superfamily protein","protein_coding"
"Glyma.11G059500","No alias","Glycine max","methyl esterase 3","protein_coding"
"Glyma.11G113300","No alias","Glycine max","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Glyma.11G247900","No alias","Glycine max","DNA polymerase alpha 2","protein_coding"
"Glyma.12G039200","No alias","Glycine max","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Glyma.13G051500","No alias","Glycine max","alpha/beta-Hydrolases superfamily protein","protein_coding"
"Glyma.13G053000","No alias","Glycine max","reversibly glycosylated polypeptide 2","protein_coding"
"Glyma.13G088300","No alias","Glycine max","Haloacid dehalogenase-like hydrolase (HAD) superfamily protein","protein_coding"
"Glyma.13G122100","No alias","Glycine max","homolog of yeast CDT1 A","protein_coding"
"Glyma.13G156400","No alias","Glycine max","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Glyma.13G214200","No alias","Glycine max","BRCT domain-containing DNA repair protein","protein_coding"
"Glyma.13G245000","No alias","Glycine max","Transmembrane amino acid transporter family protein","protein_coding"
"Glyma.13G254900","No alias","Glycine max","mitochondrial HSO70 2","protein_coding"
"Glyma.13G303000","No alias","Glycine max","Cyclin D6;1","protein_coding"
"Glyma.14G053700","No alias","Glycine max","Peroxidase superfamily protein","protein_coding"
"Glyma.14G219700","No alias","Glycine max","Chaperone protein htpG family protein","protein_coding"
"Glyma.15G059900","No alias","Glycine max","mitochondrial HSO70 2","protein_coding"
"Glyma.15G117000","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.15G154900","No alias","Glycine max","minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Glyma.15G271500","No alias","Glycine max","gametophytic factor 2","protein_coding"
"Glyma.16G032000","No alias","Glycine max","RING/U-box superfamily protein","protein_coding"
"Glyma.16G088000","No alias","Glycine max","rotamase FKBP 1","protein_coding"
"Glyma.17G035000","No alias","Glycine max","minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Glyma.17G038500","No alias","Glycine max","ARM repeat superfamily protein","protein_coding"
"Glyma.17G098700","No alias","Glycine max","end binding protein 1B","protein_coding"
"Glyma.17G102500","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.17G104000","No alias","Glycine max","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Glyma.18G009300","No alias","Glycine max","DNA polymerase alpha 2","protein_coding"
"Glyma.18G030700","No alias","Glycine max","cellulase 2","protein_coding"
"Glyma.18G113100","No alias","Glycine max","spermidine hydroxycinnamoyl transferase","protein_coding"
"Glyma.18G121800","No alias","Glycine max","Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain","protein_coding"
"Glyma.19G158400","No alias","Glycine max","Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein","protein_coding"
"Glyma.19G192500","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.19G216100","No alias","Glycine max","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Glyma.20G141200","No alias","Glycine max","gibberellin 2-oxidase 8","protein_coding"
"Glyma.20G164400","No alias","Glycine max","timeless family protein","protein_coding"
"GRMZM2G017187","No alias","Zea mays","auxin response factor 1","protein_coding"
"GRMZM2G021069","No alias","Zea mays","minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"GRMZM2G033785","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G057402","No alias","Zea mays","calcium-dependent lipid-binding family protein","protein_coding"
"GRMZM2G077437","No alias","Zea mays","Plant protein of unknown function (DUF828)","protein_coding"
"GRMZM2G102183","No alias","Zea mays","malate synthase","protein_coding"
"GRMZM2G139894","No alias","Zea mays","minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"GRMZM2G162065","No alias","Zea mays","exocyst subunit exo70 family protein G1","protein_coding"
"GRMZM2G305287","No alias","Zea mays","minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"GRMZM2G367857","No alias","Zea mays","DNA-directed DNA polymerases","protein_coding"
"HORVU1Hr1G029770.15","No alias","Hordeum vulgare","component *(MCM6) of MCM replicative DNA helicase complex","protein_coding"
"HORVU1Hr1G063700.2","No alias","Hordeum vulgare","component *(MCM2) of MCM replicative DNA helicase complex","protein_coding"
"HORVU1Hr1G081890.1","No alias","Hordeum vulgare","EC_2.4 glycosyltransferase","protein_coding"
"HORVU1Hr1G093890.6","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G073750.2","No alias","Hordeum vulgare","component *(E2F) of DREAM cell cycle regulatory complex & E2F-type transcription factor","protein_coding"
"HORVU3Hr1G017570.2","No alias","Hordeum vulgare","associated component *(ETG1) of MCM replicative DNA helicase complex","protein_coding"
"HORVU3Hr1G019670.3","No alias","Hordeum vulgare","profilin actin nucleation protein","protein_coding"
"HORVU3Hr1G020860.2","No alias","Hordeum vulgare","DPB3-type transcription factor","protein_coding"
"HORVU3Hr1G092710.3","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G095780.3","No alias","Hordeum vulgare","urease accessory protein *(UreG)","protein_coding"
"Kfl00003_0770","kfl00003_0770_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00004_0160","kfl00004_0160_v1.1","Klebsormidium nitens","(at3g54650 : 149.0) FBL17; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: generative cell mitosis, seed development, embryo development, ubiquitin-dependent protein catabolic process, pollen development; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); Has 1738 Blast hits to 1195 proteins in 149 species: Archae - 0; Bacteria - 27; Metazoa - 733; Fungi - 89; Plants - 663; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink). & (reliability: 298.0) &  (original description: no original description)","protein_coding"
"Kfl00009_0580","kfl00009_0580_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00010_0620","kfl00010_0620_v1.1","Klebsormidium nitens","(at2g06040 : 273.0) CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G21900.1); Has 5028 Blast hits to 2547 proteins in 240 species: Archae - 0; Bacteria - 125; Metazoa - 2326; Fungi - 765; Plants - 1373; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink). & (reliability: 546.0) &  (original description: no original description)","protein_coding"
"Kfl00015_0380","kfl00015_0380_v1.1","Klebsormidium nitens","(at1g02970 : 135.0) Protein kinase that negatively regulates the entry into mitosis.; WEE1 kinase homolog (WEE1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G19110.2); Has 100256 Blast hits to 98965 proteins in 4396 species: Archae - 165; Bacteria - 12308; Metazoa - 39873; Fungi - 10996; Plants - 18240; Viruses - 408; Other Eukaryotes - 18266 (source: NCBI BLink). & (p28583|cdpk_soybn : 107.0) Calcium-dependent protein kinase SK5 (EC 2.7.11.1) (CDPK) - Glycine max (Soybean) & (reliability: 270.0) &  (original description: no original description)","protein_coding"
"Kfl00019_0360","kfl00019_0360_v1.1","Klebsormidium nitens","(at2g36250 : 450.0) Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis.  It is involved in chloroplast division.; FTSZ2-1; FUNCTIONS IN: protein binding, structural molecule activity; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cell division protein FtsZ, N-terminal (InterPro:IPR000158), Cell division protein FtsZ, conserved site (InterPro:IPR020805), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: Tubulin/FtsZ family protein (TAIR:AT3G52750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 900.0) &  (original description: no original description)","protein_coding"
"Kfl00021_0130","kfl00021_0130_v1.1","Klebsormidium nitens","(at2g46210 : 121.0) Fatty acid/sphingolipid desaturase; FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, iron ion binding, heme binding; INVOLVED IN: oxidation reduction, fatty acid biosynthetic process, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Fatty acid desaturase, type 1 (InterPro:IPR005804), Fatty acid/sphingolipid desaturase (InterPro:IPR012171), Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: Fatty acid/sphingolipid desaturase (TAIR:AT3G61580.1); Has 5941 Blast hits to 5850 proteins in 906 species: Archae - 2; Bacteria - 1188; Metazoa - 1112; Fungi - 1689; Plants - 939; Viruses - 2; Other Eukaryotes - 1009 (source: NCBI BLink). & (reliability: 242.0) &  (original description: no original description)","protein_coding"
"Kfl00021_0480","kfl00021_0480_v1.1","Klebsormidium nitens","(at5g10720 : 210.0) member of Histidine Kinase; histidine kinase 5 (HK5); FUNCTIONS IN: protein histidine kinase activity; INVOLVED IN: cytokinin mediated signaling pathway; LOCATED IN: vacuole; EXPRESSED IN: male gametophyte, root; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CheY-like (InterPro:IPR011006), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), ATPase-like, ATP-binding domain (InterPro:IPR003594), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein-related (TAIR:AT5G10680.1); Has 142896 Blast hits to 126384 proteins in 3154 species: Archae - 1152; Bacteria - 126386; Metazoa - 257; Fungi - 2334; Plants - 2049; Viruses - 33; Other Eukaryotes - 10685 (source: NCBI BLink). & (o81122|etr1_maldo : 111.0) Ethylene receptor (EC 2.7.13.3) - Malus domestica (Apple) (Malus sylvestris) & (reliability: 420.0) &  (original description: no original description)","protein_coding"
"Kfl00022_0250","kfl00022_0250_v1.1","Klebsormidium nitens","(at1g21690 : 472.0) embryo defective 1968 (EMB1968); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), Replication factor C (InterPro:IPR013748); BEST Arabidopsis thaliana protein match is: replication factor C 2 (TAIR:AT1G63160.1). & (reliability: 944.0) &  (original description: no original description)","protein_coding"
"Kfl00028_0260","kfl00028_0260_v1.1","Klebsormidium nitens","(at2g44580 : 266.0) zinc ion binding; CONTAINS InterPro DOMAIN/s: Sister chromatid cohesion protein DCC1 (InterPro:IPR019128); Has 214 Blast hits to 211 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 49; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 532.0) &  (original description: no original description)","protein_coding"
"Kfl00029_0270","kfl00029_0270_v1.1","Klebsormidium nitens","(at5g44635 : 779.0) MINICHROMOSOME MAINTENANCE 6 (MCM6); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: shoot apex; EXPRESSED DURING: IL.00 inflorescence just visible; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 6 (InterPro:IPR008049); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q43704|mcm3_maize : 281.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1558.0) &  (original description: no original description)","protein_coding"
"Kfl00030_0270","kfl00030_0270_v1.1","Klebsormidium nitens","(at5g66750 : 640.0) Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1  shows some resistance to agrobacterium-mediated root transformation.; chromatin remodeling 1 (CHR1); FUNCTIONS IN: helicase activity, ATPase activity; INVOLVED IN: methylation-dependent chromatin silencing, DNA mediated transformation, transposition, RNA-mediated; LOCATED IN: nucleosome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 439.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1280.0) &  (original description: no original description)","protein_coding"
"Kfl00031_0160","kfl00031_0160_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00033_0310","kfl00033_0310_v1.1","Klebsormidium nitens","(at2g16440 : 825.0) MINICHROMOSOME MAINTENANCE 4 (MCM4); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 4 (InterPro:IPR008047); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT5G44635.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q43704|mcm3_maize : 290.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1650.0) &  (original description: no original description)","protein_coding"
"Kfl00040_0160","kfl00040_0160_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00040_0230","kfl00040_0230_v1.1","Klebsormidium nitens","(at3g02360 : 679.0) 6-phosphogluconate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to salt stress; LOCATED IN: peroxisome; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, decarboxylating (InterPro:IPR006113), 6-phosphogluconate dehydrogenase, C-terminal (InterPro:IPR006114), 6-phosphogluconate dehydrogenase (InterPro:IPR006183), NAD(P)-binding domain (InterPro:IPR016040), Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension (InterPro:IPR012284); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT5G41670.2); Has 12208 Blast hits to 12120 proteins in 2600 species: Archae - 108; Bacteria - 8004; Metazoa - 655; Fungi - 226; Plants - 316; Viruses - 4; Other Eukaryotes - 2895 (source: NCBI BLink). & (reliability: 1358.0) &  (original description: no original description)","protein_coding"
"Kfl00043_0150","kfl00043_0150_v1.1","Klebsormidium nitens","(at4g34570 : 494.0) Encodes a bifunctional dihydrofolate reductase - thymidylate synthase gene. This is unique in Arabidopsis and protozoa. Other organisms have independent genes for this function.; thymidylate synthase 2 (THY-2); CONTAINS InterPro DOMAIN/s: Thymidylate synthase, active site (InterPro:IPR020940), Dihydrofolate reductase domain (InterPro:IPR001796), Dihydrofolate reductase conserved site (InterPro:IPR017925), Bifunctional dihydrofolate reductase/thymidylate synthase (InterPro:IPR012262), Thymidylate synthase (InterPro:IPR000398); BEST Arabidopsis thaliana protein match is: thymidylate synthase 1 (TAIR:AT2G16370.1); Has 13567 Blast hits to 13544 proteins in 2627 species: Archae - 73; Bacteria - 8801; Metazoa - 517; Fungi - 428; Plants - 92; Viruses - 256; Other Eukaryotes - 3400 (source: NCBI BLink). & (o81395|drts_maize : 493.0) Bifunctional dihydrofolate reductase-thymidylate synthase (DHFR-TS) [Includes: Dihydrofolate reductase (EC 1.5.1.3); Thymidylate synthase (EC 2.1.1.45)] - Zea mays (Maize) & (reliability: 974.0) &  (original description: no original description)","protein_coding"
"Kfl00045_0200","kfl00045_0200_v1.1","Klebsormidium nitens","(at3g05480 : 323.0) Involved in the regulation of DNA damage repair and homologous recombination.; RAD9; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552). & (reliability: 646.0) &  (original description: no original description)","protein_coding"
"Kfl00046_0010","kfl00046_0010_v1.1","Klebsormidium nitens","(at2g29680 : 209.0) Encodes cell division control protein 6 (CDC6).; cell division control 6 (CDC6); FUNCTIONS IN: ATP binding; INVOLVED IN: regulation of cell cycle, DNA replication; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), CDC6, C-terminal (InterPro:IPR015163), Cell division control, Cdc6 (InterPro:IPR016314); BEST Arabidopsis thaliana protein match is: Cell division control, Cdc6 (TAIR:AT1G07270.1); Has 1385 Blast hits to 1377 proteins in 339 species: Archae - 397; Bacteria - 0; Metazoa - 348; Fungi - 289; Plants - 116; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink). & (reliability: 418.0) &  (original description: no original description)","protein_coding"
"Kfl00046_g2","kfl00046_g2_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00051_0100","kfl00051_0100_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00067_0060","kfl00067_0060_v1.1","Klebsormidium nitens","(at2g01120 : 291.0) Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.; origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527). & (reliability: 582.0) &  (original description: no original description)","protein_coding"
"Kfl00069_0160","kfl00069_0160_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00073_0060","kfl00073_0060_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00076_0270","kfl00076_0270_v1.1","Klebsormidium nitens","(at2g32240 : 110.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). & (reliability: 212.0) &  (original description: no original description)","protein_coding"
"Kfl00078_0210","kfl00078_0210_v1.1","Klebsormidium nitens","(at5g17920 : 968.0) Encodes a cytosolic cobalamin-independent methionine synthase, involved in methionine regeneration via the activated methyl cycle (SAM cycle). The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.; COBALAMIN-INDEPENDENT METHIONINE SYNTHASE (ATCIMS); FUNCTIONS IN: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, methionine synthase activity; INVOLVED IN: response to zinc ion, response to salt stress, methionine biosynthetic process; LOCATED IN: in 6 components; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal (InterPro:IPR013215), Methionine synthase, vitamin-B12 independent (InterPro:IPR002629), 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (InterPro:IPR006276); BEST Arabidopsis thaliana protein match is: methionine synthase 2 (TAIR:AT3G03780.3); Has 4442 Blast hits to 4434 proteins in 1682 species: Archae - 183; Bacteria - 3246; Metazoa - 14; Fungi - 206; Plants - 251; Viruses - 2; Other Eukaryotes - 540 (source: NCBI BLink). & (p93263|mete_mescr : 968.0) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent methionine synthase isozyme) (Cobalamin-independent methionine synthase isozyme) - Mesembryanthemum crystallinum (Common ice pl & (reliability: 1908.0) &  (original description: no original description)","protein_coding"
"Kfl00078_0250","kfl00078_0250_v1.1","Klebsormidium nitens","(at4g37210 : 149.0) Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 298.0) &  (original description: no original description)","protein_coding"
"Kfl00092_0330","kfl00092_0330_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00094_0110","kfl00094_0110_v1.1","Klebsormidium nitens","(at1g58370 : 92.8) Encodes a protein with xylanase activity.; RXF12; FUNCTIONS IN: endo-1,4-beta-xylanase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 10 (InterPro:IPR001000), Carbohydrate-binding, CenC-like (InterPro:IPR003305), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (TAIR:AT1G10050.1); Has 2572 Blast hits to 2336 proteins in 449 species: Archae - 10; Bacteria - 1384; Metazoa - 31; Fungi - 355; Plants - 353; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink). & (reliability: 185.6) &  (original description: no original description)","protein_coding"
"Kfl00094_0140","kfl00094_0140_v1.1","Klebsormidium nitens","(at2g21470 : 602.0) Encodes one of the two subunits of the SUMO activation enzyme required during sumolation.  Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein.; SUMO-activating enzyme 2 (SAE2); CONTAINS InterPro DOMAIN/s: Ubiquitin-activating enzyme repeat (InterPro:IPR000127), Ubiquitin-activating enzyme (InterPro:IPR019572), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: E1 C-terminal related 1 (TAIR:AT5G19180.1). & (p31251|ube12_wheat : 117.0) Ubiquitin-activating enzyme E1 2 - Triticum aestivum (Wheat) & (reliability: 1204.0) &  (original description: no original description)","protein_coding"
"Kfl00110_0160","kfl00110_0160_v1.1","Klebsormidium nitens","(q43814|otc_pea : 464.0) Ornithine carbamoyltransferase, chloroplast precursor (EC 2.1.3.3) (OTCase) (Ornithine transcarbamylase) - Pisum sativum (Garden pea) & (at1g75330 : 438.0) ornithine carbamoyltransferase (OTC); FUNCTIONS IN: amino acid binding, ornithine carbamoyltransferase activity, carboxyl- or carbamoyltransferase activity; INVOLVED IN: cellular amino acid metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding (InterPro:IPR006132), Aspartate/ornithine carbamoyltransferase (InterPro:IPR006130), Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain (InterPro:IPR006131), Ornithine carbamoyltransferase (InterPro:IPR002292); BEST Arabidopsis thaliana protein match is: PYRIMIDINE B (TAIR:AT3G20330.1); Has 16793 Blast hits to 16793 proteins in 2905 species: Archae - 534; Bacteria - 11079; Metazoa - 203; Fungi - 280; Plants - 150; Viruses - 6; Other Eukaryotes - 4541 (source: NCBI BLink). & (reliability: 876.0) &  (original description: no original description)","protein_coding"
"Kfl00123_0030","kfl00123_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00125_0130","kfl00125_0130_v1.1","Klebsormidium nitens","(at1g63660 : 770.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1540.0) &  (original description: no original description)","protein_coding"
"Kfl00128_0270","kfl00128_0270_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00130_0130","kfl00130_0130_v1.1","Klebsormidium nitens","(at5g27740 : 530.0) A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.; EMBRYO DEFECTIVE 2775 (EMB2775); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp-loader complex, subunit E, C-terminal (InterPro:IPR019483), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA)  (TAIR:AT1G21690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1060.0) &  (original description: no original description)","protein_coding"
"Kfl00130_0230","kfl00130_0230_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00152_0050","kfl00152_0050_v1.1","Klebsormidium nitens","(at5g03420 : 103.0) 5'-AMP-activated protein kinase-related; BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase-related (TAIR:AT1G27070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 206.0) &  (original description: no original description)","protein_coding"
"Kfl00164_0030","kfl00164_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00165_0140","kfl00165_0140_v1.1","Klebsormidium nitens","(at4g29910 : 184.0) Origin Recognition Complex subunit 5. Involved in the initiation of DNA replication. Interacts strongly with all ORC subunits.; origin recognition complex protein 5 (ORC5); CONTAINS InterPro DOMAIN/s: Origin recognition complex, subunit 5 (InterPro:IPR020796); Has 287 Blast hits to 283 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 92; Plants - 43; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). & (reliability: 368.0) &  (original description: no original description)","protein_coding"
"Kfl00168_0120","kfl00168_0120_v1.1","Klebsormidium nitens","(at3g48000 : 408.0) Encodes a putative (NAD+) aldehyde dehydrogenase.; aldehyde dehydrogenase 2B4 (ALDH2B4); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 2B7 (TAIR:AT1G23800.1); Has 61695 Blast hits to 61296 proteins in 3003 species: Archae - 476; Bacteria - 35240; Metazoa - 2662; Fungi - 2127; Plants - 1668; Viruses - 0; Other Eukaryotes - 19522 (source: NCBI BLink). & (o24174|badh_orysa : 327.0) Betaine-aldehyde dehydrogenase (EC 1.2.1.8) (BADH) - Oryza sativa (Rice) & (reliability: 816.0) &  (original description: no original description)","protein_coding"
"Kfl00175_0230","kfl00175_0230_v1.1","Klebsormidium nitens","(p21727|tpt_pea : 338.0) Triose phosphate/phosphate translocator, chloroplast precursor (cTPT) (p36) (E30) - Pisum sativum (Garden pea) & (at5g46110 : 333.0) mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator; ACCLIMATION OF PHOTOSYNTHESIS TO  ENVIRONMENT 2 (APE2); FUNCTIONS IN: antiporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853), Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696); BEST Arabidopsis thaliana protein match is: glucose 6-phosphate/phosphate translocator 1 (TAIR:AT5G54800.1); Has 2560 Blast hits to 2558 proteins in 418 species: Archae - 2; Bacteria - 316; Metazoa - 499; Fungi - 419; Plants - 1040; Viruses - 0; Other Eukaryotes - 284 (source: NCBI BLink). & (reliability: 666.0) &  (original description: no original description)","protein_coding"
"Kfl00177_0290","kfl00177_0290_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00177_0300","kfl00177_0300_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00184_0010","kfl00184_0010_v1.1","Klebsormidium nitens","(at2g07690 : 812.0) Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and  endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the  cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.; MINICHROMOSOME MAINTENANCE 5 (MCM5); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin, nucleus, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 5 (InterPro:IPR008048); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1). & (q43704|mcm3_maize : 306.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1624.0) &  (original description: no original description)","protein_coding"
"Kfl00223_0080","kfl00223_0080_v1.1","Klebsormidium nitens","(at5g07590 : 518.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 672 Blast hits to 646 proteins in 166 species: Archae - 0; Bacteria - 97; Metazoa - 271; Fungi - 156; Plants - 85; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink). & (reliability: 1036.0) &  (original description: no original description)","protein_coding"
"Kfl00240_0070","kfl00240_0070_v1.1","Klebsormidium nitens","(at5g55280 : 364.0) Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis.  It is involved in chloroplast division.; homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 (FTSZ1-1); FUNCTIONS IN: protein binding, structural molecule activity; INVOLVED IN: chloroplast fission, plastid fission; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cell division protein FtsZ, N-terminal (InterPro:IPR000158), Tubulin, conserved site (InterPro:IPR017975), Cell division protein FtsZ, conserved site (InterPro:IPR020805), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: Tubulin/FtsZ family protein (TAIR:AT3G52750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 728.0) &  (original description: no original description)","protein_coding"
"Kfl00240_0090","kfl00240_0090_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00263_0180","kfl00263_0180_v1.1","Klebsormidium nitens","(at1g78650 : 128.0) Similar to DNA polymerase delta (POLD3), which in other organism was shown to be involved in the elongation of DNA replication.; POLD3; FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: DNA strand elongation involved in DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase subunit Cdc27 (InterPro:IPR019038); Has 2595 Blast hits to 2034 proteins in 330 species: Archae - 0; Bacteria - 228; Metazoa - 1072; Fungi - 424; Plants - 126; Viruses - 27; Other Eukaryotes - 718 (source: NCBI BLink). & (reliability: 256.0) &  (original description: no original description)","protein_coding"
"Kfl00302_0130","kfl00302_0130_v1.1","Klebsormidium nitens","(at3g12280 : 240.0) Encodes a retinoblastoma homologue RETINOBLASTOMA-RELATED protein (RBR or RBR1). RBR controls nuclear proliferation in the female gametophyte.  Also required for correct differentiation of male gametophytic cell types.  Regulates stem cell maintenance in Arabidopsis roots. Involved in the determination of cell cycle arrest in G1 phase after sucrose starvation. RBR1 is also involved in regulation of imprinted genes. Together with MSI1 it represses the expression of MET1. This in turn activates expression of the imprinted genes FIS2 and FWA.; retinoblastoma-related 1 (RBR1); FUNCTIONS IN: transcription factor binding; INVOLVED IN: in 15 processes; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Retinoblastoma-associated protein, B-box (InterPro:IPR002719), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Retinoblastoma-associated protein, A-box (InterPro:IPR002720). & (reliability: 480.0) &  (original description: no original description)","protein_coding"
"Kfl00307_0090","kfl00307_0090_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00322_0110","kfl00322_0110_v1.1","Klebsormidium nitens","(at4g01160 : 82.4) BTB/POZ/Kelch-associated protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/Kelch-associated (InterPro:IPR011705), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: POZ/BTB containin G-protein 1 (TAIR:AT3G61600.2); Has 3481 Blast hits to 3463 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 3173; Fungi - 4; Plants - 136; Viruses - 49; Other Eukaryotes - 119 (source: NCBI BLink). & (reliability: 164.8) &  (original description: no original description)","protein_coding"
"Kfl00323_0150","kfl00323_0150_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00364_0060","kfl00364_0060_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00388_0030","kfl00388_0030_v1.1","Klebsormidium nitens","(at1g26170 : 702.0) ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G59020.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1404.0) &  (original description: no original description)","protein_coding"
"Kfl00422_0010","kfl00422_0010_v1.1","Klebsormidium nitens","(at1g44900 : 989.0) Encodes MCM2 (MINICHROMOSOME MAINTENANCE 2), a protein essential to embryo development. Overexpression results in altered root meristem function.; MINICHROMOSOME MAINTENANCE 2 (MCM2); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: nuclear chromatin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 2 (InterPro:IPR008045), MCM protein 2, N-terminal (InterPro:IPR021092); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1). & (q43704|mcm3_maize : 308.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1978.0) &  (original description: no original description)","protein_coding"
"Kfl00425_0040","kfl00425_0040_v1.1","Klebsormidium nitens","(at1g80560 : 526.0) The AtIMD2 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids.; isopropylmalate dehydrogenase 2 (IMD2); FUNCTIONS IN: 3-isopropylmalate dehydrogenase activity; INVOLVED IN: leucine biosynthetic process, metabolic process; LOCATED IN: chloroplast, chloroplast stroma, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Isopropylmalate dehydrogenase (InterPro:IPR004429), Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate/isopropylmalate dehydrogenase, conserved site (InterPro:IPR019818); BEST Arabidopsis thaliana protein match is: isopropylmalate dehydrogenase 3 (TAIR:AT1G31180.1); Has 15265 Blast hits to 15265 proteins in 2613 species: Archae - 395; Bacteria - 8292; Metazoa - 578; Fungi - 832; Plants - 243; Viruses - 0; Other Eukaryotes - 4925 (source: NCBI BLink). & (p29102|leu3_brana : 521.0) 3-isopropylmalate dehydrogenase, chloroplast precursor (EC 1.1.1.85) (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) - Brassica napus (Rape) & (reliability: 1052.0) &  (original description: no original description)","protein_coding"
"Kfl00479_0080","kfl00479_0080_v1.1","Klebsormidium nitens","(at1g12000 : 703.0) Phosphofructokinase family protein; FUNCTIONS IN: diphosphate-fructose-6-phosphate 1-phosphotransferase activity; INVOLVED IN: response to cadmium ion, glycolysis, photosynthesis; LOCATED IN: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex, cell wall, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase PfpB (InterPro:IPR011183), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: Phosphofructokinase family protein (TAIR:AT4G04040.1); Has 6357 Blast hits to 6276 proteins in 1942 species: Archae - 28; Bacteria - 4805; Metazoa - 61; Fungi - 134; Plants - 409; Viruses - 4; Other Eukaryotes - 916 (source: NCBI BLink). & (q41141|pfpb_ricco : 697.0) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) - Ricinus communis (Castor bean) & (reliability: 1406.0) &  (original description: no original description)","protein_coding"
"Kfl00481_0090","kfl00481_0090_v1.1","Klebsormidium nitens","(at4g02060 : 837.0) Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and  endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the  cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.; PROLIFERA (PRL); CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 7 (InterPro:IPR008050); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT5G44635.1). & (q43704|mcm3_maize : 242.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1674.0) &  (original description: no original description)","protein_coding"
"Kfl00487_0010","kfl00487_0010_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00499_0040","kfl00499_0040_v1.1","Klebsormidium nitens","(at3g58690 : 229.0) Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G54820.1); Has 119556 Blast hits to 118228 proteins in 3954 species: Archae - 119; Bacteria - 14059; Metazoa - 43160; Fungi - 10190; Plants - 33928; Viruses - 396; Other Eukaryotes - 17704 (source: NCBI BLink). & (o24585|cri4_maize : 196.0) Putative receptor protein kinase CRINKLY4 precursor (EC 2.7.11.1) - Zea mays (Maize) & (reliability: 440.0) &  (original description: no original description)","protein_coding"
"Kfl00502_0020","kfl00502_0020_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00523_0070","kfl00523_0070_v1.1","Klebsormidium nitens","(at5g58230 : 676.0) Encodes a WD-40 repeat containing protein that functions in chromatin assembly as part of the CAF1 and FIE complex. Mutants exhibit parthenogenetic development that includes proliferation of unfertilized endosperm and embryos. In heterozygous plants 50% of embryos abort. Of the aborted embryos the early aborted class are homozygous and the later aborting lass are heterozygotes in which the defective allele is maternally transmitted. Other phenotypes include defects in ovule morphogenesis and organ initiation,as well as increased levels of heterochromatic DNA. MSI1 is needed for the transition to flowering. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis. In the ovule, the MSI1 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization. MSI is biallelically expressed, the paternall allele is expressed in the endosperm and embryo and is not imprinted. MSI1 forms a complex with RBR1 that is required for activation of the imprinted genes FIS2 and FWA. This activation is mediated by MSI1/RBR1 mediated repression of MET1.; MULTICOPY SUPRESSOR OF IRA1 (MSI1); FUNCTIONS IN: protein binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus, chloroplast, chromatin remodeling complex, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone-binding protein RBBP4 (InterPro:IPR022052), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT2G16780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1352.0) &  (original description: no original description)","protein_coding"
"Kfl00567_0050","kfl00567_0050_v1.1","Klebsormidium nitens","(at2g14050 : 705.0) minichromosome maintenance 9 (MCM9); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA-dependent DNA replication initiation, DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT1G44900.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q43704|mcm3_maize : 258.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1410.0) &  (original description: no original description)","protein_coding"
"Kfl00572_0080","kfl00572_0080_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00609_0010","kfl00609_0010_v1.1","Klebsormidium nitens","(p49310|grp1_sinal : 126.0) Glycine-rich RNA-binding protein GRP1A - Sinapis alba (White mustard) (Brassica hirta) & (at2g21660 : 124.0) Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript.  Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway.   There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus.  A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).; GLYCINE RICH PROTEIN 7 (ATGRP7); FUNCTIONS IN: double-stranded DNA binding, RNA binding, single-stranded DNA binding; INVOLVED IN: in 12 processes; LOCATED IN: nucleus, chloroplast, peroxisome, cytoplasm; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: cold, circadian rhythm, and RNA binding 1 (TAIR:AT4G39260.3); Has 381 Blast hits to 381 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 191; Fungi - 60; Plants - 124; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). & (reliability: 248.0) &  (original description: no original description)","protein_coding"
"Kfl00635_0040","kfl00635_0040_v1.1","Klebsormidium nitens","(at4g18460 : 204.0) D-Tyr-tRNA(Tyr) deacylase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: D-amino acid catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-tyrosyl-tRNA(Tyr) deacylase (InterPro:IPR003732); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 408.0) &  (original description: no original description)","protein_coding"
"Kfl00635_0050","kfl00635_0050_v1.1","Klebsormidium nitens","(at1g63680 : 628.0) Encodes AtMurE, a homolog of the bacterial MurE that catalyze the ATP-dependent formation of UDP-N-acetylmuramic acid-tripeptide in bacterial peptidoglycan biosynthesis.  Localized to plastids.  AtMurE is involved in chloroplast biogenesis.; MURE; FUNCTIONS IN: acid-amino acid ligase activity, ATP binding, ligase activity; INVOLVED IN: chloroplast fission, chloroplast organization, biosynthetic process; LOCATED IN: chloroplast, nucleoid; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Mur ligase, central (InterPro:IPR013221), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (InterPro:IPR005761), Mur ligase, N-terminal (InterPro:IPR000713), Mur ligase, C-terminal (InterPro:IPR004101); Has 18234 Blast hits to 18170 proteins in 2587 species: Archae - 50; Bacteria - 13487; Metazoa - 59; Fungi - 43; Plants - 60; Viruses - 2; Other Eukaryotes - 4533 (source: NCBI BLink). & (reliability: 1256.0) &  (original description: no original description)","protein_coding"
"Kfl00651_0010","kfl00651_0010_v1.1","Klebsormidium nitens","(at4g34200 : 709.0) embryo sac development arrest 9 (EDA9); FUNCTIONS IN: ATP binding; INVOLVED IN: megagametogenesis; LOCATED IN: mitochondrion, chloroplast, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: D-3-phosphoglycerate dehydrogenase (InterPro:IPR006236), D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), D-3-phosphogylcerate Dehydrogenase (InterPro:IPR015508), Amino acid-binding ACT (InterPro:IPR002912), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-3-phosphoglycerate dehydrogenase (TAIR:AT3G19480.1); Has 30608 Blast hits to 30602 proteins in 2772 species: Archae - 489; Bacteria - 18520; Metazoa - 741; Fungi - 1175; Plants - 586; Viruses - 5; Other Eukaryotes - 9092 (source: NCBI BLink). & (p13443|dhgy_cucsa : 95.5) Glycerate dehydrogenase (EC 1.1.1.29) (NADH-dependent hydroxypyruvate reductase) (HPR) (GDH) - Cucumis sativus (Cucumber) & (reliability: 1418.0) &  (original description: no original description)","protein_coding"
"Kfl00662_0040","kfl00662_0040_v1.1","Klebsormidium nitens","(at1g16520 : 201.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56080.1); Has 243 Blast hits to 234 proteins in 69 species: Archae - 2; Bacteria - 2; Metazoa - 61; Fungi - 9; Plants - 125; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). & (reliability: 402.0) &  (original description: no original description)","protein_coding"
"Kfl00733_0010","kfl00733_0010_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00771_0050","kfl00771_0050_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00788_0010","kfl00788_0010_v1.1","Klebsormidium nitens","(at5g46280 : 794.0) MINICHROMOSOME MAINTENANCE 3 (MCM3); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 3 (InterPro:IPR008046); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT4G02060.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q43704|mcm3_maize : 643.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1588.0) &  (original description: no original description)","protein_coding"
"Kfl00812_0040","kfl00812_0040_v1.1","Klebsormidium nitens","(at5g25757 : 660.0) RNA polymerase I-associated factor PAF67; CONTAINS InterPro DOMAIN/s: RNA polymerase I-associated factor PAF67 (InterPro:IPR019382); BEST Arabidopsis thaliana protein match is: RNA polymerase I-associated factor PAF67 (TAIR:AT5G25754.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1320.0) &  (original description: no original description)","protein_coding"
"Kfl00912_0040","kfl00912_0040_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl01292_0010","kfl01292_0010_v1.1","Klebsormidium nitens","(at2g40550 : 368.0) Encodes a nuclear localized target of E2Fa-DPa, transcription factors controlling cell cycle progression. Required for sister chromatid cohesion and DNA repair.; E2F target gene 1 (ETG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: sister chromatid cohesion, postreplication repair, DNA replication; LOCATED IN: nuclear replisome, nucleus, chloroplast envelope, MCM complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2044, membrane (InterPro:IPR019140); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 736.0) &  (original description: no original description)","protein_coding"
"Kfl01328_0010","kfl01328_0010_v1.1","Klebsormidium nitens","(at2g21280 : 368.0) A nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system.; SULA; FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar nucleotide epimerase YfcH, putative (InterPro:IPR010099), NAD-dependent epimerase/dehydratase (InterPro:IPR001509), Domain of unknown function DUF1731, C-terminal (InterPro:IPR013549), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G33360.2); Has 4854 Blast hits to 4853 proteins in 1452 species: Archae - 38; Bacteria - 3329; Metazoa - 111; Fungi - 30; Plants - 185; Viruses - 0; Other Eukaryotes - 1161 (source: NCBI BLink). & (reliability: 736.0) &  (original description: no original description)","protein_coding"
"LOC_Os01g02860","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os01g13090","No alias","Oryza sativa","nucleic acid binding protein, putative, expressed","protein_coding"
"LOC_Os01g57020","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os01g60590","No alias","Oryza sativa","transposon protein, putative, Pong sub-class, expressed","protein_coding"
"LOC_Os01g64210","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os01g67890","No alias","Oryza sativa","OsMADS96 - MADS-box family gene with M-beta type-box, expressed","protein_coding"
"LOC_Os02g01940","No alias","Oryza sativa","transcription factor jumonji, putative, expressed","protein_coding"
"LOC_Os02g15250","No alias","Oryza sativa","late embryogenesis abundant domain-containing protein, putative, expressed","protein_coding"
"LOC_Os02g17560","No alias","Oryza sativa","hypothetical protein","protein_coding"
"LOC_Os02g45570","No alias","Oryza sativa","growth regulating factor protein, putative, expressed","protein_coding"
"LOC_Os02g47100","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os02g48220","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os02g49640","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os03g09040","No alias","Oryza sativa","hypothetical protein","protein_coding"
"LOC_Os03g10224","No alias","Oryza sativa","MT-A70 domain containing protein, expressed","protein_coding"
"LOC_Os03g13340","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os03g43980","No alias","Oryza sativa","AAT1, putative, expressed","protein_coding"
"LOC_Os03g46690","No alias","Oryza sativa","OsFBX105 - F-box domain containing protein, expressed","protein_coding"
"LOC_Os03g51680","No alias","Oryza sativa","fanconi anemia L, putative, expressed","protein_coding"
"LOC_Os03g53190","No alias","Oryza sativa","Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed","protein_coding"
"LOC_Os03g64260","No alias","Oryza sativa","AP2 domain containing protein, expressed","protein_coding"
"LOC_Os04g09990","No alias","Oryza sativa","hypothetical protein","protein_coding"
"LOC_Os04g10780","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os04g19750","No alias","Oryza sativa","OsFBL11 - F-box domain and LRR containing protein, expressed","protein_coding"
"LOC_Os04g25720","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os04g33980","No alias","Oryza sativa","transposon protein, putative, Mutator sub-class, expressed","protein_coding"
"LOC_Os04g35750","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os04g44880","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os04g45330","No alias","Oryza sativa","YABBY domain containing protein, putative, expressed","protein_coding"
"LOC_Os04g50020","No alias","Oryza sativa","heavy-metal-associated domain-containing protein, putative, expressed","protein_coding"
"LOC_Os04g54370","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os05g15120","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os05g15930","No alias","Oryza sativa","transposon protein, putative, unclassified, expressed","protein_coding"
"LOC_Os05g47970","No alias","Oryza sativa","microtubule associated protein, putative, expressed","protein_coding"
"LOC_Os06g01280","No alias","Oryza sativa","retrotransposon protein, putative, unclassified","protein_coding"
"LOC_Os06g17460","No alias","Oryza sativa","fasciclin domain containing protein, expressed","protein_coding"
"LOC_Os06g23970","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os06g38710","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os06g47550","No alias","Oryza sativa","cadmium/zinc-transporting ATPase, putative, expressed","protein_coding"
"LOC_Os07g02290","No alias","Oryza sativa","OsFBX208 - F-box domain containing protein, expressed","protein_coding"
"LOC_Os07g18960","No alias","Oryza sativa","GCRP14 - Glycine and cysteine rich family protein precursor, putative, expressed","protein_coding"
"LOC_Os07g32060","No alias","Oryza sativa","UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed","protein_coding"
"LOC_Os08g27190","No alias","Oryza sativa","OsFBX288 - F-box domain containing protein, expressed","protein_coding"
"LOC_Os08g44230","No alias","Oryza sativa","zinc finger family protein, putative, expressed","protein_coding"
"LOC_Os08g45200","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os09g11440","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os09g18010","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os09g19550","No alias","Oryza sativa","SNARE domain containing protein, putative, expressed","protein_coding"
"LOC_Os09g21890","No alias","Oryza sativa","retrotransposon protein, putative, unclassified, expressed","protein_coding"
"LOC_Os09g31190","No alias","Oryza sativa","slowmo homolog, putative, expressed","protein_coding"
"LOC_Os10g10980","No alias","Oryza sativa","OsFBX379 - F-box domain containing protein, expressed","protein_coding"
"LOC_Os10g25990","No alias","Oryza sativa","retrotransposon protein, putative, unclassified, expressed","protein_coding"
"LOC_Os11g03160","No alias","Oryza sativa","glycosyl transferase, family 8, putative, expressed","protein_coding"
"LOC_Os11g07500","No alias","Oryza sativa","DSHCT domain containing protein, expressed","protein_coding"
"LOC_Os11g29380","No alias","Oryza sativa","MCM2 - Putative minichromosome maintenance MCM complex subunit 2, expressed","protein_coding"
"LOC_Os11g29520","No alias","Oryza sativa","NBS-LRR disease resistance protein, putative, expressed","protein_coding"
"LOC_Os11g32650","No alias","Oryza sativa","chalcone synthase, putative, expressed","protein_coding"
"LOC_Os12g01310","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os12g27680","No alias","Oryza sativa","retrotransposon, putative, centromere-specific, expressed","protein_coding"
"LOC_Os12g29040","No alias","Oryza sativa","LTPL111 - Protease inhibitor/seed storage/LTP family protein precursor, expressed","protein_coding"
"LOC_Os12g36310","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os12g41950","No alias","Oryza sativa","auxin response factor, putative, expressed","protein_coding"
"Mp1g05690.1","No alias","Marchantia polymorpha","TAC17 cofactor of plastid-encoded RNA polymerase","protein_coding"
"Mp1g08590.1","No alias","Marchantia polymorpha","component EH of TPLATE AP-2 co-adaptor complex","protein_coding"
"Mp1g12450.1","No alias","Marchantia polymorpha","component beta type-6 of 26S proteasome","protein_coding"
"Mp1g16290.1","No alias","Marchantia polymorpha","4-diphosphocytidyl-2-C-methyl-D-erythritol kinase","protein_coding"
"Mp1g16850.1","No alias","Marchantia polymorpha","component LHCb4 of LHC-II complex","protein_coding"
"Mp1g17650.1","No alias","Marchantia polymorpha","component MCM3 of MCM replicative DNA helicase complex","protein_coding"
"Mp1g20500.1","No alias","Marchantia polymorpha","3-isopropylmalate dehydrogenase. methylthioalkylmalate dehydrogenase","protein_coding"
"Mp1g21340.1","No alias","Marchantia polymorpha","protoporphyrinogen IX oxidase","protein_coding"
"Mp1g24020.1","No alias","Marchantia polymorpha","component PsaE of PS-I complex","protein_coding"
"Mp2g02600.1","No alias","Marchantia polymorpha","component MCM7 of MCM replicative DNA helicase complex","protein_coding"
"Mp2g11980.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp2g15420.1","No alias","Marchantia polymorpha","component LHCa1 of LHC-I complex","protein_coding"
"Mp2g18290.1","No alias","Marchantia polymorpha","component ORC5 of origin recognition complex","protein_coding"
"Mp3g00100.1","No alias","Marchantia polymorpha","triosephosphate isomerase. triosephosphate isomerase","protein_coding"
"Mp3g00130.1","No alias","Marchantia polymorpha","component MCM2 of MCM replicative DNA helicase complex","protein_coding"
"Mp3g00810.1","No alias","Marchantia polymorpha","plastidial glucanotransferase","protein_coding"
"Mp3g02380.1","No alias","Marchantia polymorpha","component MCM4 of MCM replicative DNA helicase complex","protein_coding"
"Mp3g07840.1","No alias","Marchantia polymorpha","component LHCa4 of LHC-I complex","protein_coding"
"Mp3g13360.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp3g17240.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp4g00930.1","No alias","Marchantia polymorpha","component LHCa3 of LHC-I complex","protein_coding"
"Mp4g06880.1","No alias","Marchantia polymorpha","component PsaK of PS-I complex","protein_coding"
"Mp4g10900.1","No alias","Marchantia polymorpha","component LHCb5 of LHC-II complex","protein_coding"
"Mp4g14930.1","No alias","Marchantia polymorpha","component MCM6 of MCM replicative DNA helicase complex","protein_coding"
"Mp5g04200.1","No alias","Marchantia polymorpha","component PsaD of PS-I complex","protein_coding"
"Mp5g10440.1","No alias","Marchantia polymorpha","Putative metallophosphoesterase At3g03305 OS=Arabidopsis thaliana (sp|q0wvz1|y3330_arath : 404.0)","protein_coding"
"Mp5g13220.1","No alias","Marchantia polymorpha","subfamily ABCC transporter","protein_coding"
"Mp5g20200.1","No alias","Marchantia polymorpha","scaffold protein NFU of plastidial SUF system transfer phase","protein_coding"
"Mp5g24300.1","No alias","Marchantia polymorpha","component MED17 of head module of MEDIATOR transcription co-activator complex","protein_coding"
"Mp6g04050.1","No alias","Marchantia polymorpha","P2B-type calcium cation-transporting ATPase (ACA)","protein_coding"
"Mp6g10010.1","No alias","Marchantia polymorpha","bifunctional homoserine dehydrogenase and aspartate kinase","protein_coding"
"Mp6g15630.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp7g02800.1","No alias","Marchantia polymorpha","Probable protein phosphatase 2C 11 OS=Arabidopsis thaliana (sp|q8vzn9|p2c11_arath : 142.0)","protein_coding"
"Mp7g03180.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp7g16030.1","No alias","Marchantia polymorpha","component PsbTn of PS-II complex","protein_coding"
"Mp8g13180.1","No alias","Marchantia polymorpha","component LHCa2 of LHC-I complex","protein_coding"
"Mp8g17190.1","No alias","Marchantia polymorpha","2-keto acid transporter (BAT)","protein_coding"
"Mp8g17330.1","No alias","Marchantia polymorpha","acyl carrier protein (ptACP)","protein_coding"
"Potri.001G070500","No alias","Populus trichocarpa","minichromosome maintenance (MCM2/3/5) family protein","protein_coding"
"Pp1s100_253V6","No alias","Physcomitrella patens","T5J17.30; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s106_50V6","No alias","Physcomitrella patens","pap associated domain containing 5","protein_coding"
"Pp1s110_49V6","No alias","Physcomitrella patens","transcription elongation factor s-","protein_coding"
"Pp1s114_181V6","No alias","Physcomitrella patens","poly (adp-ribose) polymerase member 1","protein_coding"
"Pp1s131_142V6","No alias","Physcomitrella patens","cell division control protein 15","protein_coding"
"Pp1s134_26V6","No alias","Physcomitrella patens","small nuclear ribonucleoprotein polypeptide a","protein_coding"
"Pp1s143_174V6","No alias","Physcomitrella patens","glucose-6-phosphate translocator","protein_coding"
"Pp1s144_26V6","No alias","Physcomitrella patens","pentatricopeptide repeat-containing","protein_coding"
"Pp1s151_75V6","No alias","Physcomitrella patens","asc1-like protein 1","protein_coding"
"Pp1s15_446V6","No alias","Physcomitrella patens","hypothetical protein, conserved [Cyanidioschyzon merolae]","protein_coding"
"Pp1s161_120V6","No alias","Physcomitrella patens","rvde1","protein_coding"
"Pp1s168_89V6","No alias","Physcomitrella patens","cysteine desulfurase","protein_coding"
"Pp1s171_14V6","No alias","Physcomitrella patens","subfamily member 13","protein_coding"
"Pp1s187_18V6","No alias","Physcomitrella patens","hypothetical protein [Dictyostelium discoideum]","protein_coding"
"Pp1s194_77V6","No alias","Physcomitrella patens","origin recognition complex subunit","protein_coding"
"Pp1s19_89V6","No alias","Physcomitrella patens","F2N1.34; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s210_36V6","No alias","Physcomitrella patens","minichromosome maintenance protein","protein_coding"
"Pp1s212_83V6","No alias","Physcomitrella patens","clasp (clip-associated protein) binding","protein_coding"
"Pp1s221_85V6","No alias","Physcomitrella patens","T16L1.140; dynamin-like protein 2a (ADL2a) [Arabidopsis thaliana]","protein_coding"
"Pp1s236_54V6","No alias","Physcomitrella patens","PREDICTED: hypothetical protein [Vitis vinifera]","protein_coding"
"Pp1s237_18V6","No alias","Physcomitrella patens","chromosome-associated kinesin","protein_coding"
"Pp1s248_17V6","No alias","Physcomitrella patens","F24K9.26; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s270_51V6","No alias","Physcomitrella patens","2-oxoglutarate e1 subunit","protein_coding"
"Pp1s278_42V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s28_266V6","No alias","Physcomitrella patens","dna replication licensing factor","protein_coding"
"Pp1s307_72V6","No alias","Physcomitrella patens","radical sam cfr family","protein_coding"
"Pp1s324_22V6","No alias","Physcomitrella patens","phospholipase d","protein_coding"
"Pp1s326_15V6","No alias","Physcomitrella patens","T5I7.16; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s33_280V6","No alias","Physcomitrella patens","T26J12.19; armadillo/beta-catenin repeat family protein [Arabidopsis thaliana]","protein_coding"
"Pp1s355_49V6","No alias","Physcomitrella patens","dna replication licensing factor mcm5","protein_coding"
"Pp1s35_209V6","No alias","Physcomitrella patens","tip120 protein","protein_coding"
"Pp1s35_350V6","No alias","Physcomitrella patens","pentatricopeptide repeat-containing","protein_coding"
"Pp1s370_6V6","No alias","Physcomitrella patens","outer membrane lipoprotein","protein_coding"
"Pp1s38_401V6","No alias","Physcomitrella patens","histidyl-trna synthetase","protein_coding"
"Pp1s41_177V6","No alias","Physcomitrella patens","aldehyde dehydrogenase","protein_coding"
"Pp1s42_88V6","No alias","Physcomitrella patens","T9L3.90; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s469_14V6","No alias","Physcomitrella patens","POLR2A; polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [EC:2.7.7.6] [KO:K03006] [Homo sapiens]","protein_coding"
"Pp1s51_69V6","No alias","Physcomitrella patens","hypothetical protein [Dictyostelium discoideum]","protein_coding"
"Pp1s52_58V6","No alias","Physcomitrella patens","gamma complex associated protein 5","protein_coding"
"Pp1s53_93V6","No alias","Physcomitrella patens","serine threonine kinase 36partial","protein_coding"
"Pp1s54_273V6","No alias","Physcomitrella patens","cellular apoptosis susceptibility protein","protein_coding"
"Pp1s61_131V6","No alias","Physcomitrella patens","acyltransferase like 1","protein_coding"
"Pp1s62_38V6","No alias","Physcomitrella patens","beach domain-containing protein","protein_coding"
"Pp1s62_89V6","No alias","Physcomitrella patens","rhomboid family protein","protein_coding"
"Pp1s68_169V6","No alias","Physcomitrella patens","arogenate prephenate dehydratase","protein_coding"
"Pp1s79_21V6","No alias","Physcomitrella patens","unknown [Picea sitchensis]","protein_coding"
"Pp1s7_190V6","No alias","Physcomitrella patens","dna methyltransferase 1-associated protein 1","protein_coding"
"Pp1s80_86V6","No alias","Physcomitrella patens","transferring glycosyl groups","protein_coding"
"Pp1s8_180V6","No alias","Physcomitrella patens","translocated promoter region (to activated met oncogene)","protein_coding"
"Pp1s92_91V6","No alias","Physcomitrella patens","uncharacterized protein kiaa0406","protein_coding"
"Pp1s98_148V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s9_156V6","No alias","Physcomitrella patens","minichromosome maintenance 3","protein_coding"
"PSME_00000094-RA","No alias","Pseudotsuga menziesii","(at1g44900 : 978.0) Encodes MCM2 (MINICHROMOSOME MAINTENANCE 2), a protein essential to embryo development. Overexpression results in altered root meristem function.; MINICHROMOSOME MAINTENANCE 2 (MCM2); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: nuclear chromatin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 2 (InterPro:IPR008045), MCM protein 2, N-terminal (InterPro:IPR021092); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1). & (q43704|mcm3_maize : 270.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1956.0) &  (original description: no original description)","protein_coding"
"PSME_00002158-RA","No alias","Pseudotsuga menziesii","(at2g16440 : 978.0) MINICHROMOSOME MAINTENANCE 4 (MCM4); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 4 (InterPro:IPR008047); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT5G44635.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q43704|mcm3_maize : 300.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1956.0) &  (original description: no original description)","protein_coding"
"PSME_00016514-RA","No alias","Pseudotsuga menziesii","(at2g07690 : 870.0) Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and  endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the  cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.; MINICHROMOSOME MAINTENANCE 5 (MCM5); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin, nucleus, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 5 (InterPro:IPR008048); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1). & (q43704|mcm3_maize : 165.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1740.0) &  (original description: no original description)","protein_coding"
"PSME_00016582-RA","No alias","Pseudotsuga menziesii","(at2g01820 : 664.0) Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: pollen development; LOCATED IN: plasma membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: transmembrane kinase 1 (TAIR:AT1G66150.1); Has 179395 Blast hits to 141441 proteins in 4928 species: Archae - 173; Bacteria - 19044; Metazoa - 57542; Fungi - 11766; Plants - 68071; Viruses - 436; Other Eukaryotes - 22363 (source: NCBI BLink). & (o24585|cri4_maize : 181.0) Putative receptor protein kinase CRINKLY4 precursor (EC 2.7.11.1) - Zea mays (Maize) & (reliability: 1328.0) &  (original description: no original description)","protein_coding"
"PSME_00016931-RA","No alias","Pseudotsuga menziesii","(at2g47850 : 171.0) Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 1724 Blast hits to 1003 proteins in 159 species: Archae - 0; Bacteria - 7; Metazoa - 368; Fungi - 218; Plants - 971; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink). & (q5nav3|zfnl3_orysa : 163.0) Zinc finger CCCH domain-containing protein ZFN-like 3 - Oryza sativa (Rice) & (reliability: 308.0) &  (original description: no original description)","protein_coding"
"PSME_00017488-RA","No alias","Pseudotsuga menziesii","(at4g36360 : 1137.0) putative beta-galactosidase (BGAL3 gene); beta-galactosidase 3 (BGAL3); FUNCTIONS IN: beta-galactosidase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta galactosidase 1 (TAIR:AT3G13750.1); Has 2405 Blast hits to 2192 proteins in 479 species: Archae - 15; Bacteria - 1021; Metazoa - 436; Fungi - 211; Plants - 628; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). & (p45582|bgal_aspof : 1098.0) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) - Asparagus officinalis (Garden asparagus) & (reliability: 2274.0) &  (original description: no original description)","protein_coding"
"PSME_00024602-RA","No alias","Pseudotsuga menziesii","(at1g30690 : 421.0) Sec14p-like phosphatidylinositol transfer family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), GOLD (InterPro:IPR009038), Cellular retinaldehyde binding/alpha-tocopherol transport (InterPro:IPR001071), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G09160.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 842.0) &  (original description: no original description)","protein_coding"
"PSME_00033686-RA","No alias","Pseudotsuga menziesii","(at2g36870 : 309.0) xyloglucan endotransglucosylase/hydrolase 32 (XTH32); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endo-transglycosylase-related 8 (TAIR:AT3G44990.1). & (p93349|xth_tobac : 183.0) Probable xyloglucan endotransglucosylase/hydrolase protein precursor (EC 2.4.1.207) - Nicotiana tabacum (Common tobacco) & (reliability: 618.0) &  (original description: no original description)","protein_coding"
"PSME_00043726-RA","No alias","Pseudotsuga menziesii","(at1g80760 : 300.0) Encodes a protein with boron transporter activity. It helps to preferentially direct boron to young developing tissues in the shoot, such as immature leaves, under low boron conditions. This boron channel appears to be impermeable to water, unlike the closely related NIP5;1 boron transporter. This protein also allows the transport of glycerol, urea, and formimide but not larger uncharged solutes such as arabitol and sucrose when it is expressed heterologously.; NOD26-like intrinsic protein 6;1 (NIP6;1); CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: NOD26-like intrinsic protein 5;1 (TAIR:AT4G10380.1); Has 10266 Blast hits to 10221 proteins in 2131 species: Archae - 103; Bacteria - 5136; Metazoa - 1354; Fungi - 440; Plants - 2031; Viruses - 2; Other Eukaryotes - 1200 (source: NCBI BLink). & (p08995|no26_soybn : 206.0) Nodulin-26 (N-26) - Glycine max (Soybean) & (reliability: 600.0) &  (original description: no original description)","protein_coding"
"PSME_00052218-RA","No alias","Pseudotsuga menziesii","(at1g60390 : 486.0) polygalacturonase 1 (PG1); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: polygalacturonase 2 (TAIR:AT1G70370.2); Has 3094 Blast hits to 2364 proteins in 384 species: Archae - 8; Bacteria - 697; Metazoa - 473; Fungi - 328; Plants - 614; Viruses - 4; Other Eukaryotes - 970 (source: NCBI BLink). & (reliability: 972.0) &  (original description: no original description)","protein_coding"
"Seita.1G203200.1","No alias","Setaria italica ","regulatory factor *(RBP45/47) of mRNA stress granule formation","protein_coding"
"Seita.1G352100.1","No alias","Setaria italica ","component *(MCM5) of MCM replicative DNA helicase complex","protein_coding"
"Seita.1G356900.1","No alias","Setaria italica ","sliding clamp protein *(PCNA)","protein_coding"
"Seita.1G376600.1","No alias","Setaria italica ","component *(RPA2) of RPA presynaptic filament assembly factor complex & component *(RPA2) of single-stranded-DNA binding RPA complex","protein_coding"
"Seita.3G082800.1","No alias","Setaria italica ","component *(MCM6) of MCM replicative DNA helicase complex","protein_coding"
"Seita.3G205800.1","No alias","Setaria italica ","component *(MCM3) of MCM replicative DNA helicase complex","protein_coding"
"Seita.3G241400.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.3G306100.1","No alias","Setaria italica ","EC_4.2 carbon-oxygen lyase & enolase","protein_coding"
"Seita.3G335500.1","No alias","Setaria italica ","component *(MCM7) of MCM replicative DNA helicase complex","protein_coding"
"Seita.4G012100.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.4G045900.1","No alias","Setaria italica ","component *(ORC1) of origin recognition complex","protein_coding"
"Seita.5G192100.1","No alias","Setaria italica ","component *(MCM4) of MCM replicative DNA helicase complex","protein_coding"
"Seita.7G065800.1","No alias","Setaria italica ","regulatory protein ELP1 of PRC1 histone mono-ubiquitination complex","protein_coding"
"Seita.7G073600.1","No alias","Setaria italica ","primase component *(POLA3) of DNA polymerase alpha complex","protein_coding"
"Seita.8G121500.1","No alias","Setaria italica ","component *(MCM2) of MCM replicative DNA helicase complex","protein_coding"
"Seita.9G012300.1","No alias","Setaria italica ","component *(NUF2) of NDC80 outer kinetochore complex","protein_coding"
"Seita.9G145300.1","No alias","Setaria italica ","deoxyuridine triphosphatase *(DUT) & EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Seita.9G319400.1","No alias","Setaria italica ","CDC7 protein kinase & adherin-recruiting kinase *(CDC7) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Sobic.001G156600.1","No alias","Sorghum bicolor ","DUF26 protein kinase & EC_2.7 transferase transferring phosphorus-containing group & L-lectin protein kinase","protein_coding"
"Sobic.001G238900.1","No alias","Sorghum bicolor ","substrate adaptor *(FBS) of SCF E3 ubiquitin ligase complex","protein_coding"
"Sobic.001G295400.1","No alias","Sorghum bicolor ","CDC7 protein kinase & adherin-recruiting kinase *(CDC7) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Sobic.001G323400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G327400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G402600.2","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G409200.1","No alias","Sorghum bicolor ","AS2/LOB-type transcription factor","protein_coding"
"Sobic.001G429000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G435000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G456500.1","No alias","Sorghum bicolor ","component *(RPA1) of single-stranded-DNA binding RPA complex & component *(RPA1) of RPA presynaptic filament assembly factor complex","protein_coding"
"Sobic.001G520200.1","No alias","Sorghum bicolor ","phosphoethanolamine transferase-II *(PIG-F)","protein_coding"
"Sobic.002G007800.1","No alias","Sorghum bicolor ","histone demethylase *(PKDM7)","protein_coding"
"Sobic.002G021200.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(DDM1)","protein_coding"
"Sobic.002G113400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G214700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G280100.1","No alias","Sorghum bicolor ","cell cycle CDC45-recruitment factor *(MCM10)","protein_coding"
"Sobic.002G290000.2","No alias","Sorghum bicolor ","dsDNA helicase *(FANCJ)","protein_coding"
"Sobic.002G328500.2","No alias","Sorghum bicolor ","DUF26 protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Sobic.002G351400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.003G038400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.003G055600.1","No alias","Sorghum bicolor ","associated component *(ETG1) of MCM replicative DNA helicase complex","protein_coding"
"Sobic.003G137300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.003G183700.1","No alias","Sorghum bicolor ","component *(MCM4) of MCM replicative DNA helicase complex","protein_coding"
"Sobic.003G387600.1","No alias","Sorghum bicolor ","component *(CAF1a/FAS1) of CAF1 histone chaperone complex","protein_coding"
"Sobic.004G174800.2","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.004G321400.1","No alias","Sorghum bicolor ","chromatin stabilizing factor *(TSK)","protein_coding"
"Sobic.004G331600.1","No alias","Sorghum bicolor ","component *(MCM5) of MCM replicative DNA helicase complex","protein_coding"
"Sobic.004G355500.1","No alias","Sorghum bicolor ","component *(RPA2) of RPA presynaptic filament assembly factor complex & component *(RPA2) of single-stranded-DNA binding RPA complex","protein_coding"
"Sobic.005G024400.1","No alias","Sorghum bicolor ","substrate adaptor *(HTD1/DWD1) of CUL4-based E3 ubiquitin ligase complex","protein_coding"
"Sobic.005G110523.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.005G110535.1","No alias","Sorghum bicolor ","component *(MCM2) of MCM replicative DNA helicase complex","protein_coding"
"Sobic.005G157300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.005G169400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.006G029300.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(Rad5)","protein_coding"
"Sobic.006G051000.3","No alias","Sorghum bicolor ","primase component *(POLA3) of DNA polymerase alpha complex","protein_coding"
"Sobic.006G095000.2","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.006G188600.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.006G198500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.006G200000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.006G208300.2","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.006G214000.1","No alias","Sorghum bicolor ","DNA chromomethylase *(CMT)","protein_coding"
"Sobic.007G000500.1","No alias","Sorghum bicolor ","DNA bending architectural protein *(HMG-B)","protein_coding"
"Sobic.007G008300.1","No alias","Sorghum bicolor ","component *(CAF1b/FAS2) of CAF1 histone chaperone complex","protein_coding"
"Sobic.007G071100.1","No alias","Sorghum bicolor ","cold-responsive protein kinase *(CRPK) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Sobic.007G089300.1","No alias","Sorghum bicolor ","DUF26 protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Sobic.007G150700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.007G187700.1","No alias","Sorghum bicolor ","regulatory protein (RBR) of cell cycle interphase","protein_coding"
"Sobic.008G129200.1","No alias","Sorghum bicolor ","component *(MCM7) of MCM replicative DNA helicase complex","protein_coding"
"Sobic.008G156600.1","No alias","Sorghum bicolor ","substrate adaptor *(FBL17) of SCF E3 ubiquitin ligase complex & regulatory protein *(FBL17) of cell cycle","protein_coding"
"Sobic.009G076900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.009G087000.1","No alias","Sorghum bicolor ","component *(MCM6) of MCM replicative DNA helicase complex","protein_coding"
"Sobic.009G109300.1","No alias","Sorghum bicolor ","primase component *(POLA4) of DNA polymerase alpha complex","protein_coding"
"Sobic.009G172950.1","No alias","Sorghum bicolor ","component *(MCM3) of MCM replicative DNA helicase complex","protein_coding"
"Sobic.009G218700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.009G241500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.010G013100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.010G028700.2","No alias","Sorghum bicolor ","RNA editing factor *(COD1)","protein_coding"
"Sobic.010G038200.1","No alias","Sorghum bicolor ","helicase auxiliary factor *(CDT1)","protein_coding"
"Sobic.010G062900.1","No alias","Sorghum bicolor ","hydroxyproline-O-arabinosyltransferase *(HPAT) & hydroxyproline beta-1,4-arabinosyltransferase *(HPAT)","protein_coding"
"Sobic.010G103700.2","No alias","Sorghum bicolor ","replication fork tethering component *(POLA2) of DNA polymerase alpha complex","protein_coding"
"Sobic.010G147700.1","No alias","Sorghum bicolor ","regulatory protein ELP1 of PRC1 histone mono-ubiquitination complex","protein_coding"
"Sobic.010G174900.1","No alias","Sorghum bicolor ","SD-2 protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Sobic.010G232700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Solyc01g006140","No alias","Solanum lycopersicum","CDT1-like protein a, chloroplastic (AHRD V3.3 *** A0A0B0P9Z8_GOSAR)","protein_coding"
"Solyc01g006820","No alias","Solanum lycopersicum","LOW QUALITY:basic helix-loop-helix (bHLH) DNA-binding superfamily protein (AHRD V3.3 --* AT5G57150.5)","protein_coding"
"Solyc01g079500","No alias","Solanum lycopersicum","Vps51/Vps67 family (components of vesicular transport) protein (AHRD V3.3 *** AT4G02030.1)","protein_coding"
"Solyc01g086690","No alias","Solanum lycopersicum","LOW QUALITY:Sister chromatid cohesion 1 protein 3 (AHRD V3.3 *** W9R9I5_9ROSA)","protein_coding"
"Solyc01g090800","No alias","Solanum lycopersicum","cyclinU2_1","protein_coding"
"Solyc01g091340","No alias","Solanum lycopersicum","Peptidyl-prolyl cis-trans isomerase (AHRD V3.3 *-* A0A0K9P1Y7_ZOSMR)","protein_coding"
"Solyc01g099030","No alias","Solanum lycopersicum","GDSL esterase/lipase (AHRD V3.3 *** A0A0B2PL43_GLYSO)","protein_coding"
"Solyc01g101030","No alias","Solanum lycopersicum","FACT complex subunit SPT16 (AHRD V3.3 *** W9RSN6_9ROSA)","protein_coding"
"Solyc01g110130","No alias","Solanum lycopersicum","DNA helicase (AHRD V3.3 *** K4B3M6_SOLLC)","protein_coding"
"Solyc02g070500","No alias","Solanum lycopersicum","LOW QUALITY:DUF538 family protein (Protein of unknown function, DUF538) (AHRD V3.3 *** AT4G24130.1)","protein_coding"
"Solyc02g070780","No alias","Solanum lycopersicum","DNA helicase (AHRD V3.3 *** K4B859_SOLLC)","protein_coding"
"Solyc02g080480","No alias","Solanum lycopersicum","Protein DETOXIFICATION (AHRD V3.3 *** K4B9R9_SOLLC)","protein_coding"
"Solyc02g080550","No alias","Solanum lycopersicum","SH3 domain-binding protein 1, putative (AHRD V3.3 *** A0A061F5K7_THECC)","protein_coding"
"Solyc02g082180","No alias","Solanum lycopersicum","DNA helicase (AHRD V3.3 *** K4BA88_SOLLC)","protein_coding"
"Solyc02g084200","No alias","Solanum lycopersicum","Zinc finger transcription factor 19","protein_coding"
"Solyc02g092240","No alias","Solanum lycopersicum","DUF4228 domain protein (AHRD V3.3 *** G7JF67_MEDTR)","protein_coding"
"Solyc03g007800","No alias","Solanum lycopersicum","Protein timeless like (AHRD V3.3 *** A0A0B2QAC2_GLYSO)","protein_coding"
"Solyc03g082860","No alias","Solanum lycopersicum","Histone-lysine N-methyltransferase (AHRD V3.3 *** W9S1W1_9ROSA)","protein_coding"
"Solyc03g115230","No alias","Solanum lycopersicum","Solanum lycopersicum heat shock protein","protein_coding"
"Solyc03g120090","No alias","Solanum lycopersicum","Pyridoxin biosynthesis protein PDX1, putative (AHRD V3.3 *** B9RQN9_RICCO)","protein_coding"
"Solyc03g121610","No alias","Solanum lycopersicum","Protein kinase (AHRD V3.3 *** E5GCB1_CUCME)","protein_coding"
"Solyc03g123720","No alias","Solanum lycopersicum","O-fucosyltransferase family protein (AHRD V3.3 *** AT5G50420.1)","protein_coding"
"Solyc04g011440","No alias","Solanum lycopersicum","ethylene-responsive heat shock protein cognate 70","protein_coding"
"Solyc04g074330","No alias","Solanum lycopersicum","Glycosyltransferase (AHRD V3.3 *** K4BTX1_SOLLC)","protein_coding"
"Solyc04g078200","No alias","Solanum lycopersicum","Gibberellin regulated protein (AHRD V3.3 *-* A0A103XWU1_CYNCS)","protein_coding"
"Solyc04g080200","No alias","Solanum lycopersicum","Endoribonuclease Dicer-like protein (AHRD V3.3 *-* A0A0B0MLI3_GOSAR)","protein_coding"
"Solyc04g081400","No alias","Solanum lycopersicum","Phosphotransferase (AHRD V3.3 *** Q4PS96_SOLLC)","protein_coding"
"Solyc05g008540","No alias","Solanum lycopersicum","Origin recognition complex subunit 4 (AHRD V3.3 *** K4BX28_SOLLC)","protein_coding"
"Solyc05g017950","No alias","Solanum lycopersicum","anion:sodium symporter","protein_coding"
"Solyc05g055780","No alias","Solanum lycopersicum","DNA repair protein RecA, putative (AHRD V3.3 *** A0A072V2Z1_MEDTR)","protein_coding"
"Solyc06g008510","No alias","Solanum lycopersicum","CDT1-like protein a, chloroplastic (AHRD V3.3 *** A0A0B0P9Z8_GOSAR)","protein_coding"
"Solyc06g011380","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc06g011400","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc06g053680","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc06g054070","No alias","Solanum lycopersicum","Lipid transfer protein (AHRD V3.3 *** G7K520_MEDTR)","protein_coding"
"Solyc06g069230","No alias","Solanum lycopersicum","DNA mismatch repair protein (AHRD V3.3 *** Q6DQL7_PETHY)","protein_coding"
"Solyc06g069820","No alias","Solanum lycopersicum","DUF674 family protein (AHRD V3.3 *** A0A072TP22_MEDTR)","protein_coding"
"Solyc07g005020","No alias","Solanum lycopersicum","DNA helicase (AHRD V3.3 *** K4CAX4_SOLLC)","protein_coding"
"Solyc07g007920","No alias","Solanum lycopersicum","Telomere-associated protein RIF1, putative (AHRD V3.3 *** A0A061GVQ3_THECC)","protein_coding"
"Solyc07g018130","No alias","Solanum lycopersicum","ABC transporter B family protein (AHRD V3.3 *** G7JF16_MEDTR)","protein_coding"
"Solyc07g018300","No alias","Solanum lycopersicum","Replication protein A subunit (AHRD V3.3 *** A0A1D1Z493_9ARAE)","protein_coding"
"Solyc07g054410","No alias","Solanum lycopersicum","LOW QUALITY:Micronuclear linker histone polyprotein-like protein (AHRD V3.3 *** A0A061E2Z9_THECC)","protein_coding"
"Solyc07g055750","No alias","Solanum lycopersicum","Strictosidine synthase-like protein (AHRD V3.3 *** A7WPL3_TOBAC)","protein_coding"
"Solyc08g042100","No alias","Solanum lycopersicum","U-box domain-containing 12 (AHRD V3.3 *** A0A0B0MP20_GOSAR)","protein_coding"
"Solyc08g060920","No alias","Solanum lycopersicum","IDS4-like","protein_coding"
"Solyc08g076610","No alias","Solanum lycopersicum","Cell cycle checkpoint protein RAD1 (AHRD V3.3 *-* W9RDU4_9ROSA)","protein_coding"
"Solyc08g080010","No alias","Solanum lycopersicum","Subtilisin-like protease (AHRD V3.3 *** A0A151SNY0_CAJCA)","protein_coding"
"Solyc08g080540","No alias","Solanum lycopersicum","SolycHsfB2b","protein_coding"
"Solyc08g082200","No alias","Solanum lycopersicum","DNA primase (AHRD V3.3 *** K4CPL6_SOLLC)","protein_coding"
"Solyc09g061310","No alias","Solanum lycopersicum","PPPDE putative thiol peptidase family protein (AHRD V3.3 *** AT3G07090.2)","protein_coding"
"Solyc09g074250","No alias","Solanum lycopersicum","Protein kinase family protein (AHRD V3.3 *** AT5G35960.1)","protein_coding"
"Solyc09g089650","No alias","Solanum lycopersicum","UMP-CMP kinase (AHRD V3.3 --* A0A0D2U7F1_GOSRA)","protein_coding"
"Solyc09g091280","No alias","Solanum lycopersicum","Retinoblastoma-related protein 1 (AHRD V3.3 *** H9E8V1_SOLLC)","protein_coding"
"Solyc09g098170","No alias","Solanum lycopersicum","Ras family (AHRD V3.3 *** A0A191UMR0_SOLDE)","protein_coding"
"Solyc10g005970","No alias","Solanum lycopersicum","phospholipase-like protein (PEARLI 4) family protein (AHRD V3.3 --* AT2G20960.2)","protein_coding"
"Solyc10g007400","No alias","Solanum lycopersicum","DNA polymerase delta subunit 3 (AHRD V3.3 *** A0A0B0NMF9_GOSAR)","protein_coding"
"Solyc10g009370","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc10g048190","No alias","Solanum lycopersicum","Thymocyte nuclear protein 1 (AHRD V3.3 *** A0A0B2RF18_GLYSO)","protein_coding"
"Solyc10g078470","No alias","Solanum lycopersicum","Tryptophan/tyrosine permease (AHRD V3.3 *** AT2G33260.2)","protein_coding"
"Solyc10g078930","No alias","Solanum lycopersicum","Activator of 90 kDa heat shock ATPase (AHRD V3.3 *** A0A0B0MWI3_GOSAR)","protein_coding"
"Solyc11g013270","No alias","Solanum lycopersicum","O-fucosyltransferase family protein (AHRD V3.3 *** AT1G38131.1)","protein_coding"
"Solyc11g040120","No alias","Solanum lycopersicum","DNA helicase (AHRD V3.3 *** M0ZQ54_SOLTU)","protein_coding"
"Solyc12g011050","No alias","Solanum lycopersicum","RNA binding protein, putative (AHRD V3.3 *** B9SEZ1_RICCO)","protein_coding"
"Solyc12g011340","No alias","Solanum lycopersicum","RNA-binding protein, putative (AHRD V3.3 *** B9SVC9_RICCO)","protein_coding"
"Solyc12g057020","No alias","Solanum lycopersicum","Carbohydrate esterase plant-like protein (AHRD V3.3 *** G7J707_MEDTR)","protein_coding"
"Solyc12g089050","No alias","Solanum lycopersicum","LOW QUALITY:MBOAT (Membrane bound O-acyl transferase) family protein, putative (AHRD V3.3 *** G7K4B1_MEDTR)","protein_coding"
"Solyc12g098960","No alias","Solanum lycopersicum","Kinase family protein (AHRD V3.3 *** B9N417_POPTR)","protein_coding"
"Sopen11g017320","No alias","Solanum pennellii","MCM2/3/5 family","protein_coding"