"sequence_id","alias","species","description","type" "101548","No alias","Selaginella moellendorffii ","ubiquitin 5","protein_coding" "102878","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "104486","No alias","Selaginella moellendorffii ","Cysteine proteinases superfamily protein","protein_coding" "109207","No alias","Selaginella moellendorffii ","DNA topoisomerase 1 beta","protein_coding" "109920","No alias","Selaginella moellendorffii ","Ribosomal protein L33 family protein","protein_coding" "110007","No alias","Selaginella moellendorffii ","phosphoenolpyruvate carboxylase-related kinase 1","protein_coding" "110083","No alias","Selaginella moellendorffii ","hemoglobin 3","protein_coding" "111859","No alias","Selaginella moellendorffii ","Subtilisin-like serine endopeptidase family protein","protein_coding" "113824","No alias","Selaginella moellendorffii ","casein kinase 1","protein_coding" "124520","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "125075","No alias","Selaginella moellendorffii ","Ribosomal protein L39 family protein","protein_coding" "126710","No alias","Selaginella moellendorffii ","transducin family protein / WD-40 repeat family protein","protein_coding" "127198","No alias","Selaginella moellendorffii ","UDP-Glycosyltransferase superfamily protein","protein_coding" "131171","No alias","Selaginella moellendorffii ","Haloacid dehalogenase-like hydrolase (HAD) superfamily protein","protein_coding" "134282","No alias","Selaginella moellendorffii ","ABA Overly-Sensitive 5","protein_coding" "145504","No alias","Selaginella moellendorffii ","DNA topoisomerase 1 beta","protein_coding" "152781","No alias","Selaginella moellendorffii ","DNA topoisomerase 1 beta","protein_coding" "163585","No alias","Selaginella moellendorffii ","Major facilitator superfamily protein","protein_coding" "165311","No alias","Selaginella moellendorffii ","basic helix-loop-helix (bHLH) DNA-binding superfamily protein","protein_coding" "165556","No alias","Selaginella moellendorffii ","basic helix-loop-helix (bHLH) DNA-binding superfamily protein","protein_coding" "167719","No alias","Selaginella moellendorffii ","O-acetylserine (thiol) lyase B","protein_coding" "168073","No alias","Selaginella moellendorffii ","ARP protein (REF)","protein_coding" "171605","No alias","Selaginella moellendorffii ","small ubiquitin-like modifier 2","protein_coding" "172214","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "172589","No alias","Selaginella moellendorffii ","4-phospho-panto-thenoylcysteine synthetase","protein_coding" "173570","No alias","Selaginella moellendorffii ","DNA directed RNA polymerase, 7 kDa subunit","protein_coding" "173762","No alias","Selaginella moellendorffii ","molybdenum cofactor sulfurase (LOS5) (ABA3)","protein_coding" "174049","No alias","Selaginella moellendorffii ","Pentatricopeptide repeat (PPR-like) superfamily protein","protein_coding" "185086","No alias","Selaginella moellendorffii ","FK506-binding protein 12","protein_coding" "18765","No alias","Selaginella moellendorffii ","Ribosomal protein S16 family protein","protein_coding" "19423","No alias","Selaginella moellendorffii ","DNA topoisomerase I alpha","protein_coding" "19426","No alias","Selaginella moellendorffii ","DNA topoisomerase I alpha","protein_coding" "227480","No alias","Selaginella moellendorffii ","Low temperature and salt responsive protein family","protein_coding" "228058","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "228166","No alias","Selaginella moellendorffii ","Ribosomal L29e protein family","protein_coding" "228181","No alias","Selaginella moellendorffii ","small nuclear ribonucleoprotein F","protein_coding" "228208","No alias","Selaginella moellendorffii ","secE/sec61-gamma protein transport protein","protein_coding" "232546","No alias","Selaginella moellendorffii ","pectin methylesterase PCR fragment F","protein_coding" "24191","No alias","Selaginella moellendorffii ","alpha/beta-Hydrolases superfamily protein","protein_coding" "270132","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "270651","No alias","Selaginella moellendorffii ","acyl-CoA-binding protein 6","protein_coding" "270776","No alias","Selaginella moellendorffii ","Cytochrome b-c1 complex, subunit 8 protein","protein_coding" "29765","No alias","Selaginella moellendorffii ","ATP synthase epsilon chain, mitochondrial","protein_coding" "29789","No alias","Selaginella moellendorffii ","arabinogalactan protein 16","protein_coding" "402012","No alias","Selaginella moellendorffii ","tubby like protein 5","protein_coding" "402887","No alias","Selaginella moellendorffii ","ankyrin-like1","protein_coding" "402911","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "402950","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "403920","No alias","Selaginella moellendorffii ","gibberellic acid methyltransferase 2","protein_coding" "404138","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "404517","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "406846","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "407023","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "407700","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "408045","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "408862","No alias","Selaginella moellendorffii ","Polynucleotidyl transferase, ribonuclease H-like superfamily protein","protein_coding" "411634","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "412516","No alias","Selaginella moellendorffii ","Subtilisin-like serine endopeptidase family protein","protein_coding" "412927","No alias","Selaginella moellendorffii ","tonoplast dicarboxylate transporter","protein_coding" "413577","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "414117","No alias","Selaginella moellendorffii ","threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative","protein_coding" "414778","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "415385","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "415909","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "416323","No alias","Selaginella moellendorffii ","binding","protein_coding" "416717","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "417198","No alias","Selaginella moellendorffii ","2-phosphoglycolate phosphatase 1","protein_coding" "417983","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "419138","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "419518","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "420068","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "420330","No alias","Selaginella moellendorffii ","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding" "421400","No alias","Selaginella moellendorffii ","RNA-binding (RRM/RBD/RNP motifs) family protein","protein_coding" "422156","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "424451","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "424895","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "425123","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "425264","No alias","Selaginella moellendorffii ","protein arginine methyltransferase 7","protein_coding" "425349","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "425461","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "428953","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "429423","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "430840","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "432063","No alias","Selaginella moellendorffii ","zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides","protein_coding" "432559","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "437247","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "437453","No alias","Selaginella moellendorffii ","TraB family protein","protein_coding" "438342","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "438700","No alias","Selaginella moellendorffii ","Ribosomal protein S3 family protein","protein_coding" "438896","No alias","Selaginella moellendorffii ","Cwf15 / Cwc15 cell cycle control family protein","protein_coding" "440913","No alias","Selaginella moellendorffii ","PHD finger family protein","protein_coding" "441010","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "441539","No alias","Selaginella moellendorffii ","alpha-L-fucosidase 1","protein_coding" "441682","No alias","Selaginella moellendorffii ","dehydration-induced protein (ERD15)","protein_coding" "445244","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "446094","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "446449","No alias","Selaginella moellendorffii ","glycine-rich protein","protein_coding" "59845","No alias","Selaginella moellendorffii ","tubulin folding cofactor A (KIESEL)","protein_coding" "69848","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "69878","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "69921","No alias","Selaginella moellendorffii ","CSL zinc finger domain-containing protein","protein_coding" "72615","No alias","Selaginella moellendorffii ","RING/U-box superfamily protein","protein_coding" "79810","No alias","Selaginella moellendorffii ","SC35-like splicing factor 30A","protein_coding" "80180","No alias","Selaginella moellendorffii ","Dihydropterin pyrophosphokinase / Dihydropteroate synthase","protein_coding" "81471","No alias","Selaginella moellendorffii ","Peptidase M28 family protein","protein_coding" "81834","No alias","Selaginella moellendorffii ","Small nuclear ribonucleoprotein family protein","protein_coding" "82059","No alias","Selaginella moellendorffii ","ABI3-interacting protein 3","protein_coding" "90525","No alias","Selaginella moellendorffii ","Small nuclear ribonucleoprotein family protein","protein_coding" "92017","No alias","Selaginella moellendorffii ","starch synthase 4","protein_coding" "92402","No alias","Selaginella moellendorffii ","Ribosomal protein L36","protein_coding" "92844","No alias","Selaginella moellendorffii ","ssDNA-binding transcriptional regulator","protein_coding" "98349","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "98870","No alias","Selaginella moellendorffii ","RHOMBOID-like 1","protein_coding" "A4A49_13004","No alias","Nicotiana attenuata","dna topoisomerase 1","protein_coding" "AC155434.2_FG004","No alias","Zea mays","Nuclear pore complex protein","protein_coding" "AC218457.2_FG013","No alias","Zea mays","WD40/YVTN repeat-like-containing domain;Bromodomain","protein_coding" "At1g01930","No alias","Arabidopsis thaliana","F22M8.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPC8]","protein_coding" "At1g02080","No alias","Arabidopsis thaliana","Transcription regulator [Source:UniProtKB/TrEMBL;Acc:F4HVV6]","protein_coding" "At1g02890","No alias","Arabidopsis thaliana","AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:F4HZ82]","protein_coding" "At1g03080","No alias","Arabidopsis thaliana","Protein NETWORKED 1D [Source:UniProtKB/Swiss-Prot;Acc:F4HZB5]","protein_coding" "At1g04200","No alias","Arabidopsis thaliana","Dyggve-melchior-clausen syndrome protein [Source:UniProtKB/TrEMBL;Acc:Q8RWV1]","protein_coding" "At1g08620","No alias","Arabidopsis thaliana","Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Source:TAIR;Acc:AT1G08620]","protein_coding" "At1g10320","No alias","Arabidopsis thaliana","Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]","protein_coding" "At1g10670","No alias","Arabidopsis thaliana","ATP-citrate lyase A-1 [Source:UniProtKB/TrEMBL;Acc:F4I5V8]","protein_coding" "At1g12360","No alias","Arabidopsis thaliana","SNARE-interacting protein KEULE [Source:UniProtKB/Swiss-Prot;Acc:Q9C5X3]","protein_coding" "At1g14830","No alias","Arabidopsis thaliana","DRP1C [Source:UniProtKB/TrEMBL;Acc:A0A178W4V6]","protein_coding" "At1g14840","No alias","Arabidopsis thaliana","Microtubule-associated protein 70-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQU7]","protein_coding" "At1g15200","No alias","Arabidopsis thaliana","Protein-protein interaction regulator family protein [Source:UniProtKB/TrEMBL;Acc:F4HZI8]","protein_coding" "At1g16210","No alias","Arabidopsis thaliana","Coiled-coil protein [Source:UniProtKB/TrEMBL;Acc:Q8VYC9]","protein_coding" "At1g16710","No alias","Arabidopsis thaliana","Histone acetyltransferase HAC12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWQ5]","protein_coding" "At1g17140","No alias","Arabidopsis thaliana","RIP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8G4]","protein_coding" "At1g17145","No alias","Arabidopsis thaliana","E3 ubiquitin-protein ligase DA2L [Source:UniProtKB/Swiss-Prot;Acc:Q940G8]","protein_coding" "At1g18950","No alias","Arabidopsis thaliana","DDT domain superfamily [Source:TAIR;Acc:AT1G18950]","protein_coding" "At1g19485","No alias","Arabidopsis thaliana","Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HP69]","protein_coding" "At1g19835","No alias","Arabidopsis thaliana","Filament-like plant protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WSY2]","protein_coding" "At1g20830","No alias","Arabidopsis thaliana","Protein MULTIPLE CHLOROPLAST DIVISION SITE 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWA7]","protein_coding" "At1g20960","No alias","Arabidopsis thaliana","DExH-box ATP-dependent RNA helicase DExH12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYP1]","protein_coding" "At1g21450","No alias","Arabidopsis thaliana","Scarecrow-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ3]","protein_coding" "At1g22060","No alias","Arabidopsis thaliana","LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: FBD, F-box and Leucine Rich Repeat domains containing protein (TAIR:AT1G22000.1); Has 84739 Blast hits to 38714 p /.../s in 2257 species: Archae - 1436; Bacteria - 11314; Metazoa - 40747; Fungi - 7706; Plants - 4675; Viruses - 308; Other Eukaryotes - 18553 (source: NCBI BLink). [Source:TAIR;Acc:AT1G22060]","protein_coding" "At1g27210","No alias","Arabidopsis thaliana","TORTIFOLIA1-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZH1]","protein_coding" "At1g28420","No alias","Arabidopsis thaliana","Homeobox-DDT domain protein RLT1 [Source:UniProtKB/Swiss-Prot;Acc:F4HY56]","protein_coding" "At1g30300","No alias","Arabidopsis thaliana","At1g30300 [Source:UniProtKB/TrEMBL;Acc:Q6NNG9]","protein_coding" "At1g30400","No alias","Arabidopsis thaliana","ABC transporter C family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8G9]","protein_coding" "At1g32490","No alias","Arabidopsis thaliana","ESP3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3A5]","protein_coding" "At1g36180","No alias","Arabidopsis thaliana","Acetyl-CoA carboxylase 2 [Source:UniProtKB/Swiss-Prot;Acc:F4I1L3]","protein_coding" "At1g43850","No alias","Arabidopsis thaliana","Transcriptional corepressor SEUSS [Source:UniProtKB/Swiss-Prot;Acc:Q8W234]","protein_coding" "At1g47550","No alias","Arabidopsis thaliana","Exocyst complex component sec3A [Source:UniProtKB/TrEMBL;Acc:F4HTA1]","protein_coding" "At1g53750","No alias","Arabidopsis thaliana","RPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]","protein_coding" "At1g53800","No alias","Arabidopsis thaliana","AT1G53800 protein [Source:UniProtKB/TrEMBL;Acc:B9DHC9]","protein_coding" "At1g54090","No alias","Arabidopsis thaliana","At1g54090 [Source:UniProtKB/TrEMBL;Acc:Q9SYG5]","protein_coding" "At1g58050","No alias","Arabidopsis thaliana","DExH-box ATP-dependent RNA helicase DExH4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6G0]","protein_coding" "At1g58230","No alias","Arabidopsis thaliana","binding [Source:TAIR;Acc:AT1G58230]","protein_coding" "At1g60560","No alias","Arabidopsis thaliana","At1g60560/F8A5_10 [Source:UniProtKB/TrEMBL;Acc:Q8RY56]","protein_coding" "At1g63430","No alias","Arabidopsis thaliana","Leucine-rich repeat protein kinase family protein [Source:UniProtKB/TrEMBL;Acc:F4I233]","protein_coding" "At1g63770","No alias","Arabidopsis thaliana","Peptidase M1 family protein [Source:UniProtKB/TrEMBL;Acc:F4I3R0]","protein_coding" "At1g64440","No alias","Arabidopsis thaliana","UDP-glucose 4-epimerase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7W7]","protein_coding" "At1g64450","No alias","Arabidopsis thaliana","At1g64450 [Source:UniProtKB/TrEMBL;Acc:Q9SGW9]","protein_coding" "At1g65660","No alias","Arabidopsis thaliana","SMP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W8X4]","protein_coding" "At1g67230","No alias","Arabidopsis thaliana","Protein CROWDED NUCLEI 1 [Source:UniProtKB/Swiss-Prot;Acc:F4HRT5]","protein_coding" "At1g68790","No alias","Arabidopsis thaliana","Protein CROWDED NUCLEI 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA42]","protein_coding" "At1g69670","No alias","Arabidopsis thaliana","Cullin-3B [Source:UniProtKB/Swiss-Prot;Acc:Q9C9L0]","protein_coding" "At1g70620","No alias","Arabidopsis thaliana","Cyclin-like protein [Source:UniProtKB/TrEMBL;Acc:F4I6U7]","protein_coding" "At1g74250","No alias","Arabidopsis thaliana","DNAJ protein JJJ1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9C911]","protein_coding" "At1g74690","No alias","Arabidopsis thaliana","Protein IQ-DOMAIN 31 [Source:UniProtKB/Swiss-Prot;Acc:Q8L4D8]","protein_coding" "At1g79830","No alias","Arabidopsis thaliana","Golgin Putative 5 [Source:UniProtKB/TrEMBL;Acc:F4HQB9]","protein_coding" "At1g80790","No alias","Arabidopsis thaliana","Factor of DNA methylation 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAI1]","protein_coding" "At2g13440","No alias","Arabidopsis thaliana","Glucose-inhibited division family A protein [Source:UniProtKB/TrEMBL;Acc:Q9SHS2]","protein_coding" "At2g16860","No alias","Arabidopsis thaliana","Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZVX7]","protein_coding" "At2g17930","No alias","Arabidopsis thaliana","Phosphatidylinositol 3-and 4-kinase family protein with FAT domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IPJ1]","protein_coding" "At2g20280","No alias","Arabidopsis thaliana","Zinc finger CCCH domain-containing protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK74]","protein_coding" "At2g21540","No alias","Arabidopsis thaliana","Phosphatidylinositol/phosphatidylcholine transfer protein SFH3 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZE9]","protein_coding" "At2g25170","No alias","Arabidopsis thaliana","chromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]","protein_coding" "At2g26910","No alias","Arabidopsis thaliana","PEC1 [Source:UniProtKB/TrEMBL;Acc:A0A178VNA5]","protein_coding" "At2g26920","No alias","Arabidopsis thaliana","At2g26920 [Source:UniProtKB/TrEMBL;Acc:O81015]","protein_coding" "At2g27090","No alias","Arabidopsis thaliana","At2g27090 [Source:UniProtKB/TrEMBL;Acc:Q9ZVD1]","protein_coding" "At2g27170","No alias","Arabidopsis thaliana","Structural maintenance of chromosomes protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q56YN8]","protein_coding" "At2g27760","No alias","Arabidopsis thaliana","tRNA dimethylallyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUX7]","protein_coding" "At2g30500","No alias","Arabidopsis thaliana","Protein NETWORKED 4B [Source:UniProtKB/Swiss-Prot;Acc:Q84VY2]","protein_coding" "At2g30800","No alias","Arabidopsis thaliana","DExH-box ATP-dependent RNA helicase DExH6 [Source:UniProtKB/Swiss-Prot;Acc:F4INY4]","protein_coding" "At2g30950","No alias","Arabidopsis thaliana","FtsH extracellular protease family [Source:TAIR;Acc:AT2G30950]","protein_coding" "At2g31960","No alias","Arabidopsis thaliana","Callose synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL03]","protein_coding" "At2g32860","No alias","Arabidopsis thaliana","Beta-glucosidase 33 [Source:UniProtKB/Swiss-Prot;Acc:O48779]","protein_coding" "At2g36810","No alias","Arabidopsis thaliana","Protein SHOOT GRAVITROPISM 6 [Source:UniProtKB/Swiss-Prot;Acc:F4IP13]","protein_coding" "At2g36850","No alias","Arabidopsis thaliana","Callose synthase 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJM0]","protein_coding" "At2g36990","No alias","Arabidopsis thaliana","RNA polymerase sigma factor sigF, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD95]","protein_coding" "At2g38040","No alias","Arabidopsis thaliana","Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LD43]","protein_coding" "At2g39340","No alias","Arabidopsis thaliana","SAC3 family protein A [Source:UniProtKB/Swiss-Prot;Acc:F4IUY8]","protein_coding" "At2g42300","No alias","Arabidopsis thaliana","Transcription factor bHLH48 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ02]","protein_coding" "At2g44150","No alias","Arabidopsis thaliana","SDG7 [Source:UniProtKB/TrEMBL;Acc:A0A178VNH9]","protein_coding" "At3g01320","No alias","Arabidopsis thaliana","Paired amphipathic helix protein Sin3-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRH9]","protein_coding" "At3g01370","No alias","Arabidopsis thaliana","CRM-domain containing factor CFM2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8L7C2]","protein_coding" "At3g02260","No alias","Arabidopsis thaliana","Auxin transport protein BIG [Source:UniProtKB/Swiss-Prot;Acc:Q9SRU2]","protein_coding" "At3g04450","No alias","Arabidopsis thaliana","Myb family transcription factor PHL13 [Source:UniProtKB/Swiss-Prot;Acc:F4J3P7]","protein_coding" "At3g04810","No alias","Arabidopsis thaliana","Serine/threonine-protein kinase Nek2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAU7]","protein_coding" "At3g06400","No alias","Arabidopsis thaliana","Chromatin-remodeling complex ATPase [Source:UniProtKB/TrEMBL;Acc:F4JAV9]","protein_coding" "At3g09670","No alias","Arabidopsis thaliana","Tudor/PWWP/MBT superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SF36]","protein_coding" "At3g10360","No alias","Arabidopsis thaliana","Pumilio homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS47]","protein_coding" "At3g10490","No alias","Arabidopsis thaliana","NAC052 [Source:UniProtKB/TrEMBL;Acc:A0A178VCW1]","protein_coding" "At3g11450","No alias","Arabidopsis thaliana","DnaJ and Myb-like DNA-binding domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4J6A8]","protein_coding" "At3g12480","No alias","Arabidopsis thaliana","NF-YC11 [Source:UniProtKB/TrEMBL;Acc:A0A178VDL4]","protein_coding" "At3g12990","No alias","Arabidopsis thaliana","Exosome complex component RRP45A [Source:UniProtKB/Swiss-Prot;Acc:Q9LDM2]","protein_coding" "At3g17740","No alias","Arabidopsis thaliana","At3g17740 [Source:UniProtKB/TrEMBL;Acc:Q9LSH4]","protein_coding" "At3g18040","No alias","Arabidopsis thaliana","Mitogen-activated protein kinase [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRW0]","protein_coding" "At3g19370","No alias","Arabidopsis thaliana","Filament-like protein (DUF869) [Source:UniProtKB/TrEMBL;Acc:F4JB65]","protein_coding" "At3g22120","No alias","Arabidopsis thaliana","Cell wall-plasma membrane linker protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSA3]","protein_coding" "At3g22220","No alias","Arabidopsis thaliana","HAT transposon superfamily [Source:UniProtKB/TrEMBL;Acc:Q9LIE1]","protein_coding" "At3g22520","No alias","Arabidopsis thaliana","Spindle assembly abnormal protein [Source:UniProtKB/TrEMBL;Acc:Q9LJ94]","protein_coding" "At3g22790","No alias","Arabidopsis thaliana","Protein NETWORKED 1A [Source:UniProtKB/Swiss-Prot;Acc:Q9LUI2]","protein_coding" "At3g24430","No alias","Arabidopsis thaliana","Fe-S cluster assembly factor HCF101, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q6STH5]","protein_coding" "At3g25800","No alias","Arabidopsis thaliana","Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38950]","protein_coding" "At3g26560","No alias","Arabidopsis thaliana","Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 [Source:UniProtKB/Swiss-Prot;Acc:Q38953]","protein_coding" "At3g27530","No alias","Arabidopsis thaliana","Golgin candidate 6 [Source:UniProtKB/Swiss-Prot;Acc:B0F9L4]","protein_coding" "At3g28030","No alias","Arabidopsis thaliana","5'-3' exonuclease family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LM66]","protein_coding" "At3g28690","No alias","Arabidopsis thaliana","Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J0D2]","protein_coding" "At3g44600","No alias","Arabidopsis thaliana","Peptidyl-prolyl cis-trans isomerase CYP71 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4D0]","protein_coding" "At3g49490","No alias","Arabidopsis thaliana","Uncharacterized protein T9C5.90 [Source:UniProtKB/TrEMBL;Acc:Q9SCK9]","protein_coding" "At3g52890","No alias","Arabidopsis thaliana","Serine/threonine-protein kinase KIPK1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFA2]","protein_coding" "At3g53350","No alias","Arabidopsis thaliana","ROP interactive partner 4 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNX3]","protein_coding" "At3g54190","No alias","Arabidopsis thaliana","AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]","protein_coding" "At3g54540","No alias","Arabidopsis thaliana","ABC transporter F family member 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1H3]","protein_coding" "At3g56640","No alias","Arabidopsis thaliana","Exocyst complex component [Source:UniProtKB/TrEMBL;Acc:A0A178V8H8]","protein_coding" "At3g57300","No alias","Arabidopsis thaliana","DNA helicase INO80-like protein [Source:UniProtKB/TrEMBL;Acc:F4J277]","protein_coding" "At3g57470","No alias","Arabidopsis thaliana","Insulin-degrading enzyme-like 2 [Source:UniProtKB/Swiss-Prot;Acc:F4J3D9]","protein_coding" "At4g00020","No alias","Arabidopsis thaliana","BREAST CANCER 2 like 2A [Source:UniProtKB/TrEMBL;Acc:F4JGU5]","protein_coding" "At4g00990","No alias","Arabidopsis thaliana","Transcription factor jumonji (JmjC) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8VYB9]","protein_coding" "At4g01570","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At4g01570 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZE4]","protein_coding" "At4g01780","No alias","Arabidopsis thaliana","XH/XS domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JG55]","protein_coding" "At4g01800","No alias","Arabidopsis thaliana","Albino or Glassy Yellow 1 [Source:UniProtKB/TrEMBL;Acc:F4JG57]","protein_coding" "At4g02020","No alias","Arabidopsis thaliana","Histone-lysine N-methyltransferase EZA1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSM8]","protein_coding" "At4g02210","No alias","Arabidopsis thaliana","Myb/SANT-like DNA-binding domain protein [Source:UniProtKB/TrEMBL;Acc:O81424]","protein_coding" "At4g04740","No alias","Arabidopsis thaliana","Calcium-dependent protein kinase 23 [Source:UniProtKB/TrEMBL;Acc:F4JGW8]","protein_coding" "At4g08310","No alias","Arabidopsis thaliana","DNA ligase [Source:UniProtKB/TrEMBL;Acc:Q9SUE9]","protein_coding" "At4g09150","No alias","Arabidopsis thaliana","T-complex protein 11 [Source:UniProtKB/TrEMBL;Acc:F4JJB2]","protein_coding" "At4g09680","No alias","Arabidopsis thaliana","Conserved telomere maintenance component 1 [Source:UniProtKB/TrEMBL;Acc:F4JKR3]","protein_coding" "At4g10060","No alias","Arabidopsis thaliana","Non-lysosomal glucosylceramidase [Source:UniProtKB/TrEMBL;Acc:F4JLJ2]","protein_coding" "At4g10710","No alias","Arabidopsis thaliana","FACT complex subunit SPT16 [Source:UniProtKB/Swiss-Prot;Acc:O82491]","protein_coding" "At4g12640","No alias","Arabidopsis thaliana","RNA recognition motif (RRM)-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JRD9]","protein_coding" "At4g17330","No alias","Arabidopsis thaliana","G2484-1 protein [Source:UniProtKB/TrEMBL;Acc:F4JP43]","protein_coding" "At4g19600","No alias","Arabidopsis thaliana","Cyclin-T1-4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GYM6]","protein_coding" "At4g23740","No alias","Arabidopsis thaliana","Probable inactive receptor kinase At4g23740 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUQ3]","protein_coding" "At4g27650","No alias","Arabidopsis thaliana","Protein pelota homolog [Source:UniProtKB/TrEMBL;Acc:A0A178V176]","protein_coding" "At4g28080","No alias","Arabidopsis thaliana","Protein TSS [Source:UniProtKB/Swiss-Prot;Acc:F4JKH6]","protein_coding" "At4g29940","No alias","Arabidopsis thaliana","Pathogenesis-related homeodomain protein [Source:UniProtKB/Swiss-Prot;Acc:P48785]","protein_coding" "At4g33210","No alias","Arabidopsis thaliana","SLOMO [Source:UniProtKB/TrEMBL;Acc:A0A178V148]","protein_coding" "At4g35800","No alias","Arabidopsis thaliana","DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UYS0]","protein_coding" "At4g37080","No alias","Arabidopsis thaliana","Protein of unknown function, DUF547 [Source:TAIR;Acc:AT4G37080]","protein_coding" "At4g37120","No alias","Arabidopsis thaliana","SMP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UW38]","protein_coding" "At4g37930","No alias","Arabidopsis thaliana","Serine hydroxymethyltransferase 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SZJ5]","protein_coding" "At5g03420","No alias","Arabidopsis thaliana","Protein PTST homolog 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4KFB3]","protein_coding" "At5g04240","No alias","Arabidopsis thaliana","ELF6 [Source:UniProtKB/TrEMBL;Acc:A0A178UAR7]","protein_coding" "At5g04460","No alias","Arabidopsis thaliana","RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JWA1]","protein_coding" "At5g05210","No alias","Arabidopsis thaliana","AT5g05210/K2A11_8 [Source:UniProtKB/TrEMBL;Acc:Q9FLD3]","protein_coding" "At5g05780","No alias","Arabidopsis thaliana","26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]","protein_coding" "At5g07940","No alias","Arabidopsis thaliana","Dentin sialophosphoprotein-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FF08]","protein_coding" "At5g10940","No alias","Arabidopsis thaliana","Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q94BQ3]","protein_coding" "At5g12290","No alias","Arabidopsis thaliana","DGS1 [Source:UniProtKB/TrEMBL;Acc:A0A178UP20]","protein_coding" "At5g14720","No alias","Arabidopsis thaliana","Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84WU5]","protein_coding" "At5g15270","No alias","Arabidopsis thaliana","RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]","protein_coding" "At5g15580","No alias","Arabidopsis thaliana","Protein LONGIFOLIA 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF24]","protein_coding" "At5g16180","No alias","Arabidopsis thaliana","Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF10]","protein_coding" "At5g16730","No alias","Arabidopsis thaliana","WEB family protein At5g16730, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LFE4]","protein_coding" "At5g16780","No alias","Arabidopsis thaliana","MDF [Source:UniProtKB/TrEMBL;Acc:A0A178UP47]","protein_coding" "At5g17510","No alias","Arabidopsis thaliana","Glutamine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q9LF51]","protein_coding" "At5g18230","No alias","Arabidopsis thaliana","transcription regulator NOT2/NOT3/NOT5 family protein [Source:TAIR;Acc:AT5G18230]","protein_coding" "At5g18240","No alias","Arabidopsis thaliana","Myb-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK47]","protein_coding" "At5g19010","No alias","Arabidopsis thaliana","Mitogen-activated protein kinase 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4J2]","protein_coding" "At5g19680","No alias","Arabidopsis thaliana","Protein phosphatase 1 regulatory inhibitor subunit PPP1R7 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q84WJ9]","protein_coding" "At5g22450","No alias","Arabidopsis thaliana","unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G19390.1); Has 30201 Blast hits to 17322 proteins in 780 species: A /.../- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G22450]","protein_coding" "At5g26780","No alias","Arabidopsis thaliana","serine hydroxymethyltransferase 2 [Source:TAIR;Acc:AT5G26780]","protein_coding" "At5g26910","No alias","Arabidopsis thaliana","TRM8 [Source:UniProtKB/TrEMBL;Acc:A0A178UJN1]","protein_coding" "At5g35750","No alias","Arabidopsis thaliana","Histidine kinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U2]","protein_coding" "At5g42400","No alias","Arabidopsis thaliana","SET domain protein 25 [Source:TAIR;Acc:AT5G42400]","protein_coding" "At5g43560","No alias","Arabidopsis thaliana","TNF receptor-associated factor homolog 1a [Source:UniProtKB/Swiss-Prot;Acc:Q8RY18]","protein_coding" "At5g44800","No alias","Arabidopsis thaliana","PKR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UKW2]","protein_coding" "At5g45190","No alias","Arabidopsis thaliana","Cyclin family protein [Source:UniProtKB/TrEMBL;Acc:F4KD43]","protein_coding" "At5g46400","No alias","Arabidopsis thaliana","Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KHG8]","protein_coding" "At5g47820","No alias","Arabidopsis thaliana","Kinesin-like protein KIN-4A [Source:UniProtKB/Swiss-Prot;Acc:Q8GS71]","protein_coding" "At5g49470","No alias","Arabidopsis thaliana","PAS domain-containing protein tyrosine kinase family protein [Source:UniProtKB/TrEMBL;Acc:F4K645]","protein_coding" "At5g49930","No alias","Arabidopsis thaliana","Gb [Source:UniProtKB/TrEMBL;Acc:Q9LTX7]","protein_coding" "At5g50920","No alias","Arabidopsis thaliana","Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]","protein_coding" "At5g52280","No alias","Arabidopsis thaliana","At5g52280 [Source:UniProtKB/TrEMBL;Acc:Q9FHD1]","protein_coding" "At5g54280","No alias","Arabidopsis thaliana","Myosin-2 [Source:UniProtKB/Swiss-Prot;Acc:F4K0A6]","protein_coding" "At5g55300","No alias","Arabidopsis thaliana","DNA topoisomerase I alpha [Source:UniProtKB/TrEMBL;Acc:F4K3F4]","protein_coding" "At5g55310","No alias","Arabidopsis thaliana","DNA topoisomerase 1 beta [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ79]","protein_coding" "At5g56240","No alias","Arabidopsis thaliana","BEST Arabidopsis thaliana protein match is: hapless 8 (TAIR:AT5G56250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: /.../BLink). [Source:TAIR;Acc:AT5G56240]","protein_coding" "At5g63710","No alias","Arabidopsis thaliana","Leucine-rich repeat protein kinase family protein [Source:TAIR;Acc:AT5G63710]","protein_coding" "At5g65260","No alias","Arabidopsis thaliana","Polyadenylate-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJN9]","protein_coding" "Bradi1g01936","No alias","Brachypodium distachyon","Protein kinase superfamily protein","protein_coding" "Bradi1g03170","No alias","Brachypodium distachyon","Protein of unknown function (DUF300)","protein_coding" "Bradi1g05070","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi1g05420","No alias","Brachypodium distachyon","Protein of unknown function (DUF2361)","protein_coding" "Bradi1g06235","No alias","Brachypodium distachyon","DNA binding","protein_coding" "Bradi1g08470","No alias","Brachypodium distachyon","homolog of yeast ADA2 2B","protein_coding" "Bradi1g08977","No alias","Brachypodium distachyon","Leucine-rich repeat protein kinase family protein","protein_coding" "Bradi1g12910","No alias","Brachypodium distachyon","Pleckstrin homology (PH) domain-containing protein","protein_coding" "Bradi1g20125","No alias","Brachypodium distachyon","putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain","protein_coding" "Bradi1g26310","No alias","Brachypodium distachyon","calcium-dependent protein kinase 33","protein_coding" "Bradi1g28920","No alias","Brachypodium distachyon","phosphate starvation response 1","protein_coding" "Bradi1g30410","No alias","Brachypodium distachyon","Phox (PX) domain-containing protein","protein_coding" "Bradi1g32770","No alias","Brachypodium distachyon","heat shock protein 70 (Hsp 70) family protein","protein_coding" "Bradi1g34360","No alias","Brachypodium distachyon","3-phosphoinositide-dependent protein kinase-1, putative","protein_coding" "Bradi1g36467","No alias","Brachypodium distachyon","nucleoporin-related","protein_coding" "Bradi1g36536","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi1g51880","No alias","Brachypodium distachyon","Ubiquitin C-terminal hydrolases superfamily protein","protein_coding" "Bradi1g54730","No alias","Brachypodium distachyon","proline-rich family protein","protein_coding" "Bradi1g59030","No alias","Brachypodium distachyon","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding" "Bradi1g59100","No alias","Brachypodium distachyon","histone-lysine N-methyltransferases","protein_coding" "Bradi1g64410","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding" "Bradi1g64460","No alias","Brachypodium distachyon","SET domain-containing protein","protein_coding" "Bradi1g68957","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi1g72310","No alias","Brachypodium distachyon","origin recognition complex second largest subunit 2","protein_coding" "Bradi1g74000","No alias","Brachypodium distachyon","Ubiquitin carboxyl-terminal hydrolase-related protein","protein_coding" "Bradi1g74840","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi1g77160","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi1g77440","No alias","Brachypodium distachyon","26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain","protein_coding" "Bradi2g02976","No alias","Brachypodium distachyon","actin-related protein 5","protein_coding" "Bradi2g03120","No alias","Brachypodium distachyon","Transcription elongation factor (TFIIS) family protein","protein_coding" "Bradi2g08980","No alias","Brachypodium distachyon","Nucleoporin autopeptidase","protein_coding" "Bradi2g12530","No alias","Brachypodium distachyon","binding","protein_coding" "Bradi2g15390","No alias","Brachypodium distachyon","Phox-associated domain;Phox-like;Sorting nexin, C-terminal","protein_coding" "Bradi2g15526","No alias","Brachypodium distachyon","zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein","protein_coding" "Bradi2g16950","No alias","Brachypodium distachyon","ubiquitin-conjugating enzyme 25","protein_coding" "Bradi2g21210","No alias","Brachypodium distachyon","zinc ion binding","protein_coding" "Bradi2g22927","No alias","Brachypodium distachyon","ubiquitin-protein ligase 4","protein_coding" "Bradi2g26530","No alias","Brachypodium distachyon","glycine-rich protein","protein_coding" "Bradi2g31250","No alias","Brachypodium distachyon","RING/U-box superfamily protein","protein_coding" "Bradi2g31570","No alias","Brachypodium distachyon","ubiquitin-conjugating enzyme 25","protein_coding" "Bradi2g34827","No alias","Brachypodium distachyon","bromodomain and extraterminal domain protein 9","protein_coding" "Bradi2g35830","No alias","Brachypodium distachyon","cullin 1","protein_coding" "Bradi2g36237","No alias","Brachypodium distachyon","Fibronectin type III domain-containing protein","protein_coding" "Bradi2g38650","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi2g46070","No alias","Brachypodium distachyon","RING/U-box superfamily protein","protein_coding" "Bradi2g46650","No alias","Brachypodium distachyon","AUTOPHAGY 6","protein_coding" "Bradi2g49760","No alias","Brachypodium distachyon","Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain","protein_coding" "Bradi2g50340","No alias","Brachypodium distachyon","Y-family DNA polymerase H","protein_coding" "Bradi2g54120","No alias","Brachypodium distachyon","Haloacid dehalogenase-like hydrolase (HAD) superfamily protein","protein_coding" "Bradi2g58420","No alias","Brachypodium distachyon","snRNA activating complex family protein","protein_coding" "Bradi2g59930","No alias","Brachypodium distachyon","Mitochondrial substrate carrier family protein","protein_coding" "Bradi2g60537","No alias","Brachypodium distachyon","DNA topoisomerase 1 beta","protein_coding" "Bradi2g60850","No alias","Brachypodium distachyon","SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein","protein_coding" "Bradi2g62532","No alias","Brachypodium distachyon","SAND family protein","protein_coding" "Bradi3g03550","No alias","Brachypodium distachyon","RNA-binding (RRM/RBD/RNP motifs) family protein","protein_coding" "Bradi3g06027","No alias","Brachypodium distachyon","evolutionarily conserved C-terminal region 8","protein_coding" "Bradi3g16920","No alias","Brachypodium distachyon","DNA topoisomerase 1 beta","protein_coding" "Bradi3g22908","No alias","Brachypodium distachyon","Nucleotidyltransferase family protein","protein_coding" "Bradi3g26160","No alias","Brachypodium distachyon","F-box family protein","protein_coding" "Bradi3g28784","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi3g29270","No alias","Brachypodium distachyon","Protein of unknown function (DUF3506)","protein_coding" "Bradi3g29910","No alias","Brachypodium distachyon","WAPL (Wings apart-like protein regulation of heterochromatin) protein","protein_coding" "Bradi3g36620","No alias","Brachypodium distachyon","Galactose oxidase/kelch repeat superfamily protein","protein_coding" "Bradi3g40437","No alias","Brachypodium distachyon","Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related","protein_coding" "Bradi3g40460","No alias","Brachypodium distachyon","RNA-binding (RRM/RBD/RNP motifs) family protein","protein_coding" "Bradi3g41869","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding" "Bradi3g50245","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi3g50280","No alias","Brachypodium distachyon","Protein kinase superfamily protein","protein_coding" "Bradi3g54040","No alias","Brachypodium distachyon","ubiquitin-specific protease 23","protein_coding" "Bradi3g55540","No alias","Brachypodium distachyon","pumilio 4","protein_coding" "Bradi3g57717","No alias","Brachypodium distachyon","CPR5 protein, putative","protein_coding" "Bradi3g57940","No alias","Brachypodium distachyon","THO complex, subunit 5","protein_coding" "Bradi3g59670","No alias","Brachypodium distachyon","ARG1-like 1","protein_coding" "Bradi4g06137","No alias","Brachypodium distachyon","PHD finger family protein","protein_coding" "Bradi4g07110","No alias","Brachypodium distachyon","cell division cycle 5","protein_coding" "Bradi4g10700","No alias","Brachypodium distachyon","AAA-type ATPase family protein","protein_coding" "Bradi4g12804","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi4g23417","No alias","Brachypodium distachyon","transcription coactivators","protein_coding" "Bradi4g25047","No alias","Brachypodium distachyon","Phox-associated domain;Phox-like;Sorting nexin, C-terminal","protein_coding" "Bradi4g27157","No alias","Brachypodium distachyon","RNA polymerase II transcription mediators","protein_coding" "Bradi4g27600","No alias","Brachypodium distachyon","RNA recognition motif (RRM)-containing protein","protein_coding" "Bradi4g28430","No alias","Brachypodium distachyon","Protein of unknown function (DUF810)","protein_coding" "Bradi4g31350","No alias","Brachypodium distachyon","ubiquitin family protein","protein_coding" "Bradi4g32790","No alias","Brachypodium distachyon","Protein of unknown function (DUF3550/UPF0682)","protein_coding" "Bradi4g34820","No alias","Brachypodium distachyon","hydroxyproline-rich glycoprotein family protein","protein_coding" "Bradi4g35301","No alias","Brachypodium distachyon","C2 domain-containing protein / GRAM domain-containing protein","protein_coding" "Bradi4g39400","No alias","Brachypodium distachyon","MIF4G domain-containing protein / MA3 domain-containing protein","protein_coding" "Bradi5g01055","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi5g07790","No alias","Brachypodium distachyon","vacuolar protein sorting 11","protein_coding" "Bradi5g10104","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi5g21740","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi5g24917","No alias","Brachypodium distachyon","DNA topoisomerase 1 beta","protein_coding" "Bradi5g25100","No alias","Brachypodium distachyon","Zinc finger C-x8-C-x5-C-x3-H type family protein","protein_coding" "Brara.A00080.1","No alias","Brassica rapa","deubiquitinase *(UBP3-4)","protein_coding" "Brara.A00386.1","No alias","Brassica rapa","component *(TAF8) of TFIId basal transcription regulation complex","protein_coding" "Brara.A00631.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A00690.1","No alias","Brassica rapa","component *(INB2) of INO80 chromatin remodeling complex","protein_coding" "Brara.A00778.1","No alias","Brassica rapa","EC_3.1 hydrolase acting on ester bond & phosphocholine phosphatase","protein_coding" "Brara.A01028.1","No alias","Brassica rapa","abscisic acid hydroxylase & EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen","protein_coding" "Brara.A01150.1","No alias","Brassica rapa","adrenodoxin of mitochondrial ISC system assembly phase","protein_coding" "Brara.A01262.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A01277.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A01658.1","No alias","Brassica rapa","DNA topoisomerase *(TOP1)","protein_coding" "Brara.A01909.1","No alias","Brassica rapa","bHLH-type transcription factor","protein_coding" "Brara.A02005.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A02143.1","No alias","Brassica rapa","bHLH-type transcription factor","protein_coding" "Brara.A02323.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A02513.1","No alias","Brassica rapa","component *(VIP5/RTF1) of PAF1C transcription initiation and elongation complex","protein_coding" "Brara.A02516.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A02815.1","No alias","Brassica rapa","mRNA cap methyltransferase & EC_2.1 transferase transferring one-carbon group","protein_coding" "Brara.A02948.1","No alias","Brassica rapa","solute transporter *(UmamiT)","protein_coding" "Brara.A03130.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A03254.1","No alias","Brassica rapa","RNA splicing factor *(SCL28/30/33)","protein_coding" "Brara.A03414.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A03681.1","No alias","Brassica rapa","monosaccharide transporter *(STP)","protein_coding" "Brara.B01042.1","No alias","Brassica rapa","E3 SUMO ubiquitin ligase *(SIZ1)","protein_coding" "Brara.B01065.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.B01329.1","No alias","Brassica rapa","DNA topoisomerase *(TOP1)","protein_coding" "Brara.B01330.1","No alias","Brassica rapa","DNA topoisomerase *(TOP1)","protein_coding" "Brara.B01785.1","No alias","Brassica rapa","gravity signalling protein factor *(ARG1)","protein_coding" "Brara.B01950.1","No alias","Brassica rapa","transcription factor *(CRF) & subgroup ERF-VI transcription factor","protein_coding" "Brara.B02379.1","No alias","Brassica rapa","Qc-type SYP5-group component of SNARE membrane fusion complex","protein_coding" "Brara.B02560.1","No alias","Brassica rapa","acyl-CoA thioesterase *(ACH) & EC_3.1 hydrolase acting on ester bond","protein_coding" "Brara.B02627.1","No alias","Brassica rapa","REM-type transcription factor","protein_coding" "Brara.B02878.1","No alias","Brassica rapa","scaffold component *(CUL4) of CUL4-DDB1 ubiquitination complexes","protein_coding" "Brara.B03286.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.B03392.1","No alias","Brassica rapa","component *(MED15) of tail module of MEDIATOR transcription co-activator complex","protein_coding" "Brara.B03620.1","No alias","Brassica rapa","methylated miRNA exoribonuclease *(SDN)","protein_coding" "Brara.B03753.1","No alias","Brassica rapa","component *(eS19) of small ribosomal-subunit (SSU) proteome","protein_coding" "Brara.B03895.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.B03991.1","No alias","Brassica rapa","component *(S2Lb/SWD2) of COMPASS histone trimethylation complex","protein_coding" "Brara.C00076.1","No alias","Brassica rapa","mRNA-binding adaptor ALY/Tho4 of TREX/THO mRNP trafficking complex","protein_coding" "Brara.C00200.1","No alias","Brassica rapa","component *(MED26) of MEDIATOR transcription co-activator complex","protein_coding" "Brara.C00208.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.C00345.1","No alias","Brassica rapa","FAD synthetase *(RibF)","protein_coding" "Brara.C00389.1","No alias","Brassica rapa","gamete fusion factor *(DMP8-9)","protein_coding" "Brara.C01108.1","No alias","Brassica rapa","MAP3K-RAF protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.C01684.1","No alias","Brassica rapa","component *(AUG2) of Augmin gamma-TuRC recruiting complex","protein_coding" "Brara.C01884.1","No alias","Brassica rapa","class II ARF-GAP ARF-GTPase-activating protein","protein_coding" "Brara.C01947.1","No alias","Brassica rapa","TFIIs transcription elongation factor","protein_coding" "Brara.C02389.1","No alias","Brassica rapa","catalytic component of PP1 phosphatase & EC_3.1 hydrolase acting on ester bond","protein_coding" "Brara.C02523.1","No alias","Brassica rapa","carbon dioxide signal transducer kinase *(CBC) & MAP3K-RAF protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.C02633.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.C02733.1","No alias","Brassica rapa","DUF26 protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.C02846.1","No alias","Brassica rapa","component *(SecA1) of thylakoid membrane Sec1 translocation system","protein_coding" "Brara.C03278.1","No alias","Brassica rapa","lipid transfer protein *(ORP3a)","protein_coding" "Brara.C03370.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.C03705.1","No alias","Brassica rapa","actin filament protein","protein_coding" "Brara.C03930.1","No alias","Brassica rapa","transcription factor *(PHR1) & GARP subgroup PHL transcription factor","protein_coding" "Brara.C04387.1","No alias","Brassica rapa","DNA bending architectural protein *(HMG-B)","protein_coding" "Brara.D00010.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.D00335.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.D00448.1","No alias","Brassica rapa","phosphate transporter *(PHT1) & phosphate transporter *(PHT1)","protein_coding" "Brara.D01735.1","No alias","Brassica rapa","EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.D01783.1","No alias","Brassica rapa","PSY precursor polypeptide","protein_coding" "Brara.D01883.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.D02410.1","No alias","Brassica rapa","miRNA uridylyltransferase *(HESO1)","protein_coding" "Brara.D02841.1","No alias","Brassica rapa","regulatory protein *(CP12) of GAPDH activity","protein_coding" "Brara.E00297.1","No alias","Brassica rapa","catalytic component *(PP2A-phosphatase) of TTP preprophase band formation complex & catalytic component C of PP2A phosphatase complexes & EC_3.1 hydrolase acting on ester bond","protein_coding" "Brara.E00379.1","No alias","Brassica rapa","protein factor *(U5-40kDa/snRNP40) of MAC spliceosome-associated complex","protein_coding" "Brara.E00384.1","No alias","Brassica rapa","EC_2.4 glycosyltransferase","protein_coding" "Brara.E00644.1","No alias","Brassica rapa","solute transporter *(AAAP)","protein_coding" "Brara.E01326.1","No alias","Brassica rapa","catalytic component *(PS) of gamma secretase complex","protein_coding" "Brara.E01450.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.E01903.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.E02584.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.E02598.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.E02771.1","No alias","Brassica rapa","methylation reader *(ECT)","protein_coding" "Brara.E03173.1","No alias","Brassica rapa","transcriptional co-regulator *(Oberon)","protein_coding" "Brara.E03187.1","No alias","Brassica rapa","arogenate dehydratase *(ADT)","protein_coding" "Brara.E03194.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.E03326.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.E03525.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.E03553.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.F01098.1","No alias","Brassica rapa","component *(DRB7) of DRB4-DRB7.1 siRNA biogenesis regulator complex","protein_coding" "Brara.F01535.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.F01584.1","No alias","Brassica rapa","substrate adaptor *(AHT) of CUL3-BTB E3 ubiquitin ligase complex","protein_coding" "Brara.F01901.1","No alias","Brassica rapa","deadenylase component *(CAF1) of mRNA deadenylation CCR4-NOT complex","protein_coding" "Brara.F02315.1","No alias","Brassica rapa","chaperone component *(SDJ) of SUVH-SDJ methylation reader complex","protein_coding" "Brara.F02364.1","No alias","Brassica rapa","elicitor peptide precursor *(proPEP))","protein_coding" "Brara.F02724.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.F02922.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.F03055.1","No alias","Brassica rapa","subfamily ABCB transporter","protein_coding" "Brara.F03066.1","No alias","Brassica rapa","component *(AUG5) of Augmin gamma-TuRC recruiting complex","protein_coding" "Brara.F03504.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.G00064.1","No alias","Brassica rapa","regulatory protein *(COV1) of vacuolar protein sorting","protein_coding" "Brara.G00345.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.G00374.1","No alias","Brassica rapa","triacylglycerol lipase *(LIP)","protein_coding" "Brara.G00465.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.G00858.1","No alias","Brassica rapa","RanGDP-specific nuclear import factor *(NTF2)","protein_coding" "Brara.G02245.1","No alias","Brassica rapa","NAC-type transcription factor","protein_coding" "Brara.G02889.1","No alias","Brassica rapa","MYB class-R2R3 subgroup-21 transcription factor","protein_coding" "Brara.G03092.1","No alias","Brassica rapa","storage vacuole protein sorting receptor *(RMR)","protein_coding" "Brara.H00180.1","No alias","Brassica rapa","EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.H01351.1","No alias","Brassica rapa","nuclear lamina CRWN-interacting protein *(KAKU4)","protein_coding" "Brara.H01361.1","No alias","Brassica rapa","gamma-glutamyl cyclotransferase","protein_coding" "Brara.H01420.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.H01709.1","No alias","Brassica rapa","effector receptor *(NLR)","protein_coding" "Brara.H01775.1","No alias","Brassica rapa","component *(TRAPPC12) of TRAPP complex","protein_coding" "Brara.H02070.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.H02075.1","No alias","Brassica rapa","E3 ubiquitin ligase","protein_coding" "Brara.H02741.1","No alias","Brassica rapa","component *(eIF3h) of eIF3 mRNA-to-PIC binding complex","protein_coding" "Brara.H03005.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.H03093.1","No alias","Brassica rapa","meiotic crossover accessory protein *(BVF1)","protein_coding" "Brara.I00248.1","No alias","Brassica rapa","associated modulator of MCM replicative DNA helicase complex","protein_coding" "Brara.I00335.1","No alias","Brassica rapa","pectin methylesterase","protein_coding" "Brara.I01501.1","No alias","Brassica rapa","EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.I01715.1","No alias","Brassica rapa","CDK9 protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.I02535.1","No alias","Brassica rapa","component *(ELP6) of ELONGATOR transcription elongation complex","protein_coding" "Brara.I02978.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.I03262.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.I03780.1","No alias","Brassica rapa","assembly factor PSA3 involved in PS-I assembly","protein_coding" "Brara.I05159.1","No alias","Brassica rapa","tyrosyl-DNA phosphodiesterase *(TDP2)","protein_coding" "Brara.I05635.1","No alias","Brassica rapa","signal peptidase *(SPP)","protein_coding" "Brara.I05636.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J00026.1","No alias","Brassica rapa","acyl-CoA thioesterase *(ACH) & EC_3.1 hydrolase acting on ester bond","protein_coding" "Brara.J00206.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J00291.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J00978.1","No alias","Brassica rapa","DNA topoisomerase *(TOP1)","protein_coding" "Brara.J01079.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J01209.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J01610.1","No alias","Brassica rapa","nucleocytoplasmic import karyopherin *(IMB3)","protein_coding" "Brara.J01731.1","No alias","Brassica rapa","effector receptor *(NLR)","protein_coding" "Brara.J02162.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J02344.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J02426.1","No alias","Brassica rapa","component *(Pex1) of Pex1-Pex6 subcomplex","protein_coding" "Brara.J02577.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J02709.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J02719.1","No alias","Brassica rapa","regulatory protein *(ADR) of TNL-mediated effector-triggered immunity","protein_coding" "Brara.J02799.1","No alias","Brassica rapa","3-deoxy-D-manno-octulosonic acid (Kdo) transferase *(KdtA)","protein_coding" "Brara.J02906.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.K00449.1","No alias","Brassica rapa","glycolate oxidase & EC_1.1 oxidoreductase acting on CH-OH group of donor","protein_coding" "Brara.K01217.1","No alias","Brassica rapa","Unknown function","protein_coding" "Cre01.g003100","No alias","Chlamydomonas reinhardtii","DNAJ heat shock N-terminal domain-containing protein","protein_coding" "Cre01.g040379","No alias","Chlamydomonas reinhardtii","RNA helicase, putative","protein_coding" "Cre01.g049550","No alias","Chlamydomonas reinhardtii","Pleckstrin homology (PH) domain superfamily protein","protein_coding" "Cre02.g075650","No alias","Chlamydomonas reinhardtii","CCCH-type zinc fingerfamily protein with RNA-binding domain","protein_coding" "Cre02.g092050","No alias","Chlamydomonas reinhardtii","Mitochondrial substrate carrier family protein","protein_coding" "Cre02.g098350","No alias","Chlamydomonas reinhardtii","Laccase/Diphenol oxidase family protein","protein_coding" "Cre02.g107100","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre02.g115700","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre03.g178600","No alias","Chlamydomonas reinhardtii","DNA topoisomerase 1 beta","protein_coding" "Cre03.g179100","No alias","Chlamydomonas reinhardtii","Ubiquitin fusion degradation UFD1 family protein","protein_coding" "Cre03.g194800","No alias","Chlamydomonas reinhardtii","CLP-similar protein 3","protein_coding" "Cre04.g212650","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding" "Cre05.g241100","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre06.g248750","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre06.g263700","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre06.g267150","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding" "Cre06.g274500","No alias","Chlamydomonas reinhardtii","polyadenylate-binding protein 1","protein_coding" "Cre06.g281100","No alias","Chlamydomonas reinhardtii","Protein kinase family protein","protein_coding" "Cre06.g305050","No alias","Chlamydomonas reinhardtii","endonuclease/exonuclease/phosphatase family protein","protein_coding" "Cre07.g313185","No alias","Chlamydomonas reinhardtii","RNA polymerase II, Rpb4, core protein","protein_coding" "Cre07.g341650","No alias","Chlamydomonas reinhardtii","C2H2 and C2HC zinc fingers superfamily protein","protein_coding" "Cre07.g342352","No alias","Chlamydomonas reinhardtii","DNA directed RNA polymerase, 7 kDa subunit","protein_coding" "Cre08.g369350","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre08.g375850","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre08.g384950","No alias","Chlamydomonas reinhardtii","RNA-binding (RRM/RBD/RNP motifs) family protein","protein_coding" "Cre09.g387467","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre09.g400050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre09.g410200","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre09.g416350","No alias","Chlamydomonas reinhardtii","nucleosome assembly protein1;1","protein_coding" "Cre10.g426335","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre10.g435600","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre10.g437850","No alias","Chlamydomonas reinhardtii","CAP-binding protein 20","protein_coding" "Cre10.g441050","No alias","Chlamydomonas reinhardtii","alfin-like 1","protein_coding" "Cre10.g442400","No alias","Chlamydomonas reinhardtii","G10 family protein","protein_coding" "Cre10.g462700","No alias","Chlamydomonas reinhardtii","Cleavage/polyadenylation specificity factor, 25kDa subunit","protein_coding" "Cre11.g467604","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre12.g498450","No alias","Chlamydomonas reinhardtii","Regulator of chromosome condensation (RCC1) family protein","protein_coding" "Cre12.g502400","No alias","Chlamydomonas reinhardtii","Protein of unknown function (DUF300)","protein_coding" "Cre12.g503400","No alias","Chlamydomonas reinhardtii","PRP38 family protein","protein_coding" "Cre12.g529200","No alias","Chlamydomonas reinhardtii","zinc knuckle (CCHC-type) family protein","protein_coding" "Cre12.g559704","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre13.g588550","No alias","Chlamydomonas reinhardtii","syntaxin of plants 131","protein_coding" "Cre16.g665550","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre16.g670100","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre16.g680100","No alias","Chlamydomonas reinhardtii","methyltransferases","protein_coding" "Cre16.g682650","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre16.g687100","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre16.g693819","No alias","Chlamydomonas reinhardtii","Protein of unknown function (DUF506)","protein_coding" "Cre17.g718100","No alias","Chlamydomonas reinhardtii","Sec14p-like phosphatidylinositol transfer family protein","protein_coding" "evm.model.contig_2017.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2025.30","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2054.8","No alias","Porphyridium purpureum","(at1g66900 : 155.0) alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF818 (InterPro:IPR008536); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G38220.3); Has 3645 Blast hits to 3636 proteins in 755 species: Archae - 4; Bacteria - 1186; Metazoa - 604; Fungi - 183; Plants - 290; Viruses - 6; Other Eukaryotes - 1372 (source: NCBI BLink). & (reliability: 310.0) & (original description: no original description)","protein_coding" "evm.model.contig_2060.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2068.23","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2077.13","No alias","Porphyridium purpureum","(at2g13370 : 595.0) chromatin remodeling 5 (CHR5); FUNCTIONS IN: chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 38529 Blast hits to 28045 proteins in 2467 species: Archae - 189; Bacteria - 9973; Metazoa - 8887; Fungi - 6205; Plants - 2508; Viruses - 447; Other Eukaryotes - 10320 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 419.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1190.0) & (original description: no original description)","protein_coding" "evm.model.contig_2083.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2090.20","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2090.37","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2093.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2094.8","No alias","Porphyridium purpureum","(at4g39910 : 213.0) Encodes a nuclear ubiquitin-specific protease.; ubiquitin-specific protease 3 (UBP3); CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 4 (TAIR:AT2G22310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 426.0) & (original description: no original description)","protein_coding" "evm.model.contig_2096.17","No alias","Porphyridium purpureum","(at2g42160 : 83.2) BRAP2 RING ZnF UBP domain-containing protein 1 (BRIZ1); FUNCTIONS IN: catalytic activity, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCA1-associated 2 (InterPro:IPR011422), Zinc finger, UBP-type (InterPro:IPR001607), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G26000.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 166.4) & (original description: no original description)","protein_coding" "evm.model.contig_2098.14","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2115.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2116.7","No alias","Porphyridium purpureum","(at1g71440 : 94.0) Encodes tubulin-folding cofactor E. Mutant embryos consist of one or a few grossly enlarged cells, surrounded by an endosperm that fails to cellularize and contains a few big nuclei.; PFIFFERLING (PFI); INVOLVED IN: tubulin complex assembly, embryo development ending in seed dormancy, cytokinesis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytoskeleton-associated protein, CAP-Gly (InterPro:IPR000938); Has 7270 Blast hits to 6366 proteins in 489 species: Archae - 4; Bacteria - 1949; Metazoa - 3435; Fungi - 492; Plants - 819; Viruses - 0; Other Eukaryotes - 571 (source: NCBI BLink). & (reliability: 188.0) & (original description: no original description)","protein_coding" "evm.model.contig_2118.10","No alias","Porphyridium purpureum","(at1g08540 : 233.0) Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.; RNApolymerase sigma subunit 2 (SIG2); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma-70 region 1.2 (InterPro:IPR009042), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma-subunit F (TAIR:AT2G36990.1); Has 24116 Blast hits to 24030 proteins in 2811 species: Archae - 0; Bacteria - 17119; Metazoa - 4; Fungi - 2; Plants - 243; Viruses - 12; Other Eukaryotes - 6736 (source: NCBI BLink). & (reliability: 466.0) & (original description: no original description)","protein_coding" "evm.model.contig_2122.23","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2132.9","No alias","Porphyridium purpureum","(at3g06010 : 612.0) Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein. AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.; ATCHR12; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to water deprivation, response to salt stress, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT5G19310.1); Has 23556 Blast hits to 19403 proteins in 2220 species: Archae - 141; Bacteria - 6122; Metazoa - 5759; Fungi - 4503; Plants - 1859; Viruses - 268; Other Eukaryotes - 4904 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 465.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1224.0) & (original description: no original description)","protein_coding" "evm.model.contig_2157.13","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2186.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2190.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2194.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2281.16","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2282.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2284.16","No alias","Porphyridium purpureum","(at1g59760 : 812.0) RNA helicase, ATP-dependent, SK12/DOB1 protein; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DSH, C-terminal (InterPro:IPR012961), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), RNA helicase, ATP-dependent, SK12/DOB1 (InterPro:IPR016438), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase, ATP-dependent, SK12/DOB1 protein (TAIR:AT2G06990.1); Has 9909 Blast hits to 8438 proteins in 1290 species: Archae - 828; Bacteria - 3072; Metazoa - 1170; Fungi - 1231; Plants - 476; Viruses - 32; Other Eukaryotes - 3100 (source: NCBI BLink). & (reliability: 1624.0) & (original description: no original description)","protein_coding" "evm.model.contig_2284.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2285.5","No alias","Porphyridium purpureum","(at1g31810 : 118.0) Encodes the Type II Arabidopsis formin14. Interacts with microtubules and microfilaments to regulate cell division.; Formin Homology 14 (AFH14); FUNCTIONS IN: microtubule binding, actin binding, actin filament binding; INVOLVED IN: microsporogenesis; LOCATED IN: preprophase band, phragmoplast, spindle; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Actin-binding FH2 (InterPro:IPR015425), Tensin phosphatase, C2 domain (InterPro:IPR014020); BEST Arabidopsis thaliana protein match is: actin binding (TAIR:AT5G07740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description)","protein_coding" "evm.model.contig_2339.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2494.36","No alias","Porphyridium purpureum","(at5g06680 : 153.0) Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.; spindle pole body component 98 (SPC98); CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259), Gamma tubulin complex protein 3 (InterPro:IPR015697); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT5G17410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 306.0) & (original description: no original description)","protein_coding" "evm.model.contig_2502.14","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2707.3","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding" "evm.model.contig_2715.1","No alias","Porphyridium purpureum","(at5g55580 : 114.0) Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT1G78930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 228.0) & (original description: no original description)","protein_coding" "evm.model.contig_3397.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3401.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3412.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3415.6","No alias","Porphyridium purpureum","(at1g80930 : 286.0) MIF4G domain-containing protein / MA3 domain-containing protein; FUNCTIONS IN: RNA binding, binding; INVOLVED IN: translation, RNA metabolic process; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: Initiation factor eIF-4 gamma, MA3 (TAIR:AT1G52325.1); Has 51676 Blast hits to 28577 proteins in 1484 species: Archae - 86; Bacteria - 5039; Metazoa - 22313; Fungi - 6500; Plants - 3817; Viruses - 357; Other Eukaryotes - 13564 (source: NCBI BLink). & (reliability: 572.0) & (original description: no original description)","protein_coding" "evm.model.contig_3416.13","No alias","Porphyridium purpureum","(at5g03430 : 187.0) phosphoadenosine phosphosulfate (PAPS) reductase family protein; FUNCTIONS IN: transferase activity; INVOLVED IN: Mo-molybdopterin cofactor biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Phosphoadenosine phosphosulphate reductase (InterPro:IPR002500), Molybdopterin binding (InterPro:IPR001453); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 374.0) & (original description: no original description)","protein_coding" "evm.model.contig_3448.10","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3450.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3450.14","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3450.15","No alias","Porphyridium purpureum","(at1g66730 : 353.0) Encodes a novel plant specific DNA ligase that is involved in seed germination and DNA repair.; DNA LIGASE 6 (LIG6); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, seed germination, DNA recombination, DNA replication; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), DNA repair metallo-beta-lactamase (InterPro:IPR011084), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059); BEST Arabidopsis thaliana protein match is: DNA ligase 1 (TAIR:AT1G08130.1); Has 4468 Blast hits to 4373 proteins in 907 species: Archae - 366; Bacteria - 1648; Metazoa - 644; Fungi - 681; Plants - 268; Viruses - 157; Other Eukaryotes - 704 (source: NCBI BLink). & (q7x7e9|dnl4_orysa : 90.5) Putative DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (Polydeoxyribonucleotide synthase [ATP] 4) - Oryza sativa (Rice) & (reliability: 706.0) & (original description: no original description)","protein_coding" "evm.model.contig_3451.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3468.7","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3490.10","No alias","Porphyridium purpureum","(at5g64380 : 306.0) Inositol monophosphatase family protein; FUNCTIONS IN: phosphoric ester hydrolase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fructose-1,6-bisphosphatase (InterPro:IPR000146); BEST Arabidopsis thaliana protein match is: high cyclic electron flow 1 (TAIR:AT3G54050.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p46275|f16p1_pea : 248.0) Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) - Pisum sativum (Garden pea) & (reliability: 612.0) & (original description: no original description)","protein_coding" "evm.model.contig_3545.2","No alias","Porphyridium purpureum","(at4g36650 : 89.7) Encodes a protein with similarity to the general transcription factor TFIIB. pBRP binds rDNA sequences in vitro. pBRP has been localized to the outer face of the plastid membrane with GFP fusion however, under conditions of proteosome inhibition it is found in the nucleus.; plant-specific TFIIB-related protein (PBRP); FUNCTIONS IN: RNA polymerase II transcription factor activity, rDNA binding; INVOLVED IN: translational initiation, regulation of transcription, DNA-dependent, transcription initiation; LOCATED IN: plastid outer membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: transcription factor IIB (TAIR:AT2G41630.1); Has 1297 Blast hits to 1296 proteins in 319 species: Archae - 504; Bacteria - 1; Metazoa - 214; Fungi - 180; Plants - 140; Viruses - 3; Other Eukaryotes - 255 (source: NCBI BLink). & (reliability: 179.4) & (original description: no original description)","protein_coding" "evm.model.contig_3550.2","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding" "evm.model.contig_3555.3","No alias","Porphyridium purpureum","(at5g12130 : 172.0) PIGMENT DEFECTIVE 149 (PDE149); CONTAINS InterPro DOMAIN/s: Integral membrane protein TerC (InterPro:IPR005496), Integral membrane protein TerC, riboswitch-linked (InterPro:IPR022369); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 344.0) & (original description: no original description)","protein_coding" "evm.model.contig_3562.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3576.1","No alias","Porphyridium purpureum","(at5g55310 : 481.0) Encodes one of two Arabidopsis type-I DNA topoisomerase I genes. Reducing the level of expression of this gene in a top1alpha (At5g55300) mutant background causes seedling lethality.; DNA topoisomerase 1 beta (TOP1BETA); FUNCTIONS IN: DNA topoisomerase type I activity; INVOLVED IN: DNA topological change; LOCATED IN: membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, DNA binding, mixed alpha/beta motif, eukaryotic-type (InterPro:IPR013030), DNA topoisomerase I, DNA binding, eukaryotic-type (InterPro:IPR008336), DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010); BEST Arabidopsis thaliana protein match is: DNA topoisomerase I alpha (TAIR:AT5G55300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p93119|top1_dauca : 401.0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) - Daucus carota (Carrot) & (reliability: 962.0) & (original description: no original description)","protein_coding" "evm.model.contig_3585.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3606.2","No alias","Porphyridium purpureum","(at2g38130 : 144.0) Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes.; ATMAK3; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT5G13780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 288.0) & (original description: no original description)","protein_coding" "evm.model.contig_3606.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_440.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4405.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4417.4","No alias","Porphyridium purpureum","(at1g18260 : 89.0) HCP-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G73570.1); Has 24350 Blast hits to 8436 proteins in 1359 species: Archae - 0; Bacteria - 17163; Metazoa - 848; Fungi - 960; Plants - 547; Viruses - 27; Other Eukaryotes - 4805 (source: NCBI BLink). & (reliability: 178.0) & (original description: no original description)","protein_coding" "evm.model.contig_4418.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4419.4","No alias","Porphyridium purpureum","(at4g21540 : 120.0) Encodes a sphingosine kinase, also has enzyme activity towards other plant long-chain sphingoid bases. Involved in guard cell ABA signalling and seed germination.; sphingosine kinase 1 (SPHK1); FUNCTIONS IN: diacylglycerol kinase activity, sphinganine kinase activity, D-erythro-sphingosine kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, seed germination, response to abscisic acid stimulus; LOCATED IN: plant-type vacuole membrane, vacuole; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic domain (InterPro:IPR001206); BEST Arabidopsis thaliana protein match is: Diacylglycerol kinase family protein (TAIR:AT4G21534.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 222.0) & (original description: no original description)","protein_coding" "evm.model.contig_4423.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4424.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_443.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_443.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4456.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4467.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4495.12","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4509.1","No alias","Porphyridium purpureum","(at1g33320 : 182.0) Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: pyridoxal phosphate binding, cystathionine gamma-synthase activity, catalytic activity; INVOLVED IN: methionine biosynthetic process, cellular amino acid metabolic process; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Cys/Met metabolism, pyridoxal phosphate-dependent enzyme (InterPro:IPR000277), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT3G01120.1); Has 20280 Blast hits to 20270 proteins in 2456 species: Archae - 214; Bacteria - 11714; Metazoa - 220; Fungi - 816; Plants - 267; Viruses - 0; Other Eukaryotes - 7049 (source: NCBI BLink). & (reliability: 364.0) & (original description: no original description)","protein_coding" "evm.model.contig_4515.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4532.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_462.5","No alias","Porphyridium purpureum","(at2g22870 : 95.5) embryo defective 2001 (EMB2001); FUNCTIONS IN: GTP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein, ribosome biogenesis, YsxC (InterPro:IPR019987); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G11480.1); Has 7972 Blast hits to 7922 proteins in 2512 species: Archae - 103; Bacteria - 5806; Metazoa - 98; Fungi - 230; Plants - 215; Viruses - 0; Other Eukaryotes - 1520 (source: NCBI BLink). & (reliability: 191.0) & (original description: no original description)","protein_coding" "evm.model.contig_469.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_479.8","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_488.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_493.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_503.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_519.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_522.10","No alias","Porphyridium purpureum","(at4g27630 : 139.0) Encodes a GPCR-type G protein receptor with nine predicted transmembrane domains. The protein binds abscisic acid (ABA) and is predicted to function as an ABA receptor. It has GTP-binding and GTPase activity and binds to ABA more effectively in the presence of GDP. GTG2 binds to GPA1, the alpha subunit of the heterotrimeric G protein. GPA1 (in its GTP-bound state) affects the GTP binding and GTPase activity of GTG2 and may act to down-regulate GTG2 binding to ABA. GTG2 is widely expressed throughout the plant and appears to be involved in the regulation of several ABA-dependent responses including seed germination, plant development, and promotion of stomatal closure. GTG2 transcript levels do not appear to change in response to ABA or abiotic stresses.; GPCR-type G protein 2 (GTG2); CONTAINS InterPro DOMAIN/s: GPCR 89-related (InterPro:IPR015672), Protein of unknown function DUF3735 (InterPro:IPR022535); BEST Arabidopsis thaliana protein match is: GPCR-type G protein 1 (TAIR:AT1G64990.2). & (reliability: 278.0) & (original description: no original description)","protein_coding" "evm.model.contig_542.5","No alias","Porphyridium purpureum","(at1g45160 : 338.0) Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G17850.1); Has 126537 Blast hits to 124799 proteins in 4593 species: Archae - 166; Bacteria - 15103; Metazoa - 47179; Fungi - 12961; Plants - 29525; Viruses - 530; Other Eukaryotes - 21073 (source: NCBI BLink). & (p47997|g11a_orysa : 176.0) Protein kinase G11A (EC 2.7.11.1) - Oryza sativa (Rice) & (reliability: 676.0) & (original description: no original description)","protein_coding" "evm.model.contig_544.8","No alias","Porphyridium purpureum","(at4g32060 : 106.0) calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); Has 1096 Blast hits to 1078 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 829; Fungi - 82; Plants - 97; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink). & (reliability: 212.0) & (original description: no original description)","protein_coding" "evm.model.contig_568.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_583.8","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_588.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_589.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_594.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_623.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_625.1","No alias","Porphyridium purpureum","(at2g38770 : 95.1) EMBRYO DEFECTIVE 2765 (EMB2765); LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RNA helicase, putative (TAIR:AT5G47010.1); Has 4121 Blast hits to 3614 proteins in 689 species: Archae - 125; Bacteria - 655; Metazoa - 959; Fungi - 1056; Plants - 630; Viruses - 0; Other Eukaryotes - 696 (source: NCBI BLink). & (reliability: 190.2) & (original description: no original description)","protein_coding" "evm.model.contig_693.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_759.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "Glyma.01G032100","No alias","Glycine max","Adaptor protein complex AP-1, gamma subunit","protein_coding" "Glyma.01G076000","No alias","Glycine max","DNA-directed RNA polymerase family protein","protein_coding" "Glyma.01G145400","No alias","Glycine max","elongation factor Ts family protein","protein_coding" "Glyma.01G175600","No alias","Glycine max","succinate dehydrogenase 1-1","protein_coding" "Glyma.01G208600","No alias","Glycine max","G2484-1 protein","protein_coding" "Glyma.01G226700","No alias","Glycine max","ALBINA 1","protein_coding" "Glyma.01G229700","No alias","Glycine max","Pre-mRNA-splicing factor 3","protein_coding" "Glyma.01G244900","No alias","Glycine max","presequence protease 2","protein_coding" "Glyma.02G075900","No alias","Glycine max","Regulator of Vps4 activity in the MVB pathway protein","protein_coding" "Glyma.02G138600","No alias","Glycine max","Function unknown","protein_coding" "Glyma.02G141301","No alias","Glycine max","Transmembrane amino acid transporter family protein","protein_coding" "Glyma.02G145200","No alias","Glycine max","kinase interacting (KIP1-like) family protein","protein_coding" "Glyma.02G248232","No alias","Glycine max","Protein of unknown function, DUF547","protein_coding" "Glyma.02G307500","No alias","Glycine max","Function unknown","protein_coding" "Glyma.03G075300","No alias","Glycine max","Disease resistance protein (TIR-NBS-LRR class) family","protein_coding" "Glyma.03G106500","No alias","Glycine max","eukaryotic translation initiation factor 4G","protein_coding" "Glyma.03G219500","No alias","Glycine max","Prolyl oligopeptidase family protein","protein_coding" "Glyma.03G228500","No alias","Glycine max","Putative endonuclease or glycosyl hydrolase","protein_coding" "Glyma.03G250400","No alias","Glycine max","Ankyrin repeat family protein","protein_coding" "Glyma.04G001600","No alias","Glycine max","Alanyl-tRNA synthetase, class IIc","protein_coding" "Glyma.04G006001","No alias","Glycine max","Phosphorylase superfamily protein","protein_coding" "Glyma.04G025400","No alias","Glycine max","Plant protein of unknown function (DUF869)","protein_coding" "Glyma.04G073900","No alias","Glycine max","DDB1-CUL4 associated factor 1","protein_coding" "Glyma.04G200400","No alias","Glycine max","CLPC homologue 1","protein_coding" "Glyma.05G000600","No alias","Glycine max","Transducin/WD40 repeat-like superfamily protein","protein_coding" "Glyma.05G039400","No alias","Glycine max","modifier of snc1","protein_coding" "Glyma.05G061500","No alias","Glycine max","DWNN domain, a CCHC-type zinc finger","protein_coding" "Glyma.05G095900","No alias","Glycine max","heat shock factor 4","protein_coding" "Glyma.05G109300","No alias","Glycine max","little nuclei4","protein_coding" "Glyma.05G131500","No alias","Glycine max","chromatin remodeling 4","protein_coding" "Glyma.05G135000","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding" "Glyma.05G143800","No alias","Glycine max","auxin response factor 8","protein_coding" "Glyma.05G194500","No alias","Glycine max","Chaperone DnaJ-domain superfamily protein","protein_coding" "Glyma.06G044100","No alias","Glycine max","RING/U-box superfamily protein","protein_coding" "Glyma.06G072100","No alias","Glycine max","Flavin-binding monooxygenase family protein","protein_coding" "Glyma.06G074700","No alias","Glycine max","Function unknown","protein_coding" "Glyma.06G127600","No alias","Glycine max","Function unknown","protein_coding" "Glyma.06G133300","No alias","Glycine max","cytochrome B5 isoform E","protein_coding" "Glyma.06G174000","No alias","Glycine max","relative of early flowering 6","protein_coding" "Glyma.06G183800","No alias","Glycine max","ARM repeat superfamily protein","protein_coding" "Glyma.06G190400","No alias","Glycine max","voltage dependent anion channel 1","protein_coding" "Glyma.06G210400","No alias","Glycine max","Transcription factor TFIIE, alpha subunit","protein_coding" "Glyma.06G217500","No alias","Glycine max","methyl-CPG-binding domain 10","protein_coding" "Glyma.06G218700","No alias","Glycine max","Function unknown","protein_coding" "Glyma.06G224300","No alias","Glycine max","methyl-CPG-binding domain 10","protein_coding" "Glyma.07G056700","No alias","Glycine max","nucleotidyltransferases","protein_coding" "Glyma.07G168500","No alias","Glycine max","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein","protein_coding" "Glyma.07G223700","No alias","Glycine max","Cyclin family protein","protein_coding" "Glyma.07G250500","No alias","Glycine max","Thioredoxin superfamily protein","protein_coding" "Glyma.08G051900","No alias","Glycine max","transducin family protein / WD-40 repeat family protein","protein_coding" "Glyma.08G055400","No alias","Glycine max","Outer arm dynein light chain 1 protein","protein_coding" "Glyma.08G086100","No alias","Glycine max","chromatin remodeling 4","protein_coding" "Glyma.08G193200","No alias","Glycine max","Root hair defective 3 GTP-binding protein (RHD3)","protein_coding" "Glyma.08G256200","No alias","Glycine max","Protein kinase superfamily protein","protein_coding" "Glyma.08G304300","No alias","Glycine max","transducin family protein / WD-40 repeat family protein","protein_coding" "Glyma.08G305900","No alias","Glycine max","Mitochondrial transcription termination factor family protein","protein_coding" "Glyma.08G314900","No alias","Glycine max","Protein of unknown function (DUF594)","protein_coding" "Glyma.08G338600","No alias","Glycine max","UDP-Glycosyltransferase superfamily protein","protein_coding" "Glyma.08G340500","No alias","Glycine max","eukaryotic translation initiation factor 4G","protein_coding" "Glyma.08G352600","No alias","Glycine max","Helicase/SANT-associated, DNA binding protein","protein_coding" "Glyma.09G021400","No alias","Glycine max","Root hair defective 3 GTP-binding protein (RHD3)","protein_coding" "Glyma.09G116000","No alias","Glycine max","Octicosapeptide/Phox/Bem1p family protein","protein_coding" "Glyma.09G136800","No alias","Glycine max","Function unknown","protein_coding" "Glyma.09G139600","No alias","Glycine max","CAP160 protein","protein_coding" "Glyma.09G193300","No alias","Glycine max","elongation factor Ts family protein","protein_coding" "Glyma.09G206200","No alias","Glycine max","myb domain protein 39","protein_coding" "Glyma.09G223300","No alias","Glycine max","DNA topoisomerase 1 beta","protein_coding" "Glyma.09G230300","No alias","Glycine max","Leucine-rich repeat protein kinase family protein","protein_coding" "Glyma.09G235300","No alias","Glycine max","myb domain protein 113","protein_coding" "Glyma.10G000300","No alias","Glycine max","HXXXD-type acyl-transferase family protein","protein_coding" "Glyma.10G056000","No alias","Glycine max","SAUR-like auxin-responsive protein family","protein_coding" "Glyma.10G130800","No alias","Glycine max","triglyceride lipases;triglyceride lipases","protein_coding" "Glyma.10G155100","No alias","Glycine max","Function unknown","protein_coding" "Glyma.10G232800","No alias","Glycine max","Protein kinase superfamily protein","protein_coding" "Glyma.10G280000","No alias","Glycine max","indeterminate(ID)-domain 5","protein_coding" "Glyma.10G298900","No alias","Glycine max","hydroxyproline-rich glycoprotein family protein","protein_coding" "Glyma.11G027700","No alias","Glycine max","leucoanthocyanidin dioxygenase","protein_coding" "Glyma.11G033600","No alias","Glycine max","G2484-1 protein","protein_coding" "Glyma.11G035100","No alias","Glycine max","Integrase-type DNA-binding superfamily protein","protein_coding" "Glyma.11G042400","No alias","Glycine max","non-intrinsic ABC protein 6","protein_coding" "Glyma.11G084700","No alias","Glycine max","ubiquitin family protein","protein_coding" "Glyma.11G118900","No alias","Glycine max","DNA-binding family protein","protein_coding" "Glyma.11G136000","No alias","Glycine max","splicing factor PWI domain-containing protein","protein_coding" "Glyma.11G187500","No alias","Glycine max","MAR binding filament-like protein 1","protein_coding" "Glyma.12G010300","No alias","Glycine max","transducin family protein / WD-40 repeat family protein","protein_coding" "Glyma.12G013500","No alias","Glycine max","DNA topoisomerase I alpha","protein_coding" "Glyma.12G013600","No alias","Glycine max","DNA topoisomerase I alpha","protein_coding" "Glyma.12G059700","No alias","Glycine max","splicing factor PWI domain-containing protein","protein_coding" "Glyma.12G226900","No alias","Glycine max","Function unknown","protein_coding" "Glyma.13G174800","No alias","Glycine max","Protein kinase superfamily protein","protein_coding" "Glyma.13G220000","No alias","Glycine max","multidrug resistance-associated protein 2","protein_coding" "Glyma.13G221400","No alias","Glycine max","auxin response factor 8","protein_coding" "Glyma.13G226900","No alias","Glycine max","Function unknown","protein_coding" "Glyma.13G235300","No alias","Glycine max","homeobox-1","protein_coding" "Glyma.13G243600","No alias","Glycine max","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding" "Glyma.13G265000","No alias","Glycine max","light-regulated zinc finger protein 1","protein_coding" "Glyma.13G320200","No alias","Glycine max","Adaptor protein complex AP-2, alpha subunit","protein_coding" "Glyma.13G356900","No alias","Glycine max","golgin candidate 5","protein_coding" "Glyma.14G005200","No alias","Glycine max","fimbrin-like protein 2","protein_coding" "Glyma.14G005500","No alias","Glycine max","Function unknown","protein_coding" "Glyma.14G006800","No alias","Glycine max","zinc-dependent activator protein-1","protein_coding" "Glyma.14G026900","No alias","Glycine max","Function unknown","protein_coding" "Glyma.14G028200","No alias","Glycine max","DNA primases;DNA primases","protein_coding" "Glyma.14G044500","No alias","Glycine max","ubiquitin-specific protease 12","protein_coding" "Glyma.14G094400","No alias","Glycine max","Protein kinase superfamily protein","protein_coding" "Glyma.14G098500","No alias","Glycine max","Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein","protein_coding" "Glyma.14G157400","No alias","Glycine max","gibberellin 20-oxidase 3","protein_coding" "Glyma.14G160100","No alias","Glycine max","Nodulin MtN3 family protein","protein_coding" "Glyma.15G016700","No alias","Glycine max","golgin candidate 5","protein_coding" "Glyma.15G133700","No alias","Glycine max","Glycosyl hydrolases family 31 protein","protein_coding" "Glyma.15G160950","No alias","Glycine max","Ankyrin repeat family protein","protein_coding" "Glyma.15G163700","No alias","Glycine max","villin 4","protein_coding" "Glyma.15G183400","No alias","Glycine max","DnaJ / Sec63 Brl domains-containing protein","protein_coding" "Glyma.16G009100","No alias","Glycine max","Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3","protein_coding" "Glyma.16G062200","No alias","Glycine max","global transcription factor group E8","protein_coding" "Glyma.16G070800","No alias","Glycine max","Function unknown","protein_coding" "Glyma.17G140200","No alias","Glycine max","Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein","protein_coding" "Glyma.17G169800","No alias","Glycine max","DREB and EAR motif protein 3","protein_coding" "Glyma.17G170500","No alias","Glycine max","Function unknown","protein_coding" "Glyma.17G173000","No alias","Glycine max","mitogen-activated protein kinase kinase kinase 21","protein_coding" "Glyma.17G197001","No alias","Glycine max","Disease resistance protein (TIR-NBS-LRR class) family","protein_coding" "Glyma.18G002400","No alias","Glycine max","DNA repair-recombination protein (RAD50)","protein_coding" "Glyma.18G016900","No alias","Glycine max","Function unknown","protein_coding" "Glyma.18G038600","No alias","Glycine max","pfkB-like carbohydrate kinase family protein","protein_coding" "Glyma.18G143900","No alias","Glycine max","cyclin-related","protein_coding" "Glyma.18G171700","No alias","Glycine max","Protein kinase superfamily protein","protein_coding" "Glyma.18G212700","No alias","Glycine max","SOS3-interacting protein 4","protein_coding" "Glyma.18G215800","No alias","Glycine max","Malectin/receptor-like protein kinase family protein","protein_coding" "Glyma.18G288300","No alias","Glycine max","Function unknown","protein_coding" "Glyma.18G291700","No alias","Glycine max","Heavy metal transport/detoxification superfamily protein","protein_coding" "Glyma.18G299500","No alias","Glycine max","ENTH/VHS family protein","protein_coding" "Glyma.19G008200","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding" "Glyma.19G012300","No alias","Glycine max","BAH domain ;TFIIS helical bundle-like domain","protein_coding" "Glyma.19G217100","No alias","Glycine max","nuclear encoded CLP protease 5","protein_coding" "Glyma.19G228700","No alias","Glycine max","Adenine nucleotide alpha hydrolases-like superfamily protein","protein_coding" "Glyma.19G243500","No alias","Glycine max","Duplicated homeodomain-like superfamily protein","protein_coding" "Glyma.19G261200","No alias","Glycine max","dicer-like 1","protein_coding" "Glyma.20G023500","No alias","Glycine max","Cyclin family protein","protein_coding" "Glyma.20G116700","No alias","Glycine max","Function unknown","protein_coding" "Glyma.20G178500","No alias","Glycine max","Duplicated homeodomain-like superfamily protein","protein_coding" "Glyma.20G212700","No alias","Glycine max","Protein of unknown function (DUF1442)","protein_coding" "Glyma.20G227900","No alias","Glycine max","zeta-carotene desaturase","protein_coding" "Glyma.20G229700","No alias","Glycine max","Function unknown","protein_coding" "GRMZM2G007288","No alias","Zea mays","RING/U-box superfamily protein","protein_coding" "GRMZM2G009655","No alias","Zea mays","ubiquitin-specific protease 10","protein_coding" "GRMZM2G010342","No alias","Zea mays","chromatin remodeling 5","protein_coding" "GRMZM2G012041","No alias","Zea mays","Zinc finger C-x8-C-x5-C-x3-H type family protein","protein_coding" "GRMZM2G023335","No alias","Zea mays","shoot gravitropism 2 (SGR2)","protein_coding" "GRMZM2G024612","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G032252","No alias","Zea mays","high mobility group","protein_coding" "GRMZM2G034276","No alias","Zea mays","WAPL (Wings apart-like protein regulation of heterochromatin) protein","protein_coding" "GRMZM2G047949","No alias","Zea mays","RNA helicase, ATP-dependent, SK12/DOB1 protein","protein_coding" "GRMZM2G048411","No alias","Zea mays","methyl-CPG-binding domain 8","protein_coding" "GRMZM2G051502","No alias","Zea mays","LRR and NB-ARC domains-containing disease resistance protein","protein_coding" "GRMZM2G058970","No alias","Zea mays","zinc knuckle (CCHC-type) family protein","protein_coding" "GRMZM2G063942","No alias","Zea mays","double-stranded DNA binding","protein_coding" "GRMZM2G070305","No alias","Zea mays","peroxisome 1","protein_coding" "GRMZM2G080231","No alias","Zea mays","Galactosyltransferase family protein","protein_coding" "GRMZM2G092451","No alias","Zea mays","DNA topoisomerase 1 beta","protein_coding" "GRMZM2G106308","No alias","Zea mays","binding","protein_coding" "GRMZM2G116592","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G124616","No alias","Zea mays","DEGP protease 2","protein_coding" "GRMZM2G128176","No alias","Zea mays","DNA binding;zinc ion binding;DNA binding","protein_coding" "GRMZM2G134694","No alias","Zea mays","BRCA2-like B","protein_coding" "GRMZM2G135746","No alias","Zea mays","ureide permease 5","protein_coding" "GRMZM2G144971","No alias","Zea mays","CW-type Zinc Finger","protein_coding" "GRMZM2G145088","No alias","Zea mays","Calcium-binding EF hand family protein","protein_coding" "GRMZM2G147811","No alias","Zea mays","Protein kinase superfamily protein","protein_coding" "GRMZM2G153150","No alias","Zea mays","retinoblastoma-related 1","protein_coding" "GRMZM2G177447","No alias","Zea mays","Heat shock protein DnaJ with tetratricopeptide repeat","protein_coding" "GRMZM2G316191","No alias","Zea mays","chromatin remodeling 4","protein_coding" "GRMZM2G316740","No alias","Zea mays","Helicase/SANT-associated, DNA binding protein","protein_coding" "GRMZM2G343917","No alias","Zea mays","HAC13 protein (HAC13)","protein_coding" "GRMZM2G347583","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G356423","No alias","Zea mays","HEAT repeat-containing protein","protein_coding" "GRMZM2G383210","No alias","Zea mays","Transcription factor jumonji (jmjC) domain-containing protein","protein_coding" "GRMZM2G388253","No alias","Zea mays","ENHANCED DOWNY MILDEW 2","protein_coding" "GRMZM2G408216","No alias","Zea mays","DEGP protease 2","protein_coding" "GRMZM2G418604","No alias","Zea mays","binding;RNA binding","protein_coding" "GRMZM2G433117","No alias","Zea mays","dentin sialophosphoprotein-related","protein_coding" "GRMZM2G435541","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding" "GRMZM2G439339","No alias","Zea mays","nuclear pore anchor","protein_coding" "GRMZM2G448241","No alias","Zea mays","Putative integral membrane protein conserved region (DUF2404)","protein_coding" "GRMZM2G451357","No alias","Zea mays","ubiquitin-specific protease 5","protein_coding" "GRMZM2G461356","No alias","Zea mays","THO2","protein_coding" "GRMZM2G467799","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding" "GRMZM2G467907","No alias","Zea mays","RNA-binding protein 47C","protein_coding" "GRMZM2G480002","No alias","Zea mays","GYF domain-containing protein","protein_coding" "GRMZM2G531738","No alias","Zea mays","Homeodomain-like protein","protein_coding" "GRMZM5G820617","No alias","Zea mays","Function unknown","protein_coding" "GRMZM5G856349","No alias","Zea mays","Function unknown","protein_coding" "GRMZM5G881296","No alias","Zea mays","Transducin/WD40 repeat-like superfamily protein","protein_coding" "GRMZM5G895175","No alias","Zea mays","splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein","protein_coding" "HORVU0Hr1G012620.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU0Hr1G031960.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU0Hr1G039250.32","No alias","Hordeum vulgare","cohesin cofactor *(PDS5)","protein_coding" "HORVU1Hr1G013600.3","No alias","Hordeum vulgare","E3 SUMO ubiquitin ligase *(SIZ1)","protein_coding" "HORVU1Hr1G025370.3","No alias","Hordeum vulgare","phospholipase-D *(PLD-alpha) & EC_3.1 hydrolase acting on ester bond","protein_coding" "HORVU1Hr1G053020.4","No alias","Hordeum vulgare","EARP-specific component *(Syndetin-like) of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes","protein_coding" "HORVU1Hr1G060770.10","No alias","Hordeum vulgare","regulatory protein *(SPL7) of copper homeostasis","protein_coding" "HORVU1Hr1G094870.2","No alias","Hordeum vulgare","chromatin remodeling factor *(Mot1) & TATA box-binding protein-associated factor *(MOT1)","protein_coding" "HORVU2Hr1G006180.27","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU2Hr1G010980.1","No alias","Hordeum vulgare","mRNA capping enzyme & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU2Hr1G039960.5","No alias","Hordeum vulgare","EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU2Hr1G110440.3","No alias","Hordeum vulgare","DNA topoisomerase *(TOP1)","protein_coding" "HORVU2Hr1G110750.1","No alias","Hordeum vulgare","DNA topoisomerase *(TOP1)","protein_coding" "HORVU2Hr1G114580.6","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU3Hr1G032170.1","No alias","Hordeum vulgare","NLP-type transcription factor & nitrate response transcription factor *(NLP6/7) & transcription factor *(NIN)","protein_coding" "HORVU3Hr1G042330.2","No alias","Hordeum vulgare","microtubule destabilizing motor protein *(Kinesin-13) & Kinesin-13-type motor protein","protein_coding" "HORVU3Hr1G044880.3","No alias","Hordeum vulgare","regulatory component *(PP4R3) of PP4 phosphatase complex & regulatory component *(PP4R3) of PP4 phosphatase complex","protein_coding" "HORVU3Hr1G059080.11","No alias","Hordeum vulgare","class-III histone methyltransferase *(Trx) & N-methyltransferase component *(ATX3/4/5) of COMPASS histone trimethylation complex","protein_coding" "HORVU3Hr1G114290.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU4Hr1G017010.5","No alias","Hordeum vulgare","phosphatidylinositol 4-kinase *(PI4K-beta) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU4Hr1G027410.11","No alias","Hordeum vulgare","EC_6.1 ligase forming carbon-oxygen bond & alanine-tRNA ligase","protein_coding" "HORVU4Hr1G031740.3","No alias","Hordeum vulgare","component *(GID5) of GID ubiquitinination complex","protein_coding" "HORVU4Hr1G042610.2","No alias","Hordeum vulgare","ROP-activating protein *(RenGAP)","protein_coding" "HORVU4Hr1G056000.12","No alias","Hordeum vulgare","bifunctional 6-phosphofructo-2-kinase and fructose-2,6-bisphosphatase & EC_3.1 hydrolase acting on ester bond","protein_coding" "HORVU4Hr1G077850.3","No alias","Hordeum vulgare","regulatory protein *(SVP/AGL24) of floral meristem identity control & MADS/AGL-type transcription factor","protein_coding" "HORVU4Hr1G079100.5","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU4Hr1G079250.1","No alias","Hordeum vulgare","C-class RAB GTPase","protein_coding" "HORVU5Hr1G008990.7","No alias","Hordeum vulgare","WAK/WAKL protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU5Hr1G029910.8","No alias","Hordeum vulgare","ATPase component *(FIGL1) of FIGL1-FLIP meiotic crossover regulator complex","protein_coding" "HORVU5Hr1G039740.8","No alias","Hordeum vulgare","component *(PIG-A) of GPI N-acetylglucosamine transferase complex","protein_coding" "HORVU5Hr1G060090.2","No alias","Hordeum vulgare","histone demethylase *(KDM3)","protein_coding" "HORVU5Hr1G087920.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G094350.1","No alias","Hordeum vulgare","EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU5Hr1G120260.3","No alias","Hordeum vulgare","pre-mRNA-processing protein *(LUC7)","protein_coding" "HORVU6Hr1G005010.1","No alias","Hordeum vulgare","histone demethylase *(KDM3)","protein_coding" "HORVU6Hr1G005370.9","No alias","Hordeum vulgare","pre-mRNA-processing protein *(PRP40A/B)","protein_coding" "HORVU6Hr1G067890.26","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU6Hr1G077700.12","No alias","Hordeum vulgare","regulatory protein of poly(A) RNA polymerase activity","protein_coding" "HORVU6Hr1G085890.2","No alias","Hordeum vulgare","regulatory protein *(GCN20) of eIF2-alpha kinase activity","protein_coding" "HORVU6Hr1G092910.1","No alias","Hordeum vulgare","histone demethylase *(KDM1d)","protein_coding" "HORVU6Hr1G094470.10","No alias","Hordeum vulgare","regulatory E3 ubiquitin ligase *(LUNAPARK)","protein_coding" "HORVU7Hr1G012810.30","No alias","Hordeum vulgare","spindle assembly checkpoint protein *(TANMEI)","protein_coding" "HORVU7Hr1G023760.3","No alias","Hordeum vulgare","MAP-kinase protein kinase & MAP-kinase protein kinase *(MPK3/6) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU7Hr1G043410.2","No alias","Hordeum vulgare","DNA repair protein *(XPC)","protein_coding" "HORVU7Hr1G046080.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU7Hr1G047590.4","No alias","Hordeum vulgare","protease *(OTS)","protein_coding" "HORVU7Hr1G071710.1","No alias","Hordeum vulgare","DNA topoisomerase *(TOP1)","protein_coding" "Kfl00001_0520","kfl00001_0520_v1.1","Klebsormidium nitens","(at5g41790 : 110.0) encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light.; COP1-interactive protein 1 (CIP1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of protein import into nucleus; LOCATED IN: cytoskeleton, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G64330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q9m7j4|mfp1_tobac : 89.0) MAR-binding filament-like protein 1-1 - Nicotiana tabacum (Common tobacco) & (reliability: 220.0) & (original description: no original description)","protein_coding" "Kfl00003_0080","kfl00003_0080_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00004_g60","kfl00004_g60_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00015_0250","kfl00015_0250_v1.1","Klebsormidium nitens","(at5g16260 : 327.0) Encodes a RNA binding protein ELF9 (EARLY FLOWERING9). Loss of ELF9 function in the Wassilewskija ecotype causes early flowering in short days. ELF9 reduces SOC1 (SUPPRESSOR OF OVEREXPRESSION OF CO1) transcript levels, possibly via nonsense-mediated mRNA decay.; EARLY FLOWERING 9 (ELF9); FUNCTIONS IN: mRNA binding, RNA binding; INVOLVED IN: negative regulation of flower development, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), GYF (InterPro:IPR003169); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 654.0) & (original description: no original description)","protein_coding" "Kfl00018_0560","kfl00018_0560_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00024_0040","kfl00024_0040_v1.1","Klebsormidium nitens","(at3g17740 : 501.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17712.1); Has 409 Blast hits to 335 proteins in 133 species: Archae - 1; Bacteria - 0; Metazoa - 140; Fungi - 188; Plants - 42; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). & (reliability: 1002.0) & (original description: no original description)","protein_coding" "Kfl00025_0040","kfl00025_0040_v1.1","Klebsormidium nitens","(at3g01910 : 468.0) Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor. It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum. SO protein has been found in all parts of the plant. The plant SO combines its enzymatic sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite.; sulfite oxidase (SOX); FUNCTIONS IN: sulfite oxidase activity; INVOLVED IN: sulfur metabolic process, response to sulfur dioxide, chlorophyll metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), Eukaryotic molybdopterin oxidoreductase (InterPro:IPR008335), Moybdenum cofactor oxidoreductase, dimerisation (InterPro:IPR005066), Oxidoreductase, molybdopterin-binding domain (InterPro:IPR000572); BEST Arabidopsis thaliana protein match is: nitrate reductase 1 (TAIR:AT1G77760.1); Has 3266 Blast hits to 3265 proteins in 737 species: Archae - 124; Bacteria - 1570; Metazoa - 141; Fungi - 268; Plants - 245; Viruses - 0; Other Eukaryotes - 918 (source: NCBI BLink). & (p39866|nia2_phavu : 238.0) Nitrate reductase [NADH] 2 (EC 1.7.1.1) (NR-2) - Phaseolus vulgaris (Kidney bean) (French bean) & (reliability: 936.0) & (original description: no original description)","protein_coding" "Kfl00026_0110","kfl00026_0110_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00027_0100","kfl00027_0100_v1.1","Klebsormidium nitens","(at5g41790 : 86.3) encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light.; COP1-interactive protein 1 (CIP1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of protein import into nucleus; LOCATED IN: cytoskeleton, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G64330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 172.6) & (original description: no original description)","protein_coding" "Kfl00031_0300","kfl00031_0300_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00032_0470","kfl00032_0470_v1.1","Klebsormidium nitens","(at2g32240 : 102.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description)","protein_coding" "Kfl00035_0130","kfl00035_0130_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00037_0230","kfl00037_0230_v1.1","Klebsormidium nitens","(at2g33730 : 806.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G28180.1); Has 125674 Blast hits to 72393 proteins in 3317 species: Archae - 1039; Bacteria - 55089; Metazoa - 31149; Fungi - 11223; Plants - 5926; Viruses - 327; Other Eukaryotes - 20921 (source: NCBI BLink). & (p46942|db10_nicsy : 283.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 1612.0) & (original description: no original description)","protein_coding" "Kfl00039_g24","kfl00039_g24_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00054_g15","kfl00054_g15_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00059_0360","kfl00059_0360_v1.1","Klebsormidium nitens","(at1g32130 : 244.0) The C-terminal portion of this protein has high homology to the C-termini of the IWS1 (Interacts With Spt6) proteins found in yeast and humans. Interacts with transcription factor BES1. Involved in brassinosteroid-regulated gene expression.; IWS1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: brassinosteroid mediated signaling pathway, regulation of RNA elongation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT4G19000.1). & (reliability: 488.0) & (original description: no original description)","protein_coding" "Kfl00061_0370","kfl00061_0370_v1.1","Klebsormidium nitens","(at5g55310 : 669.0) Encodes one of two Arabidopsis type-I DNA topoisomerase I genes. Reducing the level of expression of this gene in a top1alpha (At5g55300) mutant background causes seedling lethality.; DNA topoisomerase 1 beta (TOP1BETA); FUNCTIONS IN: DNA topoisomerase type I activity; INVOLVED IN: DNA topological change; LOCATED IN: membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, DNA binding, mixed alpha/beta motif, eukaryotic-type (InterPro:IPR013030), DNA topoisomerase I, DNA binding, eukaryotic-type (InterPro:IPR008336), DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010); BEST Arabidopsis thaliana protein match is: DNA topoisomerase I alpha (TAIR:AT5G55300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p93119|top1_dauca : 548.0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) - Daucus carota (Carrot) & (reliability: 1338.0) & (original description: no original description)","protein_coding" "Kfl00065_0030","kfl00065_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00065_0130","kfl00065_0130_v1.1","Klebsormidium nitens","(at3g49601 : 108.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description)","protein_coding" "Kfl00067_0030","kfl00067_0030_v1.1","Klebsormidium nitens","(at5g42400 : 213.0) Encodes ATXR7 (ARABIDOPSIS TRITHORAX-RELATED7), required for histone H3-K4 methylation and for transcriptional activation of Flowering Locus C.; SET domain protein 25 (SDG25); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1); Has 5838 Blast hits to 5683 proteins in 501 species: Archae - 3; Bacteria - 461; Metazoa - 2434; Fungi - 507; Plants - 1016; Viruses - 2; Other Eukaryotes - 1415 (source: NCBI BLink). & (q8s4p6|ez1_maize : 89.7) Polycomb protein EZ1 (Enhancer of zeste protein 1) - Zea mays (Maize) & (reliability: 426.0) & (original description: no original description)","protein_coding" "Kfl00081_0240","kfl00081_0240_v1.1","Klebsormidium nitens","(at5g24350 : 230.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244). & (reliability: 460.0) & (original description: no original description)","protein_coding" "Kfl00086_0160","kfl00086_0160_v1.1","Klebsormidium nitens","(at1g60900 : 89.7) U2 snRNP auxilliary factor, large subunit, splicing factor; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 snRNP auxilliary factor, large subunit, splicing factor (InterPro:IPR006529); BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor, large subunit, splicing factor (TAIR:AT4G36690.4); Has 95343 Blast hits to 42389 proteins in 1915 species: Archae - 82; Bacteria - 12197; Metazoa - 47091; Fungi - 9469; Plants - 8106; Viruses - 663; Other Eukaryotes - 17735 (source: NCBI BLink). & (reliability: 179.4) & (original description: no original description)","protein_coding" "Kfl00094_0030","kfl00094_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00126_0180","kfl00126_0180_v1.1","Klebsormidium nitens","(at5g61150 : 184.0) Encodes highly hydrophilic protein involved in positively regulating FLC expression. Mutants are early flowering and show a loss of FLC expression in the absence of cold.; VERNALIZATION INDEPENDENCE 4 (VIP4); INVOLVED IN: negative regulation of flower development, vernalization response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leo1-like protein (InterPro:IPR007149); Has 69096 Blast hits to 31991 proteins in 1682 species: Archae - 184; Bacteria - 8816; Metazoa - 27909; Fungi - 8257; Plants - 3470; Viruses - 882; Other Eukaryotes - 19578 (source: NCBI BLink). & (reliability: 368.0) & (original description: no original description)","protein_coding" "Kfl00132_0050","kfl00132_0050_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00181_0170","kfl00181_0170_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00193_0080","kfl00193_0080_v1.1","Klebsormidium nitens","(at1g67230 : 101.0) Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure.; LITTLE NUCLEI1 (LINC1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nucleus organization; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nuclear matrix constituent protein-related (TAIR:AT1G13220.2); Has 314297 Blast hits to 138342 proteins in 3965 species: Archae - 3454; Bacteria - 70538; Metazoa - 123746; Fungi - 25476; Plants - 17143; Viruses - 1173; Other Eukaryotes - 72767 (source: NCBI BLink). & (reliability: 202.0) & (original description: no original description)","protein_coding" "Kfl00210_0150","kfl00210_0150_v1.1","Klebsormidium nitens","(q96453|1433d_soybn : 317.0) 14-3-3-like protein D (SGF14D) - Glycine max (Soybean) & (at1g26480 : 298.0) 14-3-3 protein GF14iota (grf12); general regulatory factor 12 (GRF12); FUNCTIONS IN: protein phosphorylated amino acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 9 (TAIR:AT2G42590.3); Has 2719 Blast hits to 2708 proteins in 388 species: Archae - 0; Bacteria - 8; Metazoa - 1259; Fungi - 334; Plants - 765; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink). & (reliability: 596.0) & (original description: no original description)","protein_coding" "Kfl00211_0200","kfl00211_0200_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00250_0040","kfl00250_0040_v1.1","Klebsormidium nitens","(at4g15570 : 192.0) Similar to yeast Sen1 (splicing endonuclease 1)helicase protein. Involved in female gametophyte development.; MAGATAMA 3 (MAA3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen-pistil interaction, pollen tube guidance, embryo sac development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G16800.1); Has 6636 Blast hits to 6003 proteins in 1303 species: Archae - 237; Bacteria - 1922; Metazoa - 1300; Fungi - 1113; Plants - 639; Viruses - 442; Other Eukaryotes - 983 (source: NCBI BLink). & (reliability: 384.0) & (original description: no original description)","protein_coding" "Kfl00284_0020","kfl00284_0020_v1.1","Klebsormidium nitens","(at3g21480 : 127.0) BRCT domain-containing DNA repair protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: BRCT domain-containing DNA repair protein (TAIR:AT4G03130.1); Has 730 Blast hits to 680 proteins in 204 species: Archae - 4; Bacteria - 146; Metazoa - 309; Fungi - 49; Plants - 100; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). & (reliability: 254.0) & (original description: no original description)","protein_coding" "Kfl00313_0080","kfl00313_0080_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00359_0140","kfl00359_0140_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00363_0110","kfl00363_0110_v1.1","Klebsormidium nitens","(at1g33520 : 177.0) Has single homolog in Arabidopsis, also homologs in human, mouse and C. elegans; contains one G-patch domain (known to mediate RNA-protein interactions) and two KOW domains (may bind RNA and/or protein); localized to the nucleus; mutant suppresses high SA levels and constitutive disease resistance in snc1 npr1 background; required for basal resistance against Pseudomonas syringae maculicola ES4326 and R gene-mediated resistance specified by RPM1, PPS4 and RPP4;; modifier of snc1, 2 (MOS2); CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: D111/G-patch domain-containing protein (TAIR:AT4G25020.1); Has 453 Blast hits to 441 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 80; Plants - 100; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). & (reliability: 354.0) & (original description: no original description)","protein_coding" "Kfl00395_0140","kfl00395_0140_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00398_0120","kfl00398_0120_v1.1","Klebsormidium nitens","(at3g52210 : 179.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mRNA capping; LOCATED IN: cellular_component unknown; EXPRESSED IN: synergid; CONTAINS InterPro DOMAIN/s: mRNA capping enzyme, large subunit (InterPro:IPR004971); BEST Arabidopsis thaliana protein match is: mRNA capping enzyme family protein (TAIR:AT3G20650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q6k833|mces2_orysa : 164.0) mRNA cap guanine-N7 methyltransferase 2 (EC 2.1.1.56) (mRNA (guanine-N(7)-)-methyltransferase 2) (mRNA cap methyltransferase 2) - Oryza sativa (Rice) & (reliability: 358.0) & (original description: no original description)","protein_coding" "Kfl00401_0010","kfl00401_0010_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00420_0070","kfl00420_0070_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00432_0070","kfl00432_0070_v1.1","Klebsormidium nitens","(at1g16800 : 598.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G30100.1); Has 9771 Blast hits to 8579 proteins in 1344 species: Archae - 197; Bacteria - 2032; Metazoa - 2727; Fungi - 1277; Plants - 815; Viruses - 364; Other Eukaryotes - 2359 (source: NCBI BLink). & (reliability: 1196.0) & (original description: no original description)","protein_coding" "Kfl00497_0080","kfl00497_0080_v1.1","Klebsormidium nitens","(at4g33260 : 434.0) putative cdc20 protein (CDC20.2); CDC20.2; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT4G33270.1). & (reliability: 868.0) & (original description: no original description)","protein_coding" "Kfl00577_0080","kfl00577_0080_v1.1","Klebsormidium nitens","(at5g42870 : 456.0) phosphatidic acid phosphohydrolase 2 (PAH2); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: cellular response to phosphate starvation, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LNS2, Lipin/Ned1/Smp2 (InterPro:IPR013209), Lipin, N-terminal conserved region (InterPro:IPR007651); BEST Arabidopsis thaliana protein match is: Lipin family protein (TAIR:AT3G09560.3). & (reliability: 912.0) & (original description: no original description)","protein_coding" "Kfl00610_0035","kfl00610_0035_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00621_0040","kfl00621_0040_v1.1","Klebsormidium nitens","(at1g25540 : 97.8) Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions. Also shown to be a Mediator subunit regulating jasmonate-dependent defense.; PHYTOCHROME AND FLOWERING TIME 1 (PFT1); FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: in 8 processes; LOCATED IN: mediator complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med25, von Willebrand factor type A (InterPro:IPR021419); Has 143907 Blast hits to 47238 proteins in 2114 species: Archae - 36; Bacteria - 15136; Metazoa - 49480; Fungi - 14034; Plants - 10447; Viruses - 822; Other Eukaryotes - 53952 (source: NCBI BLink). & (reliability: 195.6) & (original description: no original description)","protein_coding" "Kfl00685_0060","kfl00685_0060_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00692_0060","kfl00692_0060_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00705_0025","kfl00705_0025_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00758_0010","kfl00758_0010_v1.1","Klebsormidium nitens","(at5g41020 : 172.0) myb family transcription factor; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 344.0) & (original description: no original description)","protein_coding" "Kfl00799_0050","kfl00799_0050_v1.1","Klebsormidium nitens","(at5g49930 : 730.0) embryo defective 1441 (emb1441); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fibronectin-binding A, N-terminal (InterPro:IPR008616), Protein of unknown function DUF3441 (InterPro:IPR021846), Zinc finger, CCHC-type (InterPro:IPR001878), Protein of unknown function DUF814 (InterPro:IPR008532); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1460.0) & (original description: no original description)","protein_coding" "Kfl00832_0030","kfl00832_0030_v1.1","Klebsormidium nitens","(at5g17900 : 199.0) microfibrillar-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular region; CONTAINS InterPro DOMAIN/s: Micro-fibrillar-associated 1, C-terminal (InterPro:IPR009730); BEST Arabidopsis thaliana protein match is: microfibrillar-associated protein-related (TAIR:AT4G08580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 398.0) & (original description: no original description)","protein_coding" "LOC_Os01g32720","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g44220","No alias","Oryza sativa","glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed","protein_coding" "LOC_Os01g56800","No alias","Oryza sativa","MATH domain containing protein, expressed","protein_coding" "LOC_Os01g57110","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding" "LOC_Os01g63900","No alias","Oryza sativa","WD domain, G-beta repeat domain containing protein, expressed","protein_coding" "LOC_Os01g66140","No alias","Oryza sativa","plus-3 domain containing protein, putative, expressed","protein_coding" "LOC_Os01g73080","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g74580","No alias","Oryza sativa","dnaJ homolog subfamily C member, putative, expressed","protein_coding" "LOC_Os02g02050","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding" "LOC_Os02g06010","No alias","Oryza sativa","integral membrane protein, putative, expressed","protein_coding" "LOC_Os02g07340","No alias","Oryza sativa","HEAT repeat family protein, putative, expressed","protein_coding" "LOC_Os02g13400","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os02g19200","No alias","Oryza sativa","OsFBX46 - F-box domain containing protein, expressed","protein_coding" "LOC_Os02g26984","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os02g38780","No alias","Oryza sativa","protein phosphatase 2C containing protein, expressed","protein_coding" "LOC_Os02g46720","No alias","Oryza sativa","ara54-like RING finger protein, putative, expressed","protein_coding" "LOC_Os02g47410","No alias","Oryza sativa","protein kinase, putative, expressed","protein_coding" "LOC_Os02g51430","No alias","Oryza sativa","SEC6, putative, expressed","protein_coding" "LOC_Os02g55670","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os03g03400","No alias","Oryza sativa","diacylglycerol kinase, putative, expressed","protein_coding" "LOC_Os03g11470","No alias","Oryza sativa","DEAD/DEAH box helicase domain containing protein, expressed","protein_coding" "LOC_Os03g11490","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os03g22160","No alias","Oryza sativa","relA-SpoT like protein RSH1, putative, expressed","protein_coding" "LOC_Os03g27820","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os03g47760","No alias","Oryza sativa","SAB, putative, expressed","protein_coding" "LOC_Os03g48940","No alias","Oryza sativa","chloride channel protein CLC-d, putative, expressed","protein_coding" "LOC_Os03g49520","No alias","Oryza sativa","pinin/SDK/memA protein, putative, expressed","protein_coding" "LOC_Os03g53630","No alias","Oryza sativa","PHD finger family protein, putative, expressed","protein_coding" "LOC_Os03g60610","No alias","Oryza sativa","SEC14 cytosolic factor family protein, putative, expressed","protein_coding" "LOC_Os04g15550","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os04g33480","No alias","Oryza sativa","histone deacetylase, putative, expressed","protein_coding" "LOC_Os04g45240","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os04g46892","No alias","Oryza sativa","WD domain, G-beta repeat domain containing protein, expressed","protein_coding" "LOC_Os05g01310","No alias","Oryza sativa","ankyrin repeat family protein, putative, expressed","protein_coding" "LOC_Os05g03820","No alias","Oryza sativa","glutamate--cysteine ligase, chloroplast precursor, putative, expressed","protein_coding" "LOC_Os05g07300","No alias","Oryza sativa","serine/threonine-protein kinase receptor precursor, putative, expressed","protein_coding" "LOC_Os05g09370","No alias","Oryza sativa","kinase, pfkB family, putative, expressed","protein_coding" "LOC_Os05g48600","No alias","Oryza sativa","glycosyltransferase family 43 protein, putative, expressed","protein_coding" "LOC_Os05g48820","No alias","Oryza sativa","DDT, putative, expressed","protein_coding" "LOC_Os06g08480","No alias","Oryza sativa","CHD3-type chromatin-remodeling factor PICKLE, putative, expressed","protein_coding" "LOC_Os06g19470","No alias","Oryza sativa","WW domain containing protein, expressed","protein_coding" "LOC_Os06g22550","No alias","Oryza sativa","transducin family protein, putative, expressed","protein_coding" "LOC_Os06g29020","No alias","Oryza sativa","retrotransposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os06g44030","No alias","Oryza sativa","WD domain, G-beta repeat domain containing protein, expressed","protein_coding" "LOC_Os06g46890","No alias","Oryza sativa","zinc finger C-x8-C-x5-C-x3-H type family protein, expressed","protein_coding" "LOC_Os06g51524","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os07g06130","No alias","Oryza sativa","ethylene-insensitive protein, putative, expressed","protein_coding" "LOC_Os07g16140","No alias","Oryza sativa","FAD binding protein, putative, expressed","protein_coding" "LOC_Os07g32430","No alias","Oryza sativa","pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16, putative, expressed","protein_coding" "LOC_Os07g43470","No alias","Oryza sativa","GTP-binding protein, putative, expressed","protein_coding" "LOC_Os07g45400","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os08g02350","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os08g04920","No alias","Oryza sativa","OsDegp11 - Putative Deg protease homologue, expressed","protein_coding" "LOC_Os08g05840","No alias","Oryza sativa","DNA topoisomerase 1, putative, expressed","protein_coding" "LOC_Os08g07020","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os08g24760","No alias","Oryza sativa","ATP-dependent RNA helicase, putative, expressed","protein_coding" "LOC_Os10g11110","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os10g17630","No alias","Oryza sativa","B3 DNA binding domain containing protein, expressed","protein_coding" "LOC_Os10g20390","No alias","Oryza sativa","MATE efflux family protein, putative, expressed","protein_coding" "LOC_Os10g21110","No alias","Oryza sativa","glycosyl hydrolase family 10 protein, putative, expressed","protein_coding" "LOC_Os10g21890","No alias","Oryza sativa","glycosyl transferase family 8, putative, expressed","protein_coding" "LOC_Os10g24094","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os10g34380","No alias","Oryza sativa","retrotransposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os10g37480","No alias","Oryza sativa","STE_PAK_Ste20_STLK.6 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed","protein_coding" "LOC_Os10g40780","No alias","Oryza sativa","CCR4-Not complex component, Not1domain containing protein, expressed","protein_coding" "LOC_Os11g06760","No alias","Oryza sativa","protein of unknown function domain containing protein, expressed","protein_coding" "LOC_Os11g06934","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os11g16540","No alias","Oryza sativa","tetratricopeptide repeat domain containing protein, expressed","protein_coding" "LOC_Os11g25080","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os11g31770","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os11g34820","No alias","Oryza sativa","THUMP domain-containing protein, putative, expressed","protein_coding" "LOC_Os11g41140","No alias","Oryza sativa","zinc finger, C3HC4 type domain containing protein, expressed","protein_coding" "LOC_Os12g15314","No alias","Oryza sativa","staphylococcal nuclease homologue, putative, expressed","protein_coding" "LOC_Os12g33180","No alias","Oryza sativa","pnn protein, putative, expressed","protein_coding" "MA_100396g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding" "MA_100454g0010","No alias","Picea abies","(at1g64570 : 119.0) DUO POLLEN 3 (DUO3); CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057); Has 1836 Blast hits to 1575 proteins in 289 species: Archae - 4; Bacteria - 248; Metazoa - 589; Fungi - 287; Plants - 112; Viruses - 46; Other Eukaryotes - 550 (source: NCBI BLink). & (reliability: 238.0) & (original description: no original description)","protein_coding" "MA_10153396g0010","No alias","Picea abies","(at3g60240 : 201.0) protein synthesis initiation factor 4G (EIF4G). A mutation in this gene (cum2-1) results in decreased accumulation of CMV coat protein in upper, uninoculated leaves. Likely affects cell-to-cell movement of the virus, also affects TCV multiplication.; eukaryotic translation initiation factor 4G (EIF4G); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: response to virus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT5G57870.1); Has 9538 Blast hits to 7052 proteins in 555 species: Archae - 16; Bacteria - 1070; Metazoa - 4140; Fungi - 1856; Plants - 683; Viruses - 80; Other Eukaryotes - 1693 (source: NCBI BLink). & (reliability: 402.0) & (original description: no original description)","protein_coding" "MA_101777g0010","No alias","Picea abies","(at5g45190 : 390.0) Encodes a cyclin T partner CYCT1;5. Plays important roles in infection with Cauliflower mosaic virus (CaMV).; Cyclin family protein; FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: in 6 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Transcription regulator cyclin (InterPro:IPR015429), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT4G19600.1); Has 4079 Blast hits to 3698 proteins in 345 species: Archae - 2; Bacteria - 149; Metazoa - 1860; Fungi - 545; Plants - 474; Viruses - 8; Other Eukaryotes - 1041 (source: NCBI BLink). & (p93411|ccnc_orysa : 87.8) G1/S-specific cyclin C-type - Oryza sativa (Rice) & (reliability: 780.0) & (original description: no original description)","protein_coding" "MA_10251635g0010","No alias","Picea abies","(at1g35660 : 975.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 309 Blast hits to 256 proteins in 99 species: Archae - 0; Bacteria - 11; Metazoa - 192; Fungi - 12; Plants - 36; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). & (reliability: 1950.0) & (original description: no original description)","protein_coding" "MA_102992g0010","No alias","Picea abies","(q7g8y3|isw2_orysa : 400.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (at5g18620 : 398.0) chromatin remodeling factor17 (CHR17); FUNCTIONS IN: in 7 functions; INVOLVED IN: ATP-dependent chromatin remodeling, chromatin remodeling; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), SLIDE (InterPro:IPR015195), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin-remodeling protein 11 (TAIR:AT3G06400.2); Has 25193 Blast hits to 20371 proteins in 2196 species: Archae - 142; Bacteria - 5974; Metazoa - 6066; Fungi - 4943; Plants - 1903; Viruses - 481; Other Eukaryotes - 5684 (source: NCBI BLink). & (reliability: 796.0) & (original description: no original description)","protein_coding" "MA_10425939g0010","No alias","Picea abies","(at1g68185 : 109.0) Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: Ubiquitin supergroup (InterPro:IPR019955); Has 482 Blast hits to 482 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 88; Plants - 146; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink). & (reliability: 218.0) & (original description: no original description)","protein_coding" "MA_10426496g0010","No alias","Picea abies","(at5g32470 : 598.0) Haem oxygenase-like, multi-helical; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem oxygenase-like, multi-helical (InterPro:IPR016084), TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C (InterPro:IPR004305); Has 1988 Blast hits to 1985 proteins in 797 species: Archae - 79; Bacteria - 1526; Metazoa - 2; Fungi - 151; Plants - 51; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink). & (reliability: 1196.0) & (original description: no original description)","protein_coding" "MA_10426694g0010","No alias","Picea abies","(at3g51800 : 253.0) putative nuclear DNA-binding protein G2p (AtG2) mRNA,; ATG2; FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Proliferation-associated protein 1 (InterPro:IPR004545), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: methionine aminopeptidase 2A (TAIR:AT2G44180.1). & (reliability: 506.0) & (original description: no original description)","protein_coding" "MA_10426739g0010","No alias","Picea abies","(at1g73450 : 696.0) Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G73460.1); Has 91653 Blast hits to 89873 proteins in 2996 species: Archae - 91; Bacteria - 10272; Metazoa - 34556; Fungi - 12029; Plants - 16764; Viruses - 383; Other Eukaryotes - 17558 (source: NCBI BLink). & (q5vn19|mpk11_orysa : 125.0) Mitogen-activated protein kinase 11 (EC 2.7.11.24) (MAP kinase 11) - Oryza sativa (Rice) & (reliability: 1392.0) & (original description: no original description)","protein_coding" "MA_10426836g0010","No alias","Picea abies","(at2g47620 : 231.0) Homologous to yeast SWI3 and a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3C, the other two members of the SWI3 family.; SWITCH/sucrose nonfermenting 3A (SWI3A); FUNCTIONS IN: DNA binding; INVOLVED IN: chromatin remodeling; LOCATED IN: SWI/SNF complex; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: SWITCH/sucrose nonfermenting 3C (TAIR:AT1G21700.1); Has 887 Blast hits to 703 proteins in 193 species: Archae - 0; Bacteria - 3; Metazoa - 393; Fungi - 212; Plants - 178; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink). & (reliability: 462.0) & (original description: no original description)","protein_coding" "MA_10427450g0010","No alias","Picea abies","(q8h6b1|spt16_maize : 1060.0) FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) (Global transcription factor group C protein 102) - Zea mays (Maize) & (at4g10710 : 986.0) encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SPT16.Along with SSRP1 binds to the promoter of FLC.; global transcription factor C (SPT16); INVOLVED IN: vegetative to reproductive phase transition of meristem; LOCATED IN: nuclear euchromatin, FACT complex, nucleolus, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1747, eukaryote (InterPro:IPR013719), Peptidase M24, structural domain (InterPro:IPR000994), FACT complex subunit Spt16p/Cdc68p (InterPro:IPR013953); BEST Arabidopsis thaliana protein match is: GTC2 (TAIR:AT4G10670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1972.0) & (original description: no original description)","protein_coding" "MA_10427723g0010","No alias","Picea abies","(at5g15610 : 416.0) Proteasome component (PCI) domain protein; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: Proteasome component (PCI) domain protein (TAIR:AT3G02200.2); Has 694 Blast hits to 694 proteins in 209 species: Archae - 0; Bacteria - 0; Metazoa - 312; Fungi - 189; Plants - 98; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). & (reliability: 832.0) & (original description: no original description)","protein_coding" "MA_10428046g0010","No alias","Picea abies","(at2g23740 : 335.0) nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: chromatin modification; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), SET domain (InterPro:IPR001214), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 5 (TAIR:AT2G35160.1). & (q8s4p6|ez1_maize : 82.0) Polycomb protein EZ1 (Enhancer of zeste protein 1) - Zea mays (Maize) & (reliability: 670.0) & (original description: no original description)","protein_coding" "MA_10428543g0010","No alias","Picea abies","(at4g00660 : 699.0) RNAhelicase-like 8 (RH8); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: viral reproduction, virus-host interaction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G45810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p41380|if4a3_nicpl : 275.0) Eukaryotic initiation factor 4A-3 (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A-3) (eIF-4A-3) - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (reliability: 1398.0) & (original description: no original description)","protein_coding" "MA_10428711g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding" "MA_10428769g0010","No alias","Picea abies","(at5g06600 : 1641.0) Encodes a ubiquitin-specific protease.; ubiquitin-specific protease 12 (UBP12); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 13 (TAIR:AT3G11910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 3282.0) & (original description: no original description)","protein_coding" "MA_10428854g0010","No alias","Picea abies","(at3g48195 : 139.0) Phox (PX) domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: intracellular signaling pathway, cell communication; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683); Has 654 Blast hits to 601 proteins in 103 species: Archae - 0; Bacteria - 16; Metazoa - 551; Fungi - 11; Plants - 27; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). & (reliability: 278.0) & (original description: no original description)","protein_coding" "MA_10428855g0010","No alias","Picea abies","(at2g39650 : 229.0) Protein of unknown function (DUF506) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT2G38820.2); Has 395 Blast hits to 393 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 393; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). & (reliability: 458.0) & (original description: no original description)","protein_coding" "MA_10429321g0010","No alias","Picea abies","(at3g17330 : 264.0) evolutionarily conserved C-terminal region 6 (ECT6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 7 (TAIR:AT1G48110.2); Has 957 Blast hits to 947 proteins in 165 species: Archae - 0; Bacteria - 0; Metazoa - 417; Fungi - 122; Plants - 332; Viruses - 0; Other Eukaryotes - 86 (source: NCBI BLink). & (reliability: 528.0) & (original description: no original description)","protein_coding" "MA_10429337g0010","No alias","Picea abies","(at2g32910 : 125.0) DCD (Development and Cell Death) domain protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT5G61910.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description)","protein_coding" "MA_10429345g0010","No alias","Picea abies","(at3g52240 : 103.0) unknown protein; Has 220 Blast hits to 193 proteins in 66 species: Archae - 0; Bacteria - 15; Metazoa - 53; Fungi - 33; Plants - 66; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). & (reliability: 206.0) & (original description: no original description)","protein_coding" "MA_10430492g0030","No alias","Picea abies","(at4g31570 : 592.0) CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24460.1); Has 194354 Blast hits to 66887 proteins in 3244 species: Archae - 3688; Bacteria - 38556; Metazoa - 84828; Fungi - 17265; Plants - 10589; Viruses - 805; Other Eukaryotes - 38623 (source: NCBI BLink). & (reliability: 1184.0) & (original description: no original description)","protein_coding" "MA_10430592g0010","No alias","Picea abies","(at5g64830 : 241.0) programmed cell death 2 C-terminal domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: apoptosis; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Programmed cell death protein 2, C-terminal (InterPro:IPR007320); BEST Arabidopsis thaliana protein match is: zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein (TAIR:AT4G02220.1); Has 591 Blast hits to 590 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 244; Fungi - 141; Plants - 96; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink). & (reliability: 482.0) & (original description: no original description)","protein_coding" "MA_10430687g0010","No alias","Picea abies","(q6z8b7|2abb_orysa : 742.0) Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (PP2A, subunit B, beta isoform) - Oryza sativa (Rice) & (at1g17720 : 732.0) type 2A protein serine/threonine phosphatase 55 kDa B; ATB BETA; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Protein phosphatase 2A, regulatory subunit PR55 (InterPro:IPR000009), Protein phosphatase 2A, regulatory subunit PR55, conserved site (InterPro:IPR018067), WD40 repeat, conserved site (InterPro:IPR019775), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (TAIR:AT1G51690.3); Has 1042 Blast hits to 998 proteins in 278 species: Archae - 0; Bacteria - 71; Metazoa - 509; Fungi - 214; Plants - 122; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink). & (reliability: 1464.0) & (original description: no original description)","protein_coding" "MA_10431179g0010","No alias","Picea abies","(at5g32440 : 158.0) Ubiquitin system component Cue protein; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin system component Cue (InterPro:IPR003892); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80040.1). & (reliability: 316.0) & (original description: no original description)","protein_coding" "MA_10431488g0010","No alias","Picea abies","(at5g57990 : 470.0) Encodes a ubiquitin-specific protease.; ubiquitin-specific protease 23 (UBP23); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 19 (TAIR:AT2G24640.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 940.0) & (original description: no original description)","protein_coding" "MA_10431834g0010","No alias","Picea abies","(p55876|if5_maize : 289.0) Eukaryotic translation initiation factor 5 (eIF-5) - Zea mays (Maize) & (at1g36730 : 274.0) Translation initiation factor IF2/IF5; FUNCTIONS IN: binding, translation initiation factor activity; INVOLVED IN: translational initiation, regulation of translational initiation; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF2/IF5, N-terminal (InterPro:IPR016189), Translation initiation factor IF2/IF5, zinc-binding (InterPro:IPR016190), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Translation initiation factor IF2/IF5 (InterPro:IPR002735), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Translation initiation factor IF2/IF5 (TAIR:AT1G77840.1); Has 6371 Blast hits to 4946 proteins in 714 species: Archae - 245; Bacteria - 804; Metazoa - 2020; Fungi - 758; Plants - 416; Viruses - 40; Other Eukaryotes - 2088 (source: NCBI BLink). & (reliability: 548.0) & (original description: no original description)","protein_coding" "MA_10432248g0010","No alias","Picea abies","(at1g28060 : 581.0) Pre-mRNA-splicing factor 3; CONTAINS InterPro DOMAIN/s: Pre-mRNA-splicing factor 3 (InterPro:IPR013881); BEST Arabidopsis thaliana protein match is: Pre-mRNA-splicing factor 3 (TAIR:AT3G55930.1); Has 22923 Blast hits to 12760 proteins in 707 species: Archae - 18; Bacteria - 1085; Metazoa - 11525; Fungi - 3053; Plants - 1999; Viruses - 93; Other Eukaryotes - 5150 (source: NCBI BLink). & (reliability: 1162.0) & (original description: no original description)","protein_coding" "MA_10432868g0030","No alias","Picea abies","(at3g15200 : 280.0) Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: cytosolic ribosome; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G15010.1); Has 26696 Blast hits to 9471 proteins in 249 species: Archae - 1; Bacteria - 11; Metazoa - 102; Fungi - 194; Plants - 25787; Viruses - 0; Other Eukaryotes - 601 (source: NCBI BLink). & (q76c99|rf1_orysa : 117.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 560.0) & (original description: no original description)","protein_coding" "MA_10433105g0010","No alias","Picea abies","(at5g64420 : 654.0) DNA polymerase V family; FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding; INVOLVED IN: DNA replication, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase V (InterPro:IPR007015); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1308.0) & (original description: no original description)","protein_coding" "MA_10433417g0010","No alias","Picea abies","(at1g03080 : 334.0) kinase interacting (KIP1-like) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053), KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: Kinase interacting (KIP1-like) family protein (TAIR:AT3G22790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 668.0) & (original description: no original description)","protein_coding" "MA_10433735g0010","No alias","Picea abies","(at4g30600 : 285.0) signal recognition particle receptor alpha subunit family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, signal recognition particle binding, GTP binding, GTPase activity, nucleotide binding; INVOLVED IN: intracellular protein transport, protein targeting, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: endoplasmic reticulum, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle receptor, alpha subunit, N-terminal (InterPro:IPR007222), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: signal recognition particle 54 kDa subunit (TAIR:AT1G15310.1); Has 16825 Blast hits to 16740 proteins in 2884 species: Archae - 472; Bacteria - 10592; Metazoa - 551; Fungi - 433; Plants - 279; Viruses - 3; Other Eukaryotes - 4495 (source: NCBI BLink). & (reliability: 570.0) & (original description: no original description)","protein_coding" "MA_10435083g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding" "MA_10435207g0010","No alias","Picea abies","(at4g31570 : 108.0) CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24460.1); Has 194354 Blast hits to 66887 proteins in 3244 species: Archae - 3688; Bacteria - 38556; Metazoa - 84828; Fungi - 17265; Plants - 10589; Viruses - 805; Other Eukaryotes - 38623 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description)","protein_coding" "MA_10435320g0020","No alias","Picea abies","(at1g07990 : 686.0) SIT4 phosphatase-associated family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SIT4 phosphatase-associated protein (InterPro:IPR007587); BEST Arabidopsis thaliana protein match is: SIT4 phosphatase-associated family protein (TAIR:AT2G28360.1); Has 1048 Blast hits to 891 proteins in 200 species: Archae - 0; Bacteria - 31; Metazoa - 354; Fungi - 329; Plants - 109; Viruses - 3; Other Eukaryotes - 222 (source: NCBI BLink). & (reliability: 1372.0) & (original description: no original description)","protein_coding" "MA_10435556g0010","No alias","Picea abies","(q41365|prs7_spiol : 733.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Spinacia oleracea (Spinach) & (at1g53750 : 731.0) 26S proteasome AAA-ATPase subunit RPT1a (RPT1a) mRNA,; regulatory particle triple-A 1A (RPT1A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (TAIR:AT1G53780.2); Has 30646 Blast hits to 28391 proteins in 3108 species: Archae - 1452; Bacteria - 10350; Metazoa - 4866; Fungi - 3564; Plants - 3128; Viruses - 30; Other Eukaryotes - 7256 (source: NCBI BLink). & (reliability: 1462.0) & (original description: no original description)","protein_coding" "MA_10435882g0010","No alias","Picea abies","(at3g09010 : 140.0) Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G16670.1); Has 118495 Blast hits to 117144 proteins in 4669 species: Archae - 109; Bacteria - 13491; Metazoa - 44039; Fungi - 9996; Plants - 33355; Viruses - 385; Other Eukaryotes - 17120 (source: NCBI BLink). & (reliability: 280.0) & (original description: no original description)","protein_coding" "MA_10435928g0010","No alias","Picea abies","(at2g17820 : 196.0) Encodes a member of the histidine kinase family.; histidine kinase 1 (HK1); FUNCTIONS IN: osmosensor activity, protein histidine kinase activity, histidine phosphotransfer kinase activity; INVOLVED IN: response to water deprivation, seed maturation, response to osmotic stress; LOCATED IN: membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), Signal transduction histidine kinase, core (InterPro:IPR005467), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: Signal transduction histidine kinase (TAIR:AT2G47430.1); Has 149976 Blast hits to 132540 proteins in 3044 species: Archae - 792; Bacteria - 133304; Metazoa - 35; Fungi - 2288; Plants - 2106; Viruses - 27; Other Eukaryotes - 11424 (source: NCBI BLink). & (reliability: 392.0) & (original description: no original description)","protein_coding" "MA_10435977g0020","No alias","Picea abies","(at3g01460 : 239.0) Encodes a protein with a methyl-CpG-binding domain. Has sequence similarity to human MBD proteins. Involved in the modification of the FLC chromatin acetylation state to affect FLC expression. Mutants show an early flowering, and enhanced shoot branching phenotypes.; methyl-CPG-binding domain 9 (MBD9); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: photoperiodism, flowering, secondary shoot formation, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), FY-rich, C-terminal (InterPro:IPR003889), Zinc finger, PHD-type (InterPro:IPR001965), FY-rich, N-terminal (InterPro:IPR003888), DNA-binding, integrase-type (InterPro:IPR016177), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD-type zinc finger family protein (TAIR:AT1G77250.1); Has 6416 Blast hits to 3988 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 4085; Fungi - 602; Plants - 1260; Viruses - 0; Other Eukaryotes - 469 (source: NCBI BLink). & (reliability: 478.0) & (original description: no original description)","protein_coding" "MA_10436299g0010","No alias","Picea abies","(at1g69060 : 179.0) Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); Has 3526 Blast hits to 2426 proteins in 300 species: Archae - 4; Bacteria - 245; Metazoa - 1133; Fungi - 271; Plants - 159; Viruses - 2; Other Eukaryotes - 1712 (source: NCBI BLink). & (reliability: 358.0) & (original description: no original description)","protein_coding" "MA_10436538g0010","No alias","Picea abies","(at1g08620 : 878.0) PKDM7D; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), FY-rich, C-terminal (InterPro:IPR003889), FY-rich, N-terminal (InterPro:IPR003888), Transcription factor jumonji, JmjN (InterPro:IPR003349), Zinc finger, C5HC2-type (InterPro:IPR004198), FY-rich, C-terminal subgroup (InterPro:IPR018516), Transcription factor jumonji (InterPro:IPR013129), FY-rich, N-terminal subgroup (InterPro:IPR018518); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (TAIR:AT1G30810.2). & (reliability: 1756.0) & (original description: no original description)","protein_coding" "MA_10437006g0010","No alias","Picea abies","(at3g12590 : 487.0) unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 50 Blast hits to 41 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). & (reliability: 974.0) & (original description: no original description)","protein_coding" "MA_104862g0010","No alias","Picea abies","(at3g52250 : 180.0) Encodes a protein with a putative role in mRNA splicing.; Duplicated homeodomain-like superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: RNA splicing; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SANT, eukarya (InterPro:IPR017884); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 360.0) & (original description: no original description)","protein_coding" "MA_10713g0010","No alias","Picea abies","(at1g26580 : 147.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.1); Has 161 Blast hits to 161 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 280.0) & (original description: no original description)","protein_coding" "MA_108833g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding" "MA_112899g0010","No alias","Picea abies","(at2g35140 : 165.0) DCD (Development and Cell Death) domain protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT5G61910.2); Has 307 Blast hits to 293 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). & (p37707|b2_dauca : 94.7) B2 protein - Daucus carota (Carrot) & (reliability: 330.0) & (original description: no original description)","protein_coding" "MA_115424g0010","No alias","Picea abies","(at5g65200 : 309.0) Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.; plant U-box 38 (PUB38); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein with ARM repeat domain (TAIR:AT5G62560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q64ha9|spl11_orysa : 130.0) Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11) - Oryza sativa (Rice) & (reliability: 618.0) & (original description: no original description)","protein_coding" "MA_115918g0010","No alias","Picea abies","(at3g20720 : 537.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. & (reliability: 1074.0) & (original description: no original description)","protein_coding" "MA_11973g0010","No alias","Picea abies","(at2g33770 : 155.0) Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response.; phosphate 2 (PHO2); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 23 (TAIR:AT2G16920.1); Has 6405 Blast hits to 6302 proteins in 368 species: Archae - 0; Bacteria - 0; Metazoa - 2716; Fungi - 1263; Plants - 1493; Viruses - 17; Other Eukaryotes - 916 (source: NCBI BLink). & (reliability: 310.0) & (original description: no original description)","protein_coding" "MA_120434g0010","No alias","Picea abies","(at5g55300 : 828.0) Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. Functions in stem cell maintenance at all stages of shoot and floral meristems and in the regulation of gene silencing.; DNA topoisomerase I alpha (TOP1ALPHA); FUNCTIONS IN: protein binding, DNA topoisomerase type I activity; INVOLVED IN: in 8 processes; LOCATED IN: chromosome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499); BEST Arabidopsis thaliana protein match is: DNA topoisomerase 1 beta (TAIR:AT5G55310.1). & (p93119|top1_dauca : 723.0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) - Daucus carota (Carrot) & (reliability: 1656.0) & (original description: no original description)","protein_coding" "MA_122233g0010","No alias","Picea abies","(at4g33690 : 108.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: pollen tube; Has 543 Blast hits to 512 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 281; Fungi - 54; Plants - 72; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description)","protein_coding" "MA_130026g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding" "MA_13389g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding" "MA_140627g0010","No alias","Picea abies","(at4g20300 : 122.0) Protein of unknown function (DUF1639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT1G55340.1); Has 598 Blast hits to 583 proteins in 86 species: Archae - 0; Bacteria - 10; Metazoa - 190; Fungi - 42; Plants - 277; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink). & (reliability: 244.0) & (original description: no original description)","protein_coding" "MA_141902g0010","No alias","Picea abies","(at1g73390 : 146.0) Endosomal targeting BRO1-like domain-containing protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328); BEST Arabidopsis thaliana protein match is: Endosomal targeting BRO1-like domain-containing protein (TAIR:AT1G17940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 292.0) & (original description: no original description)","protein_coding" "MA_141991g0010","No alias","Picea abies","(at4g25610 : 199.0) C2H2-like zinc finger protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); Has 400 Blast hits to 392 proteins in 117 species: Archae - 0; Bacteria - 39; Metazoa - 136; Fungi - 49; Plants - 38; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink). & (reliability: 398.0) & (original description: no original description)","protein_coding" "MA_14714g0010","No alias","Picea abies","(at3g04910 : 546.0) Serine/threonine protein kinase, whose transcription is regulated by circadian rhythm.; with no lysine (K) kinase 1 (WNK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, circadian rhythm; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G28080.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q5qn75|m2k1_orysa : 89.7) Mitogen-activated protein kinase kinase 1 (EC 2.7.12.2) (MAP kinase kinase 1) (MAPKK1) (OsMEK1) - Oryza sativa (Rice) & (reliability: 1092.0) & (original description: no original description)","protein_coding" "MA_158067g0010","No alias","Picea abies","(at3g54190 : 662.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G38630.1); Has 138 Blast hits to 136 proteins in 32 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). & (reliability: 1324.0) & (original description: no original description)","protein_coding" "MA_17019g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding" "MA_18241g0010","No alias","Picea abies","(at1g70060 : 799.0) Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190).; SIN3-like 4 (SNL4); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 3 (TAIR:AT1G24190.2); Has 2571 Blast hits to 1108 proteins in 232 species: Archae - 4; Bacteria - 56; Metazoa - 1028; Fungi - 808; Plants - 415; Viruses - 14; Other Eukaryotes - 246 (source: NCBI BLink). & (reliability: 1544.0) & (original description: no original description)","protein_coding" "MA_19116g0010","No alias","Picea abies","(at3g19260 : 358.0) LAG1 homolog . Loss of function mutant is sensitive to AAL-toxin. LOH2 is presumed to function in sphingolipid metabolism.; LAG1 homologue 2 (LOH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to molecule of fungal origin; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longevity assurance, LAG1/LAC1 (InterPro:IPR016439), TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: LAG1 longevity assurance homolog 3 (TAIR:AT1G13580.3); Has 1277 Blast hits to 1277 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 612; Fungi - 306; Plants - 183; Viruses - 3; Other Eukaryotes - 173 (source: NCBI BLink). & (q84qc0|ascl3_orysa : 342.0) ASC1-like protein 3 (Alternaria stem canker resistance-like protein 3) - Oryza sativa (Rice) & (reliability: 716.0) & (original description: no original description)","protein_coding" "MA_19380g0010","No alias","Picea abies","(at3g07050 : 558.0) GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917), GNL3L/Grn1 putative GTPase (InterPro:IPR014813); BEST Arabidopsis thaliana protein match is: GTP-binding family protein (TAIR:AT1G52980.1); Has 11622 Blast hits to 10428 proteins in 1861 species: Archae - 158; Bacteria - 5948; Metazoa - 1715; Fungi - 910; Plants - 502; Viruses - 28; Other Eukaryotes - 2361 (source: NCBI BLink). & (reliability: 1116.0) & (original description: no original description)","protein_coding" "MA_20567g0010","No alias","Picea abies","(at3g47160 : 328.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G58787.1). & (reliability: 656.0) & (original description: no original description)","protein_coding" "MA_20596g0020","No alias","Picea abies","(at2g05170 : 1043.0) Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis.; vacuolar protein sorting 11 (VPS11); FUNCTIONS IN: transporter activity, binding, zinc ion binding; INVOLVED IN: vacuole organization; LOCATED IN: plant-type vacuole membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 11 (InterPro:IPR016528), Zinc finger, RING-type (InterPro:IPR001841), Armadillo-type fold (InterPro:IPR016024); Has 716 Blast hits to 615 proteins in 203 species: Archae - 0; Bacteria - 2; Metazoa - 251; Fungi - 269; Plants - 42; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink). & (reliability: 2086.0) & (original description: no original description)","protein_coding" "MA_24887g0010","No alias","Picea abies","(at3g62200 : 288.0) Putative endonuclease or glycosyl hydrolase; BEST Arabidopsis thaliana protein match is: putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (TAIR:AT5G61190.1); Has 3997 Blast hits to 3396 proteins in 338 species: Archae - 0; Bacteria - 122; Metazoa - 1660; Fungi - 937; Plants - 691; Viruses - 43; Other Eukaryotes - 544 (source: NCBI BLink). & (reliability: 576.0) & (original description: no original description)","protein_coding" "MA_26994g0010","No alias","Picea abies","(at5g62760 : 384.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages. & (reliability: 768.0) & (original description: no original description)","protein_coding" "MA_34468g0010","No alias","Picea abies","(at3g62310 : 1196.0) RNA helicase family protein; FUNCTIONS IN: RNA helicase activity, helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT2G47250.1); Has 10517 Blast hits to 9531 proteins in 1639 species: Archae - 4; Bacteria - 3473; Metazoa - 2472; Fungi - 1291; Plants - 883; Viruses - 640; Other Eukaryotes - 1754 (source: NCBI BLink). & (reliability: 2392.0) & (original description: no original description)","protein_coding" "MA_34612g0010","No alias","Picea abies","(at5g12400 : 84.0) DNA binding;zinc ion binding;DNA binding; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding motif (InterPro:IPR017956), DDT domain (InterPro:IPR004022), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), DDT domain superfamily (InterPro:IPR018501), DDT domain, subgroup (InterPro:IPR018500), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: PHD finger family protein (TAIR:AT5G22760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 164.8) & (original description: no original description)","protein_coding" "MA_3688g0010","No alias","Picea abies","(at1g69780 : 143.0) Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.; ATHB13; FUNCTIONS IN: sequence-specific DNA binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cotyledon morphogenesis, regulation of transcription, DNA-dependent, response to sucrose stimulus, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 23 (TAIR:AT1G26960.1); Has 11763 Blast hits to 11710 proteins in 595 species: Archae - 0; Bacteria - 0; Metazoa - 9272; Fungi - 193; Plants - 2061; Viruses - 5; Other Eukaryotes - 232 (source: NCBI BLink). & (reliability: 286.0) & (original description: no original description)","protein_coding" "MA_369609g0010","No alias","Picea abies","(at3g18430 : 229.0) Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: calmodulin 9 (TAIR:AT3G51920.1). & (reliability: 458.0) & (original description: no original description)","protein_coding" "MA_37385g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding" "MA_4050g0010","No alias","Picea abies","(q5z8z7|2aba_orysa : 162.0) Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (PP2A, subunit B, alpha isoform) - Oryza sativa (Rice) & (at1g17720 : 161.0) type 2A protein serine/threonine phosphatase 55 kDa B; ATB BETA; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Protein phosphatase 2A, regulatory subunit PR55 (InterPro:IPR000009), Protein phosphatase 2A, regulatory subunit PR55, conserved site (InterPro:IPR018067), WD40 repeat, conserved site (InterPro:IPR019775), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (TAIR:AT1G51690.3); Has 1042 Blast hits to 998 proteins in 278 species: Archae - 0; Bacteria - 71; Metazoa - 509; Fungi - 214; Plants - 122; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink). & (reliability: 322.0) & (original description: no original description)","protein_coding" "MA_43388g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding" "MA_46191g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding" "MA_47345g0010","No alias","Picea abies","(at3g52120 : 367.0) SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SWAP/Surp (InterPro:IPR000061), D111/G-patch (InterPro:IPR000467); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 734.0) & (original description: no original description)","protein_coding" "MA_56018g0010","No alias","Picea abies","(at1g67530 : 518.0) ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G24330.1); Has 3478 Blast hits to 3233 proteins in 245 species: Archae - 0; Bacteria - 16; Metazoa - 777; Fungi - 226; Plants - 2201; Viruses - 3; Other Eukaryotes - 255 (source: NCBI BLink). & (q64ha9|spl11_orysa : 169.0) Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11) - Oryza sativa (Rice) & (reliability: 1036.0) & (original description: no original description)","protein_coding" "MA_62967g0010","No alias","Picea abies","(at3g25690 : 261.0) actin binding protein required for normal chloroplast positioning; CHLOROPLAST UNUSUAL POSITIONING 1 (CHUP1); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G18570.1). & (reliability: 522.0) & (original description: no original description)","protein_coding" "MA_6362g0020","No alias","Picea abies","(at1g22280 : 335.0) Encodes a phytochrome-associated protein, PAPP2C (phytochrome-associated protein phosphatase type 2C). PAPP2C interacts in the nucleus with phyA (phytochrome A) and phyB. Functions as a regulator of phytochrome-interacting factor PIF3 by dephosphorylating phytochromes in the nucleus.; phytochrome-associated protein phosphatase type 2C (PAPP2C); CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G34750.1). & (reliability: 670.0) & (original description: no original description)","protein_coding" "MA_67230g0010","No alias","Picea abies","(at3g17850 : 150.0) Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), AGC-kinase, C-terminal (InterPro:IPR000961), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G48490.3); Has 127463 Blast hits to 124461 proteins in 4737 species: Archae - 199; Bacteria - 14974; Metazoa - 47504; Fungi - 13120; Plants - 28745; Viruses - 516; Other Eukaryotes - 22405 (source: NCBI BLink). & (reliability: 274.0) & (original description: no original description)","protein_coding" "MA_7069g0010","No alias","Picea abies","(at4g00660 : 734.0) RNAhelicase-like 8 (RH8); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: viral reproduction, virus-host interaction; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G45810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p41380|if4a3_nicpl : 277.0) Eukaryotic initiation factor 4A-3 (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A-3) (eIF-4A-3) - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (reliability: 1468.0) & (original description: no original description)","protein_coding" "MA_7140g0010","No alias","Picea abies","(at2g17020 : 434.0) F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT1G55590.1); Has 4669 Blast hits to 2409 proteins in 221 species: Archae - 0; Bacteria - 377; Metazoa - 1922; Fungi - 539; Plants - 1335; Viruses - 3; Other Eukaryotes - 493 (source: NCBI BLink). & (reliability: 868.0) & (original description: no original description)","protein_coding" "MA_83257g0010","No alias","Picea abies","(at5g05140 : 204.0) Transcription elongation factor (TFIIS) family protein; FUNCTIONS IN: transcription regulator activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT3G10820.2); Has 741 Blast hits to 730 proteins in 116 species: Archae - 0; Bacteria - 16; Metazoa - 377; Fungi - 33; Plants - 253; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink). & (reliability: 408.0) & (original description: no original description)","protein_coding" "MA_8393g0010","No alias","Picea abies","(at1g68370 : 450.0) DnaJ-like protein with homology to coiled coils found in cytoskeleton-interacting proteins.; ALTERED RESPONSE TO GRAVITY 1 (ARG1); CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: ARG1-like 1 (TAIR:AT1G24120.1); Has 24672 Blast hits to 24665 proteins in 3308 species: Archae - 176; Bacteria - 9653; Metazoa - 4287; Fungi - 2463; Plants - 2622; Viruses - 27; Other Eukaryotes - 5444 (source: NCBI BLink). & (reliability: 900.0) & (original description: no original description)","protein_coding" "MA_8546g0010","No alias","Picea abies","(at3g05430 : 200.0) Tudor/PWWP/MBT superfamily protein; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT5G27650.1); Has 708 Blast hits to 664 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 463; Fungi - 18; Plants - 206; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). & (reliability: 400.0) & (original description: no original description)","protein_coding" "MA_864811g0010","No alias","Picea abies","(at4g30600 : 316.0) signal recognition particle receptor alpha subunit family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, signal recognition particle binding, GTP binding, GTPase activity, nucleotide binding; INVOLVED IN: intracellular protein transport, protein targeting, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: endoplasmic reticulum, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Signal recognition particle receptor, alpha subunit, N-terminal (InterPro:IPR007222), Signal recognition particle, SRP54 subunit, helical bundle (InterPro:IPR013822), Signal recognition particle, SRP54 subunit, GTPase (InterPro:IPR000897); BEST Arabidopsis thaliana protein match is: signal recognition particle 54 kDa subunit (TAIR:AT1G15310.1); Has 16825 Blast hits to 16740 proteins in 2884 species: Archae - 472; Bacteria - 10592; Metazoa - 551; Fungi - 433; Plants - 279; Viruses - 3; Other Eukaryotes - 4495 (source: NCBI BLink). & (p49970|sr543_horvu : 101.0) Signal recognition particle 54 kDa protein 3 (SRP54) - Hordeum vulgare (Barley) & (reliability: 632.0) & (original description: no original description)","protein_coding" "MA_86598g0010","No alias","Picea abies","(at3g25690 : 452.0) actin binding protein required for normal chloroplast positioning; CHLOROPLAST UNUSUAL POSITIONING 1 (CHUP1); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G18570.1). & (reliability: 904.0) & (original description: no original description)","protein_coding" "MA_87828g0010","No alias","Picea abies","(at4g32820 : 1133.0) Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); Has 168 Blast hits to 155 proteins in 63 species: Archae - 8; Bacteria - 15; Metazoa - 66; Fungi - 5; Plants - 51; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). & (reliability: 2266.0) & (original description: no original description)","protein_coding" "MA_88236g0010","No alias","Picea abies","(q75kk8|mpk14_orysa : 399.0) Mitogen-activated protein kinase 14 (EC 2.7.11.24) (MAP kinase 14) - Oryza sativa (Rice) & (at2g42880 : 371.0) member of MAP Kinase; MAP kinase 20 (MPK20); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), MAP kinase, conserved site (InterPro:IPR003527), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: MAP kinase 19 (TAIR:AT3G14720.1); Has 119531 Blast hits to 118315 proteins in 3667 species: Archae - 102; Bacteria - 13281; Metazoa - 43923; Fungi - 12334; Plants - 29390; Viruses - 579; Other Eukaryotes - 19922 (source: NCBI BLink). & (reliability: 742.0) & (original description: no original description)","protein_coding" "MA_88915g0010","No alias","Picea abies","(at1g65430 : 735.0) ARIADNE 8 (ARI8); FUNCTIONS IN: ubiquitin-protein ligase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1); Has 2973 Blast hits to 2950 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 1311; Fungi - 559; Plants - 644; Viruses - 3; Other Eukaryotes - 456 (source: NCBI BLink). & (reliability: 1470.0) & (original description: no original description)","protein_coding" "MA_89487g0020","No alias","Picea abies","(at5g55300 : 143.0) Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. Functions in stem cell maintenance at all stages of shoot and floral meristems and in the regulation of gene silencing.; DNA topoisomerase I alpha (TOP1ALPHA); FUNCTIONS IN: protein binding, DNA topoisomerase type I activity; INVOLVED IN: in 8 processes; LOCATED IN: chromosome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499); BEST Arabidopsis thaliana protein match is: DNA topoisomerase 1 beta (TAIR:AT5G55310.1). & (p93119|top1_dauca : 140.0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) - Daucus carota (Carrot) & (reliability: 286.0) & (original description: no original description)","protein_coding" "MA_897550g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding" "MA_91092g0010","No alias","Picea abies","(at1g67120 : 686.0) ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, transcription factor binding, nucleotide binding, ATP binding; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of protein complex assembly; LOCATED IN: chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Midasin (InterPro:IPR012099), ATPase, AAA-5 (InterPro:IPR011704), ATPase, AAA+ type, core (InterPro:IPR003593), von Willebrand factor, type A (InterPro:IPR002035), RNA polymerase sigma factor 54, interaction (InterPro:IPR002078); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1372.0) & (original description: no original description)","protein_coding" "MA_930859g0010","No alias","Picea abies","(at3g54826 : 136.0) Zim17-type zinc finger protein; CONTAINS InterPro DOMAIN/s: Zinc finger, Zim17-type (InterPro:IPR007853); Has 403 Blast hits to 403 proteins in 183 species: Archae - 0; Bacteria - 0; Metazoa - 114; Fungi - 127; Plants - 101; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink). & (reliability: 272.0) & (original description: no original description)","protein_coding" "MA_95843g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding" "MA_9965g0010","No alias","Picea abies","(at5g42520 : 119.0) basic pentacysteine 6 (BPC6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 4 (TAIR:AT2G21240.2); Has 233 Blast hits to 232 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0; Plants - 221; Viruses - 3; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 238.0) & (original description: no original description)","protein_coding" "MA_99733g0010","No alias","Picea abies","(at5g11170 : 745.0) DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; INVOLVED IN: response to cadmium ion; LOCATED IN: nucleolus; EXPRESSED IN: guard cell, root, cultured cell; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT5G11200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p41378|if4a_wheat : 240.0) Eukaryotic initiation factor 4A (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A) (eIF-4A) - Triticum aestivum (Wheat) & (reliability: 1490.0) & (original description: no original description)","protein_coding" "Mp1g01940.1","No alias","Marchantia polymorpha","component MED13 of kinase module of MEDIATOR transcription co-activator complex","protein_coding" "Mp1g03380.1","No alias","Marchantia polymorpha","Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana (sp|q39008|m3k1_arath : 89.4) & Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group(50.2.7 : 61.0)","protein_coding" "Mp1g04100.1","No alias","Marchantia polymorpha","Protein terminal ear1 homolog OS=Oryza sativa subsp. japonica (sp|q0jgs5|ear1_orysj : 193.0)","protein_coding" "Mp1g10310.1","No alias","Marchantia polymorpha","transcription factor (MYB). transcription factor (MYB-related). component CDC5/MAC1 of non-snRNP MOS4-associated complex","protein_coding" "Mp1g29270.1","No alias","Marchantia polymorpha","MDC1-like homologous recombination repair factor","protein_coding" "Mp2g02750.1","No alias","Marchantia polymorpha","CKI1 cytokinin signalling pathway activator","protein_coding" "Mp2g04070.1","No alias","Marchantia polymorpha","Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana (sp|q9m907|pp217_arath : 281.0)","protein_coding" "Mp2g04750.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp2g05500.1","No alias","Marchantia polymorpha","Nardilysin-like peptidase","protein_coding" "Mp2g07770.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp2g07950.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp2g10710.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp2g12070.1","No alias","Marchantia polymorpha","mechanosensitive ion channel (Piezo)","protein_coding" "Mp2g13350.1","No alias","Marchantia polymorpha","Calmodulin-interacting protein 111 OS=Arabidopsis thaliana (sp|q9let7|ci111_arath : 572.0)","protein_coding" "Mp3g01990.1","No alias","Marchantia polymorpha","component eIF3e of eIF3 mRNA-to-PIC binding complex","protein_coding" "Mp3g07940.1","No alias","Marchantia polymorpha","pre-mRNA splicing regulator (DDX5)","protein_coding" "Mp3g13140.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp3g13910.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp3g16650.1","No alias","Marchantia polymorpha","protein kinase (CDK9)","protein_coding" "Mp4g09540.1","No alias","Marchantia polymorpha","helicase component eIF4A3 of RNA quality control Exon Junction complex","protein_coding" "Mp4g10640.1","No alias","Marchantia polymorpha","adherin (SCC2)","protein_coding" "Mp4g15240.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp4g20400.1","No alias","Marchantia polymorpha","component SF3A3 of splicing factor 3A complex","protein_coding" "Mp6g05370.1","No alias","Marchantia polymorpha","DNA topoisomerase (TOP1)","protein_coding" "Mp6g09620.1","No alias","Marchantia polymorpha","component PRL1/MAC2 of non-snRNP MOS4-associated complex","protein_coding" "Mp6g10790.1","No alias","Marchantia polymorpha","protein factor PRPF6/PRP1/STA1 of U5 small nuclear ribonucleoprotein particle (snRNP)","protein_coding" "Mp6g17130.1","No alias","Marchantia polymorpha","snRNP-associated protein (SR140)","protein_coding" "Mp7g00190.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp7g06570.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp7g09100.1","No alias","Marchantia polymorpha","chromatin-silencing modulator (BLI)","protein_coding" "Mp7g09630.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp7g11330.1","No alias","Marchantia polymorpha","G2-like GARP transcription factor","protein_coding" "Mp7g12520.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp7g13420.1","No alias","Marchantia polymorpha","modification reader component Pc of PRC1 histone mono-ubiquitination complex","protein_coding" "Mp7g14510.1","No alias","Marchantia polymorpha","Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana (sp|q9fnr1|rbg3_arath : 81.6)","protein_coding" "Mp8g01420.1","No alias","Marchantia polymorpha","Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana (sp|q9sgh2|mbd9_arath : 335.0)","protein_coding" "Mp8g03760.1","No alias","Marchantia polymorpha","component CASC3 of RNA quality control Exon Junction complex","protein_coding" "Mp8g11970.1","No alias","Marchantia polymorpha","Protein TORNADO 1 OS=Arabidopsis thaliana (sp|q9fj57|trn1_arath : 213.0)","protein_coding" "Mp8g14880.1","No alias","Marchantia polymorpha","TRAF1 endomembrane trafficking ATG6-stability regulator protein","protein_coding" "Mp8g18940.1","No alias","Marchantia polymorpha","component Pcf11 of Cleavage Factor II (CF-IIm) complex","protein_coding" "Potri.001G359700","No alias","Populus trichocarpa","DNA topoisomerase 1 beta","protein_coding" "Potri.011G092700","No alias","Populus trichocarpa","DNA topoisomerase 1 beta","protein_coding" "Pp1s107_71V6","No alias","Physcomitrella patens","subfamily member 13","protein_coding" "Pp1s10_1V6","No alias","Physcomitrella patens","follicular lymphoma variant translocation 1","protein_coding" "Pp1s111_83V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s11_117V6","No alias","Physcomitrella patens","MQN23.1; expressed protein [Arabidopsis thaliana]","protein_coding" "Pp1s121_19V6","No alias","Physcomitrella patens","ubiquitin specific peptidase 16","protein_coding" "Pp1s129_202V6","No alias","Physcomitrella patens","proteasome subunit alpha","protein_coding" "Pp1s132_58V6","No alias","Physcomitrella patens","protein kinase (ame2 afc1)","protein_coding" "Pp1s132_95V6","No alias","Physcomitrella patens","aspartate aminotransferase","protein_coding" "Pp1s136_10V6","No alias","Physcomitrella patens","fpa rna binding","protein_coding" "Pp1s136_73V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s136_86V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s138_112V6","No alias","Physcomitrella patens","MRC8.12; transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]","protein_coding" "Pp1s138_36V6","No alias","Physcomitrella patens","eukaryotic translation initiation factor 3","protein_coding" "Pp1s138_60V6","No alias","Physcomitrella patens","multiple stress-responsive zinc-finger protein","protein_coding" "Pp1s13_19V6","No alias","Physcomitrella patens","brix domain containing 1","protein_coding" "Pp1s144_35V6","No alias","Physcomitrella patens","global transcription factor group","protein_coding" "Pp1s14_373V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s150_45V6","No alias","Physcomitrella patens","T29A15.4; band 7 family protein [Arabidopsis thaliana]","protein_coding" "Pp1s155_98V6","No alias","Physcomitrella patens","rna-binding protein from arabidopsis thaliana gi","protein_coding" "Pp1s158_59V6","No alias","Physcomitrella patens","topoisomerase i","protein_coding" "Pp1s15_388V6","No alias","Physcomitrella patens","organic anion","protein_coding" "Pp1s161_13V6","No alias","Physcomitrella patens","topoisomerase i","protein_coding" "Pp1s162_117V6","No alias","Physcomitrella patens","fibronectin type iii domain containing 3a","protein_coding" "Pp1s174_108V6","No alias","Physcomitrella patens","nucleic acid binding","protein_coding" "Pp1s17_208V6","No alias","Physcomitrella patens","chaperone protein","protein_coding" "Pp1s17_214V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s180_21V6","No alias","Physcomitrella patens","F17J16.140; expressed protein [Arabidopsis thaliana]","protein_coding" "Pp1s180_35V6","No alias","Physcomitrella patens","contains ESTs D28306(R1928A),AU164668(R1928) [Oryza sativa (japonica cultivar-group)]","protein_coding" "Pp1s182_7V6","No alias","Physcomitrella patens","bhlh transcription factor","protein_coding" "Pp1s183_12V6","No alias","Physcomitrella patens","K5J14.2; ubiquitin family [Arabidopsis thaliana]","protein_coding" "Pp1s18_87V6","No alias","Physcomitrella patens","rna binding","protein_coding" "Pp1s193_70V6","No alias","Physcomitrella patens","histone acetyltransferase","protein_coding" "Pp1s196_15V6","No alias","Physcomitrella patens","folylpolyglutamate synthase","protein_coding" "Pp1s1_543V6","No alias","Physcomitrella patens","eukaryotic translation initiation factor 3","protein_coding" "Pp1s1_662V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s1_822V6","No alias","Physcomitrella patens","nucleosome assembly protein i-like protein","protein_coding" "Pp1s213_115V6","No alias","Physcomitrella patens","atp binding","protein_coding" "Pp1s22_343V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s234_38V6","No alias","Physcomitrella patens","mgc80777 protein","protein_coding" "Pp1s235_87V6","No alias","Physcomitrella patens","aspartyl-trna synthetase","protein_coding" "Pp1s237_65V6","No alias","Physcomitrella patens","transferring glycosyl","protein_coding" "Pp1s240_11V6","No alias","Physcomitrella patens","multi-sensor hybrid histidine kinase","protein_coding" "Pp1s240_23V6","No alias","Physcomitrella patens","T16B5.2; eukaryotic translation initiation factor 3 subunit 3 / eIF-3 gamma / eIF3h (TIF3H1) [KO:K03247] [Arabidopsis thaliana]","protein_coding" "Pp1s243_71V6","No alias","Physcomitrella patens","F14N22.21; DEAD box RNA helicase, putative [Arabidopsis thaliana]","protein_coding" "Pp1s245_39V6","No alias","Physcomitrella patens","glycosylation enzyme","protein_coding" "Pp1s24_237V6","No alias","Physcomitrella patens","MFL8.12; amine oxidase family protein [Arabidopsis thaliana]","protein_coding" "Pp1s255_41V6","No alias","Physcomitrella patens","rac-gtp binding","protein_coding" "Pp1s268_63V6","No alias","Physcomitrella patens","Translation initiation factor IF-2 [no tax name]","protein_coding" "Pp1s277_64V6","No alias","Physcomitrella patens","pre-rrna-processing protein","protein_coding" "Pp1s281_13V6","No alias","Physcomitrella patens","F3N23.28; leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana]","protein_coding" "Pp1s286_50V6","No alias","Physcomitrella patens","transporter associated with antigen processing-like protein","protein_coding" "Pp1s290_35V6","No alias","Physcomitrella patens","signal recognition particle receptor alpha","protein_coding" "Pp1s296_11V6","No alias","Physcomitrella patens","F8A24.11; cell division cycle protein 48 (CDC48A) (CDC48) [Arabidopsis thaliana]","protein_coding" "Pp1s30_137V6","No alias","Physcomitrella patens","20s rrna homolog","protein_coding" "Pp1s30_90V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s311_17V6","No alias","Physcomitrella patens","set domain protein","protein_coding" "Pp1s311_61V6","No alias","Physcomitrella patens","zinc ion binding","protein_coding" "Pp1s31_248V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s338_12V6","No alias","Physcomitrella patens","multidrug pheromone mdr abc transporter family","protein_coding" "Pp1s349_6V6","No alias","Physcomitrella patens","K9D7.6; expressed protein [Arabidopsis thaliana]","protein_coding" "Pp1s357_19V6","No alias","Physcomitrella patens","F7H2.12; expressed protein [Arabidopsis thaliana]","protein_coding" "Pp1s373_11V6","No alias","Physcomitrella patens","Putative zinc finger protein","protein_coding" "Pp1s383_3V6","No alias","Physcomitrella patens","MIE1.9; C2 domain-containing protein [Arabidopsis thaliana]","protein_coding" "Pp1s3_553V6","No alias","Physcomitrella patens","26s proteasome regulatory subunit s2","protein_coding" "Pp1s427_2V6","No alias","Physcomitrella patens","zinc finger","protein_coding" "Pp1s42_177V6","No alias","Physcomitrella patens","ubiquitin-specific protease 6","protein_coding" "Pp1s42_257V6","No alias","Physcomitrella patens","esterase lipase thioesterase family protein","protein_coding" "Pp1s42_259V6","No alias","Physcomitrella patens","amidase family protein","protein_coding" "Pp1s460_26V6","No alias","Physcomitrella patens","rna polymerase ii large subunit","protein_coding" "Pp1s47_85V6","No alias","Physcomitrella patens","T15N1.10; pescadillo - like protein [Arabidopsis thaliana]","protein_coding" "Pp1s49_11V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s51_33V6","No alias","Physcomitrella patens","F27M3.14; bystin family [Arabidopsis thaliana]","protein_coding" "Pp1s52_111V6","No alias","Physcomitrella patens","eukaryotic translation initiation factor 3","protein_coding" "Pp1s53_181V6","No alias","Physcomitrella patens","rna polymerase ii associated protein 1","protein_coding" "Pp1s54_107V6","No alias","Physcomitrella patens","abc fatty acid","protein_coding" "Pp1s54_78V6","No alias","Physcomitrella patens","dead (asp-glu-ala-asp) box polypeptide 56","protein_coding" "Pp1s61_39V6","No alias","Physcomitrella patens","nuclear receptor co-repressor 1","protein_coding" "Pp1s62_85V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s6_217V6","No alias","Physcomitrella patens","alpha beta hydrolase domain containing protein","protein_coding" "Pp1s74_122V6","No alias","Physcomitrella patens","F25E4.40; eukaryotic translation initiation factor 3 subunit 10 / eIF-3 theta / eIF3a (TIF3A1) [KO:K03254] [Arabidopsis thaliana]","protein_coding" "Pp1s76_12V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s795_4V6","No alias","Physcomitrella patens","T6K21.1; human Rev interacting-like family protein / hRIP family protein [Arabidopsis thaliana]","protein_coding" "Pp1s7_51V6","No alias","Physcomitrella patens","phox domain-containing expressed","protein_coding" "Pp1s7_96V6","No alias","Physcomitrella patens","pre-rrna processing protein","protein_coding" "Pp1s83_140V6","No alias","Physcomitrella patens","Neurofilament triplet H protein (200 kDa neurofilament protein) (Neurofilament heavy polypeptide) (NF-H) [no tax name]","protein_coding" "Pp1s95_121V6","No alias","Physcomitrella patens","nucleic acid binding","protein_coding" "Pp1s96_61V6","No alias","Physcomitrella patens","eukaryotic translation initiation factor","protein_coding" "PSME_00000098-RA","No alias","Pseudotsuga menziesii","(at3g25500 : 458.0) Poly-L-proline-containing (PLP) protein that form part of the signal-transduction cascade that leads to rearrangement of the actin cytoskeleton. AFH1 is a nonprocessive formin that moves from the barbered end to the side of an actin filament after the nucleation event.; formin homology 1 (AFH1); FUNCTIONS IN: actin binding, protein binding, actin filament binding; INVOLVED IN: actin cytoskeleton organization; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: Actin-binding FH2 (formin homology 2) family protein (TAIR:AT2G43800.1); Has 17339 Blast hits to 10806 proteins in 665 species: Archae - 8; Bacteria - 1434; Metazoa - 6069; Fungi - 2556; Plants - 3390; Viruses - 718; Other Eukaryotes - 3164 (source: NCBI BLink). & (reliability: 916.0) & (original description: no original description)","protein_coding" "PSME_00000133-RA","No alias","Pseudotsuga menziesii","(at1g71350 : 684.0) eukaryotic translation initiation factor SUI1 family protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Translation initiation factor SUI1 (InterPro:IPR001950), SWIB/MDM2 domain (InterPro:IPR003121), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (TAIR:AT1G09150.1); Has 1013 Blast hits to 993 proteins in 255 species: Archae - 62; Bacteria - 0; Metazoa - 354; Fungi - 333; Plants - 100; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink). & (reliability: 1368.0) & (original description: no original description)","protein_coding" "PSME_00000476-RA","No alias","Pseudotsuga menziesii","(q6f2y7|hs101_orysa : 1375.0) Heat shock protein 101 - Oryza sativa (Rice) & (at1g74310 : 1319.0) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101. AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.; heat shock protein 101 (HSP101); FUNCTIONS IN: protein binding, ATPase activity, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 (TAIR:AT4G14670.1); Has 27671 Blast hits to 24472 proteins in 3146 species: Archae - 360; Bacteria - 17866; Metazoa - 1124; Fungi - 430; Plants - 707; Viruses - 13; Other Eukaryotes - 7171 (source: NCBI BLink). & (reliability: 2638.0) & (original description: no original description)","protein_coding" "PSME_00000515-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00000581-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00000734-RA","No alias","Pseudotsuga menziesii","(at1g60560 : 90.1) SWIM zinc finger family protein; BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G13970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 180.2) & (original description: no original description)","protein_coding" "PSME_00000773-RA","No alias","Pseudotsuga menziesii","(at2g44580 : 255.0) zinc ion binding; CONTAINS InterPro DOMAIN/s: Sister chromatid cohesion protein DCC1 (InterPro:IPR019128); Has 214 Blast hits to 211 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 49; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 510.0) & (original description: no original description)","protein_coding" "PSME_00000882-RA","No alias","Pseudotsuga menziesii","(at5g66540 : 290.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 580.0) & (original description: no original description)","protein_coding" "PSME_00001025-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00001093-RA","No alias","Pseudotsuga menziesii","(at2g28420 : 178.0) Lactoylglutathione lyase / glyoxalase I family protein; CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Lactoylglutathione lyase / glyoxalase I family protein (TAIR:AT1G80160.1); Has 1054 Blast hits to 1054 proteins in 326 species: Archae - 2; Bacteria - 538; Metazoa - 105; Fungi - 6; Plants - 229; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink). & (reliability: 356.0) & (original description: no original description)","protein_coding" "PSME_00001109-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00001478-RA","No alias","Pseudotsuga menziesii","(at3g16090 : 505.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G65040.2); Has 7341 Blast hits to 7321 proteins in 267 species: Archae - 0; Bacteria - 4; Metazoa - 2254; Fungi - 727; Plants - 3286; Viruses - 21; Other Eukaryotes - 1049 (source: NCBI BLink). & (reliability: 1010.0) & (original description: no original description)","protein_coding" "PSME_00001650-RA","No alias","Pseudotsuga menziesii","(at4g11050 : 540.0) glycosyl hydrolase 9C3 (GH9C3); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Carbohydrate-binding (InterPro:IPR008965), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C2 (TAIR:AT1G64390.1); Has 1895 Blast hits to 1880 proteins in 271 species: Archae - 2; Bacteria - 695; Metazoa - 181; Fungi - 19; Plants - 923; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). & (q5nat0|gun2_orysa : 482.0) Endoglucanase 2 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 2) (OsGLU5) - Oryza sativa (Rice) & (reliability: 1080.0) & (original description: no original description)","protein_coding" "PSME_00001817-RA","No alias","Pseudotsuga menziesii","(at5g09220 : 676.0) member of AAAP family; amino acid permease 2 (AAP2); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid permease 4 (TAIR:AT5G63850.1); Has 2701 Blast hits to 2684 proteins in 226 species: Archae - 0; Bacteria - 6; Metazoa - 573; Fungi - 420; Plants - 1375; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink). & (reliability: 1352.0) & (original description: no original description)","protein_coding" "PSME_00001904-RA","No alias","Pseudotsuga menziesii","(at1g79740 : 131.0) hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description)","protein_coding" "PSME_00002026-RA","No alias","Pseudotsuga menziesii","(at1g17690 : 652.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Digestive organ expansion factor, predicted (InterPro:IPR010678); Has 25006 Blast hits to 13379 proteins in 904 species: Archae - 102; Bacteria - 5571; Metazoa - 7448; Fungi - 3168; Plants - 1056; Viruses - 466; Other Eukaryotes - 7195 (source: NCBI BLink). & (reliability: 1304.0) & (original description: no original description)","protein_coding" "PSME_00002152-RA","No alias","Pseudotsuga menziesii","(at5g07050 : 247.0) nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT2G40900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 494.0) & (original description: no original description)","protein_coding" "PSME_00002232-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00002452-RA","No alias","Pseudotsuga menziesii","(at1g70630 : 407.0) Nucleotide-diphospho-sugar transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: xyloglucanase 113 (TAIR:AT2G35610.1); Has 427 Blast hits to 427 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 379; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). & (reliability: 814.0) & (original description: no original description)","protein_coding" "PSME_00002622-RA","No alias","Pseudotsuga menziesii","(at2g20560 : 450.0) DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G28480.1); Has 27936 Blast hits to 27733 proteins in 3449 species: Archae - 187; Bacteria - 10270; Metazoa - 4781; Fungi - 2609; Plants - 2869; Viruses - 17; Other Eukaryotes - 7203 (source: NCBI BLink). & (q04960|dnjh_cucsa : 154.0) DnaJ protein homolog (DNAJ-1) - Cucumis sativus (Cucumber) & (reliability: 900.0) & (original description: no original description)","protein_coding" "PSME_00002672-RA","No alias","Pseudotsuga menziesii","(at1g49050 : 93.6) Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G44130.1); Has 2404 Blast hits to 2397 proteins in 188 species: Archae - 0; Bacteria - 0; Metazoa - 548; Fungi - 114; Plants - 1670; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink). & (reliability: 187.2) & (original description: no original description)","protein_coding" "PSME_00002728-RA","No alias","Pseudotsuga menziesii","(at2g38820 : 143.0) Protein of unknown function (DUF506) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT3G22970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 286.0) & (original description: no original description)","protein_coding" "PSME_00002729-RA","No alias","Pseudotsuga menziesii","(at4g14620 : 143.0) Protein of unknown function (DUF506) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT3G22970.1); Has 402 Blast hits to 400 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 397; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). & (reliability: 286.0) & (original description: no original description)","protein_coding" "PSME_00002732-RA","No alias","Pseudotsuga menziesii","(at3g07350 : 150.0) Protein of unknown function (DUF506) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT3G25240.1); Has 393 Blast hits to 390 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 391; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). & (reliability: 300.0) & (original description: no original description)","protein_coding" "PSME_00002875-RA","No alias","Pseudotsuga menziesii","(at3g54720 : 224.0) Encodes glutamate carboxypeptidase. Various alleles show-increased cotyledon number and rate of leaf initiation, show transformation of leaves to cotyledons, altered flowering time and photomorphogenesis and an increased level of cytokinin biosynthesis. Involved in ethylene enhanced hypocotyl elongation in the light. Strong genetic interaction between TGH and AMP1.; ALTERED MERISTEM PROGRAM 1 (AMP1); CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Transferrin receptor-like, dimerisation (InterPro:IPR007365), Peptidase M28 (InterPro:IPR007484); BEST Arabidopsis thaliana protein match is: Peptidase M28 family protein (TAIR:AT5G19740.1); Has 3363 Blast hits to 3338 proteins in 594 species: Archae - 10; Bacteria - 1310; Metazoa - 699; Fungi - 446; Plants - 316; Viruses - 0; Other Eukaryotes - 582 (source: NCBI BLink). & (reliability: 448.0) & (original description: no original description)","protein_coding" "PSME_00003052-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00003263-RA","No alias","Pseudotsuga menziesii","(at4g02780 : 383.0) Catalyzes the conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) of gibberellin biosynthesis; GA REQUIRING 1 (GA1); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT1G79460.1); Has 1979 Blast hits to 1971 proteins in 256 species: Archae - 0; Bacteria - 97; Metazoa - 0; Fungi - 61; Plants - 1817; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (o04408|ksa_pea : 374.0) Ent-kaurene synthase A, chloroplast precursor (EC 5.5.1.13) (Ent-copalyl diphosphate synthase) (KSA) - Pisum sativum (Garden pea) & (reliability: 766.0) & (original description: no original description)","protein_coding" "PSME_00003309-RA","No alias","Pseudotsuga menziesii","(at3g02470 : 189.0) Encodes a S-adenosylmethionine decarboxylase involved in polyamine biosynthesis.; S-adenosylmethionine decarboxylase; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: Adenosylmethionine decarboxylase family protein (TAIR:AT5G15950.2); Has 1026 Blast hits to 1010 proteins in 271 species: Archae - 0; Bacteria - 57; Metazoa - 220; Fungi - 150; Plants - 531; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink). & (q42613|dcam1_braju : 186.0) S-adenosylmethionine decarboxylase proenzyme 1 (EC 4.1.1.50) (AdoMetDC 1) (SamDC 1) [Contains: S-adenosylmethionine decarboxylase 1 alpha chain; S-adenosylmethionine decarboxylase 1 beta chain] - Brassica juncea (Leaf mustard) (Indian & (reliability: 378.0) & (original description: no original description)","protein_coding" "PSME_00003385-RA","No alias","Pseudotsuga menziesii","(at1g15960 : 494.0) member of Nramp2 family; NRAMP metal ion transporter 6 (NRAMP6); FUNCTIONS IN: inorganic anion transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: cellular metal ion homeostasis, metal ion transport; LOCATED IN: membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046); BEST Arabidopsis thaliana protein match is: natural resistance-associated macrophage protein 1 (TAIR:AT1G80830.1); Has 5518 Blast hits to 5467 proteins in 1679 species: Archae - 118; Bacteria - 4110; Metazoa - 356; Fungi - 271; Plants - 336; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink). & (reliability: 988.0) & (original description: no original description)","protein_coding" "PSME_00003386-RA","No alias","Pseudotsuga menziesii","(at1g80830 : 531.0) Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yeast iron uptake mutants.; natural resistance-associated macrophage protein 1 (NRAMP1); CONTAINS InterPro DOMAIN/s: Natural resistance-associated macrophage protein (InterPro:IPR001046); BEST Arabidopsis thaliana protein match is: NRAMP metal ion transporter 6 (TAIR:AT1G15960.1); Has 5566 Blast hits to 5511 proteins in 1695 species: Archae - 118; Bacteria - 4154; Metazoa - 357; Fungi - 273; Plants - 337; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink). & (reliability: 1062.0) & (original description: no original description)","protein_coding" "PSME_00003608-RA","No alias","Pseudotsuga menziesii","(at2g40180 : 239.0) Encodes PP2C5, a member of the PP2C family phosphatases. PP2C5 acts as a MAPK phosphatase that positively regulates seed germination, stomatal closure and ABA-inducible gene expression.; phosphatase 2C5 (PP2C5); CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G07160.1); Has 6862 Blast hits to 6800 proteins in 519 species: Archae - 10; Bacteria - 469; Metazoa - 1632; Fungi - 782; Plants - 2690; Viruses - 9; Other Eukaryotes - 1270 (source: NCBI BLink). & (reliability: 478.0) & (original description: no original description)","protein_coding" "PSME_00003643-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00003647-RA","No alias","Pseudotsuga menziesii","(at4g29880 : 250.0) Encodes PIRL7, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.; plant intracellular ras group-related LRR 7 (PIRL7); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 6 (TAIR:AT2G19330.1); Has 62582 Blast hits to 28443 proteins in 1064 species: Archae - 25; Bacteria - 6458; Metazoa - 27380; Fungi - 2135; Plants - 22921; Viruses - 26; Other Eukaryotes - 3637 (source: NCBI BLink). & (reliability: 490.0) & (original description: no original description)","protein_coding" "PSME_00003800-RA","No alias","Pseudotsuga menziesii","(at3g48090 : 93.2) Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases.; enhanced disease susceptibility 1 (EDS1); CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G48080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 168.0) & (original description: no original description)","protein_coding" "PSME_00004044-RA","No alias","Pseudotsuga menziesii","(at1g77380 : 466.0) Amino acid permease which transports basic amino acids.; amino acid permease 3 (AAP3); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid permease 2 (TAIR:AT5G09220.1); Has 2346 Blast hits to 2332 proteins in 227 species: Archae - 0; Bacteria - 15; Metazoa - 394; Fungi - 322; Plants - 1373; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink). & (reliability: 932.0) & (original description: no original description)","protein_coding" "PSME_00004073-RA","No alias","Pseudotsuga menziesii","(at5g45030 : 429.0) Trypsin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003); BEST Arabidopsis thaliana protein match is: Trypsin family protein (TAIR:AT2G35155.1); Has 134 Blast hits to 134 proteins in 31 species: Archae - 0; Bacteria - 55; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 858.0) & (original description: no original description)","protein_coding" "PSME_00004300-RA","No alias","Pseudotsuga menziesii","(at4g26000 : 85.1) Encodes a novel Arabidopsis gene encoding a polypeptide with K-homology (KH) RNA-binding modules, which acts on vegetative growth and pistil development. Genetic studies suggest that PEP interacts with element(s) of the CLAVATA signaling pathway.; PEPPER (PEP); FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: shoot development, gynoecium development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT3G04610.1); Has 2804 Blast hits to 2065 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 1818; Fungi - 225; Plants - 670; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink). & (reliability: 170.2) & (original description: no original description)","protein_coding" "PSME_00004555-RA","No alias","Pseudotsuga menziesii","(at4g11050 : 136.0) glycosyl hydrolase 9C3 (GH9C3); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Carbohydrate-binding (InterPro:IPR008965), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C2 (TAIR:AT1G64390.1); Has 1895 Blast hits to 1880 proteins in 271 species: Archae - 2; Bacteria - 695; Metazoa - 181; Fungi - 19; Plants - 923; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). & (q5nat0|gun2_orysa : 114.0) Endoglucanase 2 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 2) (OsGLU5) - Oryza sativa (Rice) & (reliability: 272.0) & (original description: no original description)","protein_coding" "PSME_00004624-RA","No alias","Pseudotsuga menziesii","(at5g63840 : 200.0) radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme.; RADIAL SWELLING 3 (RSW3); FUNCTIONS IN: glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to cadmium ion, cellulose biosynthetic process, defense response to bacterium, unidimensional cell growth; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322); BEST Arabidopsis thaliana protein match is: heteroglycan glucosidase 1 (TAIR:AT3G23640.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 400.0) & (original description: no original description)","protein_coding" "PSME_00004798-RA","No alias","Pseudotsuga menziesii","(at4g33260 : 424.0) putative cdc20 protein (CDC20.2); CDC20.2; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT4G33270.1). & (reliability: 846.0) & (original description: no original description)","protein_coding" "PSME_00004858-RA","No alias","Pseudotsuga menziesii","(at5g07280 : 430.0) Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther.; EXCESS MICROSPOROCYTES1 (EMS1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT4G20140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p93194|rpk1_iponi : 237.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 860.0) & (original description: no original description)","protein_coding" "PSME_00004939-RA","No alias","Pseudotsuga menziesii","(at1g77450 : 238.0) NAC domain containing protein 32 (NAC032); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT1G01720.1); Has 3015 Blast hits to 3009 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3015; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (q7f2l3|nac48_orysa : 238.0) NAC domain-containing protein 48 (ONAC048) - Oryza sativa (Rice) & (reliability: 476.0) & (original description: no original description)","protein_coding" "PSME_00004944-RA","No alias","Pseudotsuga menziesii","(at1g04600 : 83.6) member of Myosin-like proteins; myosin XI A (XIA); FUNCTIONS IN: motor activity; INVOLVED IN: actin filament-based movement; LOCATED IN: myosin complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Dil domain (InterPro:IPR018444), Dilute (InterPro:IPR002710), Prefoldin (InterPro:IPR009053), Myosin, N-terminal, SH3-like (InterPro:IPR004009), Myosin head, motor domain (InterPro:IPR001609), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: myosin XI D (TAIR:AT2G33240.1); Has 140144 Blast hits to 79260 proteins in 3527 species: Archae - 2295; Bacteria - 25176; Metazoa - 58445; Fungi - 12073; Plants - 6566; Viruses - 744; Other Eukaryotes - 34845 (source: NCBI BLink). & (reliability: 167.2) & (original description: no original description)","protein_coding" "PSME_00005052-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00005099-RA","No alias","Pseudotsuga menziesii","(at3g02720 : 174.0) Class I glutamine amidotransferase-like superfamily protein; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C56, PfpI (InterPro:IPR006286), ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT2G38860.2); Has 9235 Blast hits to 5440 proteins in 1716 species: Archae - 384; Bacteria - 8047; Metazoa - 84; Fungi - 88; Plants - 239; Viruses - 0; Other Eukaryotes - 393 (source: NCBI BLink). & (reliability: 348.0) & (original description: no original description)","protein_coding" "PSME_00005108-RA","No alias","Pseudotsuga menziesii","(at5g63180 : 441.0) Pectin lyase-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G24780.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p40973|pel_lillo : 333.0) Pectate lyase precursor (EC 4.2.2.2) - Lilium longiflorum (Trumpet lily) & (reliability: 882.0) & (original description: no original description)","protein_coding" "PSME_00005157-RA","No alias","Pseudotsuga menziesii","(q769e5|cax1a_orysa : 389.0) Vacuolar cation/proton exchanger 1a (Ca(2+)/H(+) exchanger 1a) (OsCAX1a) - Oryza sativa (Rice) & (at3g51860 : 387.0) cation exchanger 3 (CAX3); CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837), Calcium/proton exchanger superfamily (InterPro:IPR004798), Calcium/proton exchanger (InterPro:IPR004713); BEST Arabidopsis thaliana protein match is: cation exchanger 1 (TAIR:AT2G38170.1); Has 3567 Blast hits to 3405 proteins in 1022 species: Archae - 24; Bacteria - 2167; Metazoa - 14; Fungi - 725; Plants - 252; Viruses - 0; Other Eukaryotes - 385 (source: NCBI BLink). & (reliability: 774.0) & (original description: no original description)","protein_coding" "PSME_00005169-RA","No alias","Pseudotsuga menziesii","(o24301|sus2_pea : 820.0) Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 2) - Pisum sativum (Garden pea) & (at4g02280 : 817.0) Encodes a protein with sucrose synthase activity (SUS3). It appears to be important for sucrose metabolism in developing seeds, especially during the late maturation phase, about 18 days after flowering.; sucrose synthase 3 (SUS3); CONTAINS InterPro DOMAIN/s: Sucrose synthase, plant/cyanobacteria (InterPro:IPR012820), Sucrose synthase (InterPro:IPR000368), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: sucrose synthase 2 (TAIR:AT5G49190.1); Has 6506 Blast hits to 6505 proteins in 1621 species: Archae - 256; Bacteria - 4351; Metazoa - 95; Fungi - 50; Plants - 824; Viruses - 0; Other Eukaryotes - 930 (source: NCBI BLink). & (reliability: 1634.0) & (original description: no original description)","protein_coding" "PSME_00005215-RA","No alias","Pseudotsuga menziesii","(at5g51300 : 105.0) splicing factor-related; FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA splicing; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), RNA recognition motif, RNP-1 (InterPro:IPR000504), K Homology, type 1 (InterPro:IPR004088), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT1G09660.1); Has 82686 Blast hits to 53020 proteins in 1818 species: Archae - 38; Bacteria - 8214; Metazoa - 37936; Fungi - 14163; Plants - 12444; Viruses - 1255; Other Eukaryotes - 8636 (source: NCBI BLink). & (reliability: 210.0) & (original description: no original description)","protein_coding" "PSME_00005341-RA","No alias","Pseudotsuga menziesii","(q6f2y7|hs101_orysa : 1383.0) Heat shock protein 101 - Oryza sativa (Rice) & (at1g74310 : 1342.0) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101. AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.; heat shock protein 101 (HSP101); FUNCTIONS IN: protein binding, ATPase activity, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 (TAIR:AT4G14670.1); Has 27671 Blast hits to 24472 proteins in 3146 species: Archae - 360; Bacteria - 17866; Metazoa - 1124; Fungi - 430; Plants - 707; Viruses - 13; Other Eukaryotes - 7171 (source: NCBI BLink). & (reliability: 2684.0) & (original description: no original description)","protein_coding" "PSME_00005437-RA","No alias","Pseudotsuga menziesii","(at1g53050 : 292.0) Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G09600.1); Has 124596 Blast hits to 123234 proteins in 4130 species: Archae - 92; Bacteria - 13981; Metazoa - 46101; Fungi - 12764; Plants - 31065; Viruses - 453; Other Eukaryotes - 20140 (source: NCBI BLink). & (reliability: 584.0) & (original description: no original description)","protein_coding" "PSME_00005450-RA","No alias","Pseudotsuga menziesii","(at4g33270 : 218.0) putative cdc20 protein (CDC20.1); CDC20.1; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT4G33260.1); Has 49595 Blast hits to 24757 proteins in 709 species: Archae - 60; Bacteria - 7548; Metazoa - 19325; Fungi - 10981; Plants - 5978; Viruses - 0; Other Eukaryotes - 5703 (source: NCBI BLink). & (reliability: 436.0) & (original description: no original description)","protein_coding" "PSME_00005618-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00005767-RA","No alias","Pseudotsuga menziesii","(at3g49180 : 275.0) ROOT INITIATION DEFECTIVE 3 (RID3); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G11160.1); Has 42486 Blast hits to 21489 proteins in 714 species: Archae - 48; Bacteria - 7251; Metazoa - 15456; Fungi - 9258; Plants - 4698; Viruses - 0; Other Eukaryotes - 5775 (source: NCBI BLink). & (reliability: 550.0) & (original description: no original description)","protein_coding" "PSME_00005847-RA","No alias","Pseudotsuga menziesii","(at1g01780 : 120.0) GATA type zinc finger transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G45800.1); Has 4819 Blast hits to 3002 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 4032; Fungi - 22; Plants - 446; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink). & (p29675|sf3_helan : 91.7) Pollen-specific protein SF3 - Helianthus annuus (Common sunflower) & (reliability: 238.0) & (original description: no original description)","protein_coding" "PSME_00005950-RA","No alias","Pseudotsuga menziesii","(at3g51895 : 758.0) Encodes a sulfate transporter.; sulfate transporter 3;1 (SULTR3;1); FUNCTIONS IN: secondary active sulfate transmembrane transporter activity, transporter activity, sulfate transmembrane transporter activity; INVOLVED IN: sulfate transport, transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sulphate transporter (InterPro:IPR011547), Sulphate transporter/antisigma-factor antagonist STAS (InterPro:IPR002645), Sulphate anion transporter, conserved site (InterPro:IPR018045), Sulphate anion transporter (InterPro:IPR001902); BEST Arabidopsis thaliana protein match is: sulfate transporter 3;2 (TAIR:AT4G02700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q02920|no70_soybn : 340.0) Early nodulin 70 - Glycine max (Soybean) & (reliability: 1516.0) & (original description: no original description)","protein_coding" "PSME_00006002-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00006153-RA","No alias","Pseudotsuga menziesii","(at3g13772 : 934.0) Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis. Overexpression of this protein in yeast alters copper and zinc homeostasis.; transmembrane nine 7 (TMN7); INVOLVED IN: cellular copper ion homeostasis, cellular zinc ion homeostasis; LOCATED IN: integral to membrane, Golgi apparatus, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT1G55130.1); Has 1568 Blast hits to 1544 proteins in 321 species: Archae - 0; Bacteria - 1; Metazoa - 615; Fungi - 232; Plants - 456; Viruses - 0; Other Eukaryotes - 264 (source: NCBI BLink). & (reliability: 1838.0) & (original description: no original description)","protein_coding" "PSME_00006194-RA","No alias","Pseudotsuga menziesii","(at5g55300 : 90.5) Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. Functions in stem cell maintenance at all stages of shoot and floral meristems and in the regulation of gene silencing.; DNA topoisomerase I alpha (TOP1ALPHA); FUNCTIONS IN: protein binding, DNA topoisomerase type I activity; INVOLVED IN: in 8 processes; LOCATED IN: chromosome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499); BEST Arabidopsis thaliana protein match is: DNA topoisomerase 1 beta (TAIR:AT5G55310.1). & (reliability: 181.0) & (original description: no original description)","protein_coding" "PSME_00006239-RA","No alias","Pseudotsuga menziesii","(at1g15210 : 162.0) pleiotropic drug resistance 7 (PDR7); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: drug transmembrane transport; LOCATED IN: plasma membrane, chloroplast, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ABC-2 and Plant PDR ABC-type transporter family protein (TAIR:AT1G59870.1); Has 383488 Blast hits to 290790 proteins in 4017 species: Archae - 7218; Bacteria - 309544; Metazoa - 9443; Fungi - 7090; Plants - 6323; Viruses - 4; Other Eukaryotes - 43866 (source: NCBI BLink). & (q8gu86|pdr5_orysa : 161.0) Pleiotropic drug resistance protein 5 - Oryza sativa (Rice) & (reliability: 324.0) & (original description: no original description)","protein_coding" "PSME_00006262-RA","No alias","Pseudotsuga menziesii","(at1g51440 : 139.0) Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols.; alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: galactolipase activity, triglyceride lipase activity, phospholipase A1 activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G30550.2); Has 1155 Blast hits to 1147 proteins in 234 species: Archae - 0; Bacteria - 238; Metazoa - 19; Fungi - 161; Plants - 563; Viruses - 5; Other Eukaryotes - 169 (source: NCBI BLink). & (reliability: 278.0) & (original description: no original description)","protein_coding" "PSME_00006267-RA","No alias","Pseudotsuga menziesii","(at5g04720 : 107.0) ADR1-like 2 (ADR1-L2); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: apoptosis, defense response; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Powdery mildew resistance protein, RPW8 domain (InterPro:IPR008808), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: ADR1-like 1 (TAIR:AT4G33300.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 214.0) & (original description: no original description)","protein_coding" "PSME_00006335-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00006514-RA","No alias","Pseudotsuga menziesii","(at1g27600 : 414.0) Encodes a member of the GT43 family glycosyltransferases involved in glucuronoxylan biosynthesis: AT2G37090 (IRX9) and AT1G27600 (IRX9-L or I9H, IRX9 homolog); AT4G36890 (IRX14) and AT5G67230 (IRX14-L or I14H, IRX14 homolog). They form two functionally non-redundant groups essential for the normal elongation of glucuronoxylan backbone. I9H functions redundantly with IRX9, I14H is redundant with IRX14. IRX9 or I9H do not complement IRX14, IRX14 or I14H do not complement IRX9.; IRREGULAR XYLEM 9-LIKE (IRX9-L); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 43 (InterPro:IPR005027); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT2G37090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 828.0) & (original description: no original description)","protein_coding" "PSME_00006519-RA","No alias","Pseudotsuga menziesii","(at3g28345 : 1327.0) ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: shoot apex, inflorescence meristem, cotyledon, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 17 (TAIR:AT3G28380.1); Has 822177 Blast hits to 385706 proteins in 4160 species: Archae - 14477; Bacteria - 641696; Metazoa - 17642; Fungi - 12086; Plants - 9535; Viruses - 48; Other Eukaryotes - 126693 (source: NCBI BLink). & (q6yuu5|mdr_orysa : 1292.0) Putative multidrug resistance protein (P-glycoprotein) - Oryza sativa (Rice) & (reliability: 2654.0) & (original description: no original description)","protein_coding" "PSME_00006710-RA","No alias","Pseudotsuga menziesii","(at4g25400 : 87.4) basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G51780.1); Has 180 Blast hits to 180 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 180; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 174.8) & (original description: no original description)","protein_coding" "PSME_00006769-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00006874-RA","No alias","Pseudotsuga menziesii","(at2g03140 : 198.0) alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675); BEST Arabidopsis thaliana protein match is: esterase/lipase/thioesterase family protein (TAIR:AT3G50790.1). & (reliability: 396.0) & (original description: no original description)","protein_coding" "PSME_00006918-RA","No alias","Pseudotsuga menziesii","(p48522|tcmo_catro : 223.0) Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) - Catharanthus roseus (Rosy periwinkle) (Madagascar periwinkle) & (at2g30490 : 215.0) Encodes a cinnamate-4-hydroxylase. Mutations in this gene impact phenylpropanoid metabolism, growth and development.; cinnamate-4-hydroxylase (C4H); FUNCTIONS IN: trans-cinnamate 4-monooxygenase activity; INVOLVED IN: in 9 processes; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 98, subfamily A, polypeptide 3 (TAIR:AT2G40890.1); Has 31278 Blast hits to 31002 proteins in 1609 species: Archae - 48; Bacteria - 2734; Metazoa - 11804; Fungi - 6596; Plants - 9113; Viruses - 3; Other Eukaryotes - 980 (source: NCBI BLink). & (reliability: 430.0) & (original description: no original description)","protein_coding" "PSME_00007010-RA","No alias","Pseudotsuga menziesii","(at5g55310 : 160.0) Encodes one of two Arabidopsis type-I DNA topoisomerase I genes. Reducing the level of expression of this gene in a top1alpha (At5g55300) mutant background causes seedling lethality.; DNA topoisomerase 1 beta (TOP1BETA); FUNCTIONS IN: DNA topoisomerase type I activity; INVOLVED IN: DNA topological change; LOCATED IN: membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, DNA binding, mixed alpha/beta motif, eukaryotic-type (InterPro:IPR013030), DNA topoisomerase I, DNA binding, eukaryotic-type (InterPro:IPR008336), DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010); BEST Arabidopsis thaliana protein match is: DNA topoisomerase I alpha (TAIR:AT5G55300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p93119|top1_dauca : 141.0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) - Daucus carota (Carrot) & (reliability: 320.0) & (original description: no original description)","protein_coding" "PSME_00007039-RA","No alias","Pseudotsuga menziesii","(at3g44850 : 558.0) Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G22840.1); Has 38681 Blast hits to 29843 proteins in 1092 species: Archae - 4; Bacteria - 1517; Metazoa - 15700; Fungi - 7143; Plants - 6601; Viruses - 16; Other Eukaryotes - 7700 (source: NCBI BLink). & (reliability: 1116.0) & (original description: no original description)","protein_coding" "PSME_00007149-RA","No alias","Pseudotsuga menziesii","(q52qh4|nac68_orysa : 199.0) NAC domain-containing protein 68 (ONAC068) - Oryza sativa (Rice) & (at1g01720 : 196.0) Belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding and abscisic acid. ATAF1 attentuates ABA signaling and sythesis. Mutants are hyposensitive to ABA.; ATAF1; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 32 (TAIR:AT1G77450.1); Has 3043 Blast hits to 3037 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3043; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 370.0) & (original description: no original description)","protein_coding" "PSME_00007324-RA","No alias","Pseudotsuga menziesii","(at3g22590 : 161.0) Encodes PLANT HOMOLOGOUS TO PARAFIBROMIN (PHP), a homolog of human Paf1 Complex (Paf1C) subunit Parafibromin. Human Parafibromin assists in mediating output from the Wnt signaling pathway, and dysfunction of the encoding gene HRPT2 conditions specific cancer-related disease phenotypes. PHP resides in a ~670-kDa protein complex in nuclear extracts, and physically interacts with other known Paf1C-related proteins in vivo. Loss of PHP specifically conditioned accelerated phase transition from vegetative growth to flowering and resulted in misregulation of a very limited subset of genes that included the flowering repressor FLOWERING LOCUS C (FLC).; PLANT HOMOLOGOUS TO PARAFIBROMIN (PHP); CONTAINS InterPro DOMAIN/s: RNA polymerase II accessory factor, Cdc73 (InterPro:IPR007852); Has 502 Blast hits to 395 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 257; Fungi - 127; Plants - 42; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). & (reliability: 322.0) & (original description: no original description)","protein_coding" "PSME_00007414-RA","No alias","Pseudotsuga menziesii","(q01899|hsp7m_phavu : 1033.0) Heat shock 70 kDa protein, mitochondrial precursor - Phaseolus vulgaris (Kidney bean) (French bean) & (at5g09590 : 1018.0) heat shock protein 70 (Hsc70-5); nuclear; mitochondrial HSO70 2 (MTHSC70-2); FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to salt stress, response to virus, response to heat; LOCATED IN: mitochondrion, cell wall, plasma membrane, chloroplast, mitochondrial matrix; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Chaperone DnaK (InterPro:IPR012725), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: mitochondrial heat shock protein 70-1 (TAIR:AT4G37910.1); Has 35090 Blast hits to 34955 proteins in 4871 species: Archae - 160; Bacteria - 17405; Metazoa - 3531; Fungi - 1665; Plants - 1246; Viruses - 305; Other Eukaryotes - 10778 (source: NCBI BLink). & (reliability: 2036.0) & (original description: no original description)","protein_coding" "PSME_00007459-RA","No alias","Pseudotsuga menziesii","(at2g39220 : 414.0) PATATIN-like protein 6 (PLP6); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: metabolic process, lipid metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: patatin-like protein 6 (TAIR:AT3G54950.1); Has 1294 Blast hits to 1292 proteins in 232 species: Archae - 0; Bacteria - 327; Metazoa - 139; Fungi - 43; Plants - 635; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). & (p15478|pat5_soltu : 134.0) Patatin T5 precursor (Potato tuber protein) - Solanum tuberosum (Potato) & (reliability: 828.0) & (original description: no original description)","protein_coding" "PSME_00007513-RA","No alias","Pseudotsuga menziesii","(at4g01130 : 180.0) GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G26430.1); Has 3308 Blast hits to 3260 proteins in 151 species: Archae - 0; Bacteria - 130; Metazoa - 0; Fungi - 52; Plants - 3122; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (q7y1x1|est_hevbr : 144.0) Esterase precursor (EC 3.1.1.-) (Early nodule-specific protein homolog) (Latex allergen Hev b 13) - Hevea brasiliensis (Para rubber tree) & (reliability: 360.0) & (original description: no original description)","protein_coding" "PSME_00007514-RA","No alias","Pseudotsuga menziesii","(at3g17450 : 85.5) hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink). & (reliability: 171.0) & (original description: no original description)","protein_coding" "PSME_00007789-RA","No alias","Pseudotsuga menziesii","(at1g43710 : 534.0) embryo defective 1075 (emb1075); FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity; INVOLVED IN: cellular amino acid metabolic process, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal-phosphate binding site (InterPro:IPR021115), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 2 (TAIR:AT1G65960.1); Has 3259 Blast hits to 3251 proteins in 995 species: Archae - 187; Bacteria - 1878; Metazoa - 518; Fungi - 211; Plants - 249; Viruses - 11; Other Eukaryotes - 205 (source: NCBI BLink). & (reliability: 1068.0) & (original description: no original description)","protein_coding" "PSME_00007857-RA","No alias","Pseudotsuga menziesii","(at3g47890 : 751.0) Ubiquitin carboxyl-terminal hydrolase-related protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF627 (InterPro:IPR006866), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Zinc finger, C2H2-type (InterPro:IPR007087), Protein of unknown function DUF629 (InterPro:IPR006865); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase-related protein (TAIR:AT3G47910.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1502.0) & (original description: no original description)","protein_coding" "PSME_00007916-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00007947-RA","No alias","Pseudotsuga menziesii","(at4g34370 : 140.0) ARIADNE 1 (ARI1); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G16090.1). & (reliability: 280.0) & (original description: no original description)","protein_coding" "PSME_00007950-RA","No alias","Pseudotsuga menziesii","(at3g26400 : 194.0) member of eIF4B - eukaryotic initiation factor 4B; eukaryotic translation initiation factor 4B1 (EIF4B1); CONTAINS InterPro DOMAIN/s: Plant specific eukaryotic initiation factor 4B (InterPro:IPR010433); BEST Arabidopsis thaliana protein match is: eukaryotic initiation factor 4B2 (TAIR:AT1G13020.1); Has 19846 Blast hits to 11644 proteins in 926 species: Archae - 13; Bacteria - 5482; Metazoa - 6891; Fungi - 1262; Plants - 3241; Viruses - 222; Other Eukaryotes - 2735 (source: NCBI BLink). & (reliability: 388.0) & (original description: no original description)","protein_coding" "PSME_00008023-RA","No alias","Pseudotsuga menziesii","(at1g26260 : 101.0) Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.; cryptochrome-interacting basic-helix-loop-helix 5 (CIB5); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of flower development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G68920.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 202.0) & (original description: no original description)","protein_coding" "PSME_00008160-RA","No alias","Pseudotsuga menziesii",""(at2g46950 : 274.0) member of CYP709B; ""cytochrome P450, family 709, subfamily B, polypeptide 2"" (CYP709B2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 709, subfamily B, polypeptide 3 (TAIR:AT4G27710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q05047|c72a1_catro : 213.0) Cytochrome P450 72A1 (EC 1.3.3.9) (CYPLXXII) (Secologanin synthase) (SLS) - Catharanthus roseus (Rosy periwinkle) (Madagascar periwinkle) & (reliability: 548.0) & (original description: no original description)"","protein_coding" "PSME_00008241-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00008315-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00008338-RA","No alias","Pseudotsuga menziesii","(at2g44860 : 117.0) Ribosomal protein L24e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L24e (InterPro:IPR000988), TRASH (InterPro:IPR011017); BEST Arabidopsis thaliana protein match is: Ribosomal protein L24e family protein (TAIR:AT3G53020.1); Has 1527 Blast hits to 1527 proteins in 399 species: Archae - 307; Bacteria - 5; Metazoa - 446; Fungi - 310; Plants - 198; Viruses - 0; Other Eukaryotes - 261 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description)","protein_coding" "PSME_00008352-RA","No alias","Pseudotsuga menziesii"," (original description: no original description)","protein_coding" "PSME_00008611-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00008771-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00008819-RA","No alias","Pseudotsuga menziesii","(p52806|ycf3_pinth : 161.0) Photosystem I assembly protein ycf3 - Pinus thunbergii (Green pine) (Japanese black pine) & (atcg00360 : 138.0) Encodes a protein required for photosystem I assembly and stability. In Chlamydomonas reinhardtii, this protein seems to act as a PSI specific chaperone facilitating the assembly of the complex by interacting with PsaA and PsaD. A loss of function mutation in tobacco leads to a loss of photosystem I.; YCF3; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1). & (reliability: 276.0) & (original description: no original description)","protein_coding" "PSME_00008855-RA","No alias","Pseudotsuga menziesii","(at1g19450 : 279.0) Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G75220.1); Has 32354 Blast hits to 31683 proteins in 2302 species: Archae - 652; Bacteria - 16202; Metazoa - 5205; Fungi - 6407; Plants - 2489; Viruses - 2; Other Eukaryotes - 1397 (source: NCBI BLink). & (reliability: 558.0) & (original description: no original description)","protein_coding" "PSME_00008857-RA","No alias","Pseudotsuga menziesii","(at5g46050 : 610.0) Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies.; peptide transporter 3 (PTR3); FUNCTIONS IN: dipeptide transporter activity, tripeptide transporter activity, transporter activity; INVOLVED IN: in 12 processes; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G46040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1220.0) & (original description: no original description)","protein_coding" "PSME_00008876-RA","No alias","Pseudotsuga menziesii","(p93324|chomt_medsa : 161.0) Isoliquiritigenin 2'-O-methyltransferase (EC 2.1.1.-) (Chalcone O-methyltransferase) (ChOMT) - Medicago sativa (Alfalfa) & (at5g54160 : 160.0) A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3í-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3í-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase; O-methyltransferase 1 (OMT1); FUNCTIONS IN: myricetin 3'-O-methyltransferase activity, quercetin 3-O-methyltransferase activity, caffeate O-methyltransferase activity; INVOLVED IN: lignin biosynthetic process, flavonol biosynthetic process; LOCATED IN: cytosol, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G77520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 292.0) & (original description: no original description)","protein_coding" "PSME_00009037-RA","No alias","Pseudotsuga menziesii","(at4g27220 : 177.0) NB-ARC domain-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: NB-ARC domain-containing disease resistance protein (TAIR:AT4G27190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 354.0) & (original description: no original description)","protein_coding" "PSME_00009097-RA","No alias","Pseudotsuga menziesii","(at1g18490 : 161.0) Protein of unknown function (DUF1637); FUNCTIONS IN: cysteamine dioxygenase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1637 (InterPro:IPR012864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1637) (TAIR:AT5G39890.1); Has 360 Blast hits to 360 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 102; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). & (reliability: 322.0) & (original description: no original description)","protein_coding" "PSME_00009168-RA","No alias","Pseudotsuga menziesii","(at3g14360 : 440.0) alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G42930.1); Has 1400 Blast hits to 1392 proteins in 294 species: Archae - 0; Bacteria - 352; Metazoa - 56; Fungi - 304; Plants - 428; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink). & (reliability: 880.0) & (original description: no original description)","protein_coding" "PSME_00009360-RA","No alias","Pseudotsuga menziesii","(at1g22640 : 170.0) MYB-type transcription factor (MYB3) that represses phenylpropanoid biosynthesis gene expression; myb domain protein 3 (MYB3); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 6 (TAIR:AT4G09460.1); Has 9176 Blast hits to 8476 proteins in 489 species: Archae - 0; Bacteria - 0; Metazoa - 739; Fungi - 510; Plants - 6085; Viruses - 3; Other Eukaryotes - 1839 (source: NCBI BLink). & (p27898|mybp_maize : 165.0) Myb-related protein P - Zea mays (Maize) & (reliability: 308.0) & (original description: no original description)","protein_coding" "PSME_00009639-RA","No alias","Pseudotsuga menziesii","(at4g26000 : 120.0) Encodes a novel Arabidopsis gene encoding a polypeptide with K-homology (KH) RNA-binding modules, which acts on vegetative growth and pistil development. Genetic studies suggest that PEP interacts with element(s) of the CLAVATA signaling pathway.; PEPPER (PEP); FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: shoot development, gynoecium development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT3G04610.1); Has 2804 Blast hits to 2065 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 1818; Fungi - 225; Plants - 670; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink). & (reliability: 240.0) & (original description: no original description)","protein_coding" "PSME_00009757-RA","No alias","Pseudotsuga menziesii","(at3g13050 : 313.0) Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter4 (TAIR:AT3G20660.1); Has 38439 Blast hits to 37687 proteins in 2363 species: Archae - 738; Bacteria - 22281; Metazoa - 5017; Fungi - 6515; Plants - 2234; Viruses - 0; Other Eukaryotes - 1654 (source: NCBI BLink). & (reliability: 626.0) & (original description: no original description)","protein_coding" "PSME_00010085-RA","No alias","Pseudotsuga menziesii","(at5g67270 : 184.0) encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.; end binding protein 1C (EB1C); CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), EB1, C-terminal (InterPro:IPR004953); BEST Arabidopsis thaliana protein match is: microtubule end binding protein EB1A (TAIR:AT3G47690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 368.0) & (original description: no original description)","protein_coding" "PSME_00010121-RA","No alias","Pseudotsuga menziesii","(at2g21620 : 107.0) Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment.; RD2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to desiccation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G11930.1); Has 1098 Blast hits to 1097 proteins in 198 species: Archae - 70; Bacteria - 241; Metazoa - 121; Fungi - 60; Plants - 588; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). & (reliability: 214.0) & (original description: no original description)","protein_coding" "PSME_00010296-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00010417-RA","No alias","Pseudotsuga menziesii","(at4g02280 : 102.0) Encodes a protein with sucrose synthase activity (SUS3). It appears to be important for sucrose metabolism in developing seeds, especially during the late maturation phase, about 18 days after flowering.; sucrose synthase 3 (SUS3); CONTAINS InterPro DOMAIN/s: Sucrose synthase, plant/cyanobacteria (InterPro:IPR012820), Sucrose synthase (InterPro:IPR000368), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: sucrose synthase 2 (TAIR:AT5G49190.1); Has 6506 Blast hits to 6505 proteins in 1621 species: Archae - 256; Bacteria - 4351; Metazoa - 95; Fungi - 50; Plants - 824; Viruses - 0; Other Eukaryotes - 930 (source: NCBI BLink). & (o24301|sus2_pea : 100.0) Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 2) - Pisum sativum (Garden pea) & (reliability: 204.0) & (original description: no original description)","protein_coding" "PSME_00010451-RA","No alias","Pseudotsuga menziesii","(at5g63220 : 81.3) unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0363 (InterPro:IPR007317); Has 304 Blast hits to 301 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 121; Plants - 35; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). & (reliability: 162.6) & (original description: no original description)","protein_coding" "PSME_00010455-RA","No alias","Pseudotsuga menziesii","(at1g64390 : 187.0) glycosyl hydrolase 9C2 (GH9C2); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Carbohydrate-binding (InterPro:IPR008965), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C3 (TAIR:AT4G11050.1); Has 1850 Blast hits to 1830 proteins in 260 species: Archae - 2; Bacteria - 630; Metazoa - 187; Fungi - 17; Plants - 921; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink). & (q6l4i2|gun15_orysa : 173.0) Endoglucanase 15 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 15) - Oryza sativa (Rice) & (reliability: 374.0) & (original description: no original description)","protein_coding" "PSME_00010560-RA","No alias","Pseudotsuga menziesii","(at1g64060 : 517.0) Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site.; respiratory burst oxidase protein F (RBOH F); FUNCTIONS IN: NAD(P)H oxidase activity; INVOLVED IN: in 10 processes; LOCATED IN: plasma membrane, integral to plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: Riboflavin synthase-like superfamily protein (TAIR:AT4G11230.1); Has 2419 Blast hits to 2261 proteins in 348 species: Archae - 6; Bacteria - 265; Metazoa - 742; Fungi - 676; Plants - 525; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink). & (reliability: 1034.0) & (original description: no original description)","protein_coding" "PSME_00010630-RA","No alias","Pseudotsuga menziesii","(at5g25930 : 309.0) Protein kinase family protein with leucine-rich repeat domain; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: receptor like protein 52 (TAIR:AT5G25910.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p93194|rpk1_iponi : 148.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 618.0) & (original description: no original description)","protein_coding" "PSME_00010658-RA","No alias","Pseudotsuga menziesii","(at5g53480 : 1164.0) ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, chloroplast, nuclear pore, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G08947.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 2328.0) & (original description: no original description)","protein_coding" "PSME_00010685-RA","No alias","Pseudotsuga menziesii","(at1g56670 : 110.0) GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G09390.1); Has 3420 Blast hits to 3380 proteins in 199 species: Archae - 0; Bacteria - 256; Metazoa - 0; Fungi - 41; Plants - 3110; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). & (q7y1x1|est_hevbr : 84.3) Esterase precursor (EC 3.1.1.-) (Early nodule-specific protein homolog) (Latex allergen Hev b 13) - Hevea brasiliensis (Para rubber tree) & (reliability: 220.0) & (original description: no original description)","protein_coding" "PSME_00010939-RA","No alias","Pseudotsuga menziesii","(at1g68920 : 99.0) basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: cryptochrome-interacting basic-helix-loop-helix 5 (TAIR:AT1G26260.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 198.0) & (original description: no original description)","protein_coding" "PSME_00011075-RA","No alias","Pseudotsuga menziesii","(q05046|ch62_cucma : 883.0) Chaperonin CPN60-2, mitochondrial precursor (HSP60-2) - Cucurbita maxima (Pumpkin) (Winter squash) & (at3g23990 : 876.0) mitochondrial chaperonin HSP. assist in rapid assembly of the oligomeric protein structures in the mitochondria.; heat shock protein 60 (HSP60); FUNCTIONS IN: copper ion binding, ATP binding; INVOLVED IN: response to cadmium ion, response to cyclopentenone, chaperone-mediated protein complex assembly, response to heat, mitochondrion organization; LOCATED IN: cytosol, cytosolic ribosome, mitochondrion, plasma membrane, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: heat shock protein 60-2 (TAIR:AT2G33210.1); Has 33706 Blast hits to 33652 proteins in 8680 species: Archae - 676; Bacteria - 21745; Metazoa - 1618; Fungi - 1515; Plants - 790; Viruses - 2; Other Eukaryotes - 7360 (source: NCBI BLink). & (reliability: 1752.0) & (original description: no original description)","protein_coding" "PSME_00011184-RA","No alias","Pseudotsuga menziesii","(at1g65680 : 174.0) member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio); expansin B2 (EXPB2); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B4 (TAIR:AT2G45110.1); Has 2190 Blast hits to 2184 proteins in 158 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 26; Plants - 2110; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink). & (q6h676|exb11_orysa : 172.0) Expansin-B11 precursor (OsEXPB11) (Beta-expansin-11) (OsaEXPb1.20) - Oryza sativa (Rice) & (reliability: 348.0) & (original description: no original description)","protein_coding" "PSME_00011329-RA","No alias","Pseudotsuga menziesii","(at2g41740 : 374.0) Encodes a protein with high homology to animal villin.; villin 2 (VLN2); FUNCTIONS IN: actin binding, protein binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Gelsolin (InterPro:IPR007122), Villin headpiece (InterPro:IPR003128), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: villin 3 (TAIR:AT3G57410.1); Has 3753 Blast hits to 2353 proteins in 268 species: Archae - 0; Bacteria - 52; Metazoa - 2426; Fungi - 285; Plants - 242; Viruses - 2; Other Eukaryotes - 746 (source: NCBI BLink). & (reliability: 748.0) & (original description: no original description)","protein_coding" "PSME_00011405-RA","No alias","Pseudotsuga menziesii","(at4g37080 : 172.0) Protein of unknown function, DUF547; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G42690.2). & (reliability: 344.0) & (original description: no original description)","protein_coding" "PSME_00011466-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00011491-RA","No alias","Pseudotsuga menziesii","(at1g78600 : 217.0) light-regulated zinc finger protein 1 (LZF1); CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box zinc finger family protein (TAIR:AT1G06040.1). & (reliability: 434.0) & (original description: no original description)","protein_coding" "PSME_00011505-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00011541-RA","No alias","Pseudotsuga menziesii","(at4g12570 : 496.0) Knock-out mutants showed accelerated senescence of leaves.; ubiquitin protein ligase 5 (UPL5); CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 1 (TAIR:AT1G55860.1); Has 13201 Blast hits to 8328 proteins in 676 species: Archae - 0; Bacteria - 15; Metazoa - 6234; Fungi - 1825; Plants - 2664; Viruses - 167; Other Eukaryotes - 2296 (source: NCBI BLink). & (reliability: 992.0) & (original description: no original description)","protein_coding" "PSME_00011559-RA","No alias","Pseudotsuga menziesii","(at1g25280 : 514.0) Member of TLP family; tubby like protein 10 (TLP10); FUNCTIONS IN: phosphoric diester hydrolase activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 5 (TAIR:AT1G43640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1028.0) & (original description: no original description)","protein_coding" "PSME_00011623-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00011731-RA","No alias","Pseudotsuga menziesii","(p93508|calr_ricco : 133.0) Calreticulin precursor - Ricinus communis (Castor bean) & (at1g56340 : 128.0) Encodes one of three Arabidopsis calreticulins. In CRT-deficient mouse fibroblasts, this protein restores ER Ca2+ levels.; calreticulin 1a (CRT1a); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: response to oxidative stress, response to cadmium ion, response to salt stress, calcium ion homeostasis; LOCATED IN: mitochondrion, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Calreticulin (InterPro:IPR009169), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: calreticulin 1b (TAIR:AT1G09210.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 256.0) & (original description: no original description)","protein_coding" "PSME_00011757-RA","No alias","Pseudotsuga menziesii","(at4g30250 : 355.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G57480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 710.0) & (original description: no original description)","protein_coding" "PSME_00011787-RA","No alias","Pseudotsuga menziesii","(at1g48110 : 346.0) evolutionarily conserved C-terminal region 7 (ECT7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 6 (TAIR:AT3G17330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 692.0) & (original description: no original description)","protein_coding" "PSME_00011875-RA","No alias","Pseudotsuga menziesii","(at3g03740 : 202.0) BTB-POZ and MATH domain 4 (BPM4); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 5789 Blast hits to 5682 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 3860; Fungi - 138; Plants - 1466; Viruses - 48; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 368.0) & (original description: no original description)","protein_coding" "PSME_00011927-RA","No alias","Pseudotsuga menziesii","(at4g14360 : 823.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G23300.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1646.0) & (original description: no original description)","protein_coding" "PSME_00011936-RA","No alias","Pseudotsuga menziesii","(at4g11050 : 139.0) glycosyl hydrolase 9C3 (GH9C3); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Carbohydrate-binding (InterPro:IPR008965), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C2 (TAIR:AT1G64390.1); Has 1895 Blast hits to 1880 proteins in 271 species: Archae - 2; Bacteria - 695; Metazoa - 181; Fungi - 19; Plants - 923; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). & (q6l4i2|gun15_orysa : 107.0) Endoglucanase 15 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 15) - Oryza sativa (Rice) & (reliability: 278.0) & (original description: no original description)","protein_coding" "PSME_00011956-RA","No alias","Pseudotsuga menziesii","(at5g08370 : 308.0) alpha-galactosidase 2 (AGAL2); FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: positive regulation of flower development, leaf morphogenesis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, family 27 (InterPro:IPR002241), Glycoside hydrolase, clan GH-D (InterPro:IPR000111), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: alpha-galactosidase 1 (TAIR:AT5G08380.1); Has 1586 Blast hits to 1573 proteins in 339 species: Archae - 4; Bacteria - 587; Metazoa - 332; Fungi - 271; Plants - 223; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink). & (q9fxt4|agal_orysa : 305.0) Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase) (Alpha-D-galactoside galactohydrolase) - Oryza sativa (Rice) & (reliability: 616.0) & (original description: no original description)","protein_coding" "PSME_00012000-RA","No alias","Pseudotsuga menziesii","(p51108|dfra_maize : 262.0) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR) (Dihydrokaempferol 4-reductase) - Zea mays (Maize) & (at4g35420 : 252.0) Encodes DRL1 (Dihydroflavonol 4-reductase-like1), a closely related homolog of the rice anther-specific gene OsDFR2. DRL1 may be involved in a metabolic pathway essential for pollen wall development and male fertility. Mutant plants have impaired pollen formation and seed production.; dihydroflavonol 4-reductase-like1 (DRL1); FUNCTIONS IN: coenzyme binding, binding, catalytic activity; INVOLVED IN: seed development, pollen development; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, hypocotyl, sepal, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G68540.1); Has 11019 Blast hits to 11006 proteins in 1795 species: Archae - 197; Bacteria - 4697; Metazoa - 293; Fungi - 927; Plants - 2536; Viruses - 49; Other Eukaryotes - 2320 (source: NCBI BLink). & (reliability: 504.0) & (original description: no original description)","protein_coding" "PSME_00012011-RA","No alias","Pseudotsuga menziesii","(at4g36850 : 254.0) PQ-loop repeat family protein / transmembrane family protein; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603); BEST Arabidopsis thaliana protein match is: PQ-loop repeat family protein / transmembrane family protein (TAIR:AT2G41050.1); Has 883 Blast hits to 635 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 204; Fungi - 499; Plants - 92; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink). & (reliability: 508.0) & (original description: no original description)","protein_coding" "PSME_00012235-RA","No alias","Pseudotsuga menziesii","(q9slx0|ima1b_orysa : 175.0) Importin alpha-1b subunit - Oryza sativa (Rice) & (at3g06720 : 169.0) Encodes importin alpha involved in nuclear import.; AT-IMP; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: cytosol, nuclear envelope, nucleolus, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding domain (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 2 (TAIR:AT4G16143.2); Has 4059 Blast hits to 2974 proteins in 281 species: Archae - 4; Bacteria - 22; Metazoa - 1537; Fungi - 665; Plants - 1109; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink). & (reliability: 338.0) & (original description: no original description)","protein_coding" "PSME_00012258-RA","No alias","Pseudotsuga menziesii","(at1g69040 : 329.0) ACT-domain containing protein involved in feedback regulation of amino acid metabolism; ACT domain repeat 4 (ACR4); FUNCTIONS IN: amino acid binding; INVOLVED IN: regulation of cellular amino acid metabolic process, response to cytokinin stimulus; LOCATED IN: cytosol; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid-binding ACT (InterPro:IPR002912); BEST Arabidopsis thaliana protein match is: ACT domain repeat 5 (TAIR:AT2G03730.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 658.0) & (original description: no original description)","protein_coding" "PSME_00012279-RA","No alias","Pseudotsuga menziesii","(at2g41050 : 164.0) PQ-loop repeat family protein / transmembrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603); BEST Arabidopsis thaliana protein match is: PQ-loop repeat family protein / transmembrane family protein (TAIR:AT4G36850.1); Has 930 Blast hits to 673 proteins in 160 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 545; Plants - 89; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink). & (reliability: 328.0) & (original description: no original description)","protein_coding" "PSME_00012298-RA","No alias","Pseudotsuga menziesii","(at2g31260 : 823.0) Involved in autophagy, the process of vacuolar bulk degradation of cytoplasmic components. Mutant shows accelerated bolting and senescence.; autophagy 9 (APG9); CONTAINS InterPro DOMAIN/s: Autophagy-related protein 9 (InterPro:IPR007241); Has 489 Blast hits to 477 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 214; Fungi - 166; Plants - 51; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). & (reliability: 1646.0) & (original description: no original description)","protein_coding" "PSME_00012312-RA","No alias","Pseudotsuga menziesii","(p93665|dcs1_goshi : 216.0) (+)-delta-cadinene synthase (EC 4.2.3.13) (D-cadinene synthase) - Gossypium hirsutum (Upland cotton) & (at4g16740 : 209.0) Encodes an (E,E)-alpha-farnesene synthase in the Col ecotype of Arabidopsis. This enzyme can also catalyze the formation of (E)-beta-ocimene as well as trace amounts of myrcene and other related compounds in vitro. The cytosolic localization of the protein may make it favor (E,E)-alpha-farnesene biosynthesis because the precursor of this product, FPP, is primarily cytosolic. Transcript levels for this gene increase in response to treatment with the jasmonic acid mimic coronalon or in response to the insect Plutella xylostella. TPS03 transcripts can also be detected in flowers. A similar protein from the C24 ecotype with one amino acid change (S267F) has a different substrate specificity.; terpene synthase 03 (TPS03); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase-like sequence-1,8-cineole (TAIR:AT3G25820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 418.0) & (original description: no original description)","protein_coding" "PSME_00012387-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00012432-RA","No alias","Pseudotsuga menziesii"," (original description: no original description)","protein_coding" "PSME_00012439-RA","No alias","Pseudotsuga menziesii","(at1g22380 : 125.0) Encodes a putative UDP-glucosyl transferase. At1g22380 was initially identified as encoding the protein AAF87154, which has been classified as a bHLH protein (AtbHLH152). Subsequently it has been found that the AAF87154 protein appears to be encoded by the AT1G23970 genomic locus.; UDP-glucosyl transferase 85A3 (UGT85A3); FUNCTIONS IN: transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G22400.1); Has 7656 Blast hits to 7558 proteins in 363 species: Archae - 0; Bacteria - 87; Metazoa - 2193; Fungi - 26; Plants - 5186; Viruses - 99; Other Eukaryotes - 65 (source: NCBI BLink). & (p31927|sps_maize : 81.3) Sucrose-phosphate synthase (EC 2.4.1.14) (UDP-glucose-fructose-phosphate glucosyltransferase) - Zea mays (Maize) & (reliability: 230.0) & (original description: no original description)","protein_coding" "PSME_00012446-RA","No alias","Pseudotsuga menziesii","(at3g57870 : 297.0) Encodes a SUMO liagse that directs the attachment of the small protein SUMO to target proteins via an isopeptide bond. This enzyme is localized to the nucleus and plants with reduced levels of this protein show higher sensitivity to ABA in root growth inhibition assays. It has high similarity to the yeast UBC9 SUMO ligase and is sometimes referred to by that name.; sumo conjugation enzyme 1 (SCE1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1); Has 9584 Blast hits to 9566 proteins in 388 species: Archae - 0; Bacteria - 0; Metazoa - 4206; Fungi - 2037; Plants - 1834; Viruses - 20; Other Eukaryotes - 1487 (source: NCBI BLink). & (p35130|ubc2_medsa : 124.0) Ubiquitin-conjugating enzyme E2-17 kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) - Medicago sativa (Alfalfa) & (reliability: 594.0) & (original description: no original description)","protein_coding" "PSME_00012547-RA","No alias","Pseudotsuga menziesii","(at5g02370 : 235.0) ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, DNA binding, ATP binding; INVOLVED IN: DNA repair, microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT5G23910.1); Has 10070 Blast hits to 9659 proteins in 326 species: Archae - 0; Bacteria - 33; Metazoa - 4508; Fungi - 1335; Plants - 1813; Viruses - 0; Other Eukaryotes - 2381 (source: NCBI BLink). & (p46869|fla10_chlre : 105.0) Kinesin-like protein FLA10 (Protein KHP1) - Chlamydomonas reinhardtii & (reliability: 470.0) & (original description: no original description)","protein_coding" "PSME_00012551-RA","No alias","Pseudotsuga menziesii","(at1g70520 : 353.0) Encodes a cysteine-rich receptor-like protein kinase.; cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (CRK2); FUNCTIONS IN: kinase activity; INVOLVED IN: response to ozone; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (TAIR:AT5G40380.1); Has 123193 Blast hits to 121713 proteins in 4855 species: Archae - 110; Bacteria - 13886; Metazoa - 45515; Fungi - 10581; Plants - 34413; Viruses - 473; Other Eukaryotes - 18215 (source: NCBI BLink). & (q8l4h4|nork_medtr : 207.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 706.0) & (original description: no original description)","protein_coding" "PSME_00012779-RA","No alias","Pseudotsuga menziesii","(at2g25760 : 1054.0) Protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT3G13670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 2108.0) & (original description: no original description)","protein_coding" "PSME_00012819-RA","No alias","Pseudotsuga menziesii","(at5g20190 : 134.0) Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G80130.1); Has 458 Blast hits to 304 proteins in 39 species: Archae - 0; Bacteria - 85; Metazoa - 7; Fungi - 10; Plants - 317; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). & (reliability: 268.0) & (original description: no original description)","protein_coding" "PSME_00012945-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00012965-RA","No alias","Pseudotsuga menziesii","(at5g13000 : 266.0) encodes a gene similar to callose synthase; glucan synthase-like 12 (GSL12); FUNCTIONS IN: transferase activity, transferring glycosyl groups, 1,3-beta-glucan synthase activity; INVOLVED IN: 1,3-beta-glucan biosynthetic process; LOCATED IN: 1,3-beta-glucan synthase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 48 (InterPro:IPR003440), Protein of unknown function DUF605 (InterPro:IPR006745); BEST Arabidopsis thaliana protein match is: callose synthase 1 (TAIR:AT1G05570.1); Has 1373 Blast hits to 1031 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 677; Plants - 549; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). & (p40603|apg_brana : 103.0) Anter-specific proline-rich protein APG (Protein CEX) (Fragment) - Brassica napus (Rape) & (reliability: 532.0) & (original description: no original description)","protein_coding" "PSME_00012979-RA","No alias","Pseudotsuga menziesii","(q6yuu5|mdr_orysa : 541.0) Putative multidrug resistance protein (P-glycoprotein) - Oryza sativa (Rice) & (at3g28345 : 523.0) ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: shoot apex, inflorescence meristem, cotyledon, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 17 (TAIR:AT3G28380.1); Has 822177 Blast hits to 385706 proteins in 4160 species: Archae - 14477; Bacteria - 641696; Metazoa - 17642; Fungi - 12086; Plants - 9535; Viruses - 48; Other Eukaryotes - 126693 (source: NCBI BLink). & (reliability: 1046.0) & (original description: no original description)","protein_coding" "PSME_00012980-RA","No alias","Pseudotsuga menziesii","(at4g37080 : 234.0) Protein of unknown function, DUF547; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G42690.2). & (reliability: 468.0) & (original description: no original description)","protein_coding" "PSME_00012992-RA","No alias","Pseudotsuga menziesii","(p41640|psab_pinth : 296.0) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB) (PSI-B) - Pinus thunbergii (Green pine) (Japanese black pine) & (atcg00340 : 284.0) Encodes the D1 subunit of photosystem I and II reaction centers.; PSAB; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem II, photosynthesis, light harvesting in photosystem I; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I psaB (InterPro:IPR006244), Photosystem I, PsaA/PsaB (InterPro:IPR001280), Photosystem I psaA/psaB, conserved site (InterPro:IPR020586); BEST Arabidopsis thaliana protein match is: Photosystem I, PsaA/PsaB protein (TAIR:ATCG00350.1). & (reliability: 568.0) & (original description: no original description)","protein_coding" "PSME_00012994-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00013087-RA","No alias","Pseudotsuga menziesii","(at1g04770 : 187.0) Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G48850.1); Has 226 Blast hits to 224 proteins in 29 species: Archae - 0; Bacteria - 22; Metazoa - 1; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). & (reliability: 374.0) & (original description: no original description)","protein_coding" "PSME_00013285-RA","No alias","Pseudotsuga menziesii","(at5g46330 : 181.0) Encodes a leucine-rich repeat serine/threonine protein kinase that is expressed ubiquitously. FLS2 is involved in MAP kinase signalling relay involved in innate immunity. Essential in the perception of flagellin, a potent elicitor of the defense response. FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB.; FLAGELLIN-SENSITIVE 2 (FLS2); FUNCTIONS IN: protein serine/threonine kinase activity, transmembrane receptor protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT4G20140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p93194|rpk1_iponi : 144.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 330.0) & (original description: no original description)","protein_coding" "PSME_00013381-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00013390-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00013476-RA","No alias","Pseudotsuga menziesii","(at5g01320 : 117.0) Thiamine pyrophosphate dependent pyruvate decarboxylase family protein; FUNCTIONS IN: in 6 functions; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TPP-binding enzyme, conserved site (InterPro:IPR000399), Thiamine pyrophosphate enzyme, central domain (InterPro:IPR012000), Pyruvate decarboxylase/indolepyruvate decarboxylase (InterPro:IPR012110), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766); BEST Arabidopsis thaliana protein match is: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein (TAIR:AT4G33070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p51848|pdc2_orysa : 114.0) Pyruvate decarboxylase isozyme 2 (EC 4.1.1.1) (PDC) - Oryza sativa (Rice) & (reliability: 234.0) & (original description: no original description)","protein_coding" "PSME_00013537-RA","No alias","Pseudotsuga menziesii","(at1g28440 : 103.0) HAESA-like 1 (HSL1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT4G28490.1); Has 214855 Blast hits to 132793 proteins in 4138 species: Archae - 139; Bacteria - 23060; Metazoa - 65756; Fungi - 10225; Plants - 90032; Viruses - 401; Other Eukaryotes - 25242 (source: NCBI BLink). & (reliability: 206.0) & (original description: no original description)","protein_coding" "PSME_00013545-RA","No alias","Pseudotsuga menziesii","(q42698|ggpps_catro : 128.0) Geranylgeranyl pyrophosphate synthetase, chloroplast precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] - Catharanthu & (at4g36810 : 125.0) Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots.; geranylgeranyl pyrophosphate synthase 1 (GGPS1); FUNCTIONS IN: farnesyltranstransferase activity; INVOLVED IN: isoprenoid biosynthetic process; LOCATED IN: etioplast, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: Terpenoid synthases superfamily protein (TAIR:AT2G18620.1); Has 16617 Blast hits to 16612 proteins in 2936 species: Archae - 341; Bacteria - 9385; Metazoa - 291; Fungi - 423; Plants - 452; Viruses - 12; Other Eukaryotes - 5713 (source: NCBI BLink). & (reliability: 230.0) & (original description: no original description)","protein_coding" "PSME_00013617-RA","No alias","Pseudotsuga menziesii","(at1g20920 : 1026.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G09620.1); Has 45185 Blast hits to 44279 proteins in 3076 species: Archae - 794; Bacteria - 22443; Metazoa - 6674; Fungi - 4936; Plants - 2699; Viruses - 11; Other Eukaryotes - 7628 (source: NCBI BLink). & (p46942|db10_nicsy : 304.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 2052.0) & (original description: no original description)","protein_coding" "PSME_00013848-RA","No alias","Pseudotsuga menziesii","(at5g42190 : 187.0) Similar to SKP1 in yeast and humans which are involved in mitotic cell cycle control and ubiquitin mediated proteolysis.; E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: S phase kinase-associated protein 1 (TAIR:AT1G75950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 374.0) & (original description: no original description)","protein_coding" "PSME_00013850-RA","No alias","Pseudotsuga menziesii","(at1g75950 : 90.5) SKP1 is core component of the SCF family of E3 ubiquitin ligases and serves to tether the rest of the complex to an F-box protein, which provides specificity in binding to ubiquitin ligase substrate proteins. Predominately expressed from leptotene to pachytene. Negatively regulates recombination. Interacts with P0, a silencing suppressor protein encoded by poleroviruses by means of a conserved minimal F-box motif.; S phase kinase-associated protein 1 (SKP1); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: negative regulation of DNA recombination, response to cadmium ion, mitosis, male meiosis, ubiquitin-dependent protein catabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 35 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (TAIR:AT5G42190.1); Has 1455 Blast hits to 1451 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 552; Fungi - 179; Plants - 538; Viruses - 11; Other Eukaryotes - 175 (source: NCBI BLink). & (reliability: 181.0) & (original description: no original description)","protein_coding" "PSME_00013908-RA","No alias","Pseudotsuga menziesii","(at2g23350 : 229.0) polyadenylate-binding protein, putative / PABP, putative.Member of the Class II family of PABP proteins. Highly and ubiquitously expressed.; poly(A) binding protein 4 (PAB4); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 2 (TAIR:AT4G34110.1); Has 520413 Blast hits to 486687 proteins in 21592 species: Archae - 10501; Bacteria - 294432; Metazoa - 110769; Fungi - 17969; Plants - 36260; Viruses - 34479; Other Eukaryotes - 16003 (source: NCBI BLink). & (reliability: 458.0) & (original description: no original description)","protein_coding" "PSME_00014319-RA","No alias","Pseudotsuga menziesii","(at5g46040 : 619.0) Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 3 (TAIR:AT5G46050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1238.0) & (original description: no original description)","protein_coding" "PSME_00014388-RA","No alias","Pseudotsuga menziesii","(at3g48090 : 135.0) Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases.; enhanced disease susceptibility 1 (EDS1); CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G48080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 256.0) & (original description: no original description)","protein_coding" "PSME_00014550-RA","No alias","Pseudotsuga menziesii","(at5g26340 : 734.0) Encodes a protein with high affinity, hexose-specific/H+ symporter activity. The activity of the transporter appears to be negatively regulated by phosphorylation. Importantly, microarray analysis, as well as the study of the expression of this gene in mutants involved in programmed cell death (PCD) demonstrated a tight correlation between this gene's expression and PCD.; MSS1; FUNCTIONS IN: carbohydrate transmembrane transporter activity, high-affinity hydrogen:glucose symporter activity, sugar:hydrogen symporter activity, hexose:hydrogen symporter activity; INVOLVED IN: response to salt stress, apoptosis, phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sugar transporter protein 7 (TAIR:AT4G02050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q10710|sta_ricco : 573.0) Sugar carrier protein A - Ricinus communis (Castor bean) & (reliability: 1468.0) & (original description: no original description)","protein_coding" "PSME_00014641-RA","No alias","Pseudotsuga menziesii","(q71vm4|ima1a_orysa : 415.0) Importin alpha-1a subunit - Oryza sativa (Rice) & (at3g06720 : 407.0) Encodes importin alpha involved in nuclear import.; AT-IMP; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: cytosol, nuclear envelope, nucleolus, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding domain (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 2 (TAIR:AT4G16143.2); Has 4059 Blast hits to 2974 proteins in 281 species: Archae - 4; Bacteria - 22; Metazoa - 1537; Fungi - 665; Plants - 1109; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink). & (reliability: 814.0) & (original description: no original description)","protein_coding" "PSME_00014760-RA","No alias","Pseudotsuga menziesii","(at2g29200 : 721.0) Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.; pumilio 1 (PUM1); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940), Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 3 (TAIR:AT2G29140.1); Has 3905 Blast hits to 1986 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 808; Fungi - 1312; Plants - 896; Viruses - 0; Other Eukaryotes - 889 (source: NCBI BLink). & (reliability: 1442.0) & (original description: no original description)","protein_coding" "PSME_00014771-RA","No alias","Pseudotsuga menziesii","(at3g01410 : 108.0) Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease H activity, nuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H family protein (TAIR:AT1G24090.1); Has 3179 Blast hits to 3179 proteins in 588 species: Archae - 77; Bacteria - 1109; Metazoa - 13; Fungi - 0; Plants - 1505; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink). & (reliability: 198.8) & (original description: no original description)","protein_coding" "PSME_00014838-RA","No alias","Pseudotsuga menziesii","(at3g12720 : 234.0) Member of the R2R3 factor gene family.; myb domain protein 67 (MYB67); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 50 (TAIR:AT1G57560.1); Has 8912 Blast hits to 8278 proteins in 476 species: Archae - 0; Bacteria - 2; Metazoa - 680; Fungi - 532; Plants - 5859; Viruses - 3; Other Eukaryotes - 1836 (source: NCBI BLink). & (p20027|myb3_horvu : 199.0) Myb-related protein Hv33 - Hordeum vulgare (Barley) & (reliability: 468.0) & (original description: no original description)","protein_coding" "PSME_00014866-RA","No alias","Pseudotsuga menziesii","(at2g21940 : 83.2) shikimate kinase 1 (SK1); FUNCTIONS IN: shikimate kinase activity, ATP binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase 2 (TAIR:AT4G39540.2); Has 7831 Blast hits to 7831 proteins in 2412 species: Archae - 26; Bacteria - 5482; Metazoa - 44; Fungi - 134; Plants - 162; Viruses - 0; Other Eukaryotes - 1983 (source: NCBI BLink). & (reliability: 166.4) & (original description: no original description)","protein_coding" "PSME_00015119-RA","No alias","Pseudotsuga menziesii","(at4g22130 : 262.0) STRUBBELIG-receptor family 8 (SRF8); FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 6 (TAIR:AT1G53730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q8l4h4|nork_medtr : 110.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 524.0) & (original description: no original description)","protein_coding" "PSME_00015232-RA","No alias","Pseudotsuga menziesii","(at5g35570 : 276.0) O-fucosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT2G37980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 552.0) & (original description: no original description)","protein_coding" "PSME_00015363-RA","No alias","Pseudotsuga menziesii","(at3g60550 : 202.0) cyclin p3;2 (CYCP3;2); CONTAINS InterPro DOMAIN/s: Negative regulatory factor PREG (InterPro:IPR012389), Cyclin-like (InterPro:IPR011028), Cyclin-related 2 (InterPro:IPR013922); BEST Arabidopsis thaliana protein match is: cyclin p3;1 (TAIR:AT2G45080.1); Has 1360 Blast hits to 1354 proteins in 218 species: Archae - 0; Bacteria - 18; Metazoa - 236; Fungi - 630; Plants - 217; Viruses - 0; Other Eukaryotes - 259 (source: NCBI BLink). & (reliability: 404.0) & (original description: no original description)","protein_coding" "PSME_00015458-RA","No alias","Pseudotsuga menziesii","(at4g10500 : 256.0) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: secondary metabolic process; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G10490.1); Has 8560 Blast hits to 8509 proteins in 1005 species: Archae - 0; Bacteria - 1116; Metazoa - 115; Fungi - 958; Plants - 4983; Viruses - 0; Other Eukaryotes - 1388 (source: NCBI BLink). & (q06942|fl3h_maldo : 162.0) Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9) (Flavonone-3-hydroxylase) (F3H) (FHT) - Malus domestica (Apple) (Malus sylvestris) & (reliability: 496.0) & (original description: no original description)","protein_coding" "PSME_00015508-RA","No alias","Pseudotsuga menziesii","(at4g38640 : 259.0) Plasma-membrane choline transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 518.0) & (original description: no original description)","protein_coding" "PSME_00015534-RA","No alias","Pseudotsuga menziesii","(at5g53540 : 258.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G27680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p54774|cdc48_soybn : 89.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 488.0) & (original description: no original description)","protein_coding" "PSME_00015696-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00015726-RA","No alias","Pseudotsuga menziesii","(o24301|sus2_pea : 87.0) Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 2) - Pisum sativum (Garden pea) & (at5g49190 : 85.5) Encodes a sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). However, analyses of an sus2 mutant revealed a deficiency in sucrose synthase activity 12 and 15 days after flowering. There are some reports that SUS2 transcript levels are increased in leaves specifically by O(2) deficiency whereas other reports indicate that SUS2 is expressed only in seeds. Immulocalization shows that SUS2 is present in the cytosol of developing seeds, but, it also associated with plastids, though not located within them.; sucrose synthase 2 (SUS2); FUNCTIONS IN: UDP-glycosyltransferase activity, sucrose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: sucrose biosynthetic process, seed maturation, response to hypoxia, sucrose metabolic process, starch metabolic process; LOCATED IN: cytosol, plastid, membrane, plant-type cell wall; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Sucrose synthase, plant/cyanobacteria (InterPro:IPR012820), Sucrose synthase (InterPro:IPR000368), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: sucrose synthase 3 (TAIR:AT4G02280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 171.0) & (original description: no original description)","protein_coding" "PSME_00015738-RA","No alias","Pseudotsuga menziesii","(at3g54290 : 159.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haemerythrin/HHE cation-binding motif (InterPro:IPR012312); Has 59 Blast hits to 59 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 318.0) & (original description: no original description)","protein_coding" "PSME_00015764-RA","No alias","Pseudotsuga menziesii","(at2g25110 : 84.7) Encodes an endoplasmic reticulum protein SDF2 (stromal-derived factor-2). Forms a complex SDF2-ERdj3B-BiP that is required for the proper accumulation of the surface-exposed leucine-rich repeat receptor kinases EFR. EFR is involved in PAMP (pathogen associated molecular patterns) triggered immunity.; stromal cell-derived factor 2-like protein precursor (SDF2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to bacterium, defense response to fungus, PAMP-induced immunity; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MIR (InterPro:IPR003608), MIR motif (InterPro:IPR016093); Has 1035 Blast hits to 992 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 386; Fungi - 512; Plants - 64; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink). & (reliability: 169.4) & (original description: no original description)","protein_coding" "PSME_00015777-RA","No alias","Pseudotsuga menziesii","(at5g55300 : 169.0) Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. Functions in stem cell maintenance at all stages of shoot and floral meristems and in the regulation of gene silencing.; DNA topoisomerase I alpha (TOP1ALPHA); FUNCTIONS IN: protein binding, DNA topoisomerase type I activity; INVOLVED IN: in 8 processes; LOCATED IN: chromosome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499); BEST Arabidopsis thaliana protein match is: DNA topoisomerase 1 beta (TAIR:AT5G55310.1). & (p93119|top1_dauca : 148.0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) - Daucus carota (Carrot) & (reliability: 338.0) & (original description: no original description)","protein_coding" "PSME_00015793-RA","No alias","Pseudotsuga menziesii","(at5g55300 : 762.0) Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. Functions in stem cell maintenance at all stages of shoot and floral meristems and in the regulation of gene silencing.; DNA topoisomerase I alpha (TOP1ALPHA); FUNCTIONS IN: protein binding, DNA topoisomerase type I activity; INVOLVED IN: in 8 processes; LOCATED IN: chromosome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499); BEST Arabidopsis thaliana protein match is: DNA topoisomerase 1 beta (TAIR:AT5G55310.1). & (p93119|top1_dauca : 656.0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) - Daucus carota (Carrot) & (reliability: 1524.0) & (original description: no original description)","protein_coding" "PSME_00015838-RA","No alias","Pseudotsuga menziesii","(at5g59520 : 313.0) encodes a metal ion transporter whose expression is regulated by copper.; ZRT/IRT-like protein 2 (ZIP2); FUNCTIONS IN: copper ion transmembrane transporter activity, zinc ion transmembrane transporter activity, transferase activity, transferring glycosyl groups; INVOLVED IN: zinc ion transport, response to copper ion; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: zinc transporter 11 precursor (TAIR:AT1G55910.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 626.0) & (original description: no original description)","protein_coding" "PSME_00015915-RA","No alias","Pseudotsuga menziesii","(at3g51430 : 189.0) Although this enzyme is predicted to encode a strictosidine synthase (SS), it lacks a conserved catalytic glutamate residue found in active SS enzymes and it is not expected to have SS activity.; YELLOW-LEAF-SPECIFIC GENE 2 (YLS2); CONTAINS InterPro DOMAIN/s: Strictosidine synthase (InterPro:IPR004141), Strictosidine synthase, conserved region (InterPro:IPR018119), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT3G51440.1). & (reliability: 378.0) & (original description: no original description)","protein_coding" "PSME_00016089-RA","No alias","Pseudotsuga menziesii","(at4g26790 : 126.0) GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT2G42990.1); Has 3601 Blast hits to 3560 proteins in 263 species: Archae - 0; Bacteria - 426; Metazoa - 0; Fungi - 31; Plants - 3127; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). & (p40603|apg_brana : 89.0) Anter-specific proline-rich protein APG (Protein CEX) (Fragment) - Brassica napus (Rape) & (reliability: 252.0) & (original description: no original description)","protein_coding" "PSME_00016099-RA","No alias","Pseudotsuga menziesii","(at2g05920 : 474.0) Subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT5G67360.1); Has 7371 Blast hits to 6472 proteins in 1023 species: Archae - 222; Bacteria - 3849; Metazoa - 147; Fungi - 727; Plants - 1890; Viruses - 0; Other Eukaryotes - 536 (source: NCBI BLink). & (reliability: 948.0) & (original description: no original description)","protein_coding" "PSME_00016291-RA","No alias","Pseudotsuga menziesii","(at5g40820 : 122.0) Encodes a Arabidopsis ortholog of the ATR protein kinase that is involved in a wide range of responses to DNA damage and plays a central role in cell-cycle regulation. Dominant loss of function alleles identified as suppressors of ALS also exhibit increased tolerance to aluminum. This may be due to the inhibition of terminal differentiation of the root apex upon exposure to Al.; Ataxia telangiectasia-mutated and RAD3-related (ATR); FUNCTIONS IN: protein serine/threonine kinase activity, inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: in 9 processes; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403), UME (InterPro:IPR012993), Protein kinase-like domain (InterPro:IPR011009), PIK-related kinase, FAT (InterPro:IPR003151), Armadillo-type fold (InterPro:IPR016024), PIK-related kinase (InterPro:IPR014009), Phosphatidylinositol 3/4-kinase, conserved site (InterPro:IPR018936), PIK-related kinase, FATC (InterPro:IPR003152); BEST Arabidopsis thaliana protein match is: ataxia-telangiectasia mutated (TAIR:AT3G48190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q5z987|atr_orysa : 116.0) Serine/threonine-protein kinase ATR (EC 2.7.11.1) - Oryza sativa (Rice) & (reliability: 244.0) & (original description: no original description)","protein_coding" "PSME_00016446-RA","No alias","Pseudotsuga menziesii","(at3g02100 : 266.0) UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G05675.1); Has 7982 Blast hits to 7880 proteins in 431 species: Archae - 0; Bacteria - 322; Metazoa - 2378; Fungi - 47; Plants - 5098; Viruses - 73; Other Eukaryotes - 64 (source: NCBI BLink). & (q41819|iaag_maize : 172.0) Indole-3-acetate beta-glucosyltransferase (EC 2.4.1.121) (IAA-Glu synthetase) ((Uridine 5'-diphosphate-glucose:indol-3-ylacetyl)-beta-D-glucosyl transferase) - Zea mays (Maize) & (reliability: 484.0) & (original description: no original description)","protein_coding" "PSME_00016747-RA","No alias","Pseudotsuga menziesii","(at5g16750 : 165.0) Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development.; TORMOZEMBRYO DEFECTIVE (TOZ); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Small-subunit processome, Utp13 (InterPro:IPR013934), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 153281 Blast hits to 38108 proteins in 953 species: Archae - 96; Bacteria - 13855; Metazoa - 64321; Fungi - 32637; Plants - 21715; Viruses - 0; Other Eukaryotes - 20657 (source: NCBI BLink). & (reliability: 330.0) & (original description: no original description)","protein_coding" "PSME_00016857-RA","No alias","Pseudotsuga menziesii","(at1g56145 : 382.0) Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Malectin/receptor-like protein kinase (InterPro:IPR021720), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G56130.1). & (q8l4h4|nork_medtr : 145.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 764.0) & (original description: no original description)","protein_coding" "PSME_00016873-RA","No alias","Pseudotsuga menziesii","(at3g54450 : 232.0) Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G72125.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 464.0) & (original description: no original description)","protein_coding" "PSME_00016897-RA","No alias","Pseudotsuga menziesii","(at5g55300 : 100.0) Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. Functions in stem cell maintenance at all stages of shoot and floral meristems and in the regulation of gene silencing.; DNA topoisomerase I alpha (TOP1ALPHA); FUNCTIONS IN: protein binding, DNA topoisomerase type I activity; INVOLVED IN: in 8 processes; LOCATED IN: chromosome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499); BEST Arabidopsis thaliana protein match is: DNA topoisomerase 1 beta (TAIR:AT5G55310.1). & (p93119|top1_dauca : 95.9) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) - Daucus carota (Carrot) & (reliability: 200.0) & (original description: no original description)","protein_coding" "PSME_00017047-RA","No alias","Pseudotsuga menziesii","(at3g06720 : 431.0) Encodes importin alpha involved in nuclear import.; AT-IMP; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: cytosol, nuclear envelope, nucleolus, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding domain (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 2 (TAIR:AT4G16143.2); Has 4059 Blast hits to 2974 proteins in 281 species: Archae - 4; Bacteria - 22; Metazoa - 1537; Fungi - 665; Plants - 1109; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink). & (q71vm4|ima1a_orysa : 430.0) Importin alpha-1a subunit - Oryza sativa (Rice) & (reliability: 862.0) & (original description: no original description)","protein_coding" "PSME_00017053-RA","No alias","Pseudotsuga menziesii","(at1g01720 : 241.0) Belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding and abscisic acid. ATAF1 attentuates ABA signaling and sythesis. Mutants are hyposensitive to ABA.; ATAF1; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 32 (TAIR:AT1G77450.1); Has 3043 Blast hits to 3037 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3043; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (q7f2l3|nac48_orysa : 241.0) NAC domain-containing protein 48 (ONAC048) - Oryza sativa (Rice) & (reliability: 442.0) & (original description: no original description)","protein_coding" "PSME_00017126-RA","No alias","Pseudotsuga menziesii","(at2g36480 : 211.0) ENTH/VHS family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), RNA polymerase II, large subunit, CTD (InterPro:IPR006569), Zinc finger, C2H2-type (InterPro:IPR007087), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: PCF11P-similar protein 4 (TAIR:AT4G04885.1); Has 1695 Blast hits to 821 proteins in 229 species: Archae - 0; Bacteria - 223; Metazoa - 395; Fungi - 309; Plants - 134; Viruses - 0; Other Eukaryotes - 634 (source: NCBI BLink). & (reliability: 422.0) & (original description: no original description)","protein_coding" "PSME_00017294-RA","No alias","Pseudotsuga menziesii","(at4g02780 : 138.0) Catalyzes the conversion of geranylgeranyl pyrophosphate (GGPP) to copalyl pyrophosphate (CPP) of gibberellin biosynthesis; GA REQUIRING 1 (GA1); CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT1G79460.1); Has 1979 Blast hits to 1971 proteins in 256 species: Archae - 0; Bacteria - 97; Metazoa - 0; Fungi - 61; Plants - 1817; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (o04408|ksa_pea : 136.0) Ent-kaurene synthase A, chloroplast precursor (EC 5.5.1.13) (Ent-copalyl diphosphate synthase) (KSA) - Pisum sativum (Garden pea) & (reliability: 276.0) & (original description: no original description)","protein_coding" "PSME_00017385-RA","No alias","Pseudotsuga menziesii","(at5g60760 : 250.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G45090.1); Has 1216 Blast hits to 969 proteins in 195 species: Archae - 93; Bacteria - 85; Metazoa - 220; Fungi - 67; Plants - 127; Viruses - 43; Other Eukaryotes - 581 (source: NCBI BLink). & (reliability: 498.0) & (original description: no original description)","protein_coding" "PSME_00017403-RA","No alias","Pseudotsuga menziesii",""(at2g45570 : 249.0) member of CYP76C; ""cytochrome P450, family 76, subfamily C, polypeptide 2"" (CYP76C2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: stem, sepal, male gametophyte, carpel, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 76, subfamily C, polypeptide 4 (TAIR:AT2G45550.1); Has 34313 Blast hits to 34043 proteins in 1718 species: Archae - 48; Bacteria - 4021; Metazoa - 12101; Fungi - 7308; Plants - 9587; Viruses - 3; Other Eukaryotes - 1245 (source: NCBI BLink). & (p48418|c75a1_pethy : 239.0) Flavonoid 3',5'-hydroxylase 1 (EC 1.14.13.88) (F3'5'H) (Cytochrome P450 75A1) (CYPLXXVA1) - Petunia hybrida (Petunia) & (reliability: 498.0) & (original description: no original description)"","protein_coding" "PSME_00017534-RA","No alias","Pseudotsuga menziesii","(at3g01015 : 128.0) TPX2 (targeting protein for Xklp2) protein family; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT5G15510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 256.0) & (original description: no original description)","protein_coding" "PSME_00017538-RA","No alias","Pseudotsuga menziesii","(at5g47500 : 145.0) Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G19730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q42920|pme_medsa : 81.3) Pectinesterase precursor (EC 3.1.1.11) (Pectin methylesterase) (PE) (P65) - Medicago sativa (Alfalfa) & (reliability: 290.0) & (original description: no original description)","protein_coding" "PSME_00017567-RA","No alias","Pseudotsuga menziesii","(q9slx0|ima1b_orysa : 457.0) Importin alpha-1b subunit - Oryza sativa (Rice) & (at3g06720 : 448.0) Encodes importin alpha involved in nuclear import.; AT-IMP; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: cytosol, nuclear envelope, nucleolus, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding domain (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 2 (TAIR:AT4G16143.2); Has 4059 Blast hits to 2974 proteins in 281 species: Archae - 4; Bacteria - 22; Metazoa - 1537; Fungi - 665; Plants - 1109; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink). & (reliability: 896.0) & (original description: no original description)","protein_coding" "PSME_00017678-RA","No alias","Pseudotsuga menziesii","(at1g30520 : 100.0) Encodes a chloroplast O-succinylbenzoyl-CoA ligase. Involved in phylloquinone biosynthesis. Knock mutant is seedling lethal.; acyl-activating enzyme 14 (AAE14); CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT4G19010.1); Has 73301 Blast hits to 67448 proteins in 3614 species: Archae - 1088; Bacteria - 49563; Metazoa - 3259; Fungi - 3557; Plants - 2200; Viruses - 1; Other Eukaryotes - 13633 (source: NCBI BLink). & (reliability: 200.0) & (original description: no original description)","protein_coding" "PSME_00017679-RA","No alias","Pseudotsuga menziesii","(at4g11260 : 371.0) Functions in plant disease resistance signaling, SCF(TIR1) mediated degradation of Aux/IAA proteins and HSP90 mediated degradation of R resistance proteins. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly expressed than AtSGT1. The N-terminal TPR domain of AtSGT1a reduces the steady-state level of Arabidopsis SGT1 proteins whereas the same domain from AtSGT1b enhances SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance.; SGT1B; FUNCTIONS IN: protein binding; INVOLVED IN: in 6 processes; LOCATED IN: SCF ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CS-like domain (InterPro:IPR007052), Tetratricopeptide-like helical (InterPro:IPR011990), SGS (InterPro:IPR007699), Tetratricopeptide repeat-containing (InterPro:IPR013026), HSP20-like chaperone (InterPro:IPR008978), Tetratricopeptide repeat (InterPro:IPR019734), CS domain (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: phosphatase-related (TAIR:AT4G23570.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q43468|stip_soybn : 80.1) Heat shock protein STI (Stress-inducible protein) (GmSTI) - Glycine max (Soybean) & (reliability: 742.0) & (original description: no original description)","protein_coding" "PSME_00017793-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00017799-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00018052-RA","No alias","Pseudotsuga menziesii","(at2g38310 : 166.0) Encodes a member of the PYR (pyrabactin resistance )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members. PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2.; PYR1-like 4 (PYL4); CONTAINS InterPro DOMAIN/s: Polyketide cyclase/dehydrase (InterPro:IPR019587); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT5G05440.1); Has 467 Blast hits to 463 proteins in 53 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 2; Plants - 445; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 332.0) & (original description: no original description)","protein_coding" "PSME_00018195-RA","No alias","Pseudotsuga menziesii","(q6f2u9|syk_orysa : 117.0) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) - Oryza sativa (Rice) & (at3g11710 : 105.0) lysyl-tRNA synthetase 1 (ATKRS-1); FUNCTIONS IN: ATP binding, lysine-tRNA ligase activity; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Lysyl-tRNA synthetase, class II (InterPro:IPR002313), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 24040 Blast hits to 20328 proteins in 2969 species: Archae - 380; Bacteria - 16623; Metazoa - 629; Fungi - 774; Plants - 209; Viruses - 0; Other Eukaryotes - 5425 (source: NCBI BLink). & (reliability: 210.0) & (original description: no original description)","protein_coding" "PSME_00018222-RA","No alias","Pseudotsuga menziesii","(at5g09220 : 667.0) member of AAAP family; amino acid permease 2 (AAP2); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid permease 4 (TAIR:AT5G63850.1); Has 2701 Blast hits to 2684 proteins in 226 species: Archae - 0; Bacteria - 6; Metazoa - 573; Fungi - 420; Plants - 1375; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink). & (reliability: 1334.0) & (original description: no original description)","protein_coding" "PSME_00018271-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00018285-RA","No alias","Pseudotsuga menziesii",""(at2g46950 : 232.0) member of CYP709B; ""cytochrome P450, family 709, subfamily B, polypeptide 2"" (CYP709B2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 709, subfamily B, polypeptide 3 (TAIR:AT4G27710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q05047|c72a1_catro : 173.0) Cytochrome P450 72A1 (EC 1.3.3.9) (CYPLXXII) (Secologanin synthase) (SLS) - Catharanthus roseus (Rosy periwinkle) (Madagascar periwinkle) & (reliability: 464.0) & (original description: no original description)"","protein_coding" "PSME_00018348-RA","No alias","Pseudotsuga menziesii","(at5g40380 : 192.0) Encodes a cysteine-rich receptor-like protein kinase.; cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (CRK42); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (TAIR:AT1G70530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q8l4h4|nork_medtr : 113.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 366.0) & (original description: no original description)","protein_coding" "PSME_00018439-RA","No alias","Pseudotsuga menziesii","(at4g11050 : 289.0) glycosyl hydrolase 9C3 (GH9C3); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Carbohydrate-binding (InterPro:IPR008965), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C2 (TAIR:AT1G64390.1); Has 1895 Blast hits to 1880 proteins in 271 species: Archae - 2; Bacteria - 695; Metazoa - 181; Fungi - 19; Plants - 923; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). & (q6l4i2|gun15_orysa : 252.0) Endoglucanase 15 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 15) - Oryza sativa (Rice) & (reliability: 578.0) & (original description: no original description)","protein_coding" "PSME_00018443-RA","No alias","Pseudotsuga menziesii","(at5g62230 : 446.0) Encodes a receptor-like kinase that, together with ER and ERL2 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. It is important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. Along with erl2 functionally compensates for loss of erecta during integument development.; ERECTA-like 1 (ERL1); FUNCTIONS IN: kinase activity; INVOLVED IN: stomatal complex morphogenesis, embryo sac development, ovule development; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: ERECTA-like 2 (TAIR:AT5G07180.1). & (p93194|rpk1_iponi : 195.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 892.0) & (original description: no original description)","protein_coding" "PSME_00018531-RA","No alias","Pseudotsuga menziesii","(at1g23740 : 136.0) Oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Quinone oxidoreductase/zeta-crystallin, conserved site (InterPro:IPR002364), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT4G13010.1); Has 40144 Blast hits to 39997 proteins in 2741 species: Archae - 622; Bacteria - 25898; Metazoa - 1494; Fungi - 3833; Plants - 1284; Viruses - 3; Other Eukaryotes - 7010 (source: NCBI BLink). & (reliability: 272.0) & (original description: no original description)","protein_coding" "PSME_00018540-RA","No alias","Pseudotsuga menziesii","(at5g07280 : 353.0) Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther.; EXCESS MICROSPOROCYTES1 (EMS1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT4G20140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p93194|rpk1_iponi : 243.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 706.0) & (original description: no original description)","protein_coding" "PSME_00018550-RA","No alias","Pseudotsuga menziesii","(at4g00905 : 108.0) NC domain-containing protein-related; CONTAINS InterPro DOMAIN/s: NC (InterPro:IPR007053); BEST Arabidopsis thaliana protein match is: NC domain-containing protein-related (TAIR:AT1G01225.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 202.0) & (original description: no original description)","protein_coding" "PSME_00018591-RA","No alias","Pseudotsuga menziesii","(at5g56510 : 185.0) Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.; pumilio 12 (PUM12); FUNCTIONS IN: RNA binding, binding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 7 (TAIR:AT1G78160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 370.0) & (original description: no original description)","protein_coding" "PSME_00018673-RA","No alias","Pseudotsuga menziesii","(p11432|eli_pea : 152.0) Early light-induced protein, chloroplast precursor (ELIP) - Pisum sativum (Garden pea) & (at3g22840 : 151.0) Encodes an early light-inducible protein.; EARLY LIGHT-INDUCABLE PROTEIN (ELIP1); BEST Arabidopsis thaliana protein match is: Chlorophyll A-B binding family protein (TAIR:AT4G14690.1); Has 319 Blast hits to 319 proteins in 50 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). & (reliability: 302.0) & (original description: no original description)","protein_coding" "PSME_00018809-RA","No alias","Pseudotsuga menziesii","(at5g06710 : 140.0) Homeobox-leucine zipper protein.; homeobox from Arabidopsis thaliana (HAT14); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (TAIR:AT4G17460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 268.0) & (original description: no original description)","protein_coding" "PSME_00018895-RA","No alias","Pseudotsuga menziesii","(at1g34060 : 127.0) Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: carbon-sulfur lyase activity, pyridoxal phosphate binding, catalytic activity; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), EGF-like, alliinase (InterPro:IPR006947), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Allinase, C-terminal (InterPro:IPR006948), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT1G34040.1); Has 224 Blast hits to 224 proteins in 37 species: Archae - 6; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). & (reliability: 254.0) & (original description: no original description)","protein_coding" "PSME_00018972-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00019046-RA","No alias","Pseudotsuga menziesii","(at1g43710 : 442.0) embryo defective 1075 (emb1075); FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity; INVOLVED IN: cellular amino acid metabolic process, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal-phosphate binding site (InterPro:IPR021115), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 2 (TAIR:AT1G65960.1); Has 3259 Blast hits to 3251 proteins in 995 species: Archae - 187; Bacteria - 1878; Metazoa - 518; Fungi - 211; Plants - 249; Viruses - 11; Other Eukaryotes - 205 (source: NCBI BLink). & (reliability: 884.0) & (original description: no original description)","protein_coding" "PSME_00019150-RA","No alias","Pseudotsuga menziesii","(at3g52820 : 555.0) purple acid phosphatase 22 (PAP22); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 21 (TAIR:AT3G52810.1); Has 2151 Blast hits to 2132 proteins in 447 species: Archae - 3; Bacteria - 778; Metazoa - 239; Fungi - 77; Plants - 761; Viruses - 0; Other Eukaryotes - 293 (source: NCBI BLink). & (q09131|ppaf_soybn : 293.0) Purple acid phosphatase precursor (EC 3.1.3.2) (Manganese(II) purple acid phosphatase) - Glycine max (Soybean) & (reliability: 1110.0) & (original description: no original description)","protein_coding" "PSME_00019237-RA","No alias","Pseudotsuga menziesii","(at5g14640 : 275.0) shaggy-like kinase 13 (SK13); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: response to salt stress, hyperosmotic response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: shaggy-related kinase 11 (TAIR:AT5G26751.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q40518|msk1_tobac : 270.0) Shaggy-related protein kinase NtK-1 (EC 2.7.11.1) - Nicotiana tabacum (Common tobacco) & (reliability: 504.0) & (original description: no original description)","protein_coding" "PSME_00019330-RA","No alias","Pseudotsuga menziesii","(at4g11220 : 250.0) VIRB2-interacting protein 2 (BTI2); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: VIRB2-interacting protein 1 (TAIR:AT4G23630.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 486.0) & (original description: no original description)","protein_coding" "PSME_00019340-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00019557-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00019640-RA","No alias","Pseudotsuga menziesii","(at1g20510 : 494.0) OPC-8:0 CoA ligase1 (OPCL1); FUNCTIONS IN: 4-coumarate-CoA ligase activity; INVOLVED IN: phenylpropanoid metabolic process, jasmonic acid biosynthetic process, response to wounding; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G20500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p14913|4cl2_petcr : 379.0) 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) - Petroselinum crispum (Parsley) (Petroselinum hortense) & (reliability: 988.0) & (original description: no original description)","protein_coding" "PSME_00019676-RA","No alias","Pseudotsuga menziesii","(at4g11050 : 263.0) glycosyl hydrolase 9C3 (GH9C3); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Carbohydrate-binding (InterPro:IPR008965), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C2 (TAIR:AT1G64390.1); Has 1895 Blast hits to 1880 proteins in 271 species: Archae - 2; Bacteria - 695; Metazoa - 181; Fungi - 19; Plants - 923; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). & (q5nat0|gun2_orysa : 217.0) Endoglucanase 2 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 2) (OsGLU5) - Oryza sativa (Rice) & (reliability: 526.0) & (original description: no original description)","protein_coding" "PSME_00019729-RA","No alias","Pseudotsuga menziesii","(at3g48000 : 613.0) Encodes a putative (NAD+) aldehyde dehydrogenase.; aldehyde dehydrogenase 2B4 (ALDH2B4); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 2B7 (TAIR:AT1G23800.1); Has 61695 Blast hits to 61296 proteins in 3003 species: Archae - 476; Bacteria - 35240; Metazoa - 2662; Fungi - 2127; Plants - 1668; Viruses - 0; Other Eukaryotes - 19522 (source: NCBI BLink). & (p17202|badh_spiol : 372.0) Betaine-aldehyde dehydrogenase, chloroplast precursor (EC 1.2.1.8) (BADH) - Spinacia oleracea (Spinach) & (reliability: 1226.0) & (original description: no original description)","protein_coding" "PSME_00019786-RA","No alias","Pseudotsuga menziesii","(q6yw46|ef1g2_orysa : 603.0) Elongation factor 1-gamma 2 (EF-1-gamma 2) (eEF-1B gamma 2) - Oryza sativa (Rice) & (at1g57720 : 589.0) Translation elongation factor EF1B, gamma chain; FUNCTIONS IN: copper ion binding, translation elongation factor activity; INVOLVED IN: response to cadmium ion, response to zinc ion; LOCATED IN: cell wall, plasma membrane, vacuole, membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Translation elongation factor EF1B, gamma chain, conserved (InterPro:IPR001662), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1B, gamma chain (TAIR:AT1G09640.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1178.0) & (original description: no original description)","protein_coding" "PSME_00019853-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00019861-RA","No alias","Pseudotsuga menziesii","(at1g24090 : 97.1) RNase H family protein; FUNCTIONS IN: ribonuclease H activity, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L9/RNase H1, N-terminal (InterPro:IPR009027), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Ribonuclease H (InterPro:IPR002156); BEST Arabidopsis thaliana protein match is: RNase H family protein (TAIR:AT5G51080.2); Has 3412 Blast hits to 3412 proteins in 738 species: Archae - 71; Bacteria - 1533; Metazoa - 7; Fungi - 2; Plants - 1270; Viruses - 0; Other Eukaryotes - 529 (source: NCBI BLink). & (reliability: 181.0) & (original description: no original description)","protein_coding" "PSME_00019929-RA","No alias","Pseudotsuga menziesii","(at3g46510 : 699.0) Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29.; plant U-box 13 (PUB13); CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: PLANT U-BOX 12 (TAIR:AT2G28830.1); Has 8308 Blast hits to 5676 proteins in 314 species: Archae - 6; Bacteria - 52; Metazoa - 2498; Fungi - 809; Plants - 4013; Viruses - 3; Other Eukaryotes - 927 (source: NCBI BLink). & (q64ha9|spl11_orysa : 659.0) Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11) - Oryza sativa (Rice) & (reliability: 1398.0) & (original description: no original description)","protein_coding" "PSME_00020001-RA","No alias","Pseudotsuga menziesii","(at3g56680 : 143.0) Single-stranded nucleic acid binding R3H protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Single-stranded nucleic acid binding R3H (InterPro:IPR001374); BEST Arabidopsis thaliana protein match is: Single-stranded nucleic acid binding R3H protein (TAIR:AT2G40960.1); Has 389 Blast hits to 389 proteins in 86 species: Archae - 0; Bacteria - 0; Metazoa - 196; Fungi - 53; Plants - 134; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). & (reliability: 286.0) & (original description: no original description)","protein_coding" "PSME_00020108-RA","No alias","Pseudotsuga menziesii","(at3g26100 : 476.0) Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G15430.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 952.0) & (original description: no original description)","protein_coding" "PSME_00020140-RA","No alias","Pseudotsuga menziesii","(at5g07050 : 353.0) nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT2G40900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 706.0) & (original description: no original description)","protein_coding" "PSME_00020186-RA","No alias","Pseudotsuga menziesii","(q85wx0|psab_pinko : 814.0) Photosystem I P700 chlorophyll a apoprotein A2 (PsaB) (PSI-B) - Pinus koraiensis (Korean pine) & (atcg00340 : 787.0) Encodes the D1 subunit of photosystem I and II reaction centers.; PSAB; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem II, photosynthesis, light harvesting in photosystem I; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I psaB (InterPro:IPR006244), Photosystem I, PsaA/PsaB (InterPro:IPR001280), Photosystem I psaA/psaB, conserved site (InterPro:IPR020586); BEST Arabidopsis thaliana protein match is: Photosystem I, PsaA/PsaB protein (TAIR:ATCG00350.1). & (reliability: 1574.0) & (original description: no original description)","protein_coding" "PSME_00020312-RA","No alias","Pseudotsuga menziesii","(at5g02230 : 307.0) Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G59480.1); Has 2249 Blast hits to 2246 proteins in 493 species: Archae - 16; Bacteria - 743; Metazoa - 0; Fungi - 143; Plants - 201; Viruses - 0; Other Eukaryotes - 1146 (source: NCBI BLink). & (reliability: 614.0) & (original description: no original description)","protein_coding" "PSME_00020331-RA","No alias","Pseudotsuga menziesii","(at1g06340 : 81.3) Plant Tudor-like protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT1G09320.1); Has 263 Blast hits to 216 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). & (reliability: 162.6) & (original description: no original description)","protein_coding" "PSME_00020428-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00020523-RA","No alias","Pseudotsuga menziesii","(at1g60420 : 125.0) Reduce transmission through pollen.; DC1 domain-containing protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: response to cadmium ion, pollen tube growth, pollen tube guidance; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), C1-like (InterPro:IPR011424), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: protein kinase C-like zinc finger protein (TAIR:AT4G31240.2); Has 6688 Blast hits to 3903 proteins in 794 species: Archae - 4; Bacteria - 4185; Metazoa - 634; Fungi - 4; Plants - 553; Viruses - 0; Other Eukaryotes - 1308 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description)","protein_coding" "PSME_00020856-RA","No alias","Pseudotsuga menziesii","(at1g75660 : 228.0) Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products.; 5'-3' exoribonuclease 3 (XRN3); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: exoribonuclease 2 (TAIR:AT5G42540.1); Has 4264 Blast hits to 3505 proteins in 442 species: Archae - 2; Bacteria - 295; Metazoa - 1361; Fungi - 725; Plants - 751; Viruses - 31; Other Eukaryotes - 1099 (source: NCBI BLink). & (reliability: 456.0) & (original description: no original description)","protein_coding" "PSME_00020881-RA","No alias","Pseudotsuga menziesii","(at5g15740 : 708.0) O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT3G02250.1); Has 822 Blast hits to 815 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 822; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 1388.0) & (original description: no original description)","protein_coding" "PSME_00020961-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00021094-RA","No alias","Pseudotsuga menziesii","(at4g13930 : 261.0) Encodes a serine hydroxymethyltransferase maximally expressed in root; serine hydroxymethyltransferase 4 (SHM4); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: response to cadmium ion, glycine metabolic process, L-serine metabolic process; LOCATED IN: cytosol, plasma membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT4G13890.1); Has 11689 Blast hits to 11661 proteins in 2862 species: Archae - 259; Bacteria - 6437; Metazoa - 341; Fungi - 289; Plants - 375; Viruses - 6; Other Eukaryotes - 3982 (source: NCBI BLink). & (p34899|glym_pea : 153.0) Serine hydroxymethyltransferase, mitochondrial precursor (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) - Pisum sativum (Garden pea) & (reliability: 522.0) & (original description: no original description)","protein_coding" "PSME_00021433-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00021508-RA","No alias","Pseudotsuga menziesii","(at5g20110 : 122.0) Dynein light chain type 1 family protein; FUNCTIONS IN: microtubule motor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1/2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: Dynein light chain type 1 family protein (TAIR:AT1G23220.1); Has 1201 Blast hits to 1201 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 594; Fungi - 104; Plants - 259; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink). & (reliability: 244.0) & (original description: no original description)","protein_coding" "PSME_00021529-RA","No alias","Pseudotsuga menziesii","(at4g08170 : 180.0) Inositol 1,3,4-trisphosphate 5/6-kinase family protein; FUNCTIONS IN: magnesium ion binding, inositol-1,3,4-trisphosphate 5/6-kinase activity, catalytic activity, ATP binding, inositol tetrakisphosphate 1-kinase activity; INVOLVED IN: response to wounding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATP-grasp fold (InterPro:IPR011761), Inositol 1, 3, 4-trisphosphate 56-kinase (InterPro:IPR008656); BEST Arabidopsis thaliana protein match is: Inositol 1,3,4-trisphosphate 5/6-kinase family protein (TAIR:AT4G33770.1). & (q84y01|itpk1_maize : 109.0) Inositol-tetrakisphosphate 1-kinase 1 (EC 2.7.1.134) (Inositol-triphosphate 5/6-kinase 1) (EC 2.7.1.159) (Inositol 1,3,4-trisphosphate 5/6-kinase 1) (Ins(1,3,4)P(3) 5/6-kinase 1) (ZmIpk) (Low phytic acid protein 2) - Zea mays (Maize) & (reliability: 360.0) & (original description: no original description)","protein_coding" "PSME_00021822-RA","No alias","Pseudotsuga menziesii","(at3g24495 : 206.0) encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH7 exhibit moderate affinity for a (T/G) substrate and weak binding of (+T), suggesting MSH2*MSH7 may be specialized for lesions/base mispairs not tested or for (T/G) mispairs in special contexts.; MUTS homolog 7 (MSH7); FUNCTIONS IN: damaged DNA binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-homologue MSH6 (InterPro:IPR015536), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695); BEST Arabidopsis thaliana protein match is: MUTS homolog 6 (TAIR:AT4G02070.2); Has 17871 Blast hits to 13835 proteins in 2667 species: Archae - 197; Bacteria - 11731; Metazoa - 1028; Fungi - 1274; Plants - 566; Viruses - 3; Other Eukaryotes - 3072 (source: NCBI BLink). & (reliability: 412.0) & (original description: no original description)","protein_coding" "PSME_00021898-RA","No alias","Pseudotsuga menziesii","(at5g64570 : 951.0) Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.; beta-D-xylosidase 4 (XYL4); FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: xylan catabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 3 (TAIR:AT5G09730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p83344|xynb_prupe : 496.0) Putative beta-D-xylosidase (EC 3.2.1.-) (PpAz152) (Fragment) - Prunus persica (Peach) & (reliability: 1902.0) & (original description: no original description)","protein_coding" "PSME_00021936-RA","No alias","Pseudotsuga menziesii","(q9slx0|ima1b_orysa : 376.0) Importin alpha-1b subunit - Oryza sativa (Rice) & (at3g06720 : 367.0) Encodes importin alpha involved in nuclear import.; AT-IMP; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: cytosol, nuclear envelope, nucleolus, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding domain (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 2 (TAIR:AT4G16143.2); Has 4059 Blast hits to 2974 proteins in 281 species: Archae - 4; Bacteria - 22; Metazoa - 1537; Fungi - 665; Plants - 1109; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink). & (reliability: 734.0) & (original description: no original description)","protein_coding" "PSME_00022004-RA","No alias","Pseudotsuga menziesii","(at5g58003 : 325.0) Encodes a polypeptide that contains FCPH and BRCT domains. RNAi suppression mutant lines were generated, which displayed a range of phenotypic abnormalities, including: incomplete to no cotyledon expansion, slow growth, epinastic leaves or small inflorescences.; C-terminal domain phosphatase-like 4 (CPL4); FUNCTIONS IN: phosphoprotein phosphatase activity; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: FCP1-like phosphatase, phosphatase domain (InterPro:IPR011947), NLI interacting factor (InterPro:IPR004274), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: C-terminal domain phosphatase-like 3 (TAIR:AT2G33540.1); Has 1202 Blast hits to 1005 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 364; Fungi - 271; Plants - 333; Viruses - 0; Other Eukaryotes - 234 (source: NCBI BLink). & (reliability: 650.0) & (original description: no original description)","protein_coding" "PSME_00022016-RA","No alias","Pseudotsuga menziesii","(at4g08170 : 165.0) Inositol 1,3,4-trisphosphate 5/6-kinase family protein; FUNCTIONS IN: magnesium ion binding, inositol-1,3,4-trisphosphate 5/6-kinase activity, catalytic activity, ATP binding, inositol tetrakisphosphate 1-kinase activity; INVOLVED IN: response to wounding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATP-grasp fold (InterPro:IPR011761), Inositol 1, 3, 4-trisphosphate 56-kinase (InterPro:IPR008656); BEST Arabidopsis thaliana protein match is: Inositol 1,3,4-trisphosphate 5/6-kinase family protein (TAIR:AT4G33770.1). & (q84y01|itpk1_maize : 98.2) Inositol-tetrakisphosphate 1-kinase 1 (EC 2.7.1.134) (Inositol-triphosphate 5/6-kinase 1) (EC 2.7.1.159) (Inositol 1,3,4-trisphosphate 5/6-kinase 1) (Ins(1,3,4)P(3) 5/6-kinase 1) (ZmIpk) (Low phytic acid protein 2) - Zea mays (Maize) & (reliability: 330.0) & (original description: no original description)","protein_coding" "PSME_00022027-RA","No alias","Pseudotsuga menziesii","(at3g11980 : 358.0) Similar to fatty acid reductases.; MALE STERILITY 2 (MS2); FUNCTIONS IN: fatty-acyl-CoA reductase (alcohol-forming) activity, oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor; INVOLVED IN: microsporogenesis, pollen exine formation; LOCATED IN: chloroplast; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Male sterility (InterPro:IPR004262), NAD(P)-binding domain (InterPro:IPR016040), Male sterility, NAD-binding (InterPro:IPR013120); BEST Arabidopsis thaliana protein match is: fatty acid reductase 6 (TAIR:AT3G56700.1); Has 2390 Blast hits to 2358 proteins in 427 species: Archae - 4; Bacteria - 606; Metazoa - 985; Fungi - 290; Plants - 282; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink). & (reliability: 716.0) & (original description: no original description)","protein_coding" "PSME_00022222-RA","No alias","Pseudotsuga menziesii","(q43033|tcmo_petcr : 497.0) Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic acid 4-hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) - Petroselinum crispum (Parsley) (Petroselinum hortense) & (at2g30490 : 493.0) Encodes a cinnamate-4-hydroxylase. Mutations in this gene impact phenylpropanoid metabolism, growth and development.; cinnamate-4-hydroxylase (C4H); FUNCTIONS IN: trans-cinnamate 4-monooxygenase activity; INVOLVED IN: in 9 processes; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 98, subfamily A, polypeptide 3 (TAIR:AT2G40890.1); Has 31278 Blast hits to 31002 proteins in 1609 species: Archae - 48; Bacteria - 2734; Metazoa - 11804; Fungi - 6596; Plants - 9113; Viruses - 3; Other Eukaryotes - 980 (source: NCBI BLink). & (reliability: 986.0) & (original description: no original description)","protein_coding" "PSME_00022225-RA","No alias","Pseudotsuga menziesii","(at4g10500 : 135.0) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: secondary metabolic process; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G10490.1); Has 8560 Blast hits to 8509 proteins in 1005 species: Archae - 0; Bacteria - 1116; Metazoa - 115; Fungi - 958; Plants - 4983; Viruses - 0; Other Eukaryotes - 1388 (source: NCBI BLink). & (reliability: 262.0) & (original description: no original description)","protein_coding" "PSME_00022232-RA","No alias","Pseudotsuga menziesii","(at1g13560 : 405.0) Encodes aminoalcoholphosphotransferase AAPT1.; aminoalcoholphosphotransferase 1 (AAPT1); FUNCTIONS IN: phosphatidyltransferase activity, phosphotransferase activity, for other substituted phosphate groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CDP-alcohol phosphatidyltransferase (InterPro:IPR000462); BEST Arabidopsis thaliana protein match is: aminoalcoholphosphotransferase (TAIR:AT3G25585.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 810.0) & (original description: no original description)","protein_coding" "PSME_00022242-RA","No alias","Pseudotsuga menziesii","(at3g03940 : 403.0) Protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT5G18190.1); Has 16177 Blast hits to 16113 proteins in 1419 species: Archae - 20; Bacteria - 5310; Metazoa - 4811; Fungi - 1519; Plants - 1815; Viruses - 223; Other Eukaryotes - 2479 (source: NCBI BLink). & (reliability: 806.0) & (original description: no original description)","protein_coding" "PSME_00022530-RA","No alias","Pseudotsuga menziesii","(at1g71870 : 285.0) MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G29140.1); Has 10234 Blast hits to 10086 proteins in 1918 species: Archae - 185; Bacteria - 7350; Metazoa - 148; Fungi - 328; Plants - 1302; Viruses - 0; Other Eukaryotes - 921 (source: NCBI BLink). & (reliability: 570.0) & (original description: no original description)","protein_coding" "PSME_00022604-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 519.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 513.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1038.0) & (original description: no original description)","protein_coding" "PSME_00022717-RA","No alias","Pseudotsuga menziesii","(at4g25640 : 131.0) Encodes a multidrug and toxin efflux family transporter. Involved in flavonoid metabolism, affecting Root growth, seed development and germination, and pollen development, release and viability.; detoxifying efflux carrier 35 (DTX35); FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: anther dehiscence, flavonoid metabolic process, pollen development; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G00350.1). & (reliability: 242.0) & (original description: no original description)","protein_coding" "PSME_00022739-RA","No alias","Pseudotsuga menziesii","(at3g10340 : 547.0) Encodes PAL4, a putative a phenylalanine ammonia-lyase. Arabidopsis has four PALs: AT2G37040 (PAL1), AT3G53260 (PAL2), AT5G04230 (PAL3) and AT3G10340 (PAL4).; phenylalanine ammonia-lyase 4 (PAL4); FUNCTIONS IN: ammonia-lyase activity, catalytic activity; INVOLVED IN: L-phenylalanine catabolic process, biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Phenylalanine/histidine ammonia-lyase (InterPro:IPR001106), Phenylalanine/histidine ammonia-lyases, active site (InterPro:IPR022313), L-Aspartase-like (InterPro:IPR008948), Phenylalanine ammonia-lyase (InterPro:IPR005922); BEST Arabidopsis thaliana protein match is: PHE ammonia lyase 1 (TAIR:AT2G37040.1); Has 4898 Blast hits to 4876 proteins in 1415 species: Archae - 40; Bacteria - 2975; Metazoa - 80; Fungi - 127; Plants - 1177; Viruses - 0; Other Eukaryotes - 499 (source: NCBI BLink). & (p53443|pal2_orysa : 538.0) Phenylalanine ammonia-lyase (EC 4.3.1.5) - Oryza sativa (Rice) & (reliability: 1094.0) & (original description: no original description)","protein_coding" "PSME_00022832-RA","No alias","Pseudotsuga menziesii","(at5g57670 : 228.0) Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G18890.1); Has 113420 Blast hits to 112131 proteins in 3664 species: Archae - 114; Bacteria - 13552; Metazoa - 41580; Fungi - 9353; Plants - 32095; Viruses - 456; Other Eukaryotes - 16270 (source: NCBI BLink). & (q8l4h4|nork_medtr : 99.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 456.0) & (original description: no original description)","protein_coding" "PSME_00022849-RA","No alias","Pseudotsuga menziesii","(at1g74260 : 197.0) Encodes formylglycinamidine ribonucleotide synthase an enzyme involved in de novo purine biosynthesis. PUR4 is localizes to the chloroplast and mitochondria. Loss of PUR4 function affects male but not female gametophyte development.; purine biosynthesis 4 (PUR4); FUNCTIONS IN: phosphoribosylformylglycinamidine synthase activity, catalytic activity, ATP binding; INVOLVED IN: microgametogenesis, pollen development; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PurM, N-terminal-like (InterPro:IPR016188), Phosphoribosylformylglycinamidine synthase, eukaryote/proteobacteria (InterPro:IPR010073), AIR synthase related protein (InterPro:IPR000728), AIR synthase related protein, C-terminal (InterPro:IPR010918), Glutamine amidotransferase type 1 (InterPro:IPR017926); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 394.0) & (original description: no original description)","protein_coding" "PSME_00022911-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00023109-RA","No alias","Pseudotsuga menziesii","(at4g30610 : 208.0) Encodes a secreted glycosylated serine carboxypeptidase with broad substrate preference that is involved in brassinosteroid signalling via BRI1. It is proteolytically processed in vivo by a separate as yet unidentified protease.; BRI1 SUPPRESSOR 1 (BRS1); CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 22 (TAIR:AT2G24000.1); Has 3492 Blast hits to 3440 proteins in 297 species: Archae - 0; Bacteria - 59; Metazoa - 632; Fungi - 854; Plants - 1543; Viruses - 0; Other Eukaryotes - 404 (source: NCBI BLink). & (p08818|cbp2_horvu : 186.0) Serine carboxypeptidase 2 precursor (EC 3.4.16.6) (Serine carboxypeptidase II) (Carboxypeptidase D) (CP-MII) [Contains: Serine carboxypeptidase 2 chain A (Serine carboxypeptidase II chain A); Serine carboxypeptidase 2 chain B (Serine ca & (reliability: 416.0) & (original description: no original description)","protein_coding" "PSME_00023144-RA","No alias","Pseudotsuga menziesii","(at4g38430 : 192.0) Member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily, also known as DUF315). Interacts with ROP1 but the whole protein lacks Rho guanyl-nucleotide exchange factor activity in vitro. The DUF315/PRONE domain is sufficient to confer RopGEF catalytic activity.; rho guanyl-nucleotide exchange factor 1 (ROPGEF1); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 7 (TAIR:AT5G02010.1); Has 308 Blast hits to 304 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 384.0) & (original description: no original description)","protein_coding" "PSME_00023220-RA","No alias","Pseudotsuga menziesii","(at1g75660 : 196.0) Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products.; 5'-3' exoribonuclease 3 (XRN3); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: exoribonuclease 2 (TAIR:AT5G42540.1); Has 4264 Blast hits to 3505 proteins in 442 species: Archae - 2; Bacteria - 295; Metazoa - 1361; Fungi - 725; Plants - 751; Viruses - 31; Other Eukaryotes - 1099 (source: NCBI BLink). & (reliability: 392.0) & (original description: no original description)","protein_coding" "PSME_00023233-RA","No alias","Pseudotsuga menziesii","(at1g60420 : 164.0) Reduce transmission through pollen.; DC1 domain-containing protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: response to cadmium ion, pollen tube growth, pollen tube guidance; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), C1-like (InterPro:IPR011424), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: protein kinase C-like zinc finger protein (TAIR:AT4G31240.2); Has 6688 Blast hits to 3903 proteins in 794 species: Archae - 4; Bacteria - 4185; Metazoa - 634; Fungi - 4; Plants - 553; Viruses - 0; Other Eukaryotes - 1308 (source: NCBI BLink). & (reliability: 328.0) & (original description: no original description)","protein_coding" "PSME_00023237-RA","No alias","Pseudotsuga menziesii","(at1g43710 : 441.0) embryo defective 1075 (emb1075); FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity; INVOLVED IN: cellular amino acid metabolic process, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal-phosphate binding site (InterPro:IPR021115), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 2 (TAIR:AT1G65960.1); Has 3259 Blast hits to 3251 proteins in 995 species: Archae - 187; Bacteria - 1878; Metazoa - 518; Fungi - 211; Plants - 249; Viruses - 11; Other Eukaryotes - 205 (source: NCBI BLink). & (reliability: 882.0) & (original description: no original description)","protein_coding" "PSME_00023292-RA","No alias","Pseudotsuga menziesii","(at5g57655 : 192.0) xylose isomerase family protein; FUNCTIONS IN: xylose isomerase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Xylose isomerase-like, TIM barrel domain (InterPro:IPR013022), Xylose isomerase, bacterial type (InterPro:IPR013452), Xylose isomerase (InterPro:IPR001998), Xylose isomerase, TIM barrel domain (InterPro:IPR012307); Has 2515 Blast hits to 2515 proteins in 856 species: Archae - 2; Bacteria - 1880; Metazoa - 11; Fungi - 2; Plants - 82; Viruses - 0; Other Eukaryotes - 538 (source: NCBI BLink). & (q40082|xyla_horvu : 183.0) Xylose isomerase (EC 5.3.1.5) - Hordeum vulgare (Barley) & (reliability: 384.0) & (original description: no original description)","protein_coding" "PSME_00023310-RA","No alias","Pseudotsuga menziesii","(at2g39420 : 229.0) alpha/beta-Hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G39410.2); Has 4720 Blast hits to 4720 proteins in 1453 species: Archae - 32; Bacteria - 3497; Metazoa - 120; Fungi - 143; Plants - 476; Viruses - 35; Other Eukaryotes - 417 (source: NCBI BLink). & (reliability: 450.0) & (original description: no original description)","protein_coding" "PSME_00023367-RA","No alias","Pseudotsuga menziesii","(at5g52390 : 158.0) PAR1 protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: PAR1 (InterPro:IPR009489); BEST Arabidopsis thaliana protein match is: PAR1 protein (TAIR:AT3G54040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 316.0) & (original description: no original description)","protein_coding" "PSME_00023469-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00023533-RA","No alias","Pseudotsuga menziesii","(at2g22610 : 397.0) Di-glucose binding protein with Kinesin motor domain; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Malectin/receptor-like protein kinase (InterPro:IPR021720), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: Di-glucose binding protein with Kinesin motor domain (TAIR:AT1G72250.2). & (p46869|fla10_chlre : 171.0) Kinesin-like protein FLA10 (Protein KHP1) - Chlamydomonas reinhardtii & (reliability: 794.0) & (original description: no original description)","protein_coding" "PSME_00023745-RA","No alias","Pseudotsuga menziesii","(at3g07290 : 143.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G65560.1); Has 55676 Blast hits to 14257 proteins in 295 species: Archae - 7; Bacteria - 69; Metazoa - 798; Fungi - 929; Plants - 52095; Viruses - 0; Other Eukaryotes - 1778 (source: NCBI BLink). & (q76c99|rf1_orysa : 124.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 286.0) & (original description: no original description)","protein_coding" "PSME_00023776-RA","No alias","Pseudotsuga menziesii","(q39857|xth_soybn : 143.0) Probable xyloglucan endotransglucosylase/hydrolase precursor (EC 2.4.1.207) (Fragment) - Glycine max (Soybean) & (at5g13870 : 142.0) EXGT-A4, endoxyloglucan transferase,; xyloglucan endotransglucosylase/hydrolase 5 (XTH5); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 4 (TAIR:AT2G06850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 284.0) & (original description: no original description)","protein_coding" "PSME_00023837-RA","No alias","Pseudotsuga menziesii","(at1g71695 : 196.0) Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: cell wall, vacuole, membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G18150.1); Has 4523 Blast hits to 4498 proteins in 279 species: Archae - 0; Bacteria - 4; Metazoa - 1; Fungi - 207; Plants - 4264; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink). & (q01548|per2_horvu : 107.0) Peroxidase 2 (EC 1.11.1.7) (Fragment) - Hordeum vulgare (Barley) & (reliability: 392.0) & (original description: no original description)","protein_coding" "PSME_00024186-RA","No alias","Pseudotsuga menziesii","(q71vm4|ima1a_orysa : 187.0) Importin alpha-1a subunit - Oryza sativa (Rice) & (at3g06720 : 184.0) Encodes importin alpha involved in nuclear import.; AT-IMP; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: cytosol, nuclear envelope, nucleolus, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding domain (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 2 (TAIR:AT4G16143.2); Has 4059 Blast hits to 2974 proteins in 281 species: Archae - 4; Bacteria - 22; Metazoa - 1537; Fungi - 665; Plants - 1109; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink). & (reliability: 368.0) & (original description: no original description)","protein_coding" "PSME_00024251-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 943.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 941.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1882.0) & (original description: no original description)","protein_coding" "PSME_00024334-RA","No alias","Pseudotsuga menziesii","(at4g09460 : 176.0) Encodes myb6 DNA-binding protein.; myb domain protein 6 (MYB6); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: high response to osmotic stress 10 (TAIR:AT1G35515.1); Has 9066 Blast hits to 8378 proteins in 471 species: Archae - 0; Bacteria - 0; Metazoa - 780; Fungi - 460; Plants - 6053; Viruses - 3; Other Eukaryotes - 1770 (source: NCBI BLink). & (p10290|mybc_maize : 172.0) Anthocyanin regulatory C1 protein - Zea mays (Maize) & (reliability: 352.0) & (original description: no original description)","protein_coding" "PSME_00024563-RA","No alias","Pseudotsuga menziesii","(at4g37080 : 199.0) Protein of unknown function, DUF547; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G42690.2). & (reliability: 398.0) & (original description: no original description)","protein_coding" "PSME_00024622-RA","No alias","Pseudotsuga menziesii","(at1g47420 : 171.0) succinate dehydrogenase 5 (SDH5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase 2 (TAIR:AT1G47260.1); Has 145 Blast hits to 145 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 342.0) & (original description: no original description)","protein_coding" "PSME_00025049-RA","No alias","Pseudotsuga menziesii","(q52qh4|nac68_orysa : 235.0) NAC domain-containing protein 68 (ONAC068) - Oryza sativa (Rice) & (at1g01720 : 232.0) Belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding and abscisic acid. ATAF1 attentuates ABA signaling and sythesis. Mutants are hyposensitive to ABA.; ATAF1; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 32 (TAIR:AT1G77450.1); Has 3043 Blast hits to 3037 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3043; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 424.0) & (original description: no original description)","protein_coding" "PSME_00025102-RA","No alias","Pseudotsuga menziesii","(q96551|metk_catro : 711.0) S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine adenosyltransferase 1) (AdoMet synthetase 1) - Catharanthus roseus (Rosy periwinkle) (Madagascar periwinkle) & (at3g17390 : 699.0) S-adenosylmethionine synthetase; METHIONINE OVER-ACCUMULATOR 3 (MTO3); FUNCTIONS IN: methionine adenosyltransferase activity; INVOLVED IN: lignin biosynthetic process, response to cold, methionine metabolic process, S-adenosylmethionine biosynthetic process; LOCATED IN: nucleolus, cell wall, plasma membrane, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine synthetase (InterPro:IPR002133), S-adenosylmethionine synthetase superfamily (InterPro:IPR022636), S-adenosylmethionine synthetase, N-terminal (InterPro:IPR022628), S-adenosylmethionine synthetase, C-terminal (InterPro:IPR022630), S-adenosylmethionine synthetase, conserved site (InterPro:IPR022631), S-adenosylmethionine synthetase, central domain (InterPro:IPR022629); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine synthetase 1 (TAIR:AT1G02500.2); Has 10856 Blast hits to 10849 proteins in 2868 species: Archae - 12; Bacteria - 5440; Metazoa - 373; Fungi - 167; Plants - 707; Viruses - 1; Other Eukaryotes - 4156 (source: NCBI BLink). & (reliability: 1390.0) & (original description: no original description)","protein_coding" "PSME_00025132-RA","No alias","Pseudotsuga menziesii","(at3g26100 : 531.0) Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G15430.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1062.0) & (original description: no original description)","protein_coding" "PSME_00025162-RA","No alias","Pseudotsuga menziesii","(at2g34250 : 855.0) SecY protein transport family protein; FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: response to salt stress, protein secretion; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SecY protein (InterPro:IPR002208), Translocon Sec61/SecY, plug domain (InterPro:IPR019561); BEST Arabidopsis thaliana protein match is: SecY protein transport family protein (TAIR:AT1G29310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1710.0) & (original description: no original description)","protein_coding" "PSME_00025274-RA","No alias","Pseudotsuga menziesii","(at2g22610 : 277.0) Di-glucose binding protein with Kinesin motor domain; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Malectin/receptor-like protein kinase (InterPro:IPR021720), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: Di-glucose binding protein with Kinesin motor domain (TAIR:AT1G72250.2). & (p46869|fla10_chlre : 118.0) Kinesin-like protein FLA10 (Protein KHP1) - Chlamydomonas reinhardtii & (reliability: 554.0) & (original description: no original description)","protein_coding" "PSME_00025312-RA","No alias","Pseudotsuga menziesii","(at1g47420 : 192.0) succinate dehydrogenase 5 (SDH5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase 2 (TAIR:AT1G47260.1); Has 145 Blast hits to 145 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 384.0) & (original description: no original description)","protein_coding" "PSME_00025321-RA","No alias","Pseudotsuga menziesii","(at5g02370 : 148.0) ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, DNA binding, ATP binding; INVOLVED IN: DNA repair, microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT5G23910.1); Has 10070 Blast hits to 9659 proteins in 326 species: Archae - 0; Bacteria - 33; Metazoa - 4508; Fungi - 1335; Plants - 1813; Viruses - 0; Other Eukaryotes - 2381 (source: NCBI BLink). & (reliability: 296.0) & (original description: no original description)","protein_coding" "PSME_00025391-RA","No alias","Pseudotsuga menziesii","(at1g77380 : 216.0) Amino acid permease which transports basic amino acids.; amino acid permease 3 (AAP3); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: amino acid permease 2 (TAIR:AT5G09220.1); Has 2346 Blast hits to 2332 proteins in 227 species: Archae - 0; Bacteria - 15; Metazoa - 394; Fungi - 322; Plants - 1373; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink). & (reliability: 432.0) & (original description: no original description)","protein_coding" "PSME_00025428-RA","No alias","Pseudotsuga menziesii","(at5g57150 : 95.5) basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G29930.3). & (p13027|arrs_maize : 81.3) Anthocyanin regulatory R-S protein - Zea mays (Maize) & (reliability: 191.0) & (original description: no original description)","protein_coding" "PSME_00025548-RA","No alias","Pseudotsuga menziesii","(o82515|mtdh_medsa : 129.0) Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) - Medicago sativa (Alfalfa) & (at4g39330 : 120.0) cinnamyl alcohol dehydrogenase 9 (CAD9); FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: cinnamyl alcohol dehydrogenase homolog 3 (TAIR:AT2G21890.1); Has 37105 Blast hits to 37091 proteins in 3040 species: Archae - 773; Bacteria - 24856; Metazoa - 1252; Fungi - 2806; Plants - 2933; Viruses - 3; Other Eukaryotes - 4482 (source: NCBI BLink). & (reliability: 240.0) & (original description: no original description)","protein_coding" "PSME_00025588-RA","No alias","Pseudotsuga menziesii","(q09151|glua3_orysa : 186.0) Glutelin type-A 3 precursor [Contains: Glutelin type-A 3 acidic chain; Glutelin type-A 3 basic chain] - Oryza sativa (Rice) & (at4g28520 : 169.0) Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.; cruciferin 3 (CRU3); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to abscisic acid stimulus, embryo development ending in seed dormancy; LOCATED IN: protein body; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: 11-S seed storage protein, conserved site (InterPro:IPR022379), Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S seed storage protein, plant (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT5G44120.3); Has 6292 Blast hits to 2835 proteins in 438 species: Archae - 6; Bacteria - 845; Metazoa - 715; Fungi - 295; Plants - 2066; Viruses - 10; Other Eukaryotes - 2355 (source: NCBI BLink). & (reliability: 338.0) & (original description: no original description)","protein_coding" "PSME_00025643-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00025685-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00025727-RA","No alias","Pseudotsuga menziesii","(at5g55300 : 100.0) Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. Functions in stem cell maintenance at all stages of shoot and floral meristems and in the regulation of gene silencing.; DNA topoisomerase I alpha (TOP1ALPHA); FUNCTIONS IN: protein binding, DNA topoisomerase type I activity; INVOLVED IN: in 8 processes; LOCATED IN: chromosome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499); BEST Arabidopsis thaliana protein match is: DNA topoisomerase 1 beta (TAIR:AT5G55310.1). & (p93119|top1_dauca : 98.2) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) - Daucus carota (Carrot) & (reliability: 200.0) & (original description: no original description)","protein_coding" "PSME_00025799-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00025833-RA","No alias","Pseudotsuga menziesii","(at5g65730 : 294.0) xyloglucan endotransglucosylase/hydrolase 6 (XTH6); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: response to water deprivation; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 7 (TAIR:AT4G37800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p93349|xth_tobac : 230.0) Probable xyloglucan endotransglucosylase/hydrolase protein precursor (EC 2.4.1.207) - Nicotiana tabacum (Common tobacco) & (reliability: 588.0) & (original description: no original description)","protein_coding" "PSME_00025875-RA","No alias","Pseudotsuga menziesii","(at1g19715 : 86.3) Mannose-binding lectin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G73040.1). & (reliability: 160.2) & (original description: no original description)","protein_coding" "PSME_00026155-RA","No alias","Pseudotsuga menziesii","(at4g02290 : 665.0) glycosyl hydrolase 9B13 (GH9B13); FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: cellulase 2 (TAIR:AT1G02800.1); Has 1736 Blast hits to 1717 proteins in 249 species: Archae - 2; Bacteria - 566; Metazoa - 187; Fungi - 17; Plants - 926; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). & (q8lq92|gun3_orysa : 640.0) Endoglucanase 3 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 3) (OsGLU8) - Oryza sativa (Rice) & (reliability: 1330.0) & (original description: no original description)","protein_coding" "PSME_00026188-RA","No alias","Pseudotsuga menziesii","(at4g37080 : 202.0) Protein of unknown function, DUF547; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G42690.2). & (reliability: 404.0) & (original description: no original description)","protein_coding" "PSME_00026204-RA","No alias","Pseudotsuga menziesii","(at3g05500 : 108.0) Rubber elongation factor protein (REF); INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: Rubber elongation factor protein (REF) (TAIR:AT2G47780.1); Has 129 Blast hits to 129 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (q9fra7|y5940_orysa : 95.9) Putative REF/SRPP-like protein Os05g0151300 - Oryza sativa (Rice) & (reliability: 216.0) & (original description: no original description)","protein_coding" "PSME_00026355-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00026472-RA","No alias","Pseudotsuga menziesii","(p93422|syh_orysa : 147.0) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA ligase) (HisRS) - Oryza sativa (Rice) & (at3g02760 : 143.0) Class II aaRS and biotin synthetases superfamily protein; FUNCTIONS IN: histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidyl-tRNA synthetase, class IIa, subgroup (InterPro:IPR015807), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Anticodon-binding (InterPro:IPR004154), Histidyl-tRNA synthetase, class IIa (InterPro:IPR004516), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Histidyl-tRNA synthetase 1 (TAIR:AT3G46100.1); Has 12532 Blast hits to 12512 proteins in 2976 species: Archae - 257; Bacteria - 7359; Metazoa - 371; Fungi - 267; Plants - 113; Viruses - 0; Other Eukaryotes - 4165 (source: NCBI BLink). & (reliability: 286.0) & (original description: no original description)","protein_coding" "PSME_00026505-RA","No alias","Pseudotsuga menziesii","(at3g58690 : 148.0) Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G54820.1); Has 119556 Blast hits to 118228 proteins in 3954 species: Archae - 119; Bacteria - 14059; Metazoa - 43160; Fungi - 10190; Plants - 33928; Viruses - 396; Other Eukaryotes - 17704 (source: NCBI BLink). & (o24585|cri4_maize : 80.1) Putative receptor protein kinase CRINKLY4 precursor (EC 2.7.11.1) - Zea mays (Maize) & (reliability: 296.0) & (original description: no original description)","protein_coding" "PSME_00026750-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00026969-RA","No alias","Pseudotsuga menziesii","(at1g43710 : 394.0) embryo defective 1075 (emb1075); FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity; INVOLVED IN: cellular amino acid metabolic process, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal-phosphate binding site (InterPro:IPR021115), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 2 (TAIR:AT1G65960.1); Has 3259 Blast hits to 3251 proteins in 995 species: Archae - 187; Bacteria - 1878; Metazoa - 518; Fungi - 211; Plants - 249; Viruses - 11; Other Eukaryotes - 205 (source: NCBI BLink). & (reliability: 788.0) & (original description: no original description)","protein_coding" "PSME_00027075-RA","No alias","Pseudotsuga menziesii","(o81122|etr1_maldo : 1145.0) Ethylene receptor (EC 2.7.13.3) - Malus domestica (Apple) (Malus sylvestris) & (at1g66340 : 1101.0) Similar to prokaryote sensory transduction proteins. Contains a histidine kinase and a response regulator domain. Homodimer. Membrane component. Binds ethylene. Mutations affect ethylene binding and metabolism of other plant hormones such as auxin, cytokinins, ABA and gibberellic acid. Ethylene receptor. Has histidine kinase activity. Is regulated by RTE1.; ETHYLENE RESPONSE 1 (ETR1); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction histidine kinase, hybrid-type, ethylene sensor (InterPro:IPR014525), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), GAF (InterPro:IPR003018), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: ethylene response sensor 1 (TAIR:AT2G40940.1); Has 102721 Blast hits to 98263 proteins in 3046 species: Archae - 757; Bacteria - 90102; Metazoa - 18; Fungi - 1611; Plants - 2314; Viruses - 21; Other Eukaryotes - 7898 (source: NCBI BLink). & (reliability: 2202.0) & (original description: no original description)","protein_coding" "PSME_00027085-RA","No alias","Pseudotsuga menziesii","(at1g09700 : 88.6) Encodes a nuclear dsRNA binding protein. Involved in mRNA cleavage. The mutant is characterized by shorter stature, delayed flowering, leaf hyponasty, reduced fertility, decreased rate of root growth, and an altered root gravitropic response. It also exhibits less sensitivity to auxin and cytokinin.; HYPONASTIC LEAVES 1 (HYL1); CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159), Double-stranded RNA-binding-like (InterPro:IPR014720); BEST Arabidopsis thaliana protein match is: dsRNA-binding protein 2 (TAIR:AT2G28380.1); Has 992 Blast hits to 893 proteins in 320 species: Archae - 14; Bacteria - 506; Metazoa - 117; Fungi - 6; Plants - 270; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink). & (reliability: 177.2) & (original description: no original description)","protein_coding" "PSME_00027092-RA","No alias","Pseudotsuga menziesii","(q41741|if4a_maize : 194.0) Eukaryotic initiation factor 4A (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A) (eIF-4A) - Zea mays (Maize) & (at3g13920 : 192.0) eukaryotic translation initiation factor 4A-1; eukaryotic translation initiation factor 4A1 (EIF4A1); CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: eif4a-2 (TAIR:AT1G54270.2). & (reliability: 384.0) & (original description: no original description)","protein_coding" "PSME_00027194-RA","No alias","Pseudotsuga menziesii","(at1g56150 : 81.6) SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT3G12830.1); Has 1156 Blast hits to 1154 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1155; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 163.2) & (original description: no original description)","protein_coding" "PSME_00027223-RA","No alias","Pseudotsuga menziesii","(p22195|per1_arahy : 429.0) Cationic peroxidase 1 precursor (EC 1.11.1.7) (PNPC1) - Arachis hypogaea (Peanut) & (at5g05340 : 395.0) Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G58400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 790.0) & (original description: no original description)","protein_coding" "PSME_00027226-RA","No alias","Pseudotsuga menziesii","(at2g18900 : 155.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT3G26480.1); Has 4620 Blast hits to 3140 proteins in 363 species: Archae - 18; Bacteria - 1955; Metazoa - 712; Fungi - 1091; Plants - 306; Viruses - 0; Other Eukaryotes - 538 (source: NCBI BLink). & (reliability: 310.0) & (original description: no original description)","protein_coding" "PSME_00027246-RA","No alias","Pseudotsuga menziesii","(p30222|hs22c_pethy : 165.0) Small heat shock protein, chloroplast precursor - Petunia hybrida (Petunia) & (at4g27670 : 162.0) chloroplast located small heat shock protein.; heat shock protein 21 (HSP21); CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT5G51440.1); Has 6158 Blast hits to 6158 proteins in 1414 species: Archae - 225; Bacteria - 3528; Metazoa - 23; Fungi - 170; Plants - 1466; Viruses - 0; Other Eukaryotes - 746 (source: NCBI BLink). & (reliability: 324.0) & (original description: no original description)","protein_coding" "PSME_00027521-RA","No alias","Pseudotsuga menziesii","(at1g02850 : 306.0) beta glucosidase 11 (BGLU11); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 10 (TAIR:AT4G27830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p29736|myra_sinal : 231.0) Myrosinase MA1 (EC 3.2.1.147) (Sinigrinase) (Thioglucosidase) - Sinapis alba (White mustard) (Brassica hirta) & (reliability: 612.0) & (original description: no original description)","protein_coding" "PSME_00027524-RA","No alias","Pseudotsuga menziesii",""(at2g46950 : 109.0) member of CYP709B; ""cytochrome P450, family 709, subfamily B, polypeptide 2"" (CYP709B2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 709, subfamily B, polypeptide 3 (TAIR:AT4G27710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q05047|c72a1_catro : 89.0) Cytochrome P450 72A1 (EC 1.3.3.9) (CYPLXXII) (Secologanin synthase) (SLS) - Catharanthus roseus (Rosy periwinkle) (Madagascar periwinkle) & (reliability: 218.0) & (original description: no original description)"","protein_coding" "PSME_00027531-RA","No alias","Pseudotsuga menziesii","(p48977|adh_maldo : 159.0) Alcohol dehydrogenase (EC 1.1.1.1) - Malus domestica (Apple) (Malus sylvestris) & (at1g77120 : 150.0) Catalyzes the reduction of acetaldehyde using NADH as reductant. Requires zinc for activity. Dimer. Anaerobic response polypeptide (ANP). Fermentation. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide.; alcohol dehydrogenase 1 (ADH1); FUNCTIONS IN: alcohol dehydrogenase (NAD) activity; INVOLVED IN: response to cadmium ion, cellular respiration, response to salt stress, response to hypoxia, response to osmotic stress; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: GroES-like zinc-binding dehydrogenase family protein (TAIR:AT5G43940.1); Has 34806 Blast hits to 34785 proteins in 3218 species: Archae - 735; Bacteria - 22358; Metazoa - 1323; Fungi - 2490; Plants - 4199; Viruses - 3; Other Eukaryotes - 3698 (source: NCBI BLink). & (reliability: 300.0) & (original description: no original description)","protein_coding" "PSME_00027564-RA","No alias","Pseudotsuga menziesii","(at2g28420 : 157.0) Lactoylglutathione lyase / glyoxalase I family protein; CONTAINS InterPro DOMAIN/s: Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Lactoylglutathione lyase / glyoxalase I family protein (TAIR:AT1G80160.1); Has 1054 Blast hits to 1054 proteins in 326 species: Archae - 2; Bacteria - 538; Metazoa - 105; Fungi - 6; Plants - 229; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink). & (reliability: 314.0) & (original description: no original description)","protein_coding" "PSME_00027571-RA","No alias","Pseudotsuga menziesii","(q40082|xyla_horvu : 176.0) Xylose isomerase (EC 5.3.1.5) - Hordeum vulgare (Barley) & (at5g57655 : 173.0) xylose isomerase family protein; FUNCTIONS IN: xylose isomerase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Xylose isomerase-like, TIM barrel domain (InterPro:IPR013022), Xylose isomerase, bacterial type (InterPro:IPR013452), Xylose isomerase (InterPro:IPR001998), Xylose isomerase, TIM barrel domain (InterPro:IPR012307); Has 2515 Blast hits to 2515 proteins in 856 species: Archae - 2; Bacteria - 1880; Metazoa - 11; Fungi - 2; Plants - 82; Viruses - 0; Other Eukaryotes - 538 (source: NCBI BLink). & (reliability: 346.0) & (original description: no original description)","protein_coding" "PSME_00027630-RA","No alias","Pseudotsuga menziesii","(at1g80440 : 90.1) Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G15670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 180.2) & (original description: no original description)","protein_coding" "PSME_00027692-RA","No alias","Pseudotsuga menziesii","(at4g23180 : 431.0) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307); cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (CRK10); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (TAIR:AT4G23160.1); Has 124145 Blast hits to 122467 proteins in 4564 species: Archae - 110; Bacteria - 14159; Metazoa - 45299; Fungi - 10862; Plants - 34986; Viruses - 473; Other Eukaryotes - 18256 (source: NCBI BLink). & (q8lkz1|nork_pea : 218.0) Nodulation receptor kinase precursor (EC 2.7.11.1) - Pisum sativum (Garden pea) & (reliability: 862.0) & (original description: no original description)","protein_coding" "PSME_00027716-RA","No alias","Pseudotsuga menziesii","(q7f2l3|nac48_orysa : 156.0) NAC domain-containing protein 48 (ONAC048) - Oryza sativa (Rice) & (at1g77450 : 151.0) NAC domain containing protein 32 (NAC032); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT1G01720.1); Has 3015 Blast hits to 3009 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3015; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 292.0) & (original description: no original description)","protein_coding" "PSME_00027726-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00027792-RA","No alias","Pseudotsuga menziesii","(at2g24640 : 536.0) ubiquitin-specific protease 19 (UBP19); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 18 (TAIR:AT4G31670.1). & (reliability: 1072.0) & (original description: no original description)","protein_coding" "PSME_00027993-RA","No alias","Pseudotsuga menziesii","(at2g44580 : 295.0) zinc ion binding; CONTAINS InterPro DOMAIN/s: Sister chromatid cohesion protein DCC1 (InterPro:IPR019128); Has 214 Blast hits to 211 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 49; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 590.0) & (original description: no original description)","protein_coding" "PSME_00028025-RA","No alias","Pseudotsuga menziesii","(at1g15950 : 102.0) Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.; cinnamoyl coa reductase 1 (CCR1); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase (TAIR:AT1G80820.1); Has 11995 Blast hits to 11983 proteins in 1896 species: Archae - 218; Bacteria - 5371; Metazoa - 416; Fungi - 931; Plants - 2539; Viruses - 54; Other Eukaryotes - 2466 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description)","protein_coding" "PSME_00028078-RA","No alias","Pseudotsuga menziesii","(q41142|plda1_ricco : 172.0) Phospholipase D alpha 1 precursor (EC 3.1.4.4) (PLD 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) - Ricinus communis (Castor bean) & (at3g15730 : 162.0) Encodes phospholipase D alpha 1 (PLD alpha 1). Positive regulator of abscisic acid (ABA) mediated stomatal movements. PLD alpha 1 plays an important role in seed deterioration and aging in Arabidopsis.; phospholipase D alpha 1 (PLDALPHA1); FUNCTIONS IN: phospholipase D activity, phosphatidylinositol-4,5-bisphosphate binding; INVOLVED IN: response to cadmium ion, fatty acid metabolic process, seed germination, regulation of stomatal movement, positive regulation of abscisic acid mediated signaling pathway; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase D (InterPro:IPR015679), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase D, plant (InterPro:IPR011402); BEST Arabidopsis thaliana protein match is: phospholipase D alpha 2 (TAIR:AT1G52570.1); Has 2073 Blast hits to 1588 proteins in 412 species: Archae - 0; Bacteria - 593; Metazoa - 344; Fungi - 417; Plants - 575; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink). & (reliability: 324.0) & (original description: no original description)","protein_coding" "PSME_00028182-RA","No alias","Pseudotsuga menziesii","(at3g54560 : 144.0) Encodes HTA11, a histone H2A protein.; histone H2A 11 (HTA11); FUNCTIONS IN: DNA binding; INVOLVED IN: flower development, detection of temperature stimulus, defense response to bacterium; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 8 (TAIR:AT2G38810.2); Has 3864 Blast hits to 3859 proteins in 326 species: Archae - 0; Bacteria - 0; Metazoa - 2525; Fungi - 296; Plants - 612; Viruses - 2; Other Eukaryotes - 429 (source: NCBI BLink). & (q8h7y8|h2av1_orysa : 142.0) Probable histone H2A variant 1 - Oryza sativa (Rice) & (reliability: 288.0) & (original description: no original description)","protein_coding" "PSME_00028209-RA","No alias","Pseudotsuga menziesii","(at3g02820 : 142.0) zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: cell cycle, replication fork protection, response to DNA damage stimulus; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Replication fork protection component Swi3 (InterPro:IPR012923), Zinc finger, CCHC-type (InterPro:IPR001878); Has 415 Blast hits to 415 proteins in 134 species: Archae - 0; Bacteria - 4; Metazoa - 156; Fungi - 94; Plants - 93; Viruses - 28; Other Eukaryotes - 40 (source: NCBI BLink). & (q40345|idhp_medsa : 101.0) Isocitrate dehydrogenase [NADP], chloroplast precursor (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) (Fragment) - Medicago sativa (Alfalfa) & (reliability: 284.0) & (original description: no original description)","protein_coding" "PSME_00028280-RA","No alias","Pseudotsuga menziesii","(q9xed7|r51a2_maize : 303.0) DNA repair protein RAD51 homolog B (Rad51-like protein B) (RAD51B) (ZmRAD51b) - Zea mays (Maize) & (at5g20850 : 301.0) Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation.; RAS associated with diabetes protein 51 (RAD51); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, double-strand break repair, response to gamma radiation, response to radiation, DNA metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), DNA repair Rad51/transcription factor NusA, alpha-helical (InterPro:IPR010995), DNA recombination and repair protein, RecA-like (InterPro:IPR016467), DNA recombination/repair protein Rad51 (InterPro:IPR011941), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), ATPase, AAA+ type, core (InterPro:IPR003593), DNA recombination and repair protein Rad51, C-terminal (InterPro:IPR013632), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587); BEST Arabidopsis thaliana protein match is: DNA repair (Rad51) family protein (TAIR:AT3G22880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 602.0) & (original description: no original description)","protein_coding" "PSME_00028299-RA","No alias","Pseudotsuga menziesii","(at1g11390 : 686.0) Protein kinase superfamily protein; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G61640.1); Has 9400 Blast hits to 9333 proteins in 1787 species: Archae - 122; Bacteria - 4339; Metazoa - 436; Fungi - 531; Plants - 684; Viruses - 14; Other Eukaryotes - 3274 (source: NCBI BLink). & (reliability: 1372.0) & (original description: no original description)","protein_coding" "PSME_00028331-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 696.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 693.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1392.0) & (original description: no original description)","protein_coding" "PSME_00028413-RA","No alias","Pseudotsuga menziesii","(at5g50400 : 352.0) purple acid phosphatase 27 (PAP27); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 24 (TAIR:AT4G24890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q687e1|npp_horvu : 234.0) Nucleotide pyrophosphatase/phosphodiesterase (EC 3.-.-.-) (Fragments) - Hordeum vulgare (Barley) & (reliability: 704.0) & (original description: no original description)","protein_coding" "PSME_00028439-RA","No alias","Pseudotsuga menziesii","(at5g67480 : 229.0) BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves.; BTB and TAZ domain protein 4 (BT4); FUNCTIONS IN: transcription regulator activity; INVOLVED IN: response to auxin stimulus, response to gibberellin stimulus; LOCATED IN: plasma membrane, cytoplasm; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), Zinc finger, TAZ-type (InterPro:IPR000197), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB and TAZ domain protein 5 (TAIR:AT4G37610.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 458.0) & (original description: no original description)","protein_coding" "PSME_00028654-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00028711-RA","No alias","Pseudotsuga menziesii","(at2g20750 : 151.0) member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio); expansin B1 (EXPB1); INVOLVED IN: plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B3 (TAIR:AT4G28250.1); Has 2076 Blast hits to 2069 proteins in 143 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 9; Plants - 2024; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). & (q6h676|exb11_orysa : 145.0) Expansin-B11 precursor (OsEXPB11) (Beta-expansin-11) (OsaEXPb1.20) - Oryza sativa (Rice) & (reliability: 302.0) & (original description: no original description)","protein_coding" "PSME_00028740-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00028872-RA","No alias","Pseudotsuga menziesii"," (original description: no original description)","protein_coding" "PSME_00028875-RA","No alias","Pseudotsuga menziesii","(at2g40610 : 274.0) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.; expansin A8 (EXPA8); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, syncytium formation, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A2 (TAIR:AT5G05290.1); Has 2297 Blast hits to 2294 proteins in 186 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 45; Plants - 2187; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). & (q40636|expa2_orysa : 256.0) Expansin-A2 precursor (OsEXPA2) (Alpha-expansin-2) (OsEXP2) (OsaEXPa1.23) (RiExB) (RiExC) - Oryza sativa (Rice) & (reliability: 548.0) & (original description: no original description)","protein_coding" "PSME_00029060-RA","No alias","Pseudotsuga menziesii","(at3g24660 : 145.0) member of Receptor kinase-like protein family; transmembrane kinase-like 1 (TMKL1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: inflorescence meristem receptor-like kinase 2 (TAIR:AT3G51740.1); Has 102882 Blast hits to 72978 proteins in 2721 species: Archae - 76; Bacteria - 8021; Metazoa - 22133; Fungi - 3923; Plants - 58593; Viruses - 201; Other Eukaryotes - 9935 (source: NCBI BLink). & (reliability: 290.0) & (original description: no original description)","protein_coding" "PSME_00029071-RA","No alias","Pseudotsuga menziesii","(at2g05160 : 348.0) CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G52980.1); Has 286 Blast hits to 218 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). & (reliability: 696.0) & (original description: no original description)","protein_coding" "PSME_00029240-RA","No alias","Pseudotsuga menziesii","(at4g29270 : 216.0) HAD superfamily, subfamily IIIB acid phosphatase ; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT4G29260.1); Has 719 Blast hits to 714 proteins in 195 species: Archae - 0; Bacteria - 324; Metazoa - 0; Fungi - 0; Plants - 383; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). & (p15490|vspa_soybn : 161.0) Stem 28 kDa glycoprotein precursor (Vegetative storage protein A) - Glycine max (Soybean) & (reliability: 432.0) & (original description: no original description)","protein_coding" "PSME_00029392-RA","No alias","Pseudotsuga menziesii","(at5g35160 : 122.0) Endomembrane protein 70 protein family; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT4G12650.1). & (reliability: 244.0) & (original description: no original description)","protein_coding" "PSME_00029450-RA","No alias","Pseudotsuga menziesii","(at1g32300 : 258.0) D-arabinono-1,4-lactone oxidase family protein; FUNCTIONS IN: oxidoreductase activity, D-arabinono-1,4-lactone oxidase activity, FAD binding, catalytic activity; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: D-arabinono-1,4-lactone oxidase (InterPro:IPR007173), FAD-binding, type 2 (InterPro:IPR016166), Plant-specific FAD-dependent oxidoreductase (InterPro:IPR010030), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: D-arabinono-1,4-lactone oxidase family protein (TAIR:AT5G56490.1); Has 2573 Blast hits to 2542 proteins in 768 species: Archae - 19; Bacteria - 1742; Metazoa - 82; Fungi - 220; Plants - 254; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink). & (reliability: 516.0) & (original description: no original description)","protein_coding" "PSME_00029649-RA","No alias","Pseudotsuga menziesii","(at2g22610 : 260.0) Di-glucose binding protein with Kinesin motor domain; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Malectin/receptor-like protein kinase (InterPro:IPR021720), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: Di-glucose binding protein with Kinesin motor domain (TAIR:AT1G72250.2). & (p46869|fla10_chlre : 122.0) Kinesin-like protein FLA10 (Protein KHP1) - Chlamydomonas reinhardtii & (reliability: 520.0) & (original description: no original description)","protein_coding" "PSME_00029717-RA","No alias","Pseudotsuga menziesii","(at4g18020 : 178.0) Encodes pseudo-response regulator 2 (APRR2) that interacts with a calcium sensor (CML9).; APRR2; CONTAINS InterPro DOMAIN/s: Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Signal transduction response regulator, receiver domain (InterPro:IPR001789), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: GBF's pro-rich region-interacting factor 1 (TAIR:AT2G20570.1). & (reliability: 356.0) & (original description: no original description)","protein_coding" "PSME_00029739-RA","No alias","Pseudotsuga menziesii","(at1g04180 : 509.0) YUCCA 9 (YUC9); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT5G43890.1); Has 11871 Blast hits to 11852 proteins in 1762 species: Archae - 17; Bacteria - 7034; Metazoa - 796; Fungi - 1508; Plants - 659; Viruses - 0; Other Eukaryotes - 1857 (source: NCBI BLink). & (reliability: 1018.0) & (original description: no original description)","protein_coding" "PSME_00030487-RA","No alias","Pseudotsuga menziesii","(at5g40780 : 431.0) Encodes LHT1 (lysine histidine transporter), a high-affinity transporter for cellular amino acid uptake in both root epidermis and leaf mesophyll.; lysine histidine transporter 1; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: amino acid transport, response to karrikin, amino acid import; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT1G48640.1); Has 4130 Blast hits to 4123 proteins in 343 species: Archae - 7; Bacteria - 195; Metazoa - 1180; Fungi - 628; Plants - 1642; Viruses - 0; Other Eukaryotes - 478 (source: NCBI BLink). & (reliability: 862.0) & (original description: no original description)","protein_coding" "PSME_00030527-RA","No alias","Pseudotsuga menziesii","(at2g18900 : 168.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT3G26480.1); Has 4620 Blast hits to 3140 proteins in 363 species: Archae - 18; Bacteria - 1955; Metazoa - 712; Fungi - 1091; Plants - 306; Viruses - 0; Other Eukaryotes - 538 (source: NCBI BLink). & (reliability: 336.0) & (original description: no original description)","protein_coding" "PSME_00030529-RA","No alias","Pseudotsuga menziesii","(at5g04780 : 154.0) Pentatricopeptide repeat (PPR) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G02750.1); Has 38256 Blast hits to 13510 proteins in 241 species: Archae - 0; Bacteria - 13; Metazoa - 59; Fungi - 56; Plants - 37619; Viruses - 0; Other Eukaryotes - 509 (source: NCBI BLink). & (reliability: 294.0) & (original description: no original description)","protein_coding" "PSME_00030652-RA","No alias","Pseudotsuga menziesii","(at5g55310 : 152.0) Encodes one of two Arabidopsis type-I DNA topoisomerase I genes. Reducing the level of expression of this gene in a top1alpha (At5g55300) mutant background causes seedling lethality.; DNA topoisomerase 1 beta (TOP1BETA); FUNCTIONS IN: DNA topoisomerase type I activity; INVOLVED IN: DNA topological change; LOCATED IN: membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, DNA binding, mixed alpha/beta motif, eukaryotic-type (InterPro:IPR013030), DNA topoisomerase I, DNA binding, eukaryotic-type (InterPro:IPR008336), DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010); BEST Arabidopsis thaliana protein match is: DNA topoisomerase I alpha (TAIR:AT5G55300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p93119|top1_dauca : 139.0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) - Daucus carota (Carrot) & (reliability: 304.0) & (original description: no original description)","protein_coding" "PSME_00030661-RA","No alias","Pseudotsuga menziesii","(at4g33260 : 238.0) putative cdc20 protein (CDC20.2); CDC20.2; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT4G33270.1). & (reliability: 476.0) & (original description: no original description)","protein_coding" "PSME_00030756-RA","No alias","Pseudotsuga menziesii","(at5g55310 : 94.0) Encodes one of two Arabidopsis type-I DNA topoisomerase I genes. Reducing the level of expression of this gene in a top1alpha (At5g55300) mutant background causes seedling lethality.; DNA topoisomerase 1 beta (TOP1BETA); FUNCTIONS IN: DNA topoisomerase type I activity; INVOLVED IN: DNA topological change; LOCATED IN: membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, DNA binding, mixed alpha/beta motif, eukaryotic-type (InterPro:IPR013030), DNA topoisomerase I, DNA binding, eukaryotic-type (InterPro:IPR008336), DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010); BEST Arabidopsis thaliana protein match is: DNA topoisomerase I alpha (TAIR:AT5G55300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p93119|top1_dauca : 87.4) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) - Daucus carota (Carrot) & (reliability: 188.0) & (original description: no original description)","protein_coding" "PSME_00030764-RA","No alias","Pseudotsuga menziesii","(q8w013|comt1_catro : 213.0) Caffeic acid 3-O-methyltransferase (EC 2.1.1.68) (S-adenosysl-L-methionine:caffeic acid 3-O-methyltransferase) (COMT) (CAOMT) - Catharanthus roseus (Rosy periwinkle) (Madagascar periwinkle) & (at5g54160 : 210.0) A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3í-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3í-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase; O-methyltransferase 1 (OMT1); FUNCTIONS IN: myricetin 3'-O-methyltransferase activity, quercetin 3-O-methyltransferase activity, caffeate O-methyltransferase activity; INVOLVED IN: lignin biosynthetic process, flavonol biosynthetic process; LOCATED IN: cytosol, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G77520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 420.0) & (original description: no original description)","protein_coding" "PSME_00030905-RA","No alias","Pseudotsuga menziesii","(at1g60420 : 388.0) Reduce transmission through pollen.; DC1 domain-containing protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: response to cadmium ion, pollen tube growth, pollen tube guidance; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), C1-like (InterPro:IPR011424), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: protein kinase C-like zinc finger protein (TAIR:AT4G31240.2); Has 6688 Blast hits to 3903 proteins in 794 species: Archae - 4; Bacteria - 4185; Metazoa - 634; Fungi - 4; Plants - 553; Viruses - 0; Other Eukaryotes - 1308 (source: NCBI BLink). & (reliability: 776.0) & (original description: no original description)","protein_coding" "PSME_00030999-RA","No alias","Pseudotsuga menziesii","(at5g52060 : 88.2) A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.; BCL-2-associated athanogene 1 (BAG1); INVOLVED IN: regulation of apoptosis, apoptosis; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Apoptosis regulator, Bcl-2 protein, BAG (InterPro:IPR003103), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: BCL-2-associated athanogene 3 (TAIR:AT5G07220.1); Has 385 Blast hits to 385 proteins in 61 species: Archae - 0; Bacteria - 4; Metazoa - 126; Fungi - 8; Plants - 222; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). & (reliability: 176.4) & (original description: no original description)","protein_coding" "PSME_00031034-RA","No alias","Pseudotsuga menziesii","(at5g55300 : 588.0) Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. Functions in stem cell maintenance at all stages of shoot and floral meristems and in the regulation of gene silencing.; DNA topoisomerase I alpha (TOP1ALPHA); FUNCTIONS IN: protein binding, DNA topoisomerase type I activity; INVOLVED IN: in 8 processes; LOCATED IN: chromosome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499); BEST Arabidopsis thaliana protein match is: DNA topoisomerase 1 beta (TAIR:AT5G55310.1). & (p93119|top1_dauca : 510.0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) - Daucus carota (Carrot) & (reliability: 1176.0) & (original description: no original description)","protein_coding" "PSME_00031051-RA","No alias","Pseudotsuga menziesii","(at1g70290 : 150.0) Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants.; trehalose-6-phosphatase synthase S8 (TPS8); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: trehalose biosynthetic process, metabolic process; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-phosphatase/synthase 9 (TAIR:AT1G23870.1); Has 4767 Blast hits to 4700 proteins in 1027 species: Archae - 58; Bacteria - 2753; Metazoa - 215; Fungi - 657; Plants - 620; Viruses - 0; Other Eukaryotes - 464 (source: NCBI BLink). & (reliability: 300.0) & (original description: no original description)","protein_coding" "PSME_00031116-RA","No alias","Pseudotsuga menziesii","(at5g67270 : 101.0) encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.; end binding protein 1C (EB1C); CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), EB1, C-terminal (InterPro:IPR004953); BEST Arabidopsis thaliana protein match is: microtubule end binding protein EB1A (TAIR:AT3G47690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 202.0) & (original description: no original description)","protein_coding" "PSME_00031185-RA","No alias","Pseudotsuga menziesii","(at2g21620 : 117.0) Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment.; RD2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to desiccation, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G11930.1); Has 1098 Blast hits to 1097 proteins in 198 species: Archae - 70; Bacteria - 241; Metazoa - 121; Fungi - 60; Plants - 588; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description)","protein_coding" "PSME_00031248-RA","No alias","Pseudotsuga menziesii","(at5g65550 : 275.0) UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT5G49690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q43716|ufog_pethy : 253.0) Anthocyanidin 3-O-glucosyltransferase (EC 2.4.1.115) (Flavonol 3-O-glucosyltransferase) (UDP-glucose flavonoid 3-O-glucosyltransferase) (Anthocyanin rhamnosyl transferase) - Petunia hybrida (Petunia) & (reliability: 518.0) & (original description: no original description)","protein_coding" "PSME_00031475-RA","No alias","Pseudotsuga menziesii","(at5g63840 : 107.0) radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme.; RADIAL SWELLING 3 (RSW3); FUNCTIONS IN: glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to cadmium ion, cellulose biosynthetic process, defense response to bacterium, unidimensional cell growth; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322); BEST Arabidopsis thaliana protein match is: heteroglycan glucosidase 1 (TAIR:AT3G23640.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 214.0) & (original description: no original description)","protein_coding" "PSME_00031661-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00031686-RA","No alias","Pseudotsuga menziesii","(p22195|per1_arahy : 352.0) Cationic peroxidase 1 precursor (EC 1.11.1.7) (PNPC1) - Arachis hypogaea (Peanut) & (at5g05340 : 350.0) Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G58400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 700.0) & (original description: no original description)","protein_coding" "PSME_00032000-RA","No alias","Pseudotsuga menziesii","(at1g09560 : 215.0) germin-like protein (GLP5); germin-like protein 5 (GLP5); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: response to cold; LOCATED IN: cell wall, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 10 (TAIR:AT3G62020.1); Has 1766 Blast hits to 1756 proteins in 200 species: Archae - 0; Bacteria - 219; Metazoa - 1; Fungi - 67; Plants - 1458; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). & (q9spv5|nec1_nicpl : 211.0) Nectarin-1 precursor (EC 1.15.1.1) (Superoxide dismutase [Mn]) - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (reliability: 396.0) & (original description: no original description)","protein_coding" "PSME_00032037-RA","No alias","Pseudotsuga menziesii","(at3g03740 : 253.0) BTB-POZ and MATH domain 4 (BPM4); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 5789 Blast hits to 5682 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 3860; Fungi - 138; Plants - 1466; Viruses - 48; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 468.0) & (original description: no original description)","protein_coding" "PSME_00032199-RA","No alias","Pseudotsuga menziesii","(at4g12420 : 542.0) Encodes a protein of unknown function involved in directed root tip growth. It is a member of 19-member gene family and is distantly related structurally to the multiple-copper oxidases ascorbate oxidase and laccase, though it lacks the copper-binding domains. The protein is glycosylated and GPI-anchored. It is localized to the plasma membrane and the cell wall. The gene is expressed most strongly in expanding tissues.; SKU5; FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: cell tip growth; LOCATED IN: plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 2 (TAIR:AT5G51480.1). & (q00624|aso_brana : 309.0) L-ascorbate oxidase homolog precursor (EC 1.10.3.3) (Ascorbase) - Brassica napus (Rape) & (reliability: 1084.0) & (original description: no original description)","protein_coding" "PSME_00032216-RA","No alias","Pseudotsuga menziesii","(at4g01220 : 86.7) Nucleotide-diphospho-sugar transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: rhamnogalacturonan xylosyltransferase 2 (TAIR:AT4G01750.1); Has 275 Blast hits to 271 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 259; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). & (reliability: 173.4) & (original description: no original description)","protein_coding" "PSME_00032217-RA","No alias","Pseudotsuga menziesii","(at1g64890 : 214.0) Major facilitator superfamily protein; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G04570.1); Has 1088 Blast hits to 1079 proteins in 365 species: Archae - 17; Bacteria - 560; Metazoa - 42; Fungi - 5; Plants - 247; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink). & (reliability: 428.0) & (original description: no original description)","protein_coding" "PSME_00032273-RA","No alias","Pseudotsuga menziesii","(at1g36160 : 105.0) Encodes acetyl-CoA carboxylase. Mutant displays uncoordinated cell divisions which are enhanced by cytokinins. Mutant also has aberrant organization of the apical region in the embryo and abnormal root and shoot development. Essential for very long chain fatty acid elongation.; acetyl-CoA carboxylase 1 (ACC1); CONTAINS InterPro DOMAIN/s: Acetyl-coenzyme A carboxyltransferase, N-terminal (InterPro:IPR011762), Carboxyl transferase (InterPro:IPR000022), Biotin/lipoyl attachment (InterPro:IPR000089), Carbamoyl phosphate synthase, large subunit, N-terminal (InterPro:IPR005481), PreATP-grasp-like fold (InterPro:IPR016185), ATP-grasp fold (InterPro:IPR011761), Biotin carboxylase, C-terminal (InterPro:IPR005482), Single hybrid motif (InterPro:IPR011053), Carbamoyl phosphate synthetase, large subunit, ATP-binding (InterPro:IPR005479), Acetyl-CoA carboxylase, central region (InterPro:IPR013537), Biotin carboxylation domain (InterPro:IPR011764), Biotin-binding site (InterPro:IPR001882), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Acetyl-coenzyme A carboxyltransferase, C-terminal (InterPro:IPR011763), Pre-ATP-grasp fold (InterPro:IPR013817), Rudiment single hybrid motif (InterPro:IPR011054); BEST Arabidopsis thaliana protein match is: acetyl-CoA carboxylase 2 (TAIR:AT1G36180.1). & (reliability: 210.0) & (original description: no original description)","protein_coding" "PSME_00032502-RA","No alias","Pseudotsuga menziesii","(at1g12570 : 436.0) Glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: alcohol metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: Glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT5G51950.1); Has 10555 Blast hits to 10382 proteins in 1112 species: Archae - 4; Bacteria - 3926; Metazoa - 806; Fungi - 1507; Plants - 299; Viruses - 12; Other Eukaryotes - 4001 (source: NCBI BLink). & (reliability: 852.0) & (original description: no original description)","protein_coding" "PSME_00032590-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00032733-RA","No alias","Pseudotsuga menziesii","(at1g26560 : 362.0) beta glucosidase 40 (BGLU40); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: apoplast, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 41 (TAIR:AT5G54570.1); Has 11482 Blast hits to 11079 proteins in 1478 species: Archae - 142; Bacteria - 7937; Metazoa - 716; Fungi - 201; Plants - 1474; Viruses - 0; Other Eukaryotes - 1012 (source: NCBI BLink). & (p29736|myra_sinal : 266.0) Myrosinase MA1 (EC 3.2.1.147) (Sinigrinase) (Thioglucosidase) - Sinapis alba (White mustard) (Brassica hirta) & (reliability: 724.0) & (original description: no original description)","protein_coding" "PSME_00032780-RA","No alias","Pseudotsuga menziesii","(at1g23460 : 249.0) Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626), Glycoside hydrolase, family 28 (InterPro:IPR000743); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G70500.1); Has 4300 Blast hits to 4283 proteins in 531 species: Archae - 4; Bacteria - 1235; Metazoa - 14; Fungi - 1418; Plants - 1493; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). & (p48978|pglr_maldo : 226.0) Polygalacturonase precursor (EC 3.2.1.15) (PG) (Pectinase) - Malus domestica (Apple) (Malus sylvestris) & (reliability: 498.0) & (original description: no original description)","protein_coding" "PSME_00032789-RA","No alias","Pseudotsuga menziesii","(at1g22370 : 370.0) UDP-glucosyl transferase 85A5 (UGT85A5); FUNCTIONS IN: transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 85A2 (TAIR:AT1G22360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q43641|ufog_solme : 194.0) Anthocyanidin 3-O-glucosyltransferase (EC 2.4.1.115) (Flavonol 3-O-glucosyltransferase) (UDP-glucose flavonoid 3-O-glucosyltransferase) - Solanum melongena (Eggplant) (Aubergine) & (reliability: 724.0) & (original description: no original description)","protein_coding" "PSME_00032980-RA","No alias","Pseudotsuga menziesii"," (original description: no original description)","protein_coding" "PSME_00033222-RA","No alias","Pseudotsuga menziesii","(at3g48090 : 124.0) Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases.; enhanced disease susceptibility 1 (EDS1); CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G48080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 232.0) & (original description: no original description)","protein_coding" "PSME_00033280-RA","No alias","Pseudotsuga menziesii","(at3g06720 : 736.0) Encodes importin alpha involved in nuclear import.; AT-IMP; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: cytosol, nuclear envelope, nucleolus, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding domain (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 2 (TAIR:AT4G16143.2); Has 4059 Blast hits to 2974 proteins in 281 species: Archae - 4; Bacteria - 22; Metazoa - 1537; Fungi - 665; Plants - 1109; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink). & (q71vm4|ima1a_orysa : 701.0) Importin alpha-1a subunit - Oryza sativa (Rice) & (reliability: 1472.0) & (original description: no original description)","protein_coding" "PSME_00033357-RA","No alias","Pseudotsuga menziesii","(at2g40370 : 588.0) putative laccase, a member of laccase family of genes (17 members in Arabidopsis).; laccase 5 (LAC5); FUNCTIONS IN: laccase activity; INVOLVED IN: response to copper ion; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 12 (TAIR:AT5G05390.1); Has 10120 Blast hits to 8186 proteins in 1337 species: Archae - 37; Bacteria - 4008; Metazoa - 431; Fungi - 3685; Plants - 1575; Viruses - 0; Other Eukaryotes - 384 (source: NCBI BLink). & (p14133|aso_cucsa : 205.0) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase) (ASO) - Cucumis sativus (Cucumber) & (reliability: 1176.0) & (original description: no original description)","protein_coding" "PSME_00033456-RA","No alias","Pseudotsuga menziesii","(at4g02750 : 197.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). & (q76c99|rf1_orysa : 81.3) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 394.0) & (original description: no original description)","protein_coding" "PSME_00033557-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00033814-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00033832-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00033910-RA","No alias","Pseudotsuga menziesii","(at2g05160 : 306.0) CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G52980.1); Has 286 Blast hits to 218 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). & (reliability: 612.0) & (original description: no original description)","protein_coding" "PSME_00034030-RA","No alias","Pseudotsuga menziesii","(at1g80490 : 412.0) TOPLESS-related 1 (TPR1); INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: cytosol; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT1G15750.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 824.0) & (original description: no original description)","protein_coding" "PSME_00034050-RA","No alias","Pseudotsuga menziesii","(at5g36930 : 102.0) Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G17680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 199.6) & (original description: no original description)","protein_coding" "PSME_00034054-RA","No alias","Pseudotsuga menziesii","(at1g62200 : 193.0) Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 2 (TAIR:AT2G02040.1); Has 8090 Blast hits to 7669 proteins in 1476 species: Archae - 0; Bacteria - 3978; Metazoa - 789; Fungi - 491; Plants - 2227; Viruses - 0; Other Eukaryotes - 605 (source: NCBI BLink). & (reliability: 374.0) & (original description: no original description)","protein_coding" "PSME_00034127-RA","No alias","Pseudotsuga menziesii"," (original description: no original description)","protein_coding" "PSME_00034130-RA","No alias","Pseudotsuga menziesii","(at3g49142 : 170.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G33990.1). & (reliability: 310.0) & (original description: no original description)","protein_coding" "PSME_00034162-RA","No alias","Pseudotsuga menziesii","(at3g10210 : 119.0) SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G35750.1); Has 394 Blast hits to 394 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 260; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). & (reliability: 238.0) & (original description: no original description)","protein_coding" "PSME_00034404-RA","No alias","Pseudotsuga menziesii","(at4g16330 : 131.0) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: flavonoid biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT2G38240.1). & (q05964|fl3h_diaca : 98.6) Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9) (Flavonone-3-hydroxylase) (F3H) (FHT) - Dianthus caryophyllus (Carnation) (Clove pink) & (reliability: 262.0) & (original description: no original description)","protein_coding" "PSME_00034444-RA","No alias","Pseudotsuga menziesii","(at5g20850 : 414.0) Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation.; RAS associated with diabetes protein 51 (RAD51); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, double-strand break repair, response to gamma radiation, response to radiation, DNA metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), DNA repair Rad51/transcription factor NusA, alpha-helical (InterPro:IPR010995), DNA recombination and repair protein, RecA-like (InterPro:IPR016467), DNA recombination/repair protein Rad51 (InterPro:IPR011941), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), ATPase, AAA+ type, core (InterPro:IPR003593), DNA recombination and repair protein Rad51, C-terminal (InterPro:IPR013632), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587); BEST Arabidopsis thaliana protein match is: DNA repair (Rad51) family protein (TAIR:AT3G22880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q67eu8|r51a1_maize : 411.0) DNA repair protein RAD51 homolog A (Rad51-like protein A) (RAD51A) (ZmRAD51a) - Zea mays (Maize) & (reliability: 828.0) & (original description: no original description)","protein_coding" "PSME_00034509-RA","No alias","Pseudotsuga menziesii","(at1g08750 : 121.0) Peptidase C13 family; FUNCTIONS IN: GPI-anchor transamidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: alpha-vacuolar processing enzyme (TAIR:AT2G25940.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 242.0) & (original description: no original description)","protein_coding" "PSME_00034520-RA","No alias","Pseudotsuga menziesii","(q71vm4|ima1a_orysa : 482.0) Importin alpha-1a subunit - Oryza sativa (Rice) & (at1g09270 : 470.0) Protein interacts with Agrobacterium proteins VirD2 and VirE2.; importin alpha isoform 4 (IMPA-4); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, symbiont intracellular protein transport in host, host response to induction by symbiont of tumor, nodule or growth in host; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 1 (TAIR:AT3G06720.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 940.0) & (original description: no original description)","protein_coding" "PSME_00034574-RA","No alias","Pseudotsuga menziesii","(at4g11050 : 246.0) glycosyl hydrolase 9C3 (GH9C3); FUNCTIONS IN: carbohydrate binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Carbohydrate-binding (InterPro:IPR008965), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701), Carbohydrate binding domain CBM49 (InterPro:IPR019028); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9C2 (TAIR:AT1G64390.1); Has 1895 Blast hits to 1880 proteins in 271 species: Archae - 2; Bacteria - 695; Metazoa - 181; Fungi - 19; Plants - 923; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). & (q6l4i2|gun15_orysa : 219.0) Endoglucanase 15 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 15) - Oryza sativa (Rice) & (reliability: 492.0) & (original description: no original description)","protein_coding" "PSME_00034741-RA","No alias","Pseudotsuga menziesii","(q06942|fl3h_maldo : 332.0) Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9) (Flavonone-3-hydroxylase) (F3H) (FHT) - Malus domestica (Apple) (Malus sylvestris) & (at3g51240 : 303.0) Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis.; flavanone 3-hydroxylase (F3H); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G10490.1). & (reliability: 606.0) & (original description: no original description)","protein_coding" "PSME_00034857-RA","No alias","Pseudotsuga menziesii","(q8lkz1|nork_pea : 91.3) Nodulation receptor kinase precursor (EC 2.7.11.1) - Pisum sativum (Garden pea) & (at2g28970 : 89.4) Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G28990.1); Has 169810 Blast hits to 124514 proteins in 4517 species: Archae - 105; Bacteria - 13883; Metazoa - 45515; Fungi - 10149; Plants - 80466; Viruses - 403; Other Eukaryotes - 19289 (source: NCBI BLink). & (reliability: 163.2) & (original description: no original description)","protein_coding" "PSME_00034968-RA","No alias","Pseudotsuga menziesii","(o49923|adk_phypa : 99.4) Adenosine kinase (EC 2.7.1.20) (AK) (Adenosine 5'-phosphotransferase) - Physcomitrella patens (Moss) & (at5g03300 : 94.7) Encodes adenosine kinase 2 (ADK2), a typical, constitutively expressed housekeeping enzyme. Shows a high sequence identity with ADK1. Involved in salvage synthesis of adenylates and methyl recycling. Enzyme activity is substantially inhibited in roots, siliques and dry seeds by an unknown compound. May contribute to cytokinin interconversion.; adenosine kinase 2 (ADK2); FUNCTIONS IN: adenosine kinase activity, copper ion binding, kinase activity; INVOLVED IN: adenosine salvage; LOCATED IN: plasma membrane; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173), Adenosine kinase (InterPro:IPR001805); BEST Arabidopsis thaliana protein match is: adenosine kinase 1 (TAIR:AT3G09820.1); Has 9730 Blast hits to 9724 proteins in 1887 species: Archae - 143; Bacteria - 5874; Metazoa - 382; Fungi - 207; Plants - 398; Viruses - 0; Other Eukaryotes - 2726 (source: NCBI BLink). & (reliability: 189.4) & (original description: no original description)","protein_coding" "PSME_00035008-RA","No alias","Pseudotsuga menziesii","(at1g16670 : 114.0) Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G09010.1); Has 119178 Blast hits to 117668 proteins in 4361 species: Archae - 113; Bacteria - 13232; Metazoa - 43958; Fungi - 10262; Plants - 33662; Viruses - 406; Other Eukaryotes - 17545 (source: NCBI BLink). & (reliability: 228.0) & (original description: no original description)","protein_coding" "PSME_00035059-RA","No alias","Pseudotsuga menziesii","(at3g26100 : 370.0) Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G15430.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 740.0) & (original description: no original description)","protein_coding" "PSME_00035109-RA","No alias","Pseudotsuga menziesii","(at5g10100 : 139.0) Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: catalytic activity, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: embryo, root; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G65140.1). & (reliability: 278.0) & (original description: no original description)","protein_coding" "PSME_00035290-RA","No alias","Pseudotsuga menziesii","(at3g03740 : 221.0) BTB-POZ and MATH domain 4 (BPM4); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 5789 Blast hits to 5682 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 3860; Fungi - 138; Plants - 1466; Viruses - 48; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 410.0) & (original description: no original description)","protein_coding" "PSME_00035475-RA","No alias","Pseudotsuga menziesii","(at2g44480 : 144.0) beta glucosidase 17 (BGLU17); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: stem, hypocotyl, sepal, male gametophyte, root; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 15 (TAIR:AT2G44450.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p49235|bglc_maize : 127.0) Beta-glucosidase, chloroplast precursor (EC 3.2.1.21) (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) - Zea mays (Maize) & (reliability: 260.0) & (original description: no original description)","protein_coding" "PSME_00035561-RA","No alias","Pseudotsuga menziesii","(at1g60420 : 405.0) Reduce transmission through pollen.; DC1 domain-containing protein; FUNCTIONS IN: oxidoreductase activity, antioxidant activity; INVOLVED IN: response to cadmium ion, pollen tube growth, pollen tube guidance; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), C1-like (InterPro:IPR011424), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: protein kinase C-like zinc finger protein (TAIR:AT4G31240.2); Has 6688 Blast hits to 3903 proteins in 794 species: Archae - 4; Bacteria - 4185; Metazoa - 634; Fungi - 4; Plants - 553; Viruses - 0; Other Eukaryotes - 1308 (source: NCBI BLink). & (reliability: 810.0) & (original description: no original description)","protein_coding" "PSME_00035563-RA","No alias","Pseudotsuga menziesii","(at4g02750 : 132.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). & (reliability: 264.0) & (original description: no original description)","protein_coding" "PSME_00035588-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00035612-RA","No alias","Pseudotsuga menziesii","(at4g30080 : 576.0) Involved in root cap cell differentiation. Gene expression is regulated by mir160.Located in the nucleus.; auxin response factor 16 (ARF16); CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 10 (TAIR:AT2G28350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1152.0) & (original description: no original description)","protein_coding" "PSME_00035624-RA","No alias","Pseudotsuga menziesii","(at2g20610 : 180.0) Confers auxin overproduction. Mutants have an over-proliferation of lateral roots. Encodes a C-S lyase involved in converting S-alkylthiohydroximate to thiohydroximate in glucosinolate biosynthesis.; SUPERROOT 1 (SUR1); FUNCTIONS IN: S-alkylthiohydroximate lyase activity, carbon-sulfur lyase activity, transaminase activity; INVOLVED IN: regulation of cell growth by extracellular stimulus, glucosinolate biosynthetic process, adventitious root development, indoleacetic acid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Tyrosine transaminase (InterPro:IPR021178), Tyrosine/nicotianamine aminotransferase (InterPro:IPR005958), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Tyrosine transaminase family protein (TAIR:AT4G28420.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 360.0) & (original description: no original description)","protein_coding" "PSME_00035631-RA","No alias","Pseudotsuga menziesii","(at5g46050 : 129.0) Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies.; peptide transporter 3 (PTR3); FUNCTIONS IN: dipeptide transporter activity, tripeptide transporter activity, transporter activity; INVOLVED IN: in 12 processes; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G46040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 258.0) & (original description: no original description)","protein_coding" "PSME_00035669-RA","No alias","Pseudotsuga menziesii","(at1g29880 : 86.3) glycyl-tRNA synthetase / glycine--tRNA ligase; FUNCTIONS IN: glycine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: response to cadmium ion, glycyl-tRNA aminoacylation; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Glycyl-tRNA synthetase, alpha2 dimer (InterPro:IPR002315), S15/NS1, RNA-binding (InterPro:IPR009068), Glycyl-tRNA synthetase, alpha2 dimer, C-terminal (InterPro:IPR018160), Anticodon-binding (InterPro:IPR004154), WHEP-TRS (InterPro:IPR000738), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: tRNA synthetase class II (G, H, P and S) family protein (TAIR:AT1G29870.1); Has 6392 Blast hits to 4464 proteins in 1181 species: Archae - 269; Bacteria - 3324; Metazoa - 242; Fungi - 171; Plants - 75; Viruses - 0; Other Eukaryotes - 2311 (source: NCBI BLink). & (reliability: 172.6) & (original description: no original description)","protein_coding" "PSME_00035817-RA","No alias","Pseudotsuga menziesii","(at5g60980 : 275.0) Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT3G25150.1); Has 36196 Blast hits to 15965 proteins in 1132 species: Archae - 9; Bacteria - 13386; Metazoa - 10288; Fungi - 3119; Plants - 4760; Viruses - 542; Other Eukaryotes - 4092 (source: NCBI BLink). & (reliability: 550.0) & (original description: no original description)","protein_coding" "PSME_00035860-RA","No alias","Pseudotsuga menziesii","(at5g35550 : 159.0) TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.; TRANSPARENT TESTA 2 (TT2); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 5 (TAIR:AT3G13540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p10290|mybc_maize : 157.0) Anthocyanin regulatory C1 protein - Zea mays (Maize) & (reliability: 318.0) & (original description: no original description)","protein_coding" "PSME_00035982-RA","No alias","Pseudotsuga menziesii","(at1g53440 : 245.0) Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G53430.1); Has 190921 Blast hits to 136069 proteins in 4848 species: Archae - 114; Bacteria - 18757; Metazoa - 52699; Fungi - 11122; Plants - 85531; Viruses - 458; Other Eukaryotes - 22240 (source: NCBI BLink). & (q8l4h4|nork_medtr : 177.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 490.0) & (original description: no original description)","protein_coding" "PSME_00036090-RA","No alias","Pseudotsuga menziesii","(at5g53480 : 1155.0) ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, chloroplast, nuclear pore, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G08947.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 2310.0) & (original description: no original description)","protein_coding" "PSME_00036096-RA","No alias","Pseudotsuga menziesii","(at5g14420 : 99.4) RING domain ligase2 (RGLG2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase1 (TAIR:AT3G01650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 198.8) & (original description: no original description)","protein_coding" "PSME_00036120-RA","No alias","Pseudotsuga menziesii","(at5g46040 : 222.0) Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport, response to nematode; LOCATED IN: membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: peptide transporter 3 (TAIR:AT5G46050.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 416.0) & (original description: no original description)","protein_coding" "PSME_00036126-RA","No alias","Pseudotsuga menziesii","(at5g55300 : 405.0) Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. Functions in stem cell maintenance at all stages of shoot and floral meristems and in the regulation of gene silencing.; DNA topoisomerase I alpha (TOP1ALPHA); FUNCTIONS IN: protein binding, DNA topoisomerase type I activity; INVOLVED IN: in 8 processes; LOCATED IN: chromosome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499); BEST Arabidopsis thaliana protein match is: DNA topoisomerase 1 beta (TAIR:AT5G55310.1). & (p93119|top1_dauca : 344.0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) - Daucus carota (Carrot) & (reliability: 810.0) & (original description: no original description)","protein_coding" "PSME_00036252-RA","No alias","Pseudotsuga menziesii","(at2g25760 : 630.0) Protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT3G13670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1260.0) & (original description: no original description)","protein_coding" "PSME_00036307-RA","No alias","Pseudotsuga menziesii","(at1g03220 : 310.0) Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: response to salt stress; LOCATED IN: cell wall, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G03230.1); Has 1398 Blast hits to 1391 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1396; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). & (p13917|7sb1_soybn : 163.0) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic 7S globulin high kDa subunit; Basic 7S globulin low kDa subunit] - Glycine max (Soybean) & (reliability: 620.0) & (original description: no original description)","protein_coding" "PSME_00036320-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00036451-RA","No alias","Pseudotsuga menziesii","(at1g11050 : 506.0) Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: receptor-like kinase in in flowers 3 (TAIR:AT2G48010.1); Has 115297 Blast hits to 114175 proteins in 4324 species: Archae - 104; Bacteria - 13350; Metazoa - 42303; Fungi - 9816; Plants - 32853; Viruses - 335; Other Eukaryotes - 16536 (source: NCBI BLink). & (q8l4h4|nork_medtr : 229.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 1012.0) & (original description: no original description)","protein_coding" "PSME_00036548-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00036584-RA","No alias","Pseudotsuga menziesii","(at5g16150 : 298.0) Encodes a putative plastidic glucose transporter.; plastidic GLC translocator (PGLCT); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: response to trehalose stimulus; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G05030.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 596.0) & (original description: no original description)","protein_coding" "PSME_00036610-RA","No alias","Pseudotsuga menziesii","(at4g37080 : 139.0) Protein of unknown function, DUF547; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G42690.2). & (reliability: 278.0) & (original description: no original description)","protein_coding" "PSME_00036618-RA","No alias","Pseudotsuga menziesii","(at3g05500 : 102.0) Rubber elongation factor protein (REF); INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rubber elongation factor (InterPro:IPR008802); BEST Arabidopsis thaliana protein match is: Rubber elongation factor protein (REF) (TAIR:AT2G47780.1); Has 129 Blast hits to 129 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (q9fra7|y5940_orysa : 94.4) Putative REF/SRPP-like protein Os05g0151300 - Oryza sativa (Rice) & (reliability: 204.0) & (original description: no original description)","protein_coding" "PSME_00036754-RA","No alias","Pseudotsuga menziesii","(at2g39050 : 181.0) hydroxyproline-rich glycoprotein family protein; CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:IPR008997), Ricin B lectin (InterPro:IPR000772); Has 1708 Blast hits to 1449 proteins in 222 species: Archae - 0; Bacteria - 47; Metazoa - 514; Fungi - 386; Plants - 615; Viruses - 5; Other Eukaryotes - 141 (source: NCBI BLink). & (reliability: 362.0) & (original description: no original description)","protein_coding" "PSME_00036830-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00036965-RA","No alias","Pseudotsuga menziesii","(at1g76700 : 182.0) DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT1G21080.1); Has 22668 Blast hits to 22554 proteins in 3188 species: Archae - 168; Bacteria - 9129; Metazoa - 3918; Fungi - 2179; Plants - 2304; Viruses - 20; Other Eukaryotes - 4950 (source: NCBI BLink). & (reliability: 364.0) & (original description: no original description)","protein_coding" "PSME_00037049-RA","No alias","Pseudotsuga menziesii","(at3g58570 : 405.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G42520.1); Has 86488 Blast hits to 59724 proteins in 3531 species: Archae - 886; Bacteria - 35070; Metazoa - 23291; Fungi - 6787; Plants - 8100; Viruses - 385; Other Eukaryotes - 11969 (source: NCBI BLink). & (p46942|db10_nicsy : 196.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 810.0) & (original description: no original description)","protein_coding" "PSME_00037181-RA","No alias","Pseudotsuga menziesii","(at5g63190 : 738.0) MA3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MA3 domain-containing protein (TAIR:AT3G48390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1476.0) & (original description: no original description)","protein_coding" "PSME_00037331-RA","No alias","Pseudotsuga menziesii","(at4g00100 : 136.0) Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development; ribosomal protein S13A (RPS13A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, trichome morphogenesis, leaf morphogenesis, cytokinesis by cell plate formation; LOCATED IN: cytosolic small ribosomal subunit, nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13/S15, N-terminal (InterPro:IPR012606), Ribosomal protein S15 (InterPro:IPR000589), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: Ribosomal protein S13/S15 (TAIR:AT3G60770.1); Has 1100 Blast hits to 1100 proteins in 416 species: Archae - 259; Bacteria - 0; Metazoa - 343; Fungi - 146; Plants - 139; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink). & (p62302|rs13_soybn : 135.0) 40S ribosomal protein S13 - Glycine max (Soybean) & (reliability: 272.0) & (original description: no original description)","protein_coding" "PSME_00037375-RA","No alias","Pseudotsuga menziesii","(p49237|e13b_maize : 314.0) Glucan endo-1,3-beta-glucosidase, acidic isoform precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) - Zea mays (Maize) & (at4g16260 : 306.0) Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: defense response to fungus, incompatible interaction, response to salt stress; LOCATED IN: cell wall, plasma membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-1,3-glucanase 1 (TAIR:AT3G57270.1); Has 2169 Blast hits to 2154 proteins in 141 species: Archae - 0; Bacteria - 6; Metazoa - 5; Fungi - 22; Plants - 2121; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). & (reliability: 612.0) & (original description: no original description)","protein_coding" "PSME_00037478-RA","No alias","Pseudotsuga menziesii","(at3g54420 : 236.0) encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.; homolog of carrot EP3-3 chitinase (EP3); FUNCTIONS IN: chitinase activity; INVOLVED IN: somatic embryogenesis, plant-type hypersensitive response; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2660 Blast hits to 2432 proteins in 504 species: Archae - 0; Bacteria - 547; Metazoa - 34; Fungi - 178; Plants - 1776; Viruses - 22; Other Eukaryotes - 103 (source: NCBI BLink). & (p29022|chia_maize : 222.0) Endochitinase A precursor (EC 3.2.1.14) (Seed chitinase A) - Zea mays (Maize) & (reliability: 472.0) & (original description: no original description)","protein_coding" "PSME_00037835-RA","No alias","Pseudotsuga menziesii","(at5g67270 : 83.6) encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.; end binding protein 1C (EB1C); CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), EB1, C-terminal (InterPro:IPR004953); BEST Arabidopsis thaliana protein match is: microtubule end binding protein EB1A (TAIR:AT3G47690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 167.2) & (original description: no original description)","protein_coding" "PSME_00038013-RA","No alias","Pseudotsuga menziesii","(at3g61110 : 155.0) Arabidopsis ribosomal protein; ribosomal protein S27 (RS27A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein S27e (InterPro:IPR000592); BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT2G45710.1); Has 1035 Blast hits to 1035 proteins in 379 species: Archae - 136; Bacteria - 0; Metazoa - 447; Fungi - 151; Plants - 149; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink). & (q96564|rs27_horvu : 147.0) 40S ribosomal protein S27 (Manganese efficiency-related protein 1) - Hordeum vulgare (Barley) & (reliability: 310.0) & (original description: no original description)","protein_coding" "PSME_00038127-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00038303-RA","No alias","Pseudotsuga menziesii","(p22195|per1_arahy : 382.0) Cationic peroxidase 1 precursor (EC 1.11.1.7) (PNPC1) - Arachis hypogaea (Peanut) & (at5g05340 : 372.0) Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G58400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 744.0) & (original description: no original description)","protein_coding" "PSME_00038325-RA","No alias","Pseudotsuga menziesii","(at4g36470 : 259.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G11480.1); Has 909 Blast hits to 891 proteins in 125 species: Archae - 0; Bacteria - 69; Metazoa - 9; Fungi - 5; Plants - 730; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink). & (q9fyz9|bamt_antma : 239.0) Benzoate carboxyl methyltransferase (EC 2.1.1.-) (S-adenosyl-L-methionine:benzoic acid carboxyl methyltransferase) - Antirrhinum majus (Garden snapdragon) & (reliability: 468.0) & (original description: no original description)","protein_coding" "PSME_00038402-RA","No alias","Pseudotsuga menziesii","(at5g56750 : 191.0) N-MYC downregulated-like 1 (NDL1); CONTAINS InterPro DOMAIN/s: Pollen specific protein SF21 (InterPro:IPR015511), Ndr (InterPro:IPR004142); BEST Arabidopsis thaliana protein match is: N-MYC downregulated-like 3 (TAIR:AT2G19620.1); Has 776 Blast hits to 775 proteins in 111 species: Archae - 2; Bacteria - 48; Metazoa - 563; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). & (o23969|sf21_helan : 159.0) Pollen-specific protein SF21 - Helianthus annuus (Common sunflower) & (reliability: 364.0) & (original description: no original description)","protein_coding" "PSME_00038405-RA","No alias","Pseudotsuga menziesii","(at1g43710 : 607.0) embryo defective 1075 (emb1075); FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity; INVOLVED IN: cellular amino acid metabolic process, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal-phosphate binding site (InterPro:IPR021115), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 2 (TAIR:AT1G65960.1); Has 3259 Blast hits to 3251 proteins in 995 species: Archae - 187; Bacteria - 1878; Metazoa - 518; Fungi - 211; Plants - 249; Viruses - 11; Other Eukaryotes - 205 (source: NCBI BLink). & (reliability: 1214.0) & (original description: no original description)","protein_coding" "PSME_00038412-RA","No alias","Pseudotsuga menziesii","(at5g02810 : 93.2) PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR7 expression levels. Acts as transcriptional repressor of CCA1 and LHY.; pseudo-response regulator 7 (PRR7); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 3 (TAIR:AT5G60100.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q689g4|prr73_orysa : 87.8) Two-component response regulator-like PRR73 (Pseudo-response regulator 73) (OsPRR73) - Oryza sativa (Rice) & (reliability: 186.4) & (original description: no original description)","protein_coding" "PSME_00038631-RA","No alias","Pseudotsuga menziesii","(q9slx0|ima1b_orysa : 83.6) Importin alpha-1b subunit - Oryza sativa (Rice) & (at4g16143 : 80.9) Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.; importin alpha isoform 2 (IMPA-2); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding domain (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 1 (TAIR:AT3G06720.2); Has 4654 Blast hits to 3364 proteins in 293 species: Archae - 4; Bacteria - 33; Metazoa - 1869; Fungi - 640; Plants - 1336; Viruses - 0; Other Eukaryotes - 772 (source: NCBI BLink). & (reliability: 161.8) & (original description: no original description)","protein_coding" "PSME_00038761-RA","No alias","Pseudotsuga menziesii","(at5g56510 : 87.8) Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.; pumilio 12 (PUM12); FUNCTIONS IN: RNA binding, binding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 7 (TAIR:AT1G78160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 175.6) & (original description: no original description)","protein_coding" "PSME_00038772-RA","No alias","Pseudotsuga menziesii","(at4g23180 : 358.0) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307); cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (CRK10); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (TAIR:AT4G23160.1); Has 124145 Blast hits to 122467 proteins in 4564 species: Archae - 110; Bacteria - 14159; Metazoa - 45299; Fungi - 10862; Plants - 34986; Viruses - 473; Other Eukaryotes - 18256 (source: NCBI BLink). & (q8lkz1|nork_pea : 144.0) Nodulation receptor kinase precursor (EC 2.7.11.1) - Pisum sativum (Garden pea) & (reliability: 716.0) & (original description: no original description)","protein_coding" "PSME_00038810-RA","No alias","Pseudotsuga menziesii","(o49813|olee1_betve : 94.4) Olee1-like protein precursor - Betula verrucosa (White birch) (Betula pendula) & (at4g08685 : 90.1) Encodes a protein, expressed in leaves, with similarity to pollen allergens.; SAH7; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT1G78040.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 180.2) & (original description: no original description)","protein_coding" "PSME_00038834-RA","No alias","Pseudotsuga menziesii","(at1g14570 : 88.6) UBX domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAS (InterPro:IPR006577), Uncharacterised conserved protein UCP037991, UAS, UBX (InterPro:IPR017346), UBX (InterPro:IPR001012), Ubiquitin interacting motif (InterPro:IPR003903), UBA-like (InterPro:IPR009060), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 596 Blast hits to 582 proteins in 180 species: Archae - 0; Bacteria - 6; Metazoa - 214; Fungi - 136; Plants - 152; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink). & (reliability: 177.2) & (original description: no original description)","protein_coding" "PSME_00038886-RA","No alias","Pseudotsuga menziesii","(at1g03250 : 115.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. & (reliability: 230.0) & (original description: no original description)","protein_coding" "PSME_00038893-RA","No alias","Pseudotsuga menziesii","(q9xhg2|fls_maldo : 190.0) Flavonol synthase/flavanone 3-hydroxylase (EC 1.14.11.23) (EC 1.14.11.9) (FLS) - Malus domestica (Apple) (Malus sylvestris) & (at5g08640 : 176.0) Encodes a flavonol synthase that catalyzes formation of flavonols from dihydroflavonols.; flavonol synthase 1 (FLS1); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: flavonol synthase 3 (TAIR:AT5G63590.1). & (reliability: 330.0) & (original description: no original description)","protein_coding" "PSME_00038966-RA","No alias","Pseudotsuga menziesii"," (original description: no original description)","protein_coding" "PSME_00039090-RA","No alias","Pseudotsuga menziesii","(at1g01720 : 226.0) Belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding and abscisic acid. ATAF1 attentuates ABA signaling and sythesis. Mutants are hyposensitive to ABA.; ATAF1; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 32 (TAIR:AT1G77450.1); Has 3043 Blast hits to 3037 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3043; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (q52qh4|nac68_orysa : 224.0) NAC domain-containing protein 68 (ONAC068) - Oryza sativa (Rice) & (reliability: 412.0) & (original description: no original description)","protein_coding" "PSME_00039151-RA","No alias","Pseudotsuga menziesii","(at5g35550 : 114.0) TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.; TRANSPARENT TESTA 2 (TT2); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 5 (TAIR:AT3G13540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p20026|myb1_horvu : 107.0) Myb-related protein Hv1 - Hordeum vulgare (Barley) & (reliability: 214.0) & (original description: no original description)","protein_coding" "PSME_00039163-RA","No alias","Pseudotsuga menziesii","(at4g23340 : 140.0) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G51310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p93771|gaox1_orysa : 111.0) Gibberellin 20 oxidase 1 (EC 1.14.11.-) (Gibberellin C-20 oxidase 1) (GA 20-oxidase 1) (Os20ox) - Oryza sativa (Rice) & (reliability: 280.0) & (original description: no original description)","protein_coding" "PSME_00039542-RA","No alias","Pseudotsuga menziesii","(at2g26330 : 355.0) Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes.; ERECTA (ER); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ERECTA-like 2 (TAIR:AT5G07180.1); Has 231155 Blast hits to 140492 proteins in 4172 species: Archae - 144; Bacteria - 21921; Metazoa - 82313; Fungi - 10847; Plants - 87687; Viruses - 446; Other Eukaryotes - 27797 (source: NCBI BLink). & (p93194|rpk1_iponi : 114.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 710.0) & (original description: no original description)","protein_coding" "PSME_00039828-RA","No alias","Pseudotsuga menziesii","(at5g67270 : 119.0) encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.; end binding protein 1C (EB1C); CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), EB1, C-terminal (InterPro:IPR004953); BEST Arabidopsis thaliana protein match is: microtubule end binding protein EB1A (TAIR:AT3G47690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 238.0) & (original description: no original description)","protein_coding" "PSME_00039897-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00039911-RA","No alias","Pseudotsuga menziesii","(at2g20750 : 117.0) member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio); expansin B1 (EXPB1); INVOLVED IN: plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B3 (TAIR:AT4G28250.1); Has 2076 Blast hits to 2069 proteins in 143 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 9; Plants - 2024; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). & (q5w6z9|exb18_orysa : 117.0) Expansin-B18 precursor (OsEXPB18) (Beta-expansin-18) (OsaEXPb1.15) - Oryza sativa (Rice) & (reliability: 234.0) & (original description: no original description)","protein_coding" "PSME_00039959-RA","No alias","Pseudotsuga menziesii","(at5g03760 : 436.0) encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium and the host plant. 3' UTR is involved in transcriptional regulation and the gene is expressed in the elongation zone of the root.; ATCSLA09; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: cellulose synthase-like A02 (TAIR:AT5G22740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 872.0) & (original description: no original description)","protein_coding" "PSME_00040022-RA","No alias","Pseudotsuga menziesii","(at5g52060 : 189.0) A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.; BCL-2-associated athanogene 1 (BAG1); INVOLVED IN: regulation of apoptosis, apoptosis; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Apoptosis regulator, Bcl-2 protein, BAG (InterPro:IPR003103), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: BCL-2-associated athanogene 3 (TAIR:AT5G07220.1); Has 385 Blast hits to 385 proteins in 61 species: Archae - 0; Bacteria - 4; Metazoa - 126; Fungi - 8; Plants - 222; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). & (reliability: 378.0) & (original description: no original description)","protein_coding" "PSME_00040058-RA","No alias","Pseudotsuga menziesii","(at5g57090 : 363.0) Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of PIN2 polarity.; ETHYLENE INSENSITIVE ROOT 1 (EIR1); CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT2G01420.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q67ul3|pin1c_orysa : 342.0) Probable auxin efflux carrier component 1c (OsPIN1c) - Oryza sativa (Rice) & (reliability: 726.0) & (original description: no original description)","protein_coding" "PSME_00040091-RA","No alias","Pseudotsuga menziesii","(q6h676|exb11_orysa : 154.0) Expansin-B11 precursor (OsEXPB11) (Beta-expansin-11) (OsaEXPb1.20) - Oryza sativa (Rice) & (at2g20750 : 147.0) member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio); expansin B1 (EXPB1); INVOLVED IN: plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B3 (TAIR:AT4G28250.1); Has 2076 Blast hits to 2069 proteins in 143 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 9; Plants - 2024; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). & (reliability: 294.0) & (original description: no original description)","protein_coding" "PSME_00040142-RA","No alias","Pseudotsuga menziesii","(at3g60860 : 341.0) SEC7-like guanine nucleotide exchange family protein; FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: regulation of ARF protein signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT1G01960.1); Has 2962 Blast hits to 2694 proteins in 246 species: Archae - 0; Bacteria - 33; Metazoa - 1475; Fungi - 672; Plants - 315; Viruses - 0; Other Eukaryotes - 467 (source: NCBI BLink). & (reliability: 682.0) & (original description: no original description)","protein_coding" "PSME_00040325-RA","No alias","Pseudotsuga menziesii","(at1g60390 : 85.5) polygalacturonase 1 (PG1); FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: polygalacturonase 2 (TAIR:AT1G70370.2); Has 3094 Blast hits to 2364 proteins in 384 species: Archae - 8; Bacteria - 697; Metazoa - 473; Fungi - 328; Plants - 614; Viruses - 4; Other Eukaryotes - 970 (source: NCBI BLink). & (reliability: 171.0) & (original description: no original description)","protein_coding" "PSME_00040485-RA","No alias","Pseudotsuga menziesii","(at5g63840 : 132.0) radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme.; RADIAL SWELLING 3 (RSW3); FUNCTIONS IN: glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to cadmium ion, cellulose biosynthetic process, defense response to bacterium, unidimensional cell growth; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322); BEST Arabidopsis thaliana protein match is: heteroglycan glucosidase 1 (TAIR:AT3G23640.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 264.0) & (original description: no original description)","protein_coding" "PSME_00040564-RA","No alias","Pseudotsuga menziesii","(at1g80160 : 197.0) Lactoylglutathione lyase / glyoxalase I family protein; FUNCTIONS IN: lactoylglutathione lyase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Lactoylglutathione lyase / glyoxalase I family protein (TAIR:AT1G15380.2); Has 148 Blast hits to 148 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 394.0) & (original description: no original description)","protein_coding" "PSME_00040589-RA","No alias","Pseudotsuga menziesii","(at1g03250 : 85.9) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. & (reliability: 171.8) & (original description: no original description)","protein_coding" "PSME_00040705-RA","No alias","Pseudotsuga menziesii","(at5g14230 : 456.0) CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink). & (reliability: 912.0) & (original description: no original description)","protein_coding" "PSME_00040718-RA","No alias","Pseudotsuga menziesii","(at5g14700 : 144.0) NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G23910.1); Has 4116 Blast hits to 4108 proteins in 752 species: Archae - 4; Bacteria - 797; Metazoa - 69; Fungi - 490; Plants - 1968; Viruses - 42; Other Eukaryotes - 746 (source: NCBI BLink). & (reliability: 288.0) & (original description: no original description)","protein_coding" "PSME_00040848-RA","No alias","Pseudotsuga menziesii","(q9fxt4|agal_orysa : 278.0) Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase) (Alpha-D-galactoside galactohydrolase) - Oryza sativa (Rice) & (at5g08370 : 263.0) alpha-galactosidase 2 (AGAL2); FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: positive regulation of flower development, leaf morphogenesis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, family 27 (InterPro:IPR002241), Glycoside hydrolase, clan GH-D (InterPro:IPR000111), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: alpha-galactosidase 1 (TAIR:AT5G08380.1); Has 1586 Blast hits to 1573 proteins in 339 species: Archae - 4; Bacteria - 587; Metazoa - 332; Fungi - 271; Plants - 223; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink). & (reliability: 526.0) & (original description: no original description)","protein_coding" "PSME_00040973-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00041091-RA","No alias","Pseudotsuga menziesii","(at1g30220 : 576.0) Inositol transporter presenting conserved extracellular loop domains homologs of plexins/semaphorin/integrin (PSI) domains from animal type I receptors.; inositol transporter 2 (INT2); CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: inositol transporter 4 (TAIR:AT4G16480.1); Has 52249 Blast hits to 41863 proteins in 2438 species: Archae - 698; Bacteria - 26108; Metazoa - 7164; Fungi - 11733; Plants - 4458; Viruses - 2; Other Eukaryotes - 2086 (source: NCBI BLink). & (q41144|stc_ricco : 107.0) Sugar carrier protein C - Ricinus communis (Castor bean) & (reliability: 1152.0) & (original description: no original description)","protein_coding" "PSME_00041148-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00041160-RA","No alias","Pseudotsuga menziesii","(q40588|aso_tobac : 551.0) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase) (ASO) - Nicotiana tabacum (Common tobacco) & (at5g21105 : 541.0) Plant L-ascorbate oxidase; FUNCTIONS IN: oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), L-ascorbate oxidase, plants (InterPro:IPR017760), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: Plant L-ascorbate oxidase (TAIR:AT5G21100.1). & (reliability: 1082.0) & (original description: no original description)","protein_coding" "PSME_00041229-RA","No alias","Pseudotsuga menziesii","(at5g48930 : 486.0) At5g48930 has been shown to encode for the hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase (HCT) both synthesizing and catabolizing the hydroxycinnamoylesters (coumaroyl/caffeoyl shikimate and quinate) involved in the phenylpropanoid pathway. Influence on the accumulation of flavonoids which in turn inhibit auxin transport and reduce plant growth.; hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (HCT); CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G57840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o23917|hcbt2_diaca : 317.0) Anthranilate N-benzoyltransferase protein 2 (EC 2.3.1.144) (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 2) - Dianthus caryophyllus (Carnation) (Clove pink) & (reliability: 972.0) & (original description: no original description)","protein_coding" "PSME_00041261-RA","No alias","Pseudotsuga menziesii","(at1g75660 : 232.0) Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products.; 5'-3' exoribonuclease 3 (XRN3); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: exoribonuclease 2 (TAIR:AT5G42540.1); Has 4264 Blast hits to 3505 proteins in 442 species: Archae - 2; Bacteria - 295; Metazoa - 1361; Fungi - 725; Plants - 751; Viruses - 31; Other Eukaryotes - 1099 (source: NCBI BLink). & (reliability: 464.0) & (original description: no original description)","protein_coding" "PSME_00041404-RA","No alias","Pseudotsuga menziesii","(at5g48930 : 503.0) At5g48930 has been shown to encode for the hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase (HCT) both synthesizing and catabolizing the hydroxycinnamoylesters (coumaroyl/caffeoyl shikimate and quinate) involved in the phenylpropanoid pathway. Influence on the accumulation of flavonoids which in turn inhibit auxin transport and reduce plant growth.; hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (HCT); CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G57840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o23917|hcbt2_diaca : 320.0) Anthranilate N-benzoyltransferase protein 2 (EC 2.3.1.144) (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 2) - Dianthus caryophyllus (Carnation) (Clove pink) & (reliability: 1006.0) & (original description: no original description)","protein_coding" "PSME_00041451-RA","No alias","Pseudotsuga menziesii","(at5g20850 : 313.0) Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation.; RAS associated with diabetes protein 51 (RAD51); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, double-strand break repair, response to gamma radiation, response to radiation, DNA metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), DNA repair Rad51/transcription factor NusA, alpha-helical (InterPro:IPR010995), DNA recombination and repair protein, RecA-like (InterPro:IPR016467), DNA recombination/repair protein Rad51 (InterPro:IPR011941), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), ATPase, AAA+ type, core (InterPro:IPR003593), DNA recombination and repair protein Rad51, C-terminal (InterPro:IPR013632), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587); BEST Arabidopsis thaliana protein match is: DNA repair (Rad51) family protein (TAIR:AT3G22880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q9xed7|r51a2_maize : 310.0) DNA repair protein RAD51 homolog B (Rad51-like protein B) (RAD51B) (ZmRAD51b) - Zea mays (Maize) & (reliability: 626.0) & (original description: no original description)","protein_coding" "PSME_00041473-RA","No alias","Pseudotsuga menziesii","(at2g44710 : 146.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G00830.2); Has 31429 Blast hits to 23398 proteins in 2969 species: Archae - 812; Bacteria - 21040; Metazoa - 874; Fungi - 1027; Plants - 329; Viruses - 0; Other Eukaryotes - 7347 (source: NCBI BLink). & (reliability: 292.0) & (original description: no original description)","protein_coding" "PSME_00041696-RA","No alias","Pseudotsuga menziesii",""(at2g46950 : 291.0) member of CYP709B; ""cytochrome P450, family 709, subfamily B, polypeptide 2"" (CYP709B2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 709, subfamily B, polypeptide 3 (TAIR:AT4G27710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q05047|c72a1_catro : 219.0) Cytochrome P450 72A1 (EC 1.3.3.9) (CYPLXXII) (Secologanin synthase) (SLS) - Catharanthus roseus (Rosy periwinkle) (Madagascar periwinkle) & (reliability: 582.0) & (original description: no original description)"","protein_coding" "PSME_00041829-RA","No alias","Pseudotsuga menziesii","(at3g48090 : 114.0) Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases.; enhanced disease susceptibility 1 (EDS1); CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G48080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 214.0) & (original description: no original description)","protein_coding" "PSME_00041861-RA","No alias","Pseudotsuga menziesii","(at3g07130 : 289.0) Encodes PAP15, a purple acid phosphatase with phytase activity. Expression of PAP15 is developmentally and temporally regulated, with strong expression at the early stages of seedling growth and pollen germination. The expression is also organ/tissue-specific, with strongest expression in the vasculature, pollen grains, and roots. Recombinant PAP protein exhibits broad substrate specificity with moderate phytase activity. PAP15 likely mobilizes phosphorus reserves in plants, particularly during seed and pollen germination.; purple acid phosphatase 15 (PAP15); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: pollen germination, seed germination; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: seedling growth, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 13 (TAIR:AT2G32770.3); Has 2322 Blast hits to 2305 proteins in 472 species: Archae - 7; Bacteria - 914; Metazoa - 228; Fungi - 75; Plants - 768; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink). & (q09131|ppaf_soybn : 160.0) Purple acid phosphatase precursor (EC 3.1.3.2) (Manganese(II) purple acid phosphatase) - Glycine max (Soybean) & (reliability: 578.0) & (original description: no original description)","protein_coding" "PSME_00041883-RA","No alias","Pseudotsuga menziesii","(at3g61250 : 276.0) Member of the R2R3 factor gene family.; myb domain protein 17 (MYB17); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 16 (TAIR:AT5G15310.1); Has 8810 Blast hits to 8210 proteins in 476 species: Archae - 0; Bacteria - 0; Metazoa - 695; Fungi - 480; Plants - 5869; Viruses - 3; Other Eukaryotes - 1763 (source: NCBI BLink). & (p80073|myb2_phypa : 209.0) Myb-related protein Pp2 - Physcomitrella patens (Moss) & (reliability: 552.0) & (original description: no original description)","protein_coding" "PSME_00041911-RA","No alias","Pseudotsuga menziesii","(at5g62670 : 133.0) H(+)-ATPase 11 (HA11); FUNCTIONS IN: ATPase activity; INVOLVED IN: cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type, plasma-membrane proton-efflux (InterPro:IPR006534), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: H(+)-ATPase 4 (TAIR:AT3G47950.1); Has 36311 Blast hits to 32678 proteins in 3159 species: Archae - 691; Bacteria - 22958; Metazoa - 3912; Fungi - 2478; Plants - 1926; Viruses - 3; Other Eukaryotes - 4343 (source: NCBI BLink). & (q08436|pma3_nicpl : 131.0) Plasma membrane ATPase 3 (EC 3.6.3.6) (Proton pump 3) - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (reliability: 266.0) & (original description: no original description)","protein_coding" "PSME_00041945-RA","No alias","Pseudotsuga menziesii","(q8w013|comt1_catro : 154.0) Caffeic acid 3-O-methyltransferase (EC 2.1.1.68) (S-adenosysl-L-methionine:caffeic acid 3-O-methyltransferase) (COMT) (CAOMT) - Catharanthus roseus (Rosy periwinkle) (Madagascar periwinkle) & (at5g54160 : 152.0) A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3í-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3í-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase; O-methyltransferase 1 (OMT1); FUNCTIONS IN: myricetin 3'-O-methyltransferase activity, quercetin 3-O-methyltransferase activity, caffeate O-methyltransferase activity; INVOLVED IN: lignin biosynthetic process, flavonol biosynthetic process; LOCATED IN: cytosol, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G77520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 304.0) & (original description: no original description)","protein_coding" "PSME_00042010-RA","No alias","Pseudotsuga menziesii","(at5g19430 : 114.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G12310.1). & (reliability: 228.0) & (original description: no original description)","protein_coding" "PSME_00042015-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 209.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 203.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 418.0) & (original description: no original description)","protein_coding" "PSME_00042116-RA","No alias","Pseudotsuga menziesii","(at3g63340 : 214.0) Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein serine/threonine phosphatase activity, protein kinase activity, catalytic activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein phosphatase 2C-related (InterPro:IPR001932), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), Protein phosphatase 2C (InterPro:IPR015655); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G63320.1). & (reliability: 428.0) & (original description: no original description)","protein_coding" "PSME_00042157-RA","No alias","Pseudotsuga menziesii","(p12460|tbb2_soybn : 96.7) Tubulin beta-2 chain (Beta-2 tubulin) - Glycine max (Soybean) & (at5g44340 : 92.4) beta tubulin gene; tubulin beta chain 4 (TUB4); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, protein polymerization, microtubule-based movement; LOCATED IN: tubulin complex, cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta-9 chain (TAIR:AT4G20890.1); Has 23619 Blast hits to 23523 proteins in 4869 species: Archae - 36; Bacteria - 51; Metazoa - 4471; Fungi - 14157; Plants - 1545; Viruses - 0; Other Eukaryotes - 3359 (source: NCBI BLink). & (reliability: 184.8) & (original description: no original description)","protein_coding" "PSME_00042269-RA","No alias","Pseudotsuga menziesii","(at5g07050 : 388.0) nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT2G40900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 776.0) & (original description: no original description)","protein_coding" "PSME_00042343-RA","No alias","Pseudotsuga menziesii","(at4g35785 : 133.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: ribonucleoprotein complex, chloroplast; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G07350.1). & (reliability: 266.0) & (original description: no original description)","protein_coding" "PSME_00042420-RA","No alias","Pseudotsuga menziesii","(q8lkz1|nork_pea : 92.0) Nodulation receptor kinase precursor (EC 2.7.11.1) - Pisum sativum (Garden pea) & (at2g28970 : 91.3) Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G28990.1); Has 169810 Blast hits to 124514 proteins in 4517 species: Archae - 105; Bacteria - 13883; Metazoa - 45515; Fungi - 10149; Plants - 80466; Viruses - 403; Other Eukaryotes - 19289 (source: NCBI BLink). & (reliability: 166.4) & (original description: no original description)","protein_coding" "PSME_00042504-RA","No alias","Pseudotsuga menziesii","(at4g38640 : 159.0) Plasma-membrane choline transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 318.0) & (original description: no original description)","protein_coding" "PSME_00042520-RA","No alias","Pseudotsuga menziesii","(at5g65690 : 315.0) Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent).; phosphoenolpyruvate carboxykinase 2 (PCK2); FUNCTIONS IN: phosphoenolpyruvate carboxykinase activity, purine nucleotide binding, phosphoenolpyruvate carboxykinase (ATP) activity, ATP binding; INVOLVED IN: gluconeogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, male gametophyte, root, flower, trichome; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Phosphoenolpyruvate carboxykinase, N-terminal (InterPro:IPR008210), Phosphoenolpyruvate carboxykinase (ATP), conserved site (InterPro:IPR015994), Phosphoenolpyruvate carboxykinase, ATP-utilising (InterPro:IPR001272), Phosphoenolpyruvate carboxykinase, C-terminal (InterPro:IPR013035); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxykinase 1 (TAIR:AT4G37870.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p42066|pepck_cucsa : 311.0) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) - Cucumis sativus (Cucumber) & (reliability: 630.0) & (original description: no original description)","protein_coding" "PSME_00042534-RA","No alias","Pseudotsuga menziesii","(at1g22540 : 298.0) Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G72140.1); Has 7676 Blast hits to 7510 proteins in 1439 species: Archae - 0; Bacteria - 3907; Metazoa - 586; Fungi - 484; Plants - 2183; Viruses - 0; Other Eukaryotes - 516 (source: NCBI BLink). & (reliability: 596.0) & (original description: no original description)","protein_coding" "PSME_00042562-RA","No alias","Pseudotsuga menziesii","(at4g10490 : 82.8) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: secondary metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G10500.1); Has 8582 Blast hits to 8537 proteins in 997 species: Archae - 0; Bacteria - 1099; Metazoa - 117; Fungi - 945; Plants - 4980; Viruses - 0; Other Eukaryotes - 1441 (source: NCBI BLink). & (reliability: 165.6) & (original description: no original description)","protein_coding" "PSME_00042581-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00042827-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00042872-RA","No alias","Pseudotsuga menziesii","(at1g76140 : 249.0) Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G20380.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 498.0) & (original description: no original description)","protein_coding" "PSME_00042962-RA","No alias","Pseudotsuga menziesii","(q67eu8|r51a1_maize : 117.0) DNA repair protein RAD51 homolog A (Rad51-like protein A) (RAD51A) (ZmRAD51a) - Zea mays (Maize) & (at5g20850 : 116.0) Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation.; RAS associated with diabetes protein 51 (RAD51); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, double-strand break repair, response to gamma radiation, response to radiation, DNA metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), DNA repair Rad51/transcription factor NusA, alpha-helical (InterPro:IPR010995), DNA recombination and repair protein, RecA-like (InterPro:IPR016467), DNA recombination/repair protein Rad51 (InterPro:IPR011941), Helix-hairpin-helix DNA-binding motif, class 1 (InterPro:IPR003583), ATPase, AAA+ type, core (InterPro:IPR003593), DNA recombination and repair protein Rad51, C-terminal (InterPro:IPR013632), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587); BEST Arabidopsis thaliana protein match is: DNA repair (Rad51) family protein (TAIR:AT3G22880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 232.0) & (original description: no original description)","protein_coding" "PSME_00043013-RA","No alias","Pseudotsuga menziesii","(at5g57250 : 388.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G59900.1); Has 71706 Blast hits to 14592 proteins in 301 species: Archae - 6; Bacteria - 54; Metazoa - 648; Fungi - 890; Plants - 68117; Viruses - 0; Other Eukaryotes - 1991 (source: NCBI BLink). & (q76c99|rf1_orysa : 283.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 776.0) & (original description: no original description)","protein_coding" "PSME_00043033-RA","No alias","Pseudotsuga menziesii","(q40082|xyla_horvu : 172.0) Xylose isomerase (EC 5.3.1.5) - Hordeum vulgare (Barley) & (at5g57655 : 170.0) xylose isomerase family protein; FUNCTIONS IN: xylose isomerase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Xylose isomerase-like, TIM barrel domain (InterPro:IPR013022), Xylose isomerase, bacterial type (InterPro:IPR013452), Xylose isomerase (InterPro:IPR001998), Xylose isomerase, TIM barrel domain (InterPro:IPR012307); Has 2515 Blast hits to 2515 proteins in 856 species: Archae - 2; Bacteria - 1880; Metazoa - 11; Fungi - 2; Plants - 82; Viruses - 0; Other Eukaryotes - 538 (source: NCBI BLink). & (reliability: 340.0) & (original description: no original description)","protein_coding" "PSME_00043090-RA","No alias","Pseudotsuga menziesii","(at2g38620 : 173.0) Encodes a member of a plant specific family of cyclin dependent kinases.; cyclin-dependent kinase B1;2 (CDKB1;2); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase B1;1 (TAIR:AT3G54180.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q38774|cdc2c_antma : 166.0) Cell division control protein 2 homolog C (EC 2.7.11.22) (EC 2.7.11.23) - Antirrhinum majus (Garden snapdragon) & (reliability: 346.0) & (original description: no original description)","protein_coding" "PSME_00043101-RA","No alias","Pseudotsuga menziesii","(at2g24130 : 268.0) Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G47570.1); Has 211952 Blast hits to 136025 proteins in 5092 species: Archae - 179; Bacteria - 23123; Metazoa - 70875; Fungi - 10647; Plants - 82602; Viruses - 325; Other Eukaryotes - 24201 (source: NCBI BLink). & (q8lpb4|pskr_dauca : 185.0) Phytosulfokine receptor precursor (EC 2.7.11.1) (Phytosulfokine LRR receptor kinase) - Daucus carota (Carrot) & (reliability: 536.0) & (original description: no original description)","protein_coding" "PSME_00043102-RA","No alias","Pseudotsuga menziesii","(at1g76540 : 206.0) Encodes a cyclin-dependent protein kinase involved in regulation of the G2/M transition of the mitotic cell cycle. Specifically binds to the cyclin CYCD4;1, expressed in shoot meristem, young leaves and vascular tissue during the G2/M phase. Required for proper organization of the shoot apical meristem and for hormone signaling.; cyclin-dependent kinase B2;1 (CDKB2;1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase B2;2 (TAIR:AT1G20930.1); Has 111951 Blast hits to 110345 proteins in 2908 species: Archae - 97; Bacteria - 11880; Metazoa - 41997; Fungi - 12251; Plants - 25980; Viruses - 445; Other Eukaryotes - 19301 (source: NCBI BLink). & (q38775|cdc2d_antma : 206.0) Cell division control protein 2 homolog D (EC 2.7.11.22) (EC 2.7.11.23) - Antirrhinum majus (Garden snapdragon) & (reliability: 412.0) & (original description: no original description)","protein_coding" "PSME_00043154-RA","No alias","Pseudotsuga menziesii"," (original description: no original description)","protein_coding" "PSME_00043377-RA","No alias","Pseudotsuga menziesii","(at4g21410 : 356.0) Encodes a cysteine-rich receptor-like protein kinase.; cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (CRK29); FUNCTIONS IN: kinase activity; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (TAIR:AT4G21400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q8lkz1|nork_pea : 163.0) Nodulation receptor kinase precursor (EC 2.7.11.1) - Pisum sativum (Garden pea) & (reliability: 712.0) & (original description: no original description)","protein_coding" "PSME_00043447-RA","No alias","Pseudotsuga menziesii","(at2g02990 : 201.0) member of the ribonuclease T2 family, responds to inorganic phosphate starvation, and inhibits production of anthocyanin. Also involved in wound-induced signaling independent of jasmonic acid.; ribonuclease 1 (RNS1); FUNCTIONS IN: ribonuclease activity, endoribonuclease activity; INVOLVED IN: cellular response to phosphate starvation, aging, response to wounding, anthocyanin biosynthetic process; LOCATED IN: extracellular region, cell wall, plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ribonuclease T2 (InterPro:IPR001568), Ribonuclease T2, active site (InterPro:IPR018188); BEST Arabidopsis thaliana protein match is: Ribonuclease T2 family protein (TAIR:AT1G14220.1); Has 2632 Blast hits to 2631 proteins in 514 species: Archae - 0; Bacteria - 441; Metazoa - 304; Fungi - 244; Plants - 1533; Viruses - 7; Other Eukaryotes - 103 (source: NCBI BLink). & (reliability: 402.0) & (original description: no original description)","protein_coding" "PSME_00043458-RA","No alias","Pseudotsuga menziesii","(at2g43330 : 108.0) Encodes a tonoplast-localized myo-inositol exporter, involved in efflux of myo-inositol from the vacuole to the cytosol. The gene is ubiquitously expressed. Reduced root growth in knock-out mutants grown on low inositol agar medium.; inositol transporter 1 (INT1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, myo-inositol:hydrogen symporter activity, sugar:hydrogen symporter activity; INVOLVED IN: myo-inositol transport; LOCATED IN: plant-type vacuole membrane, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: inositol transporter 2 (TAIR:AT1G30220.1); Has 41776 Blast hits to 41190 proteins in 2518 species: Archae - 669; Bacteria - 22523; Metazoa - 5695; Fungi - 8297; Plants - 2788; Viruses - 0; Other Eukaryotes - 1804 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description)","protein_coding" "PSME_00043495-RA","No alias","Pseudotsuga menziesii","(at3g11980 : 197.0) Similar to fatty acid reductases.; MALE STERILITY 2 (MS2); FUNCTIONS IN: fatty-acyl-CoA reductase (alcohol-forming) activity, oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor; INVOLVED IN: microsporogenesis, pollen exine formation; LOCATED IN: chloroplast; EXPRESSED IN: leaf whorl, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Male sterility (InterPro:IPR004262), NAD(P)-binding domain (InterPro:IPR016040), Male sterility, NAD-binding (InterPro:IPR013120); BEST Arabidopsis thaliana protein match is: fatty acid reductase 6 (TAIR:AT3G56700.1); Has 2390 Blast hits to 2358 proteins in 427 species: Archae - 4; Bacteria - 606; Metazoa - 985; Fungi - 290; Plants - 282; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink). & (reliability: 394.0) & (original description: no original description)","protein_coding" "PSME_00043513-RA","No alias","Pseudotsuga menziesii","(at1g34750 : 215.0) Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: phytochrome-associated protein phosphatase type 2C (TAIR:AT1G22280.1); Has 7616 Blast hits to 7609 proteins in 922 species: Archae - 14; Bacteria - 1457; Metazoa - 1483; Fungi - 777; Plants - 2623; Viruses - 11; Other Eukaryotes - 1251 (source: NCBI BLink). & (reliability: 430.0) & (original description: no original description)","protein_coding" "PSME_00043529-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00043711-RA","No alias","Pseudotsuga menziesii","(at2g16920 : 132.0) ubiquitin-conjugating enzyme 23 (UBC23); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: phosphate 2 (TAIR:AT2G33770.1); Has 13499 Blast hits to 9775 proteins in 506 species: Archae - 15; Bacteria - 1590; Metazoa - 4947; Fungi - 2194; Plants - 1786; Viruses - 166; Other Eukaryotes - 2801 (source: NCBI BLink). & (reliability: 264.0) & (original description: no original description)","protein_coding" "PSME_00043901-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00043984-RA","No alias","Pseudotsuga menziesii","(at2g30770 : 238.0) putative cytochrome P450; cytochrome P450, family 71, subfamily A, polypeptide 13 (CYP71A13); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily A, polypeptide 12 (TAIR:AT2G30750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (o48923|c71da_soybn : 236.0) Cytochrome P450 71D10 (EC 1.14.-.-) - Glycine max (Soybean) & (reliability: 464.0) & (original description: no original description)","protein_coding" "PSME_00044440-RA","No alias","Pseudotsuga menziesii","(p0c1u4|gun9_orysa : 939.0) Endoglucanase 9 (EC 3.2.1.4) (Endo-1,4-beta glucanase 9) (OsGLU1) - Oryza sativa (Rice) & (at5g49720 : 919.0) Encodes a membrane-bound endo-1,4-beta-D-glucanase, involved in cellulose biosynthesis. Loss-of-function mutants have severe cellulose-deficient phenotypes. During cell elongation, KOR1 is associated with Golgi apparatus and early endosome. Inhibition of cellulose biosynthesis promoted a redistribution of KOR1 in subcellular locations. These observations suggest that deposition of cellulose involves the intracellular cycling of KOR1.; glycosyl hydrolase 9A1 (GH9A1); FUNCTIONS IN: cellulase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: in 6 processes; LOCATED IN: Golgi apparatus, plasma membrane, cell plate, early endosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Six-hairpin glycosidase (InterPro:IPR012341), Glycoside hydrolase, family 9, active site (InterPro:IPR018221), Six-hairpin glycosidase-like (InterPro:IPR008928), Glycoside hydrolase, family 9 (InterPro:IPR001701); BEST Arabidopsis thaliana protein match is: glycosyl hydrolase 9A3 (TAIR:AT4G24260.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1838.0) & (original description: no original description)","protein_coding" "PSME_00044489-RA","No alias","Pseudotsuga menziesii","(at3g11320 : 396.0) Nucleotide-sugar transporter family protein; FUNCTIONS IN: organic anion transmembrane transporter activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide-sugar transporter family protein (TAIR:AT5G05820.1); Has 3089 Blast hits to 3084 proteins in 315 species: Archae - 10; Bacteria - 135; Metazoa - 742; Fungi - 470; Plants - 1357; Viruses - 0; Other Eukaryotes - 375 (source: NCBI BLink). & (reliability: 792.0) & (original description: no original description)","protein_coding" "PSME_00044583-RA","No alias","Pseudotsuga menziesii","(at4g19130 : 240.0) Replication factor-A protein 1-related; FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor A, C-terminal (InterPro:IPR013955), Zinc finger, CCHC-type (InterPro:IPR001878), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related (TAIR:AT5G45400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 480.0) & (original description: no original description)","protein_coding" "PSME_00044600-RA","No alias","Pseudotsuga menziesii","(at5g17540 : 325.0) HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (TAIR:AT3G03480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o24645|hcbt1_diaca : 179.0) Anthranilate N-benzoyltransferase protein 1 (EC 2.3.1.144) (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 1) - Dianthus caryophyllus (Carnation) (Clove pink) & (reliability: 650.0) & (original description: no original description)","protein_coding" "PSME_00044704-RA","No alias","Pseudotsuga menziesii","(at5g25930 : 349.0) Protein kinase family protein with leucine-rich repeat domain; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: receptor like protein 52 (TAIR:AT5G25910.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p93194|rpk1_iponi : 208.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 698.0) & (original description: no original description)","protein_coding" "PSME_00044781-RA","No alias","Pseudotsuga menziesii","(at1g44970 : 405.0) Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G18150.1); Has 4592 Blast hits to 4563 proteins in 305 species: Archae - 0; Bacteria - 10; Metazoa - 5; Fungi - 193; Plants - 4307; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). & (p22195|per1_arahy : 313.0) Cationic peroxidase 1 precursor (EC 1.11.1.7) (PNPC1) - Arachis hypogaea (Peanut) & (reliability: 810.0) & (original description: no original description)","protein_coding" "PSME_00045033-RA","No alias","Pseudotsuga menziesii","(at5g19780 : 802.0) Encodes an isoform of alpha tubulin. Closely related to adjacent gene TUA3 suggesting recent duplication.; tubulin alpha-5 (TUA5); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: response to cadmium ion, microtubule-based process; LOCATED IN: tubulin complex, cytosol, cell wall, membrane; EXPRESSED IN: 6 plant structures; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-3 (TAIR:AT5G19770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p33627|tba6_maize : 799.0) Tubulin alpha-6 chain (Alpha-6 tubulin) - Zea mays (Maize) & (reliability: 1604.0) & (original description: no original description)","protein_coding" "PSME_00045045-RA","No alias","Pseudotsuga menziesii","(at1g72250 : 155.0) Di-glucose binding protein with Kinesin motor domain; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Malectin/receptor-like protein kinase (InterPro:IPR021720), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: Di-glucose binding protein with Kinesin motor domain (TAIR:AT2G22610.2). & (reliability: 310.0) & (original description: no original description)","protein_coding" "PSME_00045137-RA","No alias","Pseudotsuga menziesii","(at3g49670 : 738.0) Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM1,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.; BARELY ANY MERISTEM 2 (BAM2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT5G65700.2); Has 214102 Blast hits to 137812 proteins in 4967 species: Archae - 148; Bacteria - 22093; Metazoa - 65883; Fungi - 10747; Plants - 88678; Viruses - 437; Other Eukaryotes - 26116 (source: NCBI BLink). & (p93194|rpk1_iponi : 391.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 1448.0) & (original description: no original description)","protein_coding" "PSME_00045211-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00045238-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00045310-RA","No alias","Pseudotsuga menziesii","(at4g34135 : 183.0) The At4g34135 gene encodes a flavonol 7-O-glucosyltransferase (EC 2.4.1.237) that glucosylates also with a 20 fold lower activity flavonols (kaempferol and quercetin) at the 3-O-position.; UDP-glucosyltransferase 73B2 (UGT73B2); FUNCTIONS IN: flavonol 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glucosyltransferase activity; INVOLVED IN: flavonol biosynthetic process, response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 73B3 (TAIR:AT4G34131.1); Has 4778 Blast hits to 4740 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 4776; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (p56725|zox_phavu : 138.0) Zeatin O-xylosyltransferase (EC 2.4.2.40) (Zeatin O-beta-D-xylosyltransferase) - Phaseolus vulgaris (Kidney bean) (French bean) & (reliability: 342.0) & (original description: no original description)","protein_coding" "PSME_00045342-RA","No alias","Pseudotsuga menziesii","(at1g22280 : 144.0) Encodes a phytochrome-associated protein, PAPP2C (phytochrome-associated protein phosphatase type 2C). PAPP2C interacts in the nucleus with phyA (phytochrome A) and phyB. Functions as a regulator of phytochrome-interacting factor PIF3 by dephosphorylating phytochromes in the nucleus.; phytochrome-associated protein phosphatase type 2C (PAPP2C); CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G34750.1). & (reliability: 288.0) & (original description: no original description)","protein_coding" "PSME_00045414-RA","No alias","Pseudotsuga menziesii","(at5g46050 : 325.0) Encodes a di- and tri-peptide transporter involved in responses to wounding, virulent bacterial pathogens, and high NaCl concentrations. The protein is predicted to have 12 transmembrane helicies.; peptide transporter 3 (PTR3); FUNCTIONS IN: dipeptide transporter activity, tripeptide transporter activity, transporter activity; INVOLVED IN: in 12 processes; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G46040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 650.0) & (original description: no original description)","protein_coding" "PSME_00045433-RA","No alias","Pseudotsuga menziesii","(at3g04920 : 82.4) Ribosomal protein S24e family protein; FUNCTIONS IN: structural constituent of ribosome, nucleotide binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S24e (InterPro:IPR001976), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal S24e conserved site (InterPro:IPR018098); BEST Arabidopsis thaliana protein match is: Ribosomal protein S24e family protein (TAIR:AT5G28060.1); Has 888 Blast hits to 888 proteins in 327 species: Archae - 80; Bacteria - 0; Metazoa - 406; Fungi - 151; Plants - 124; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). & (reliability: 164.8) & (original description: no original description)","protein_coding" "PSME_00045468-RA","No alias","Pseudotsuga menziesii","(at5g41190 : 464.0) CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 928.0) & (original description: no original description)","protein_coding" "PSME_00045650-RA","No alias","Pseudotsuga menziesii","(q949g3|pdr1_nicpl : 88.6) Pleiotropic drug resistance protein 1 (NpPDR1) - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (at2g36380 : 87.4) pleiotropic drug resistance 6 (PDR6); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 11 (TAIR:AT1G66950.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 174.8) & (original description: no original description)","protein_coding" "PSME_00045803-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00045831-RA","No alias","Pseudotsuga menziesii","(at5g17820 : 291.0) Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: root, leaf; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G03670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p22196|per2_arahy : 260.0) Cationic peroxidase 2 precursor (EC 1.11.1.7) (PNPC2) - Arachis hypogaea (Peanut) & (reliability: 582.0) & (original description: no original description)","protein_coding" "PSME_00045862-RA","No alias","Pseudotsuga menziesii","(at3g58690 : 206.0) Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G54820.1); Has 119556 Blast hits to 118228 proteins in 3954 species: Archae - 119; Bacteria - 14059; Metazoa - 43160; Fungi - 10190; Plants - 33928; Viruses - 396; Other Eukaryotes - 17704 (source: NCBI BLink). & (o24585|cri4_maize : 112.0) Putative receptor protein kinase CRINKLY4 precursor (EC 2.7.11.1) - Zea mays (Maize) & (reliability: 412.0) & (original description: no original description)","protein_coding" "PSME_00045876-RA","No alias","Pseudotsuga menziesii","(at1g62020 : 294.0) Coatomer, alpha subunit; FUNCTIONS IN: structural molecule activity, transporter activity; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPI vesicle coat, plasma membrane, CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Coatomer, WD associated region (InterPro:IPR006692), WD40 repeat, conserved site (InterPro:IPR019775), Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Coatomer, alpha subunit (InterPro:IPR016391), WD40 repeat, subgroup (InterPro:IPR019781), Coatomer, alpha subunit, C-terminal (InterPro:IPR010714); BEST Arabidopsis thaliana protein match is: Coatomer, alpha subunit (TAIR:AT2G21390.1); Has 77998 Blast hits to 29937 proteins in 781 species: Archae - 58; Bacteria - 8535; Metazoa - 32327; Fungi - 16718; Plants - 10020; Viruses - 0; Other Eukaryotes - 10340 (source: NCBI BLink). & (reliability: 588.0) & (original description: no original description)","protein_coding" "PSME_00045900-RA","No alias","Pseudotsuga menziesii","(at1g12220 : 213.0) Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB.; RESISTANT TO P. SYRINGAE 5 (RPS5); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT1G12280.1). & (reliability: 426.0) & (original description: no original description)","protein_coding" "PSME_00046011-RA","No alias","Pseudotsuga menziesii","(at1g75660 : 145.0) Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products.; 5'-3' exoribonuclease 3 (XRN3); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: exoribonuclease 2 (TAIR:AT5G42540.1); Has 4264 Blast hits to 3505 proteins in 442 species: Archae - 2; Bacteria - 295; Metazoa - 1361; Fungi - 725; Plants - 751; Viruses - 31; Other Eukaryotes - 1099 (source: NCBI BLink). & (reliability: 290.0) & (original description: no original description)","protein_coding" "PSME_00046222-RA","No alias","Pseudotsuga menziesii","(at2g47330 : 952.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G20920.1); Has 46798 Blast hits to 46047 proteins in 3085 species: Archae - 817; Bacteria - 24489; Metazoa - 6167; Fungi - 4661; Plants - 2616; Viruses - 11; Other Eukaryotes - 8037 (source: NCBI BLink). & (p46942|db10_nicsy : 328.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 1904.0) & (original description: no original description)","protein_coding" "PSME_00046223-RA","No alias","Pseudotsuga menziesii","(at4g05170 : 87.4) basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G21340.1); Has 1452 Blast hits to 1452 proteins in 51 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 4; Plants - 1443; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). & (reliability: 174.8) & (original description: no original description)","protein_coding" "PSME_00046246-RA","No alias","Pseudotsuga menziesii","(at4g33300 : 215.0) ADR1-like 1 (ADR1-L1); FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Powdery mildew resistance protein, RPW8 domain (InterPro:IPR008808), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: ADR1-like 2 (TAIR:AT5G04720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 430.0) & (original description: no original description)","protein_coding" "PSME_00046416-RA","No alias","Pseudotsuga menziesii","(at3g02100 : 250.0) UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G05675.1); Has 7982 Blast hits to 7880 proteins in 431 species: Archae - 0; Bacteria - 322; Metazoa - 2378; Fungi - 47; Plants - 5098; Viruses - 73; Other Eukaryotes - 64 (source: NCBI BLink). & (p56725|zox_phavu : 154.0) Zeatin O-xylosyltransferase (EC 2.4.2.40) (Zeatin O-beta-D-xylosyltransferase) - Phaseolus vulgaris (Kidney bean) (French bean) & (reliability: 454.0) & (original description: no original description)","protein_coding" "PSME_00046600-RA","No alias","Pseudotsuga menziesii","(at4g35785 : 131.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: ribonucleoprotein complex, chloroplast; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G07350.1). & (reliability: 262.0) & (original description: no original description)","protein_coding" "PSME_00046642-RA","No alias","Pseudotsuga menziesii"," (original description: no original description)","protein_coding" "PSME_00046668-RA","No alias","Pseudotsuga menziesii","(at5g48930 : 496.0) At5g48930 has been shown to encode for the hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase (HCT) both synthesizing and catabolizing the hydroxycinnamoylesters (coumaroyl/caffeoyl shikimate and quinate) involved in the phenylpropanoid pathway. Influence on the accumulation of flavonoids which in turn inhibit auxin transport and reduce plant growth.; hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (HCT); CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G57840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o23917|hcbt2_diaca : 319.0) Anthranilate N-benzoyltransferase protein 2 (EC 2.3.1.144) (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 2) - Dianthus caryophyllus (Carnation) (Clove pink) & (reliability: 992.0) & (original description: no original description)","protein_coding" "PSME_00046687-RA","No alias","Pseudotsuga menziesii","(at5g35570 : 327.0) O-fucosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT2G37980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 654.0) & (original description: no original description)","protein_coding" "PSME_00046703-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00046959-RA","No alias","Pseudotsuga menziesii","(at5g60710 : 283.0) Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G38970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 566.0) & (original description: no original description)","protein_coding" "PSME_00047030-RA","No alias","Pseudotsuga menziesii","(at5g55300 : 207.0) Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. Functions in stem cell maintenance at all stages of shoot and floral meristems and in the regulation of gene silencing.; DNA topoisomerase I alpha (TOP1ALPHA); FUNCTIONS IN: protein binding, DNA topoisomerase type I activity; INVOLVED IN: in 8 processes; LOCATED IN: chromosome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499); BEST Arabidopsis thaliana protein match is: DNA topoisomerase 1 beta (TAIR:AT5G55310.1). & (p93119|top1_dauca : 162.0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) - Daucus carota (Carrot) & (reliability: 414.0) & (original description: no original description)","protein_coding" "PSME_00047073-RA","No alias","Pseudotsuga menziesii","(at4g10020 : 140.0) Encodes a putative hydroxysteroid dehydrogenase (HSD). Genes that encode HSD include: At5g50600 and At5g50700 (HSD1), At3g47350(HSD2), At3g47360(HSD3), At5g50590 and At5g50690(HSD4), At5g50770(HSD6) (Plant Cell Physiology 50:1463). Two copies of HSD1 and HSD4 exist due to a gene duplication event. In Plant Physiology 145:87, At5g50690 is HSD7, At4g10020 is HSD5.; hydroxysteroid dehydrogenase 5 (HSD5); FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: hydroxysteroid dehydrogenase 1 (TAIR:AT5G50600.1); Has 75328 Blast hits to 75030 proteins in 3270 species: Archae - 807; Bacteria - 52029; Metazoa - 4592; Fungi - 3635; Plants - 1773; Viruses - 2; Other Eukaryotes - 12490 (source: NCBI BLink). & (reliability: 280.0) & (original description: no original description)","protein_coding" "PSME_00047316-RA","No alias","Pseudotsuga menziesii","(at1g60560 : 239.0) SWIM zinc finger family protein; BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT4G13970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 478.0) & (original description: no original description)","protein_coding" "PSME_00047395-RA","No alias","Pseudotsuga menziesii","(at1g22540 : 337.0) Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G72140.1); Has 7676 Blast hits to 7510 proteins in 1439 species: Archae - 0; Bacteria - 3907; Metazoa - 586; Fungi - 484; Plants - 2183; Viruses - 0; Other Eukaryotes - 516 (source: NCBI BLink). & (reliability: 612.0) & (original description: no original description)","protein_coding" "PSME_00047569-RA","No alias","Pseudotsuga menziesii","(p07979|gub_nicpl : 243.0) Lichenase precursor (EC 3.2.1.73) (Endo-beta-1,3-1,4 glucanase) - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (at2g01630 : 239.0) O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT1G66250.1); Has 2147 Blast hits to 2131 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 5; Plants - 2133; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). & (reliability: 446.0) & (original description: no original description)","protein_coding" "PSME_00047714-RA","No alias","Pseudotsuga menziesii","(q06509|comt1_maize : 221.0) Caffeic acid 3-O-methyltransferase (EC 2.1.1.68) (S-adenosysl-L-methionine:caffeic acid 3-O-methyltransferase) (COMT) (CAOMT) - Zea mays (Maize) & (at5g54160 : 217.0) A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3í-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3í-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase; O-methyltransferase 1 (OMT1); FUNCTIONS IN: myricetin 3'-O-methyltransferase activity, quercetin 3-O-methyltransferase activity, caffeate O-methyltransferase activity; INVOLVED IN: lignin biosynthetic process, flavonol biosynthetic process; LOCATED IN: cytosol, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G77520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 434.0) & (original description: no original description)","protein_coding" "PSME_00047726-RA","No alias","Pseudotsuga menziesii","(at5g66430 : 125.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G04370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q9fyz9|bamt_antma : 93.6) Benzoate carboxyl methyltransferase (EC 2.1.1.-) (S-adenosyl-L-methionine:benzoic acid carboxyl methyltransferase) - Antirrhinum majus (Garden snapdragon) & (reliability: 250.0) & (original description: no original description)","protein_coding" "PSME_00047916-RA","No alias","Pseudotsuga menziesii","(p17299|act3_orysa : 287.0) Actin-3 - Oryza sativa (Rice) & (at5g09810 : 285.0) Member of Actin gene family.Mutants are defective in germination and root growth.; actin 7 (ACT7); FUNCTIONS IN: protein binding, structural constituent of cytoskeleton; INVOLVED IN: in 9 processes; LOCATED IN: mitochondrion, nucleolus, cell wall, cytoskeleton, plasma membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1); Has 15241 Blast hits to 14839 proteins in 3047 species: Archae - 8; Bacteria - 21; Metazoa - 5732; Fungi - 5247; Plants - 1603; Viruses - 2; Other Eukaryotes - 2628 (source: NCBI BLink). & (reliability: 526.0) & (original description: no original description)","protein_coding" "PSME_00047920-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00047986-RA","No alias","Pseudotsuga menziesii","(at5g67270 : 106.0) encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.; end binding protein 1C (EB1C); CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), EB1, C-terminal (InterPro:IPR004953); BEST Arabidopsis thaliana protein match is: microtubule end binding protein EB1A (TAIR:AT3G47690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 212.0) & (original description: no original description)","protein_coding" "PSME_00048064-RA","No alias","Pseudotsuga menziesii","(at1g69530 : 317.0) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.; expansin A1 (EXPA1); CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin A15 (TAIR:AT2G03090.1). & (q40636|expa2_orysa : 302.0) Expansin-A2 precursor (OsEXPA2) (Alpha-expansin-2) (OsEXP2) (OsaEXPa1.23) (RiExB) (RiExC) - Oryza sativa (Rice) & (reliability: 634.0) & (original description: no original description)","protein_coding" "PSME_00048152-RA","No alias","Pseudotsuga menziesii","(at2g36660 : 169.0) polyadenylate-binding protein, putative / PABP, putative. Member of the class III family of PABP proteins.; poly(A) binding protein 7 (PAB7); CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 2 (TAIR:AT4G34110.1); Has 517049 Blast hits to 488607 proteins in 21541 species: Archae - 10464; Bacteria - 293370; Metazoa - 110143; Fungi - 18083; Plants - 34749; Viruses - 34404; Other Eukaryotes - 15836 (source: NCBI BLink). & (reliability: 338.0) & (original description: no original description)","protein_coding" "PSME_00048195-RA","No alias","Pseudotsuga menziesii","(q7xt40|exb15_orysa : 117.0) Expansin-B15 precursor (OsEXPB15) (Beta-expansin-15) (OsaEXPb1.16) - Oryza sativa (Rice) & (at2g20750 : 115.0) member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio); expansin B1 (EXPB1); INVOLVED IN: plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B3 (TAIR:AT4G28250.1); Has 2076 Blast hits to 2069 proteins in 143 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 9; Plants - 2024; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). & (reliability: 230.0) & (original description: no original description)","protein_coding" "PSME_00048283-RA","No alias","Pseudotsuga menziesii","(at5g15350 : 107.0) early nodulin-like protein 17 (ENODL17); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to plasma membrane, plasma membrane, vacuole, anchored to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: early nodulin-like protein 19 (TAIR:AT4G12880.1); Has 1394 Blast hits to 1353 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1394; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 214.0) & (original description: no original description)","protein_coding" "PSME_00048284-RA","No alias","Pseudotsuga menziesii","(at1g70610 : 127.0) member of TAP subfamily; transporter associated with antigen processing protein 1 (TAP1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1); Has 433965 Blast hits to 389325 proteins in 4163 species: Archae - 7467; Bacteria - 334124; Metazoa - 10295; Fungi - 7727; Plants - 5683; Viruses - 22; Other Eukaryotes - 68647 (source: NCBI BLink). & (q6yuu5|mdr_orysa : 91.7) Putative multidrug resistance protein (P-glycoprotein) - Oryza sativa (Rice) & (reliability: 254.0) & (original description: no original description)","protein_coding" "PSME_00048313-RA","No alias","Pseudotsuga menziesii","(at4g02750 : 194.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). & (reliability: 356.0) & (original description: no original description)","protein_coding" "PSME_00048393-RA","No alias","Pseudotsuga menziesii","(at1g20370 : 464.0) Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA, C-terminal (InterPro:IPR020095), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT1G76120.1); Has 3883 Blast hits to 3550 proteins in 1359 species: Archae - 140; Bacteria - 2302; Metazoa - 346; Fungi - 312; Plants - 197; Viruses - 0; Other Eukaryotes - 586 (source: NCBI BLink). & (reliability: 928.0) & (original description: no original description)","protein_coding" "PSME_00048494-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00048509-RA","No alias","Pseudotsuga menziesii","(p48419|c75a3_pethy : 658.0) Flavonoid 3',5'-hydroxylase 2 (EC 1.14.13.88) (F3'5'H) (Cytochrome P450 75A3) (CYPLXXVA3) - Petunia hybrida (Petunia) & (at5g07990 : 456.0) Required for flavonoid 3' hydroxylase activity.; TRANSPARENT TESTA 7 (TT7); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 706, subfamily A, polypeptide 6 (TAIR:AT4G12320.1); Has 35179 Blast hits to 34934 proteins in 1774 species: Archae - 51; Bacteria - 4733; Metazoa - 12156; Fungi - 7299; Plants - 9637; Viruses - 3; Other Eukaryotes - 1300 (source: NCBI BLink). & (reliability: 912.0) & (original description: no original description)","protein_coding" "PSME_00048530-RA","No alias","Pseudotsuga menziesii","(at2g32390 : 168.0) Encodes a ionotropic glutamate receptor ortholog, a member of a putative ligand-gated ion channel subunit family; glutamate receptor 3.5 (GLR3.5); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 3.4 (TAIR:AT1G05200.2). & (q7xp59|glr31_orysa : 146.0) Glutamate receptor 3.1 precursor (Ligand-gated ion channel 3.1) - Oryza sativa (Rice) & (reliability: 336.0) & (original description: no original description)","protein_coding" "PSME_00048633-RA","No alias","Pseudotsuga menziesii","(p22196|per2_arahy : 317.0) Cationic peroxidase 2 precursor (EC 1.11.1.7) (PNPC2) - Arachis hypogaea (Peanut) & (at5g64120 : 307.0) encodes a cell wall bound peroxidase that is induced by hypo-osmolarity; Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity; INVOLVED IN: defense response to fungus, N-terminal protein myristoylation, respiratory burst; LOCATED IN: apoplast, cell wall, membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G39580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 614.0) & (original description: no original description)","protein_coding" "PSME_00048796-RA","No alias","Pseudotsuga menziesii","(at5g05940 : 100.0) Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.; ROP guanine nucleotide exchange factor 5 (ROPGEF5); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 7 (TAIR:AT5G02010.1); Has 303 Blast hits to 301 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 303; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 200.0) & (original description: no original description)","protein_coding" "PSME_00048818-RA","No alias","Pseudotsuga menziesii","(at3g48090 : 119.0) Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases.; enhanced disease susceptibility 1 (EDS1); CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G48080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 238.0) & (original description: no original description)","protein_coding" "PSME_00048846-RA","No alias","Pseudotsuga menziesii","(at5g19320 : 239.0) Encodes RAN GTPase activating protein 2. The protein is localized to the nuclear envelope during interphase.; RAN GTPase activating protein 2 (RANGAP2); FUNCTIONS IN: RAN GTPase activator activity; INVOLVED IN: response to salt stress, nucleocytoplasmic transport; LOCATED IN: nuclear envelope, endoplasmic reticulum, plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RAN GTPase activating protein 1 (TAIR:AT3G63130.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 478.0) & (original description: no original description)","protein_coding" "PSME_00049030-RA","No alias","Pseudotsuga menziesii","(at3g11710 : 199.0) lysyl-tRNA synthetase 1 (ATKRS-1); FUNCTIONS IN: ATP binding, lysine-tRNA ligase activity; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Lysyl-tRNA synthetase, class II (InterPro:IPR002313), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 24040 Blast hits to 20328 proteins in 2969 species: Archae - 380; Bacteria - 16623; Metazoa - 629; Fungi - 774; Plants - 209; Viruses - 0; Other Eukaryotes - 5425 (source: NCBI BLink). & (q6f2u9|syk_orysa : 190.0) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) - Oryza sativa (Rice) & (reliability: 398.0) & (original description: no original description)","protein_coding" "PSME_00049296-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00049304-RA","No alias","Pseudotsuga menziesii","(at1g35710 : 275.0) Protein kinase family protein with leucine-rich repeat domain; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, active site (InterPro:IPR008266), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT4G08850.1); Has 304074 Blast hits to 147448 proteins in 4766 species: Archae - 178; Bacteria - 29187; Metazoa - 106993; Fungi - 12531; Plants - 120860; Viruses - 430; Other Eukaryotes - 33895 (source: NCBI BLink). & (q8lpb4|pskr_dauca : 243.0) Phytosulfokine receptor precursor (EC 2.7.11.1) (Phytosulfokine LRR receptor kinase) - Daucus carota (Carrot) & (reliability: 520.0) & (original description: no original description)","protein_coding" "PSME_00049410-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 285.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 279.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 570.0) & (original description: no original description)","protein_coding" "PSME_00049553-RA","No alias","Pseudotsuga menziesii","(at3g10210 : 152.0) SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT4G35750.1); Has 394 Blast hits to 394 proteins in 72 species: Archae - 0; Bacteria - 0; Metazoa - 260; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). & (reliability: 304.0) & (original description: no original description)","protein_coding" "PSME_00049607-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00049653-RA","No alias","Pseudotsuga menziesii","(at5g43830 : 95.5) Aluminium induced protein with YGL and LRDR motifs; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: Aluminium induced protein with YGL and LRDR motifs (TAIR:AT3G22850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p24805|tsjt1_tobac : 80.5) Stem-specific protein TSJT1 - Nicotiana tabacum (Common tobacco) & (reliability: 191.0) & (original description: no original description)","protein_coding" "PSME_00049817-RA","No alias","Pseudotsuga menziesii","(at5g63840 : 224.0) radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme.; RADIAL SWELLING 3 (RSW3); FUNCTIONS IN: glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to cadmium ion, cellulose biosynthetic process, defense response to bacterium, unidimensional cell growth; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322); BEST Arabidopsis thaliana protein match is: heteroglycan glucosidase 1 (TAIR:AT3G23640.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 448.0) & (original description: no original description)","protein_coding" "PSME_00049901-RA","No alias","Pseudotsuga menziesii","(at5g48930 : 465.0) At5g48930 has been shown to encode for the hydroxycinnamoyl-Coenzyme A shikimate/quinate hydroxycinnamoyltransferase (HCT) both synthesizing and catabolizing the hydroxycinnamoylesters (coumaroyl/caffeoyl shikimate and quinate) involved in the phenylpropanoid pathway. Influence on the accumulation of flavonoids which in turn inhibit auxin transport and reduce plant growth.; hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (HCT); CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G57840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o23917|hcbt2_diaca : 298.0) Anthranilate N-benzoyltransferase protein 2 (EC 2.3.1.144) (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 2) - Dianthus caryophyllus (Carnation) (Clove pink) & (reliability: 930.0) & (original description: no original description)","protein_coding" "PSME_00049912-RA","No alias","Pseudotsuga menziesii","(at2g32390 : 138.0) Encodes a ionotropic glutamate receptor ortholog, a member of a putative ligand-gated ion channel subunit family; glutamate receptor 3.5 (GLR3.5); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 3.4 (TAIR:AT1G05200.2). & (q7xp59|glr31_orysa : 114.0) Glutamate receptor 3.1 precursor (Ligand-gated ion channel 3.1) - Oryza sativa (Rice) & (reliability: 254.0) & (original description: no original description)","protein_coding" "PSME_00050006-RA","No alias","Pseudotsuga menziesii","(at3g48090 : 113.0) Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases.; enhanced disease susceptibility 1 (EDS1); CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G48080.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 206.0) & (original description: no original description)","protein_coding" "PSME_00050007-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00050009-RA","No alias","Pseudotsuga menziesii","(at5g63840 : 194.0) radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme.; RADIAL SWELLING 3 (RSW3); FUNCTIONS IN: glucosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: response to cadmium ion, cellulose biosynthetic process, defense response to bacterium, unidimensional cell growth; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 31 (InterPro:IPR000322); BEST Arabidopsis thaliana protein match is: heteroglycan glucosidase 1 (TAIR:AT3G23640.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 388.0) & (original description: no original description)","protein_coding" "PSME_00050027-RA","No alias","Pseudotsuga menziesii","(at3g58690 : 164.0) Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G54820.1); Has 119556 Blast hits to 118228 proteins in 3954 species: Archae - 119; Bacteria - 14059; Metazoa - 43160; Fungi - 10190; Plants - 33928; Viruses - 396; Other Eukaryotes - 17704 (source: NCBI BLink). & (q8lkz1|nork_pea : 80.5) Nodulation receptor kinase precursor (EC 2.7.11.1) - Pisum sativum (Garden pea) & (reliability: 328.0) & (original description: no original description)","protein_coding" "PSME_00050038-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00050395-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00050713-RA","No alias","Pseudotsuga menziesii","(at1g72250 : 94.4) Di-glucose binding protein with Kinesin motor domain; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Malectin/receptor-like protein kinase (InterPro:IPR021720), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: Di-glucose binding protein with Kinesin motor domain (TAIR:AT2G22610.2). & (reliability: 188.8) & (original description: no original description)","protein_coding" "PSME_00050874-RA","No alias","Pseudotsuga menziesii",""(at5g23190 : 287.0) cytochrome P450 CYP86B1, nuclear gene for chloroplast product. CYP86B1 is a very long chain fatty acid hydroxylase specifically involved in polyester monomer biosynthesis during the course of plant development.; ""cytochrome P450, family 86, subfamily B, polypeptide 1"" (CYP86B1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: very long-chain fatty acid biosynthetic process, suberin biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: Cytochrome P450 superfamily protein (TAIR:AT5G08250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 574.0) & (original description: no original description)"","protein_coding" "PSME_00050888-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00051003-RA","No alias","Pseudotsuga menziesii","(at3g12580 : 785.0) heat shock protein 70 (HSP70); FUNCTIONS IN: ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: cytosol, mitochondrion, cell wall, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock cognate protein 70-1 (TAIR:AT5G02500.1); Has 34126 Blast hits to 33731 proteins in 4830 species: Archae - 159; Bacteria - 16481; Metazoa - 3906; Fungi - 1752; Plants - 1258; Viruses - 310; Other Eukaryotes - 10260 (source: NCBI BLink). & (p09189|hsp7c_pethy : 776.0) Heat shock cognate 70 kDa protein - Petunia hybrida (Petunia) & (reliability: 1570.0) & (original description: no original description)","protein_coding" "PSME_00051069-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00051090-RA","No alias","Pseudotsuga menziesii","(at4g17610 : 167.0) tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537); Has 6630 Blast hits to 6614 proteins in 1865 species: Archae - 7; Bacteria - 4787; Metazoa - 103; Fungi - 50; Plants - 109; Viruses - 0; Other Eukaryotes - 1574 (source: NCBI BLink). & (reliability: 334.0) & (original description: no original description)","protein_coding" "PSME_00051330-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00051333-RA","No alias","Pseudotsuga menziesii","(at1g68320 : 167.0) putative transcription factor: R2R3-MYB transcription family. Involved in regulation of phosphate starvation responses and gibberellic acid biosynthesis.; myb domain protein 62 (MYB62); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 116 (TAIR:AT1G25340.1); Has 8752 Blast hits to 8056 proteins in 466 species: Archae - 0; Bacteria - 0; Metazoa - 739; Fungi - 492; Plants - 5746; Viruses - 3; Other Eukaryotes - 1772 (source: NCBI BLink). & (q4jl76|myba2_orysa : 164.0) Myb-related protein MYBAS2 - Oryza sativa (Rice) & (reliability: 334.0) & (original description: no original description)","protein_coding" "PSME_00051432-RA","No alias","Pseudotsuga menziesii","(at3g54420 : 213.0) encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.; homolog of carrot EP3-3 chitinase (EP3); FUNCTIONS IN: chitinase activity; INVOLVED IN: somatic embryogenesis, plant-type hypersensitive response; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2660 Blast hits to 2432 proteins in 504 species: Archae - 0; Bacteria - 547; Metazoa - 34; Fungi - 178; Plants - 1776; Viruses - 22; Other Eukaryotes - 103 (source: NCBI BLink). & (p29022|chia_maize : 201.0) Endochitinase A precursor (EC 3.2.1.14) (Seed chitinase A) - Zea mays (Maize) & (reliability: 426.0) & (original description: no original description)","protein_coding" "PSME_00051615-RA","No alias","Pseudotsuga menziesii","(at5g55300 : 586.0) Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. Functions in stem cell maintenance at all stages of shoot and floral meristems and in the regulation of gene silencing.; DNA topoisomerase I alpha (TOP1ALPHA); FUNCTIONS IN: protein binding, DNA topoisomerase type I activity; INVOLVED IN: in 8 processes; LOCATED IN: chromosome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499); BEST Arabidopsis thaliana protein match is: DNA topoisomerase 1 beta (TAIR:AT5G55310.1). & (p93119|top1_dauca : 513.0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) - Daucus carota (Carrot) & (reliability: 1172.0) & (original description: no original description)","protein_coding" "PSME_00051693-RA","No alias","Pseudotsuga menziesii","(at4g13930 : 200.0) Encodes a serine hydroxymethyltransferase maximally expressed in root; serine hydroxymethyltransferase 4 (SHM4); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: response to cadmium ion, glycine metabolic process, L-serine metabolic process; LOCATED IN: cytosol, plasma membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT4G13890.1); Has 11689 Blast hits to 11661 proteins in 2862 species: Archae - 259; Bacteria - 6437; Metazoa - 341; Fungi - 289; Plants - 375; Viruses - 6; Other Eukaryotes - 3982 (source: NCBI BLink). & (p34899|glym_pea : 127.0) Serine hydroxymethyltransferase, mitochondrial precursor (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) - Pisum sativum (Garden pea) & (reliability: 400.0) & (original description: no original description)","protein_coding" "PSME_00052135-RA","No alias","Pseudotsuga menziesii","(at4g02050 : 119.0) sugar transporter protein 7 (STP7); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G26340.1); Has 26348 Blast hits to 25870 proteins in 1897 species: Archae - 376; Bacteria - 11847; Metazoa - 3711; Fungi - 6732; Plants - 2516; Viruses - 0; Other Eukaryotes - 1166 (source: NCBI BLink). & (q10710|sta_ricco : 109.0) Sugar carrier protein A - Ricinus communis (Castor bean) & (reliability: 238.0) & (original description: no original description)","protein_coding" "PSME_00052198-RA","No alias","Pseudotsuga menziesii","(at3g02750 : 152.0) Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G36250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 304.0) & (original description: no original description)","protein_coding" "PSME_00052249-RA","No alias","Pseudotsuga menziesii","(at1g55860 : 283.0) encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.; ubiquitin-protein ligase 1 (UPL1); CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), E3 ubiquitin ligase, domain of unknown function DUF913 (InterPro:IPR010314), Ubiquitin interacting motif (InterPro:IPR003903), E3 ubiquitin ligase, domain of unknown function DUF908 (InterPro:IPR010309), HECT (InterPro:IPR000569), Armadillo-type fold (InterPro:IPR016024), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 2 (TAIR:AT1G70320.1). & (reliability: 566.0) & (original description: no original description)","protein_coding" "PSME_00052285-RA","No alias","Pseudotsuga menziesii","(at3g48070 : 116.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G62910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 232.0) & (original description: no original description)","protein_coding" "PSME_00052400-RA","No alias","Pseudotsuga menziesii","(at2g22480 : 158.0) phosphofructokinase 5 (PFK5); CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase TP0108 (InterPro:IPR012004), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: phosphofructokinase 4 (TAIR:AT5G61580.1); Has 7923 Blast hits to 7389 proteins in 2127 species: Archae - 28; Bacteria - 5127; Metazoa - 660; Fungi - 395; Plants - 392; Viruses - 2; Other Eukaryotes - 1319 (source: NCBI BLink). & (reliability: 316.0) & (original description: no original description)","protein_coding" "PSME_00052429-RA","No alias","Pseudotsuga menziesii","(at1g26850 : 106.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G18030.1); Has 1039 Blast hits to 1012 proteins in 98 species: Archae - 0; Bacteria - 124; Metazoa - 0; Fungi - 0; Plants - 910; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). & (reliability: 212.0) & (original description: no original description)","protein_coding" "PSME_00052536-RA","No alias","Pseudotsuga menziesii","(at5g67270 : 108.0) encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.; end binding protein 1C (EB1C); CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), EB1, C-terminal (InterPro:IPR004953); BEST Arabidopsis thaliana protein match is: microtubule end binding protein EB1A (TAIR:AT3G47690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description)","protein_coding" "PSME_00052597-RA","No alias","Pseudotsuga menziesii","(at1g77180 : 306.0) Encodes a putative transcriptional factor. Shows transcriptional activator activity in yeast. Involved in response to abscisic acid, salt and osmotic stress.; SKIP; CONTAINS InterPro DOMAIN/s: SKI-interacting protein, SKIP (InterPro:IPR017862), SKI-interacting protein SKIP, SNW domain (InterPro:IPR004015). & (reliability: 612.0) & (original description: no original description)","protein_coding" "PSME_00052609-RA","No alias","Pseudotsuga menziesii","(at4g21160 : 117.0) ADP-ribosylation factor GTPase-activating protein containing zinc finger and C2 domains and a novel PI-3-P-binding protein region. Binds PI-3-P. Highest expression levels in flowering tissue, rosettes and roots. A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.; ZAC; FUNCTIONS IN: phospholipid binding, ARF GTPase activator activity; INVOLVED IN: intracellular protein transport; LOCATED IN: Golgi apparatus, plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 13 (TAIR:AT4G05330.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description)","protein_coding" "PSME_00052715-RA","No alias","Pseudotsuga menziesii","(p28002|comt1_medsa : 235.0) Caffeic acid 3-O-methyltransferase (EC 2.1.1.68) (S-adenosysl-L-methionine:caffeic acid 3-O-methyltransferase) (COMT) (CAOMT) - Medicago sativa (Alfalfa) & (at5g54160 : 231.0) A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3í-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3í-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase; O-methyltransferase 1 (OMT1); FUNCTIONS IN: myricetin 3'-O-methyltransferase activity, quercetin 3-O-methyltransferase activity, caffeate O-methyltransferase activity; INVOLVED IN: lignin biosynthetic process, flavonol biosynthetic process; LOCATED IN: cytosol, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G77520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 462.0) & (original description: no original description)","protein_coding" "PSME_00052931-RA","No alias","Pseudotsuga menziesii","(q6yuu5|mdr_orysa : 511.0) Putative multidrug resistance protein (P-glycoprotein) - Oryza sativa (Rice) & (at3g28345 : 492.0) ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: shoot apex, inflorescence meristem, cotyledon, hypocotyl, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 17 (TAIR:AT3G28380.1); Has 822177 Blast hits to 385706 proteins in 4160 species: Archae - 14477; Bacteria - 641696; Metazoa - 17642; Fungi - 12086; Plants - 9535; Viruses - 48; Other Eukaryotes - 126693 (source: NCBI BLink). & (reliability: 984.0) & (original description: no original description)","protein_coding" "PSME_00052963-RA","No alias","Pseudotsuga menziesii","(p41643|psbc_pinth : 112.0) Photosystem II 44 kDa reaction center protein (P6 protein) (CP43) - Pinus thunbergii (Green pine) (Japanese black pine) & (atcg00280 : 102.0) chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element.; photosystem II reaction center protein C (PSBC); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light reaction; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem antenna protein-like (InterPro:IPR000932), Photosystem II protein PsbC (InterPro:IPR005869); BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein B (TAIR:ATCG00680.1). & (reliability: 204.0) & (original description: no original description)","protein_coding" "PSME_00053013-RA","No alias","Pseudotsuga menziesii","(q6k215|pip22_orysa : 93.6) Probable aquaporin PIP2.2 (Plasma membrane intrinsic protein 2.2) (OsPIP2.2) - Oryza sativa (Rice) & (at1g01620 : 93.2) a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development.; plasma membrane intrinsic protein 1C (PIP1C); FUNCTIONS IN: water channel activity; INVOLVED IN: response to water deprivation, response to salt stress, transport, water transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 1;4 (TAIR:AT4G00430.1); Has 10489 Blast hits to 10479 proteins in 2194 species: Archae - 80; Bacteria - 5080; Metazoa - 1452; Fungi - 437; Plants - 2488; Viruses - 2; Other Eukaryotes - 950 (source: NCBI BLink). & (reliability: 186.4) & (original description: no original description)","protein_coding" "PSME_00053117-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00053177-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00053480-RA","No alias","Pseudotsuga menziesii","(p10976|nltp_spiol : 97.4) Nonspecific lipid-transfer protein precursor (LTP) (Phospholipid transfer protein) (PLTP) - Spinacia oleracea (Spinach) & (at2g18370 : 95.9) Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.; Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, embryo, hypocotyl, male gametophyte, root; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein 6 (TAIR:AT3G08770.1); Has 1059 Blast hits to 1058 proteins in 125 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1055; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). & (reliability: 189.4) & (original description: no original description)","protein_coding" "PSME_00053707-RA","No alias","Pseudotsuga menziesii","(at4g23290 : 101.0) Encodes a cysteine-rich receptor-like protein kinase.; cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (CRK21); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: mitochondrion; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 30 (TAIR:AT4G11460.1); Has 118308 Blast hits to 116879 proteins in 4391 species: Archae - 92; Bacteria - 13400; Metazoa - 43403; Fungi - 10140; Plants - 33618; Viruses - 391; Other Eukaryotes - 17264 (source: NCBI BLink). & (reliability: 193.4) & (original description: no original description)","protein_coding" "PSME_00053719-RA","No alias","Pseudotsuga menziesii","(at4g10440 : 107.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G33170.1); Has 1162 Blast hits to 1152 proteins in 127 species: Archae - 5; Bacteria - 186; Metazoa - 0; Fungi - 2; Plants - 957; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). & (reliability: 214.0) & (original description: no original description)","protein_coding" "PSME_00053778-RA","No alias","Pseudotsuga menziesii","(at2g19070 : 155.0) encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091); spermidine hydroxycinnamoyl transferase (SHT); CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (TAIR:AT5G48930.1); Has 2876 Blast hits to 2852 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 114; Plants - 2754; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). & (o24645|hcbt1_diaca : 141.0) Anthranilate N-benzoyltransferase protein 1 (EC 2.3.1.144) (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 1) - Dianthus caryophyllus (Carnation) (Clove pink) & (reliability: 310.0) & (original description: no original description)","protein_coding" "PSME_00053918-RA","No alias","Pseudotsuga menziesii","(q03467|e13b_pea : 104.0) Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) - Pisum sativum (Garden pea) & (at2g01630 : 93.6) O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT1G66250.1); Has 2147 Blast hits to 2131 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 5; Plants - 2133; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). & (reliability: 178.0) & (original description: no original description)","protein_coding" "PSME_00053952-RA","No alias","Pseudotsuga menziesii","(at1g53680 : 144.0) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).; glutathione S-transferase TAU 28 (GSTU28); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: response to cadmium ion, toxin catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 25 (TAIR:AT1G17180.1); Has 6308 Blast hits to 6256 proteins in 1129 species: Archae - 0; Bacteria - 2948; Metazoa - 456; Fungi - 175; Plants - 1987; Viruses - 0; Other Eukaryotes - 742 (source: NCBI BLink). & (p49332|gstxc_tobac : 143.0) Probable glutathione S-transferase parC (EC 2.5.1.18) (Auxin-regulated protein parC) - Nicotiana tabacum (Common tobacco) & (reliability: 288.0) & (original description: no original description)","protein_coding" "PSME_00054049-RA","No alias","Pseudotsuga menziesii","(at2g30110 : 507.0) Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined. Mutant is able to revert the constitutive defense responses phenotype of snc1, which indicates the gene is involved in defense response. It also indicates that ubiquitination plays a role in plant defense signalling.; ubiquitin-activating enzyme 1 (UBA1); FUNCTIONS IN: ubiquitin-protein ligase activity, ubiquitin activating enzyme activity; INVOLVED IN: response to cadmium ion, response to other organism, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-activating enzyme, E1, active site (InterPro:IPR018074), Ubiquitin-activating enzyme, E1 (InterPro:IPR018075), Ubiquitin-activating enzyme e1, C-terminal (InterPro:IPR018965), Ubiquitin-activating enzyme repeat (InterPro:IPR000127), Ubiquitin-activating enzyme (InterPro:IPR019572), UBA/THIF-type NAD/FAD binding fold (InterPro:IPR000594), Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding domain (InterPro:IPR016040), Ubiquitin-activating enzyme, E1-like (InterPro:IPR000011); BEST Arabidopsis thaliana protein match is: ubiquitin activating enzyme 2 (TAIR:AT5G06460.1); Has 19490 Blast hits to 12603 proteins in 2346 species: Archae - 393; Bacteria - 11015; Metazoa - 2131; Fungi - 1366; Plants - 791; Viruses - 0; Other Eukaryotes - 3794 (source: NCBI BLink). & (p31251|ube12_wheat : 501.0) Ubiquitin-activating enzyme E1 2 - Triticum aestivum (Wheat) & (reliability: 1014.0) & (original description: no original description)","protein_coding" "PSME_00054148-RA","No alias","Pseudotsuga menziesii","(at4g10950 : 179.0) SGNH hydrolase-type esterase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT5G08460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 358.0) & (original description: no original description)","protein_coding" "PSME_00054280-RA","No alias","Pseudotsuga menziesii","(at3g04610 : 83.6) flowering locus KH domain (FLK); FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: positive regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT4G26000.1); Has 8156 Blast hits to 5360 proteins in 381 species: Archae - 0; Bacteria - 269; Metazoa - 3587; Fungi - 776; Plants - 1209; Viruses - 216; Other Eukaryotes - 2099 (source: NCBI BLink). & (reliability: 161.0) & (original description: no original description)","protein_coding" "PSME_00054364-RA","No alias","Pseudotsuga menziesii","(at5g07990 : 382.0) Required for flavonoid 3' hydroxylase activity.; TRANSPARENT TESTA 7 (TT7); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 706, subfamily A, polypeptide 6 (TAIR:AT4G12320.1); Has 35179 Blast hits to 34934 proteins in 1774 species: Archae - 51; Bacteria - 4733; Metazoa - 12156; Fungi - 7299; Plants - 9637; Viruses - 3; Other Eukaryotes - 1300 (source: NCBI BLink). & (q9sbq9|f3ph_pethy : 365.0) Flavonoid 3'-monooxygenase (EC 1.14.13.21) (Flavonoid 3'-hydroxylase) (Cytochrome P450 75B2) - Petunia hybrida (Petunia) & (reliability: 764.0) & (original description: no original description)","protein_coding" "PSME_00054445-RA","No alias","Pseudotsuga menziesii","(at1g52880 : 131.0) Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo.; NO APICAL MERISTEM (NAM); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 2 (TAIR:AT3G15510.1); Has 3040 Blast hits to 3032 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 3034; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (q53nf7|nac71_orysa : 111.0) NAC domain-containing protein 71 (ONAC071) - Oryza sativa (Rice) & (reliability: 256.0) & (original description: no original description)","protein_coding" "PSME_00054467-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00054493-RA","No alias","Pseudotsuga menziesii","(at3g44670 : 82.0) Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response to bacterium, defense response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT3G44480.1); Has 43078 Blast hits to 25516 proteins in 938 species: Archae - 40; Bacteria - 3512; Metazoa - 4196; Fungi - 281; Plants - 32050; Viruses - 26; Other Eukaryotes - 2973 (source: NCBI BLink). & (reliability: 164.0) & (original description: no original description)","protein_coding" "PSME_00054712-RA","No alias","Pseudotsuga menziesii","(p31110|tlp_orysa : 201.0) Thaumatin-like protein precursor - Oryza sativa (Rice) & (at4g11650 : 151.0) osmotin-like protein; osmotin 34 (OSM34); INVOLVED IN: defense response to fungus, incompatible interaction, response to salt stress, defense response to bacterium, incompatible interaction, response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Thaumatin, conserved site (InterPro:IPR017949), Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: Pathogenesis-related thaumatin superfamily protein (TAIR:AT1G75050.1); Has 1614 Blast hits to 1589 proteins in 184 species: Archae - 0; Bacteria - 39; Metazoa - 52; Fungi - 83; Plants - 1427; Viruses - 3; Other Eukaryotes - 10 (source: NCBI BLink). & (reliability: 302.0) & (original description: no original description)","protein_coding" "PSME_00054752-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00055075-RA","No alias","Pseudotsuga menziesii","(at1g64890 : 228.0) Major facilitator superfamily protein; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G04570.1); Has 1088 Blast hits to 1079 proteins in 365 species: Archae - 17; Bacteria - 560; Metazoa - 42; Fungi - 5; Plants - 247; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink). & (reliability: 456.0) & (original description: no original description)","protein_coding" "PSME_00055143-RA","No alias","Pseudotsuga menziesii","(at5g25610 : 193.0) responsive to dehydration 22 (RD22) mediated by ABA; RESPONSIVE TO DESSICATION 22 (RD22); FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: response to desiccation, response to salt stress, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BURP (InterPro:IPR004873); BEST Arabidopsis thaliana protein match is: unknown seed protein like 1 (TAIR:AT1G49320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p21745|ea30_vicfa : 100.0) Embryonic abundant protein VF30.1 precursor - Vicia faba (Broad bean) & (reliability: 386.0) & (original description: no original description)","protein_coding" "PSME_00055145-RA","No alias","Pseudotsuga menziesii","(at5g59720 : 86.7) encodes a low molecular weight heat shock protein that contains the heat shock element in the promoter region. Expression is induced in response to heat shock.; heat shock protein 18.2 (HSP18.2); CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G53540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q84q72|hsp24_orysa : 84.3) 17.4 kDa class I heat shock protein 4 - Oryza sativa (Rice) & (reliability: 173.4) & (original description: no original description)","protein_coding" "PSME_00055184-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00055207-RA","No alias","Pseudotsuga menziesii","(p09189|hsp7c_pethy : 1035.0) Heat shock cognate 70 kDa protein - Petunia hybrida (Petunia) & (at3g12580 : 1027.0) heat shock protein 70 (HSP70); FUNCTIONS IN: ATP binding; INVOLVED IN: in 9 processes; LOCATED IN: cytosol, mitochondrion, cell wall, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock cognate protein 70-1 (TAIR:AT5G02500.1); Has 34126 Blast hits to 33731 proteins in 4830 species: Archae - 159; Bacteria - 16481; Metazoa - 3906; Fungi - 1752; Plants - 1258; Viruses - 310; Other Eukaryotes - 10260 (source: NCBI BLink). & (reliability: 2054.0) & (original description: no original description)","protein_coding" "PSME_00055393-RA","No alias","Pseudotsuga menziesii","(at5g55300 : 98.6) Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. Functions in stem cell maintenance at all stages of shoot and floral meristems and in the regulation of gene silencing.; DNA topoisomerase I alpha (TOP1ALPHA); FUNCTIONS IN: protein binding, DNA topoisomerase type I activity; INVOLVED IN: in 8 processes; LOCATED IN: chromosome; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499); BEST Arabidopsis thaliana protein match is: DNA topoisomerase 1 beta (TAIR:AT5G55310.1). & (p93119|top1_dauca : 94.4) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) - Daucus carota (Carrot) & (reliability: 197.2) & (original description: no original description)","protein_coding" "PSME_00055413-RA","No alias","Pseudotsuga menziesii","(at2g35780 : 122.0) serine carboxypeptidase-like 26 (scpl26); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 27 (TAIR:AT3G07990.1); Has 3733 Blast hits to 3660 proteins in 399 species: Archae - 0; Bacteria - 269; Metazoa - 644; Fungi - 857; Plants - 1549; Viruses - 0; Other Eukaryotes - 414 (source: NCBI BLink). & (p52711|cbp23_horvu : 112.0) Serine carboxypeptidase II-3 precursor (EC 3.4.16.6) (CP-MII.3) [Contains: Serine carboxypeptidase II-3 chain A; Serine carboxypeptidase II-3 chain B] - Hordeum vulgare (Barley) & (reliability: 244.0) & (original description: no original description)","protein_coding" "PSME_00055551-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00055611-RA","No alias","Pseudotsuga menziesii","(at3g19820 : 952.0) Involved in the conversion of the early brassinosteroid precursor 24-methylenecholesterol to campesterol. Brassinosteroids affect cellular elongation. Mutants have dwarf phenotype. DWF1 is a Ca2+-dependent calmodulin-binding protein.; DWARF 1 (DWF1); CONTAINS InterPro DOMAIN/s: FAD-linked oxidase, FAD-binding, subdomain 2 (InterPro:IPR016168), FAD-binding, type 2 (InterPro:IPR016166), FAD linked oxidase, N-terminal (InterPro:IPR006094). & (p93472|dim_pea : 941.0) Cell elongation protein diminuto - Pisum sativum (Garden pea) & (reliability: 1904.0) & (original description: no original description)","protein_coding" "PSME_00055695-RA","No alias","Pseudotsuga menziesii","(at2g19490 : 239.0) recA DNA recombination family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA repair, SOS response, DNA recombination, DNA metabolic process; CONTAINS InterPro DOMAIN/s: DNA recombination/repair protein RecA/RadB, ATP-binding domain (InterPro:IPR020588), ATPase, AAA+ type, core (InterPro:IPR003593), DNA recombination/repair protein RecA, conserved site (InterPro:IPR020584), DNA recombination and repair protein RecA (InterPro:IPR013765), DNA recombination/repair protein RecA, monomer-monomer interface (InterPro:IPR020587); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G32920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 478.0) & (original description: no original description)","protein_coding" "PSME_00055747-RA","No alias","Pseudotsuga menziesii","(at3g53720 : 102.0) member of Putative Na+/H+ antiporter family. Involved in the osmoregulation through K(+) fluxes and possibly pH modulation of an active endomembrane system in guard cells.; cation/H+ exchanger 20 (CHX20); CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 18 (TAIR:AT5G41610.1); Has 10038 Blast hits to 10006 proteins in 2135 species: Archae - 380; Bacteria - 7898; Metazoa - 11; Fungi - 167; Plants - 678; Viruses - 0; Other Eukaryotes - 904 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description)","protein_coding" "PSME_00055819-RA","No alias","Pseudotsuga menziesii","(at3g02645 : 151.0) Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50150.1). & (reliability: 302.0) & (original description: no original description)","protein_coding" "PSME_00055822-RA","No alias","Pseudotsuga menziesii","(at5g17540 : 331.0) HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (TAIR:AT3G03480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o24645|hcbt1_diaca : 179.0) Anthranilate N-benzoyltransferase protein 1 (EC 2.3.1.144) (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 1) - Dianthus caryophyllus (Carnation) (Clove pink) & (reliability: 662.0) & (original description: no original description)","protein_coding" "PSME_00055839-RA","No alias","Pseudotsuga menziesii","(at2g44710 : 308.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G00830.2); Has 31429 Blast hits to 23398 proteins in 2969 species: Archae - 812; Bacteria - 21040; Metazoa - 874; Fungi - 1027; Plants - 329; Viruses - 0; Other Eukaryotes - 7347 (source: NCBI BLink). & (reliability: 616.0) & (original description: no original description)","protein_coding" "PSME_00055841-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00055848-RA","No alias","Pseudotsuga menziesii","(at4g24050 : 95.1) NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G64590.1); Has 59308 Blast hits to 59247 proteins in 3068 species: Archae - 448; Bacteria - 39701; Metazoa - 3820; Fungi - 3579; Plants - 1905; Viruses - 0; Other Eukaryotes - 9855 (source: NCBI BLink). & (reliability: 190.2) & (original description: no original description)","protein_coding" "PSME_00055931-RA","No alias","Pseudotsuga menziesii","(at5g60020 : 427.0) putative laccase, a member of laccase family of genes (17 members in Arabidopsis).; laccase 17 (LAC17); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 2 (TAIR:AT2G29130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p14133|aso_cucsa : 127.0) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase) (ASO) - Cucumis sativus (Cucumber) & (reliability: 854.0) & (original description: no original description)","protein_coding" "PSME_00055932-RA","No alias","Pseudotsuga menziesii","(at3g04610 : 125.0) flowering locus KH domain (FLK); FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: positive regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT4G26000.1); Has 8156 Blast hits to 5360 proteins in 381 species: Archae - 0; Bacteria - 269; Metazoa - 3587; Fungi - 776; Plants - 1209; Viruses - 216; Other Eukaryotes - 2099 (source: NCBI BLink). & (reliability: 238.0) & (original description: no original description)","protein_coding" "PSME_00055954-RA","No alias","Pseudotsuga menziesii","(at3g54950 : 326.0) patatin-like protein 6 (PLA IIIA); CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PATATIN-like protein 6 (TAIR:AT2G39220.1); Has 1058 Blast hits to 1055 proteins in 202 species: Archae - 0; Bacteria - 325; Metazoa - 24; Fungi - 32; Plants - 544; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink). & (p15478|pat5_soltu : 116.0) Patatin T5 precursor (Potato tuber protein) - Solanum tuberosum (Potato) & (reliability: 652.0) & (original description: no original description)","protein_coding" "PSME_00056072-RA","No alias","Pseudotsuga menziesii","(at2g37900 : 126.0) Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT3G53960.1); Has 7031 Blast hits to 6882 proteins in 1319 species: Archae - 0; Bacteria - 3384; Metazoa - 508; Fungi - 445; Plants - 2220; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink). & (reliability: 252.0) & (original description: no original description)","protein_coding" "PSME_00056160-RA","No alias","Pseudotsuga menziesii","(at3g52500 : 87.8) Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G45120.1); Has 2297 Blast hits to 2281 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 122; Plants - 1871; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink). & (reliability: 175.6) & (original description: no original description)","protein_coding" "PSME_00056203-RA","No alias","Pseudotsuga menziesii","(q43133|ggpps_sinal : 412.0) Geranylgeranyl pyrophosphate synthetase, chloroplast precursor (GGPP synthetase) (GGPS) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] - Sinapis alb & (at4g36810 : 406.0) Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots.; geranylgeranyl pyrophosphate synthase 1 (GGPS1); FUNCTIONS IN: farnesyltranstransferase activity; INVOLVED IN: isoprenoid biosynthetic process; LOCATED IN: etioplast, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: Terpenoid synthases superfamily protein (TAIR:AT2G18620.1); Has 16617 Blast hits to 16612 proteins in 2936 species: Archae - 341; Bacteria - 9385; Metazoa - 291; Fungi - 423; Plants - 452; Viruses - 12; Other Eukaryotes - 5713 (source: NCBI BLink). & (reliability: 812.0) & (original description: no original description)","protein_coding" "Seita.1G011100.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.1G011900.1","No alias","Setaria italica ","substrate adaptor *(LRB) of CUL3-BTB E3 ubiquitin ligase complex","protein_coding" "Seita.1G088500.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.1G204600.1","No alias","Setaria italica ","cryptochrome photoreceptor *(CRY)","protein_coding" "Seita.1G241100.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.1G370400.1","No alias","Setaria italica ","RLCK-IV receptor-like protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Seita.1G375300.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.1G378700.1","No alias","Setaria italica ","miRNA recruiting factor (AGO) of RNA-induced silencing complex (RISC) assembly","protein_coding" "Seita.2G034600.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G129400.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G154500.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G161900.1","No alias","Setaria italica ","catalytic component *(PPX) of PP4 phosphatase complex & catalytic component *(PPX/HCR) of PP4 phosphatase complex & EC_3.1 hydrolase acting on ester bond","protein_coding" "Seita.2G174000.1","No alias","Setaria italica ","Rab GTPase-activating protein *(RabGAP10)","protein_coding" "Seita.2G181700.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G182900.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G237800.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G241200.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G242900.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G295800.1","No alias","Setaria italica ","regulatory protein *(ISTL) of ESCRT-mediated sorting","protein_coding" "Seita.2G322800.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G424800.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.3G031200.1","No alias","Setaria italica ","phosphatidylinositol 4-kinase *(PI4K-gamma)","protein_coding" "Seita.3G060700.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.3G070000.1","No alias","Setaria italica ","methylation reader *(ECT)","protein_coding" "Seita.3G095000.1","No alias","Setaria italica ","regulatory protein *(LARP6) of mRNA quality control","protein_coding" "Seita.3G107100.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.3G207100.1","No alias","Setaria italica ","EC_1.1 oxidoreductase acting on CH-OH group of donor","protein_coding" "Seita.3G236900.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.3G389000.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.3G393700.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.3G393900.1","No alias","Setaria italica ","hydroxyproline O-galactosyltransferase *(GALT) & hydroxyproline-O-galactosyltransferase *(GALT)","protein_coding" "Seita.4G038700.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.4G067100.1","No alias","Setaria italica ","peptide sulfotransferase *(SGN2) & tyrosyl protein sulfotransferase","protein_coding" "Seita.4G130800.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.4G205600.1","No alias","Setaria italica ","component *(SOP1) of PAXT RNA-exosome-activation complex","protein_coding" "Seita.4G257600.1","No alias","Setaria italica ","component *(HYC) of phosphatidylinositol 4-kinase complex","protein_coding" "Seita.4G274800.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.4G288900.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.5G008700.1","No alias","Setaria italica ","ubiquitin adaptor protein *(TOL)","protein_coding" "Seita.5G049500.1","No alias","Setaria italica ","non-specific cation channel *(PQL1)","protein_coding" "Seita.5G121800.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.5G191000.1","No alias","Setaria italica ","MLK-PP2C protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Seita.5G263300.1","No alias","Setaria italica ","RING-H2-class CTL-subclass E3 ubiquitin ligase","protein_coding" "Seita.5G266600.1","No alias","Setaria italica ","EC_3.6 hydrolase acting on acid anhydride","protein_coding" "Seita.5G326500.1","No alias","Setaria italica ","TCX/CPP-type transcription factor & component *(TCX5/6) of DREAM cell cycle regulatory complex","protein_coding" "Seita.5G356800.1","No alias","Setaria italica ","EC_3.2 glycosylase","protein_coding" "Seita.5G356900.1","No alias","Setaria italica ","class IV ARF-GAP ARF-GTPase-activating protein","protein_coding" "Seita.5G398600.1","No alias","Setaria italica ","EC_2.7 transferase transferring phosphorus-containing group & phosphatidylinositol 3-phosphate 5-kinase *(FAB1)","protein_coding" "Seita.5G417000.1","No alias","Setaria italica ","demethoxyubiquinone hydroxylase","protein_coding" "Seita.5G433000.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.5G433200.1","No alias","Setaria italica ","receptor protein *(AHK)","protein_coding" "Seita.5G464700.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.6G000900.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.6G005200.1","No alias","Setaria italica ","storage vacuole protein sorting receptor *(RMR)","protein_coding" "Seita.6G010900.1","No alias","Setaria italica ","phospholipase-A1 *(PA-PLA1) & phospholipase *(SGR2)","protein_coding" "Seita.6G059100.1","No alias","Setaria italica ","DNA topoisomerase *(TOP1)","protein_coding" "Seita.6G121500.1","No alias","Setaria italica ","GARP subgroup PHL transcription factor","protein_coding" "Seita.6G173200.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.6G176300.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.6G218100.1","No alias","Setaria italica ","deneddylase *(DEN1)","protein_coding" "Seita.6G239700.1","No alias","Setaria italica ","MYB class-R2R3 subgroup-4 transcription factor","protein_coding" "Seita.6G246000.1","No alias","Setaria italica ","phosphatidylinositol 3-phosphate phosphatase *(MTM)","protein_coding" "Seita.7G006700.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.7G032800.1","No alias","Setaria italica ","RING-H2-class CTL-subclass E3 ubiquitin ligase","protein_coding" "Seita.7G086400.1","No alias","Setaria italica ","chaperone component *(ClpD) of chloroplast Clp-type protease complex","protein_coding" "Seita.7G146600.1","No alias","Setaria italica ","CDKG protein kinase & catalytic component *(CDKG) of cyclin-dependent kinase complex & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Seita.7G148600.1","No alias","Setaria italica ","inositol transporter *(INT)","protein_coding" "Seita.7G157400.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.7G179500.1","No alias","Setaria italica ","LIM-type transcription factor","protein_coding" "Seita.7G293300.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.7G328400.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.7G334300.1","No alias","Setaria italica ","phototropin photoreceptor & AGC-VIII protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Seita.8G053600.1","No alias","Setaria italica ","transcriptional co-activator *(BET/GTE)","protein_coding" "Seita.8G125300.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.8G166600.1","No alias","Setaria italica ","substrate adaptor of CUL3-BTB E3 ubiquitin ligase *(ETO)","protein_coding" "Seita.8G167300.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.8G167600.1","No alias","Setaria italica ","clade J phosphatase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Seita.8G219600.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G018600.1","No alias","Setaria italica ","RLCK-VI receptor-like protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Seita.9G038500.1","No alias","Setaria italica ","E3 ubiquitin ligase","protein_coding" "Seita.9G163300.1","No alias","Setaria italica ","modification writer component *(BMI1) of modification writer protein components","protein_coding" "Seita.9G298900.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G381400.1","No alias","Setaria italica ","EC_3.4 hydrolase acting on peptide bond (peptidase)","protein_coding" "Seita.9G401900.1","No alias","Setaria italica ","stabilizing factor of microtubule orientation *(SAB/KIP)","protein_coding" "Seita.9G451600.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G485400.1","No alias","Setaria italica ","phosphatidylinositol 3,5-bisphosphate biosynthesis scaffold protein *(VAC14)","protein_coding" "Seita.9G534000.1","No alias","Setaria italica ","methylation reader *(ECT)","protein_coding" "Seita.9G571500.1","No alias","Setaria italica ","de novo DNA methylase *(DRM) & EC_2.1 transferase transferring one-carbon group","protein_coding" "Seita.9G579500.1","No alias","Setaria italica ","deubiquitinase","protein_coding" "Sobic.001G039600.1","No alias","Sorghum bicolor ","E3 ubiquitin ligase","protein_coding" "Sobic.001G056200.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G090400.1","No alias","Sorghum bicolor ","methylation reader component *(ING1)","protein_coding" "Sobic.001G102700.1","No alias","Sorghum bicolor ","M8-class (Leishmanolysin) metalloprotease","protein_coding" "Sobic.001G118000.1","No alias","Sorghum bicolor ","catalytic component *(PI4K-alpha) of phosphatidylinositol 4-kinase complex & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.001G154900.1","No alias","Sorghum bicolor ","phosphatase *(PPKL) & brassinosteroid signalling protein phosphatase *(BSU/BSL) & regulatory protein phosphatase *(BSL) & EC_3.1 hydrolase acting on ester bond","protein_coding" "Sobic.001G177300.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G270400.4","No alias","Sorghum bicolor ","monoacylglycerol lipase","protein_coding" "Sobic.001G296500.1","No alias","Sorghum bicolor ","substrate adaptor *(-DILLO) of SCF E3 ubiquitin ligase complex","protein_coding" "Sobic.001G366800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G389800.1","No alias","Sorghum bicolor ","bifunctional alpha-L-arabinofuranosidase and beta-D-xylosidase *(ASD)","protein_coding" "Sobic.001G393401.1","No alias","Sorghum bicolor ","protein involved in PS-II assembly *(HCF243/PAP90)","protein_coding" "Sobic.001G424500.1","No alias","Sorghum bicolor ","GDP-D-mannose pyrophosphorylase *(VTC1) & GDP-D-mannose pyrophosphorylase *(VTC1) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.001G436900.1","No alias","Sorghum bicolor ","component *(ATG9) of autophagosome ATG9-2-18 membrane shuttling complex","protein_coding" "Sobic.001G478800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G482900.1","No alias","Sorghum bicolor ","EC_2.4 glycosyltransferase & beta-1,4-mannosyl-transferase *(ALG1)","protein_coding" "Sobic.001G497300.1","No alias","Sorghum bicolor ","MAP3K-RAF protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.001G511500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G544200.1","No alias","Sorghum bicolor ","component *(XPF) of DNA repair endonuclease complex","protein_coding" "Sobic.002G006900.1","No alias","Sorghum bicolor ","regulatory protein *(SRFR) of TNL-mediated effector-triggered immunity","protein_coding" "Sobic.002G009500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G048700.1","No alias","Sorghum bicolor ","small solute transporter *(BT1)","protein_coding" "Sobic.002G049200.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G054600.3","No alias","Sorghum bicolor ","bHLH-type transcription factor","protein_coding" "Sobic.002G058400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G127550.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G133400.4","No alias","Sorghum bicolor ","regulatory kinase *(CTR1) of EIN2 signal transducer activity & MAP3K-RAF protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.002G177400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G252800.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G262700.1","No alias","Sorghum bicolor ","component *(U11-35K) of U11 snRNP complex","protein_coding" "Sobic.002G302700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G313300.1","No alias","Sorghum bicolor ","transcriptional co-activator *(BET/GTE)","protein_coding" "Sobic.002G313500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G314900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G409700.2","No alias","Sorghum bicolor ","catalytic component *(REV3) of DNA polymerase zeta complex","protein_coding" "Sobic.002G430300.1","No alias","Sorghum bicolor ","component *(Symplekin/Pta1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex","protein_coding" "Sobic.003G007500.3","No alias","Sorghum bicolor ","CKL protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.003G072200.1","No alias","Sorghum bicolor ","type-I-residues E3 ubiquitin ligase *(PRT6)","protein_coding" "Sobic.003G119000.1","No alias","Sorghum bicolor ","exoribonuclease *(RAT1/XRN2)","protein_coding" "Sobic.003G120700.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.003G145900.1","No alias","Sorghum bicolor ","lyso-phosphatidylethanolamine acyltransferase *(LPEAT)","protein_coding" "Sobic.003G167000.1","No alias","Sorghum bicolor ","clade H phosphatase","protein_coding" "Sobic.003G307000.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.004G174400.1","No alias","Sorghum bicolor ","multifunctional component *(TFC2/YY1) of TFIIIc transcription factor complex","protein_coding" "Sobic.004G188300.2","No alias","Sorghum bicolor ","C2H2-type subclass STOP transcription factor","protein_coding" "Sobic.004G246100.2","No alias","Sorghum bicolor ","component *(NCT) of gamma secretase complex","protein_coding" "Sobic.004G257400.1","No alias","Sorghum bicolor ","substrate adaptor of CUL4-based E3 ubiquitin ligase complex","protein_coding" "Sobic.004G289500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.004G291900.1","No alias","Sorghum bicolor ","component *(Symplekin/Pta1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex","protein_coding" "Sobic.005G026200.1","No alias","Sorghum bicolor ","proteasome assembly quality control factor *(ECM29)","protein_coding" "Sobic.005G104500.1","No alias","Sorghum bicolor ","phosphatidylinositol 4-kinase *(PI4K-beta) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.005G113766.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.005G118600.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.005G132400.1","No alias","Sorghum bicolor ","EC_3.2 glycosylase","protein_coding" "Sobic.005G196900.3","No alias","Sorghum bicolor ","transcriptional co-regulator *(Oberon)","protein_coding" "Sobic.006G008900.1","No alias","Sorghum bicolor ","CrlRLK1 protein kinase & RALF-peptide receptor *(CrRLK1L) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.006G037700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.006G041600.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.006G049100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.006G105400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.006G209850.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.006G223200.1","No alias","Sorghum bicolor ","large subunit zeta of AP-5 cargo adaptor complex","protein_coding" "Sobic.006G248400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.007G043500.2","No alias","Sorghum bicolor ","DNA topoisomerase *(TOP1)","protein_coding" "Sobic.007G061700.1","No alias","Sorghum bicolor ","component *(VPS18) of HOPS/CORVET membrane tethering complexes","protein_coding" "Sobic.007G103600.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.007G191100.1","No alias","Sorghum bicolor ","protein S-acyltransferase *(PAT1-9)","protein_coding" "Sobic.008G092800.1","No alias","Sorghum bicolor ","EC_3.6 hydrolase acting on acid anhydride & ATPase component *(FIGL1) of FIGL1-FLIP meiotic crossover regulator complex","protein_coding" "Sobic.008G106000.1","No alias","Sorghum bicolor ","Met-tRNA positioning component *(eIF5B) of initiator tRNA carrier complex","protein_coding" "Sobic.008G127400.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.008G133300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.008G192900.2","No alias","Sorghum bicolor ","proton","protein_coding" "Sobic.009G037000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.009G119000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.010G002100.1","No alias","Sorghum bicolor ","component *(MED13) of kinase module of MEDIATOR transcription co-activator complex","protein_coding" "Sobic.010G026400.1","No alias","Sorghum bicolor ","component *(Bud13) of non-snRNP MOS4-associated complex","protein_coding" "Sobic.010G069100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.010G141500.4","No alias","Sorghum bicolor ","protease *(OTS)","protein_coding" "Sobic.010G148932.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.010G202600.1","No alias","Sorghum bicolor ","E3 ubiquitin ligase component *(Doa10) of ER-associated protein degradation (ERAD) machinery","protein_coding" "Sobic.010G245100.1","No alias","Sorghum bicolor ","L-lectin protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.010G279900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Solyc01g006970","No alias","Solanum lycopersicum","RNA helicase family protein (AHRD V3.3 *** AT2G35920.2)","protein_coding" "Solyc01g091360","No alias","Solanum lycopersicum","DUF1499 family protein (AHRD V3.3 *** AT3G60810.1)","protein_coding" "Solyc01g105060","No alias","Solanum lycopersicum","Beta-hydroxyacyl-ACP dehydratase (AHRD V3.3 *** F2VYC9_HELAN)","protein_coding" "Solyc01g110960","No alias","Solanum lycopersicum","Prefoldin chaperone subunit family protein, putative (AHRD V3.3 *** A0A061F1S1_THECC)","protein_coding" "Solyc01g111720","No alias","Solanum lycopersicum","Translation initiation factor if-3, putative (AHRD V3.3 *** B9RJ84_RICCO)","protein_coding" "Solyc02g030250","No alias","Solanum lycopersicum","Coatomer epsilon subunit (AHRD V3.3 *** AT1G30630.1)","protein_coding" "Solyc02g071570","No alias","Solanum lycopersicum","Pentatricopeptide repeat superfamily protein (AHRD V3.3 *** A0A061GEM0_THECC)","protein_coding" "Solyc02g077410","No alias","Solanum lycopersicum","28 kDa heat-and acid-stable phosphoprotein (AHRD V3.3 *** A0A151SAQ2_CAJCA)","protein_coding" "Solyc02g078820","No alias","Solanum lycopersicum","lysine ketoglutarate reductase trans-splicing-like protein (DUF707) (AHRD V3.3 *** AT1G61240.6)","protein_coding" "Solyc02g080470","No alias","Solanum lycopersicum","Heat shock protein 70 family protein (AHRD V3.3 *** A0A061F4U1_THECC)","protein_coding" "Solyc02g082110","No alias","Solanum lycopersicum","Zinc finger transcription factor 18","protein_coding" "Solyc02g082250","No alias","Solanum lycopersicum","Thioredoxin reductase (AHRD V3.3 *** K4BA95_SOLLC)","protein_coding" "Solyc02g086220","No alias","Solanum lycopersicum","alpha/beta-Hydrolases superfamily protein (AHRD V3.3 *** AT5G38220.3)","protein_coding" "Solyc03g025420","No alias","Solanum lycopersicum","SKP1 family protein (AHRD V3.3 *** B9I474_POPTR)","protein_coding" "Solyc03g045050","No alias","Solanum lycopersicum","Nuclear matrix constituent-like protein 1 (AHRD V3.3 *** E5GCT1_CUCME)","protein_coding" "Solyc03g059100","No alias","Solanum lycopersicum","Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** AT2G43770.1)","protein_coding" "Solyc03g078380","No alias","Solanum lycopersicum","Glutaredoxin family protein (AHRD V3.3 *** AT5G13810.1)","protein_coding" "Solyc03g111770","No alias","Solanum lycopersicum","Alpha/beta-Hydrolases superfamily protein (AHRD V3.3 *** A0A061ED84_THECC)","protein_coding" "Solyc03g115410","No alias","Solanum lycopersicum","Leucine-rich repeat (LRR) family protein (AHRD V3.3 *** AT5G07910.1)","protein_coding" "Solyc03g122310","No alias","Solanum lycopersicum","Aldehyde dehydrogenase (AHRD V3.3 *** Q9FPK6_ORYSA)","protein_coding" "Solyc04g010070","No alias","Solanum lycopersicum","calcium-binding EF-hand family protein","protein_coding" "Solyc04g056320","No alias","Solanum lycopersicum","Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 (AHRD V3.3 *** W9QND6_9ROSA)","protein_coding" "Solyc04g080570","No alias","Solanum lycopersicum","Gamma carbonic anhydrase-like protein (AHRD V3.3 *** I3SYK2_MEDTR)","protein_coding" "Solyc04g082610","No alias","Solanum lycopersicum","glutamate receptor like 3.3","protein_coding" "Solyc04g082780","No alias","Solanum lycopersicum","Cinnamoyl-CoA reductase family protein (AHRD V3.3 *** B9GPN4_POPTR)","protein_coding" "Solyc05g005730","No alias","Solanum lycopersicum","RRP15-like protein (AHRD V3.3 *** A0A0B2SG91_GLYSO)","protein_coding" "Solyc05g006320","No alias","Solanum lycopersicum","Sterile alpha motif (SAM) domain-containing protein (AHRD V3.3 *-* AT3G07170.1)","protein_coding" "Solyc05g008370","No alias","Solanum lycopersicum","Ribose-5-phosphate isomerase-like protein (AHRD V3.3 *** T2DNB2_PHAVU)","protein_coding" "Solyc05g053880","No alias","Solanum lycopersicum","Dead box ATP-dependent RNA helicase, putative (AHRD V3.3 --* B9TA05_RICCO)","protein_coding" "Solyc06g005600","No alias","Solanum lycopersicum","Scarecrow-like transcription factor 11, putative isoform 1 (AHRD V3.3 *** A0A061GX35_THECC)","protein_coding" "Solyc06g030470","No alias","Solanum lycopersicum","Domain of Uncharacterized protein function, putative (AHRD V3.3 *** A0A061GWB6_THECC)","protein_coding" "Solyc06g053160","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT4G27680.1)","protein_coding" "Solyc06g053700","No alias","Solanum lycopersicum","ATBET12, putative (AHRD V3.3 *** B9STJ3_RICCO)","protein_coding" "Solyc06g065570","No alias","Solanum lycopersicum","acyl-CoA N-acyltransferases (NAT) superfamily protein","protein_coding" "Solyc06g067970","No alias","Solanum lycopersicum","DUF1644 family protein (AHRD V3.3 *** G7LIM9_MEDTR)","protein_coding" "Solyc06g073600","No alias","Solanum lycopersicum","Ubiquitin-associated/translation elongation factor EF1B protein (AHRD V3.3 *** A0A061GSV5_THECC)","protein_coding" "Solyc07g005690","No alias","Solanum lycopersicum","Ribosomal RNA small subunit methyltransferase G (AHRD V3.3 *** A0A0B0NU00_GOSAR)","protein_coding" "Solyc07g007350","No alias","Solanum lycopersicum","LOW QUALITY:sterile alpha motif (SAM) domain protein (AHRD V3.3 *** AT2G12462.1)","protein_coding" "Solyc07g007860","No alias","Solanum lycopersicum","Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (AHRD V3.3 *-* AT2G10940.2)","protein_coding" "Solyc07g008720","No alias","Solanum lycopersicum","BTF3-like transcription factor","protein_coding" "Solyc07g044840","No alias","Solanum lycopersicum","2,3-bisphosphoglycerate-independent phosphoglycerate mutase (AHRD V3.3 *** PMGI_TOBAC)","protein_coding" "Solyc07g049720","No alias","Solanum lycopersicum","10kDa polypeptide precursor of photosystem 2","protein_coding" "Solyc07g053610","No alias","Solanum lycopersicum","Homeodomain-like transcriptional regulator (AHRD V3.3 *** AT5G44180.3)","protein_coding" "Solyc07g056520","No alias","Solanum lycopersicum","Ubiquitin carboxyl-terminal hydrolase (AHRD V3.3 *** A0A072V9D1_MEDTR)","protein_coding" "Solyc08g059760","No alias","Solanum lycopersicum","Peroxidase (AHRD V3.3 *** A0A0V0I4D2_SOLCH)","protein_coding" "Solyc09g010640","No alias","Solanum lycopersicum","LOW QUALITY:HSP20-like chaperones superfamily protein (AHRD V3.3 *** AT2G37570.1)","protein_coding" "Solyc09g018840","No alias","Solanum lycopersicum","MLO-like protein (AHRD V3.3 *** M1BT43_SOLTU)","protein_coding" "Solyc09g055760","No alias","Solanum lycopersicum","myosin heavy chain-like protein (AHRD V3.3 *** AT5G59210.2)","protein_coding" "Solyc09g063070","No alias","Solanum lycopersicum","Tetraspanin family protein, putative (AHRD V3.3 *** A0A061DNH5_THECC)","protein_coding" "Solyc09g098360","No alias","Solanum lycopersicum","RNA polymerase II transcription mediator (AHRD V3.3 --* AT1G55325.4)","protein_coding" "Solyc10g078180","No alias","Solanum lycopersicum","cyclinT1_1","protein_coding" "Solyc10g079500","No alias","Solanum lycopersicum","Inosine-5'-monophosphate dehydrogenase (AHRD V3.3 *** K4D2J1_SOLLC)","protein_coding" "Solyc10g081380","No alias","Solanum lycopersicum","DnaJ/Hsp40 cysteine-rich domain protein, putative (AHRD V3.3 *** G7L1K2_MEDTR)","protein_coding" "Solyc11g006390","No alias","Solanum lycopersicum","Nuclear pore complex protein Nup136b (AHRD V3.3 *** W6JLY3_NICBE)","protein_coding" "Solyc11g010200","No alias","Solanum lycopersicum","14-3-3 family protein AF079104","protein_coding" "Solyc11g012280","No alias","Solanum lycopersicum","Sulfate adenylyltransferase subunit 2 (AHRD V3.3 *** A0A061GG86_THECC)","protein_coding" "Solyc11g017430","No alias","Solanum lycopersicum","Mitochondrial transcription termination factor family protein (AHRD V3.3 *** AT4G09620.3)","protein_coding" "Solyc11g040260","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9STG7_RICCO)","protein_coding" "Solyc11g040370","No alias","Solanum lycopersicum","Far upstream element-binding protein 2 (AHRD V3.3 *** A0A0B2RS73_GLYSO)","protein_coding" "Solyc11g069300","No alias","Solanum lycopersicum","Kinase family protein (AHRD V3.3 *-* B9HQA2_POPTR)","protein_coding" "Solyc11g071910","No alias","Solanum lycopersicum","GTP-binding family protein (AHRD V3.3 *** D7KI21_ARALL)","protein_coding" "Solyc12g005220","No alias","Solanum lycopersicum","Ypt/Rab-GAP domain of gyp1p superfamily protein (AHRD V3.3 *** AT5G54780.1)","protein_coding" "Solyc12g017420","No alias","Solanum lycopersicum","ABC transporter family protein (AHRD V3.3 *** AT1G54350.1)","protein_coding" "Solyc12g095800","No alias","Solanum lycopersicum","DnaJ protein family-like (AHRD V3.3 *** Q7F1J8_ORYSJ)","protein_coding" "Sopen07g025320","No alias","Solanum pennellii","Eukaryotic DNA topoisomerase I, DNA binding fragment","protein_coding"