"sequence_id","alias","species","description","type"
"102471","No alias","Selaginella moellendorffii ","Nascent polypeptide-associated complex (NAC), alpha subunit family protein","protein_coding"
"103994","No alias","Selaginella moellendorffii ","Ribosomal protein L30/L7 family protein","protein_coding"
"108195","No alias","Selaginella moellendorffii ","FUS3-complementing gene 1","protein_coding"
"116553","No alias","Selaginella moellendorffii ","Nucleoside diphosphate kinase family protein","protein_coding"
"121195","No alias","Selaginella moellendorffii ","Pseudouridine synthase family protein","protein_coding"
"121308","No alias","Selaginella moellendorffii ","Glutamyl/glutaminyl-tRNA synthetase, class Ic","protein_coding"
"123748","No alias","Selaginella moellendorffii ","DNA topoisomerase, type IA, core","protein_coding"
"125145","No alias","Selaginella moellendorffii ","Auxin-responsive GH3 family protein","protein_coding"
"126257","No alias","Selaginella moellendorffii ","Plant protein of unknown function (DUF868)","protein_coding"
"126946","No alias","Selaginella moellendorffii ","PETER PAN-like protein","protein_coding"
"127582","No alias","Selaginella moellendorffii ","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"144099","No alias","Selaginella moellendorffii ","Noc2p family","protein_coding"
"144921","No alias","Selaginella moellendorffii ","ribosomal protein L5","protein_coding"
"146841","No alias","Selaginella moellendorffii ","NOP56-like pre RNA processing ribonucleoprotein","protein_coding"
"148446","No alias","Selaginella moellendorffii ","Ribosomal protein S7e family protein","protein_coding"
"154058","No alias","Selaginella moellendorffii ","6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase","protein_coding"
"164298","No alias","Selaginella moellendorffii ","Ribosomal L28e protein family","protein_coding"
"166650","No alias","Selaginella moellendorffii ","Ribosomal protein L13 family protein","protein_coding"
"171149","No alias","Selaginella moellendorffii ","exocyst subunit exo70 family protein D1","protein_coding"
"173778","No alias","Selaginella moellendorffii ","RNA cyclase family protein","protein_coding"
"18420","No alias","Selaginella moellendorffii ","Ran BP2/NZF zinc finger-like superfamily protein","protein_coding"
"230251","No alias","Selaginella moellendorffii ","Small GTP-binding protein","protein_coding"
"230302","No alias","Selaginella moellendorffii ","Ribosomal protein L1p/L10e family","protein_coding"
"231460","No alias","Selaginella moellendorffii ","Ribosomal protein S5/Elongation factor G/III/V family protein","protein_coding"
"233646","No alias","Selaginella moellendorffii ","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"234054","No alias","Selaginella moellendorffii ","electron transport SCO1/SenC family protein","protein_coding"
"266974","No alias","Selaginella moellendorffii ","H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein","protein_coding"
"267976","No alias","Selaginella moellendorffii ","ribosomal protein L18","protein_coding"
"26835","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"270545","No alias","Selaginella moellendorffii ","Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein","protein_coding"
"270686","No alias","Selaginella moellendorffii ","Ribosomal protein L6 family protein","protein_coding"
"402120","No alias","Selaginella moellendorffii ","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"402172","No alias","Selaginella moellendorffii ","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"402334","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"402481","No alias","Selaginella moellendorffii ","EMBRYO DEFECTIVE 140","protein_coding"
"402971","No alias","Selaginella moellendorffii ","SET domain-containing protein","protein_coding"
"403029","No alias","Selaginella moellendorffii ","cytochrome P450, family 716, subfamily A, polypeptide 1","protein_coding"
"405317","No alias","Selaginella moellendorffii ","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"405662","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"405767","No alias","Selaginella moellendorffii ","FTSH protease 12","protein_coding"
"405981","No alias","Selaginella moellendorffii ","CCAAT-binding factor","protein_coding"
"409069","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"409077","No alias","Selaginella moellendorffii ","purin 7","protein_coding"
"411103","No alias","Selaginella moellendorffii ","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"413623","No alias","Selaginella moellendorffii ","appr-1-p processing enzyme family protein","protein_coding"
"413828","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"415389","No alias","Selaginella moellendorffii ","LETM1-like protein","protein_coding"
"416212","No alias","Selaginella moellendorffii ","S-domain-2 5","protein_coding"
"418494","No alias","Selaginella moellendorffii ","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"418528","No alias","Selaginella moellendorffii ","GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative","protein_coding"
"420460","No alias","Selaginella moellendorffii ","NAD(P)-binding Rossmann-fold superfamily protein","protein_coding"
"420654","No alias","Selaginella moellendorffii ","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"420704","No alias","Selaginella moellendorffii ","PENTATRICOPEPTIDE REPEAT 596","protein_coding"
"420955","No alias","Selaginella moellendorffii ","Protein kinase protein with adenine nucleotide alpha hydrolases-like domain","protein_coding"
"423018","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"427179","No alias","Selaginella moellendorffii ","Leucine-rich receptor-like protein kinase family protein","protein_coding"
"427361","No alias","Selaginella moellendorffii ","DNA topoisomerase, type IA, core","protein_coding"
"429131","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"437511","No alias","Selaginella moellendorffii ","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding"
"438142","No alias","Selaginella moellendorffii ","glutathione reductase","protein_coding"
"438805","No alias","Selaginella moellendorffii ","Nucleic acid-binding, OB-fold-like protein","protein_coding"
"439638","No alias","Selaginella moellendorffii ","RING/FYVE/PHD zinc finger superfamily protein","protein_coding"
"439683","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"440805","No alias","Selaginella moellendorffii ","ribosomal protein S13A","protein_coding"
"444770","No alias","Selaginella moellendorffii ","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"447199","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"448827","No alias","Selaginella moellendorffii ","Insulinase (Peptidase family M16) protein","protein_coding"
"66767","No alias","Selaginella moellendorffii ","ribosome biogenesis regulatory protein (RRS1) family protein","protein_coding"
"71388","No alias","Selaginella moellendorffii ","Ribosomal protein L18e/L15 superfamily protein","protein_coding"
"73963","No alias","Selaginella moellendorffii ","Polynucleotidyl transferase, ribonuclease H-like superfamily protein","protein_coding"
"75526","No alias","Selaginella moellendorffii ","Galactose oxidase/kelch repeat superfamily protein","protein_coding"
"75793","No alias","Selaginella moellendorffii ","DNA-directed RNA polymerase II","protein_coding"
"77254","No alias","Selaginella moellendorffii ","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"77953","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"79381","No alias","Selaginella moellendorffii ","Sec1/munc18-like (SM) proteins superfamily","protein_coding"
"81392","No alias","Selaginella moellendorffii ","glycine-rich RNA-binding protein 3","protein_coding"
"88274","No alias","Selaginella moellendorffii ","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"89815","No alias","Selaginella moellendorffii ","Nitrogen regulatory PII-like, alpha/beta","protein_coding"
"93014","No alias","Selaginella moellendorffii ","GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative","protein_coding"
"96496","No alias","Selaginella moellendorffii ","Molecular chaperone Hsp40/DnaJ family protein","protein_coding"
"98248","No alias","Selaginella moellendorffii ","appr-1-p processing enzyme family protein","protein_coding"
"98323","No alias","Selaginella moellendorffii ","Protein prenylyltransferase superfamily protein","protein_coding"
"A4A49_39238","No alias","Nicotiana attenuata","hypothetical protein","protein_coding"
"At1g04020","No alias","Arabidopsis thaliana","Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]","protein_coding"
"At1g07370","No alias","Arabidopsis thaliana","Proliferating cellular nuclear antigen 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M7Q7]","protein_coding"
"At1g08130","No alias","Arabidopsis thaliana","DNA ligase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42572]","protein_coding"
"At1g10490","No alias","Arabidopsis thaliana","RNA cytidine acetyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIK4]","protein_coding"
"At1g18800","No alias","Arabidopsis thaliana","NRP2 [Source:UniProtKB/TrEMBL;Acc:A0A178W8U0]","protein_coding"
"At1g36390","No alias","Arabidopsis thaliana","GrpE protein homolog [Source:UniProtKB/TrEMBL;Acc:Q9C8X4]","protein_coding"
"At1g43670","No alias","Arabidopsis thaliana","Fructose-1,6-bisphosphatase, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9MA79]","protein_coding"
"At1g48460","No alias","Arabidopsis thaliana","At1g48460 [Source:UniProtKB/TrEMBL;Acc:Q5PNY9]","protein_coding"
"At1g48830","No alias","Arabidopsis thaliana","40S ribosomal protein S7 [Source:UniProtKB/TrEMBL;Acc:A0A178WGF0]","protein_coding"
"At1g48920","No alias","Arabidopsis thaliana","Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]","protein_coding"
"At1g52930","No alias","Arabidopsis thaliana","Ribosome biogenesis protein BRX1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C928]","protein_coding"
"At1g54690","No alias","Arabidopsis thaliana","Probable histone H2AXb [Source:UniProtKB/Swiss-Prot;Acc:Q9S9K7]","protein_coding"
"At1g56050","No alias","Arabidopsis thaliana","Obg-like ATPase 1 [Source:UniProtKB/TrEMBL;Acc:F4I3J0]","protein_coding"
"At1g57820","No alias","Arabidopsis thaliana","E3 ubiquitin-protein ligase ORTHRUS 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYZ0]","protein_coding"
"At1g63660","No alias","Arabidopsis thaliana","At1g63660 [Source:UniProtKB/TrEMBL;Acc:Q9CAD1]","protein_coding"
"At1g63810","No alias","Arabidopsis thaliana","Nucleolar protein [Source:UniProtKB/TrEMBL;Acc:Q0WVM5]","protein_coding"
"At1g64190","No alias","Arabidopsis thaliana","6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SH69]","protein_coding"
"At1g64390","No alias","Arabidopsis thaliana","Endoglucanase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q42059]","protein_coding"
"At1g64600","No alias","Arabidopsis thaliana","At1g64600 [Source:UniProtKB/TrEMBL;Acc:Q8GW63]","protein_coding"
"At1g67120","No alias","Arabidopsis thaliana","ATPases;nucleotide binding;ATP binding;nucleoside-triphosphatases;transcription factor binding [Source:TAIR;Acc:AT1G67120]","protein_coding"
"At1g67320","No alias","Arabidopsis thaliana","DNA primase large subunit [Source:UniProtKB/TrEMBL;Acc:F4HRU9]","protein_coding"
"At1g69200","No alias","Arabidopsis thaliana","Fructokinase-like 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4I0K2]","protein_coding"
"At1g69830","No alias","Arabidopsis thaliana","Alpha-amylase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94A41]","protein_coding"
"At1g71260","No alias","Arabidopsis thaliana","Single-stranded DNA-binding protein WHY2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VYF7]","protein_coding"
"At1g72040","No alias","Arabidopsis thaliana","At1g72040 [Source:UniProtKB/TrEMBL;Acc:Q501D4]","protein_coding"
"At1g80270","No alias","Arabidopsis thaliana","PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6]","protein_coding"
"At2g01250","No alias","Arabidopsis thaliana","60S ribosomal protein L7-2 [Source:UniProtKB/Swiss-Prot;Acc:P60040]","protein_coding"
"At2g15690","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At2g15690, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQE5]","protein_coding"
"At2g17630","No alias","Arabidopsis thaliana","Phosphoserine aminotransferase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SHP0]","protein_coding"
"At2g18330","No alias","Arabidopsis thaliana","AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPW5]","protein_coding"
"At2g19540","No alias","Arabidopsis thaliana","Putative WD-40 repeat protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUN8]","protein_coding"
"At2g19670","No alias","Arabidopsis thaliana","Probable protein arginine N-methyltransferase 1.2 [Source:UniProtKB/Swiss-Prot;Acc:O82210]","protein_coding"
"At2g19860","No alias","Arabidopsis thaliana","Phosphotransferase [Source:UniProtKB/TrEMBL;Acc:A0A178VX81]","protein_coding"
"At2g21790","No alias","Arabidopsis thaliana","Ribonucleoside-diphosphate reductase large subunit [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ20]","protein_coding"
"At2g24490","No alias","Arabidopsis thaliana","RPA32A [Source:UniProtKB/TrEMBL;Acc:A0A178VTA7]","protein_coding"
"At2g25355","No alias","Arabidopsis thaliana","At2g25350/F13B15.1 [Source:UniProtKB/TrEMBL;Acc:Q94AW9]","protein_coding"
"At2g31060","No alias","Arabidopsis thaliana","Elongation factor family protein [Source:UniProtKB/TrEMBL;Acc:F4IPW5]","protein_coding"
"At2g34260","No alias","Arabidopsis thaliana","WD repeat-containing protein 55 [Source:UniProtKB/Swiss-Prot;Acc:O80775]","protein_coding"
"At2g40550","No alias","Arabidopsis thaliana","Mini-chromosome maintenance complex-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q501D5]","protein_coding"
"At2g41950","No alias","Arabidopsis thaliana","At2g41950/T6D20.26 [Source:UniProtKB/TrEMBL;Acc:O23684]","protein_coding"
"At2g45030","No alias","Arabidopsis thaliana","Elongation factor G-2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4IW10]","protein_coding"
"At2g46370","No alias","Arabidopsis thaliana","Auxin-responsive GH3 family protein [Source:UniProtKB/TrEMBL;Acc:F4II77]","protein_coding"
"At2g46870","No alias","Arabidopsis thaliana","B3 domain-containing transcription factor NGA1 [Source:UniProtKB/Swiss-Prot;Acc:O82799]","protein_coding"
"At3g02650","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At3g02650, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C896]","protein_coding"
"At3g03920","No alias","Arabidopsis thaliana","Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZT0]","protein_coding"
"At3g03960","No alias","Arabidopsis thaliana","T-complex protein 1 subunit theta [Source:UniProtKB/Swiss-Prot;Acc:Q94K05]","protein_coding"
"At3g07770","No alias","Arabidopsis thaliana","Heat shock protein 90-6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4JFN3]","protein_coding"
"At3g10530","No alias","Arabidopsis thaliana","F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]","protein_coding"
"At3g13860","No alias","Arabidopsis thaliana","Chaperonin CPN60-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93ZM7]","protein_coding"
"At3g15460","No alias","Arabidopsis thaliana","Ribosome biogenesis protein BRX1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE16]","protein_coding"
"At3g23940","No alias","Arabidopsis thaliana","Dihydroxy-acid dehydratase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR4]","protein_coding"
"At3g23990","No alias","Arabidopsis thaliana","Chaperonin CPN60, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P29197]","protein_coding"
"At3g25230","No alias","Arabidopsis thaliana","Peptidylprolyl isomerase [Source:UniProtKB/TrEMBL;Acc:B3H746]","protein_coding"
"At3g27060","No alias","Arabidopsis thaliana","TSO2 [Source:UniProtKB/TrEMBL;Acc:A0A178VJE9]","protein_coding"
"At3g27570","No alias","Arabidopsis thaliana","Sucrase/ferredoxin-like family protein [Source:UniProtKB/TrEMBL;Acc:F4IWK4]","protein_coding"
"At3g44750","No alias","Arabidopsis thaliana","Histone deacetylase HDT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVE6]","protein_coding"
"At3g47370","No alias","Arabidopsis thaliana","40S ribosomal protein S20-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9STY6]","protein_coding"
"At3g53020","No alias","Arabidopsis thaliana","60S ribosomal protein L24-2 [Source:UniProtKB/Swiss-Prot;Acc:P38666]","protein_coding"
"At3g55010","No alias","Arabidopsis thaliana","Phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q05728]","protein_coding"
"At3g60880","No alias","Arabidopsis thaliana","4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZX6]","protein_coding"
"At4g00600","No alias","Arabidopsis thaliana","Bifunctional protein FolD 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O65269]","protein_coding"
"At4g02790","No alias","Arabidopsis thaliana","DAR GTPase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F6]","protein_coding"
"At4g09900","No alias","Arabidopsis thaliana","Putative methylesterase 12, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q940H7]","protein_coding"
"At4g15640","No alias","Arabidopsis thaliana","Adenylyl cyclase [Source:UniProtKB/TrEMBL;Acc:Q1JPP0]","protein_coding"
"At4g20020","No alias","Arabidopsis thaliana","Multiple organellar RNA editing factor 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O49429]","protein_coding"
"At4g25340","No alias","Arabidopsis thaliana","Peptidyl-prolyl cis-trans isomerase FKBP53 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZG9]","protein_coding"
"At4g26780","No alias","Arabidopsis thaliana","GrpE protein homolog 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LB47]","protein_coding"
"At4g29040","No alias","Arabidopsis thaliana","RPT2a [Source:UniProtKB/TrEMBL;Acc:A0A178V3V3]","protein_coding"
"At4g30840","No alias","Arabidopsis thaliana","Nuclear pore complex protein NUP43 [Source:UniProtKB/Swiss-Prot;Acc:Q24JJ9]","protein_coding"
"At4g31120","No alias","Arabidopsis thaliana","Protein arginine N-methyltransferase 1.5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GWT4]","protein_coding"
"At4g31210","No alias","Arabidopsis thaliana","DNA topoisomerase, type IA, core [Source:UniProtKB/TrEMBL;Acc:F4JRX3]","protein_coding"
"At4g31700","No alias","Arabidopsis thaliana","40S ribosomal protein S6-1 [Source:UniProtKB/Swiss-Prot;Acc:O48549]","protein_coding"
"At4g31810","No alias","Arabidopsis thaliana","3-hydroxyisobutyryl-CoA hydrolase-like protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8RXN4]","protein_coding"
"At4g37910","No alias","Arabidopsis thaliana","Heat shock 70 kDa protein 9, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GUM2]","protein_coding"
"At4g39280","No alias","Arabidopsis thaliana","Phenylalanine--tRNA ligase alpha subunit, cytoplasmic [Source:UniProtKB/Swiss-Prot;Acc:Q9T034]","protein_coding"
"At4g39980","No alias","Arabidopsis thaliana","Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P29976]","protein_coding"
"At5g03650","No alias","Arabidopsis thaliana","1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZS3]","protein_coding"
"At5g07340","No alias","Arabidopsis thaliana","Calreticulin family protein [Source:UniProtKB/TrEMBL;Acc:F4K6M8]","protein_coding"
"At5g08610","No alias","Arabidopsis thaliana","PDE340 [Source:UniProtKB/TrEMBL;Acc:A0A178UFQ6]","protein_coding"
"At5g09810","No alias","Arabidopsis thaliana","AtACT7 [Source:UniProtKB/TrEMBL;Acc:A0A178UEW4]","protein_coding"
"At5g11240","No alias","Arabidopsis thaliana","At5g11240 [Source:UniProtKB/TrEMBL;Acc:B5X503]","protein_coding"
"At5g18440","No alias","Arabidopsis thaliana","NUFIP [Source:UniProtKB/TrEMBL;Acc:A0A178UB40]","protein_coding"
"At5g18750","No alias","Arabidopsis thaliana","DNAJ heat shock N-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q3E9D9]","protein_coding"
"At5g23300","No alias","Arabidopsis thaliana","Dihydroorotate dehydrogenase (quinone), mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P32746]","protein_coding"
"At5g39840","No alias","Arabidopsis thaliana","DExH-box ATP-dependent RNA helicase DExH18, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4KFV7]","protein_coding"
"At5g44400","No alias","Arabidopsis thaliana","Berberine bridge enzyme-like 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKU8]","protein_coding"
"At5g46580","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS25]","protein_coding"
"At5g46740","No alias","Arabidopsis thaliana","Ubiquitin carboxyl-terminal hydrolase 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIQ1]","protein_coding"
"At5g47210","No alias","Arabidopsis thaliana","RGG repeats nuclear RNA binding protein C [Source:UniProtKB/Swiss-Prot;Acc:Q9LVT8]","protein_coding"
"At5g48880","No alias","Arabidopsis thaliana","PKT2 [Source:UniProtKB/TrEMBL;Acc:A0A178UEC0]","protein_coding"
"At5g54970","No alias","Arabidopsis thaliana","At5g54970 [Source:UniProtKB/TrEMBL;Acc:Q9FFT3]","protein_coding"
"At5g56500","No alias","Arabidopsis thaliana","Chaperonin 60 subunit beta 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:C0Z361]","protein_coding"
"At5g61000","No alias","Arabidopsis thaliana","Replication protein A subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UJ91]","protein_coding"
"At5g67280","No alias","Arabidopsis thaliana","At5g67280/K3G17_4 [Source:UniProtKB/TrEMBL;Acc:Q9FGQ5]","protein_coding"
"Bradi1g01580","No alias","Brachypodium distachyon","GTP binding Elongation factor Tu family protein","protein_coding"
"Bradi1g02290","No alias","Brachypodium distachyon","wall associated kinase 4","protein_coding"
"Bradi1g02621","No alias","Brachypodium distachyon","nuclear RNA polymerase A1","protein_coding"
"Bradi1g02697","No alias","Brachypodium distachyon","5\'-3\' exonuclease family protein","protein_coding"
"Bradi1g04210","No alias","Brachypodium distachyon","DNA GYRASE A","protein_coding"
"Bradi1g04950","No alias","Brachypodium distachyon","Ribosomal protein L30/L7 family protein","protein_coding"
"Bradi1g06220","No alias","Brachypodium distachyon","ribosomal protein L23AB","protein_coding"
"Bradi1g06520","No alias","Brachypodium distachyon","Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein","protein_coding"
"Bradi1g06870","No alias","Brachypodium distachyon","GTP binding Elongation factor Tu family protein","protein_coding"
"Bradi1g08810","No alias","Brachypodium distachyon","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"Bradi1g09970","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi1g13630","No alias","Brachypodium distachyon","ribosomal protein L5 B","protein_coding"
"Bradi1g14220","No alias","Brachypodium distachyon","Primosome PriB/single-strand DNA-binding","protein_coding"
"Bradi1g17340","No alias","Brachypodium distachyon","histidinol dehydrogenase","protein_coding"
"Bradi1g20880","No alias","Brachypodium distachyon","40s ribosomal protein SA B","protein_coding"
"Bradi1g21440","No alias","Brachypodium distachyon","Pyridoxal phosphate (PLP)-dependent transferases superfamily protein","protein_coding"
"Bradi1g21550","No alias","Brachypodium distachyon","Translation elongation  factor EF1B/ribosomal protein S6 family protein","protein_coding"
"Bradi1g22060","No alias","Brachypodium distachyon","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Bradi1g31066","No alias","Brachypodium distachyon","DNA/RNA polymerases superfamily protein","protein_coding"
"Bradi1g32410","No alias","Brachypodium distachyon","toprim domain-containing protein","protein_coding"
"Bradi1g37490","No alias","Brachypodium distachyon","Translation elongation factor EF1B, gamma chain","protein_coding"
"Bradi1g38227","No alias","Brachypodium distachyon","RNA binding;RNA binding","protein_coding"
"Bradi1g41970","No alias","Brachypodium distachyon","Alpha amylase family protein","protein_coding"
"Bradi1g49760","No alias","Brachypodium distachyon","T-complex protein 1 alpha subunit","protein_coding"
"Bradi1g50860","No alias","Brachypodium distachyon","nucleosome assembly protein 1;2","protein_coding"
"Bradi1g51357","No alias","Brachypodium distachyon","Ribosomal protein S8e family protein","protein_coding"
"Bradi1g54480","No alias","Brachypodium distachyon","mitochondrial 28S ribosomal protein S29-related","protein_coding"
"Bradi1g60310","No alias","Brachypodium distachyon","40s ribosomal protein SA B","protein_coding"
"Bradi1g65150","No alias","Brachypodium distachyon","Ribosomal protein S7e family protein","protein_coding"
"Bradi1g71200","No alias","Brachypodium distachyon","Ribosomal protein S3Ae","protein_coding"
"Bradi1g72750","No alias","Brachypodium distachyon","tubulin-tyrosine ligases;tubulin-tyrosine ligases","protein_coding"
"Bradi2g08840","No alias","Brachypodium distachyon","ribosomal protein L3 plastid","protein_coding"
"Bradi2g09860","No alias","Brachypodium distachyon","LA RNA-binding protein","protein_coding"
"Bradi2g10850","No alias","Brachypodium distachyon","PENTATRICOPEPTIDE REPEAT 596","protein_coding"
"Bradi2g14120","No alias","Brachypodium distachyon","histone deacetylase 2B","protein_coding"
"Bradi2g15700","No alias","Brachypodium distachyon","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Bradi2g18150","No alias","Brachypodium distachyon","Ribosomal L28e protein family","protein_coding"
"Bradi2g21770","No alias","Brachypodium distachyon","Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein","protein_coding"
"Bradi2g23110","No alias","Brachypodium distachyon","ribosomal protein S15A","protein_coding"
"Bradi2g35620","No alias","Brachypodium distachyon","Ribosomal protein S4 (RPS4A) family protein","protein_coding"
"Bradi2g37870","No alias","Brachypodium distachyon","ubiquitin-protein ligase 4","protein_coding"
"Bradi2g38440","No alias","Brachypodium distachyon","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Bradi2g43710","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi2g46010","No alias","Brachypodium distachyon","Ribosomal protein L18ae/LX family protein","protein_coding"
"Bradi2g46580","No alias","Brachypodium distachyon","Zinc-binding ribosomal protein family protein","protein_coding"
"Bradi2g47760","No alias","Brachypodium distachyon","Ribosomal L28e protein family","protein_coding"
"Bradi2g50050","No alias","Brachypodium distachyon","elongation factor family protein","protein_coding"
"Bradi2g53210","No alias","Brachypodium distachyon","zinc finger (Ran-binding) family protein","protein_coding"
"Bradi2g54210","No alias","Brachypodium distachyon","Ribosomal protein S12/S23 family protein","protein_coding"
"Bradi2g54450","No alias","Brachypodium distachyon","ribosomal protein S15A","protein_coding"
"Bradi2g55600","No alias","Brachypodium distachyon","Ribosomal protein L1p/L10e family","protein_coding"
"Bradi2g57887","No alias","Brachypodium distachyon","Nucleic acid-binding, OB-fold-like protein","protein_coding"
"Bradi2g58250","No alias","Brachypodium distachyon","histone deacetylase 3","protein_coding"
"Bradi2g59260","No alias","Brachypodium distachyon","Sas10/Utp3/C1D family","protein_coding"
"Bradi3g01210","No alias","Brachypodium distachyon","Ribosomal protein S3Ae","protein_coding"
"Bradi3g04790","No alias","Brachypodium distachyon","Ribosomal protein S11 family protein","protein_coding"
"Bradi3g05847","No alias","Brachypodium distachyon","nuclear RNA polymerase C2","protein_coding"
"Bradi3g08900","No alias","Brachypodium distachyon","Ribosomal protein L6 family protein","protein_coding"
"Bradi3g14907","No alias","Brachypodium distachyon","nucleolin like 2","protein_coding"
"Bradi3g17836","No alias","Brachypodium distachyon","AICARFT/IMPCHase bienzyme family protein","protein_coding"
"Bradi3g19960","No alias","Brachypodium distachyon","Threonyl-tRNA synthetase","protein_coding"
"Bradi3g20590","No alias","Brachypodium distachyon","GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative","protein_coding"
"Bradi3g28060","No alias","Brachypodium distachyon","plastid transcriptionally active 3","protein_coding"
"Bradi3g29917","No alias","Brachypodium distachyon","nuclear RNA polymerase A2","protein_coding"
"Bradi3g38897","No alias","Brachypodium distachyon","Chaperone protein htpG family protein","protein_coding"
"Bradi3g38917","No alias","Brachypodium distachyon","ribosomal protein L24","protein_coding"
"Bradi3g40870","No alias","Brachypodium distachyon","Ribosomal protein L32e","protein_coding"
"Bradi3g42800","No alias","Brachypodium distachyon","Ribosomal protein L1p/L10e family","protein_coding"
"Bradi3g43560","No alias","Brachypodium distachyon","Ribosomal protein S8e family protein","protein_coding"
"Bradi3g44341","No alias","Brachypodium distachyon","CLPC homologue 1","protein_coding"
"Bradi3g47410","No alias","Brachypodium distachyon","Ribosomal protein L6 family protein","protein_coding"
"Bradi3g55140","No alias","Brachypodium distachyon","Ribosomal protein L14p/L23e family protein","protein_coding"
"Bradi4g01920","No alias","Brachypodium distachyon","arginosuccinate synthase family","protein_coding"
"Bradi4g03303","No alias","Brachypodium distachyon","Homeodomain-like transcriptional regulator","protein_coding"
"Bradi4g07120","No alias","Brachypodium distachyon","Ribosomal protein S4","protein_coding"
"Bradi4g08667","No alias","Brachypodium distachyon","Ribosomal protein L22p/L17e family protein","protein_coding"
"Bradi4g08880","No alias","Brachypodium distachyon","DNA/RNA polymerases superfamily protein","protein_coding"
"Bradi4g10327","No alias","Brachypodium distachyon","polyubiquitin 10","protein_coding"
"Bradi4g13640","No alias","Brachypodium distachyon","ribosomal protein L5","protein_coding"
"Bradi4g17160","No alias","Brachypodium distachyon","DEAD/DEAH box helicase, putative","protein_coding"
"Bradi4g19975","No alias","Brachypodium distachyon","3\'-5\'-exoribonuclease family protein","protein_coding"
"Bradi4g22160","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi4g35490","No alias","Brachypodium distachyon","DEAD box RNA helicase (PRH75)","protein_coding"
"Bradi4g37917","No alias","Brachypodium distachyon","Mitochondrial transcription termination factor family protein","protein_coding"
"Bradi4g38090","No alias","Brachypodium distachyon","TCP-1/cpn60 chaperonin family protein","protein_coding"
"Bradi4g38170","No alias","Brachypodium distachyon","LRR and NB-ARC domains-containing disease resistance protein","protein_coding"
"Bradi4g41050","No alias","Brachypodium distachyon","ribosomal protein 5B","protein_coding"
"Bradi4g41597","No alias","Brachypodium distachyon","gametophytic factor 2","protein_coding"
"Bradi4g41717","No alias","Brachypodium distachyon","Function unknown","protein_coding"
"Bradi5g01890","No alias","Brachypodium distachyon","eukaryotic initiation factor 3 gamma subunit family protein","protein_coding"
"Bradi5g08453","No alias","Brachypodium distachyon","ribosomal protein S27","protein_coding"
"Bradi5g10080","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi5g12347","No alias","Brachypodium distachyon","NAP1-related protein 2","protein_coding"
"Bradi5g20900","No alias","Brachypodium distachyon","Ribosomal protein L30/L7 family protein","protein_coding"
"Bradi5g25300","No alias","Brachypodium distachyon","homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1","protein_coding"
"Brara.A00018.1","No alias","Brassica rapa","tRNA dihydrouridine synthase","protein_coding"
"Brara.A00335.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A00728.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A00883.1","No alias","Brassica rapa","regulatory protein *(RGG) of mRNA quality control","protein_coding"
"Brara.A01535.1","No alias","Brassica rapa","peptidyl-prolyl cis-trans isomerase *(FKBP43/53)","protein_coding"
"Brara.A01555.1","No alias","Brassica rapa","methyltransferase component *(Nop1/fibrillarin) of snoRNP rRNA methylation complex","protein_coding"
"Brara.A01647.1","No alias","Brassica rapa","rRNA methyltransferase *(NOP2)","protein_coding"
"Brara.A01719.1","No alias","Brassica rapa","component *(MTR3/RRP41L) of exosome EXO9 core complex","protein_coding"
"Brara.A02191.1","No alias","Brassica rapa","pre-40S ribosomal subunit assembly factor *(RID3)","protein_coding"
"Brara.A02572.1","No alias","Brassica rapa","component *(mS76) of small mitoribosomal-subunit proteome & component *(mS78/mS79) of small mitoribosomal-subunit proteome","protein_coding"
"Brara.A03225.1","No alias","Brassica rapa","mRNA unwinding factor *(eIF4A))","protein_coding"
"Brara.A03628.1","No alias","Brassica rapa","regulatory GTPase (NUG1/NSN1) of LSU processome","protein_coding"
"Brara.B00272.1","No alias","Brassica rapa","core component *(NHP2) of H/ACA snoRNP RNA pseudouridylation complex","protein_coding"
"Brara.B00789.1","No alias","Brassica rapa","subunit alpha of Cpn60 chaperonin complex & subunit alpha of CPN60 assembly chaperone heterodimer & chaperone *(Hsp60)","protein_coding"
"Brara.B00894.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.B02087.1","No alias","Brassica rapa","subunit beta of NAC ribosome-associated chaperone complex","protein_coding"
"Brara.B02224.1","No alias","Brassica rapa","component *(NRPA7) of RNA polymerase I complex","protein_coding"
"Brara.B02610.1","No alias","Brassica rapa","Hsp90-co-chaperone *(P23)","protein_coding"
"Brara.B03300.1","No alias","Brassica rapa","component *(eIF3i) of eIF3 mRNA-to-PIC binding complex","protein_coding"
"Brara.B03588.1","No alias","Brassica rapa","NSUN-group-V rRNA methyltransferase","protein_coding"
"Brara.C00053.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.C01007.1","No alias","Brassica rapa","HD2-type histone deacetylase *(HD2/HDT)","protein_coding"
"Brara.C02216.1","No alias","Brassica rapa","regulatory protein *(THAL) of rRNA transcription control","protein_coding"
"Brara.C02240.1","No alias","Brassica rapa","hydroxy-tetrahydrodihydrodipicolinate reductase","protein_coding"
"Brara.C02279.1","No alias","Brassica rapa","component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex","protein_coding"
"Brara.C02742.1","No alias","Brassica rapa","SSU processome assembly factor *(UTP21)","protein_coding"
"Brara.C02781.1","No alias","Brassica rapa","translation elongation factor *(EF-Tu)","protein_coding"
"Brara.C03002.1","No alias","Brassica rapa","component *(mS80) of small mitoribosomal-subunit proteome","protein_coding"
"Brara.C03154.1","No alias","Brassica rapa","borate transporter *(BOR)","protein_coding"
"Brara.C03159.1","No alias","Brassica rapa","SSU processome assembly factor *(UTP10)","protein_coding"
"Brara.C03437.1","No alias","Brassica rapa","scaffold component *(Nop56) of snoRNP rRNA methylation complex","protein_coding"
"Brara.C03552.1","No alias","Brassica rapa","RNA editing factor *(MORF)","protein_coding"
"Brara.D00698.1","No alias","Brassica rapa","EC_6.1 ligase forming carbon-oxygen bond & methionine-tRNA ligase","protein_coding"
"Brara.D01037.1","No alias","Brassica rapa","regulatory protein *(Emb506) of embryogenesis","protein_coding"
"Brara.D01131.1","No alias","Brassica rapa","pre-rRNA processing endonuclease involved in ITS1 rRNA removal *(NOB1)","protein_coding"
"Brara.D01229.1","No alias","Brassica rapa","protease *(Deg)","protein_coding"
"Brara.D02203.1","No alias","Brassica rapa","component *(FtsZ2) of plastid division FtsZ prokaryotic-tubulin filaments","protein_coding"
"Brara.D02321.1","No alias","Brassica rapa","component *(ARRS1) of ARPF2-ARRS1 complex","protein_coding"
"Brara.E00127.1","No alias","Brassica rapa","nucleocytoplasmic export karyopherin *(XPO2)","protein_coding"
"Brara.E00914.1","No alias","Brassica rapa","RNA editing factor *(MORF)","protein_coding"
"Brara.E00960.1","No alias","Brassica rapa","cofactor of plastid-encoded RNA polymerase *(PAP5/TAC12) & transcriptional coactivator *(HEMERA)","protein_coding"
"Brara.E01202.1","No alias","Brassica rapa","assembly factor (SAD2/EMA) of RNA-induced silencing complex (RISC) assembly","protein_coding"
"Brara.E02336.1","No alias","Brassica rapa","regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway","protein_coding"
"Brara.E02594.1","No alias","Brassica rapa","assembly factor involved in ITS1 rRNA removal *(BRIX1)","protein_coding"
"Brara.E02790.1","No alias","Brassica rapa","pre-40S ribosomal-subunit proteome nuclear export factor *(Dim2)","protein_coding"
"Brara.E03274.1","No alias","Brassica rapa","SSU processome assembly factor *(UTP10)","protein_coding"
"Brara.E03540.1","No alias","Brassica rapa","regulatory protein *(SBA) of mitochondrial nucleoid organization","protein_coding"
"Brara.E03571.1","No alias","Brassica rapa","component *(eS7) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Brara.F00004.1","No alias","Brassica rapa","scaffold component *(Nop56) of snoRNP rRNA methylation complex","protein_coding"
"Brara.F00105.1","No alias","Brassica rapa","component *(mS84) of small mitoribosomal-subunit proteome","protein_coding"
"Brara.F00419.1","No alias","Brassica rapa","component *(Toc64-III) of outer envelope TOC translocation system","protein_coding"
"Brara.F01078.1","No alias","Brassica rapa","cofactor of plastid-encoded RNA polymerase *(TAC17)","protein_coding"
"Brara.F02050.1","No alias","Brassica rapa","membrane-anchored lectin chaperone *(CNX)","protein_coding"
"Brara.F02068.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F02162.1","No alias","Brassica rapa","component *(mS81) of small mitoribosomal-subunit proteome","protein_coding"
"Brara.F02881.1","No alias","Brassica rapa","scaffold component *(Nop58) of snoRNP rRNA methylation complex","protein_coding"
"Brara.F03700.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F03753.1","No alias","Brassica rapa","component *(eIF3d) of eIF3 mRNA-to-PIC binding complex","protein_coding"
"Brara.G00077.1","No alias","Brassica rapa","histone methylase *(PRMT1)","protein_coding"
"Brara.G00543.1","No alias","Brassica rapa","SSU processome assembly factor *(ENP1)","protein_coding"
"Brara.G01517.1","No alias","Brassica rapa","component *(eS10) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Brara.G01728.1","No alias","Brassica rapa","pseudouridine synthase component *(Nap57/CBF5) of H/ACA snoRNP RNA pseudouridylation complex","protein_coding"
"Brara.G01811.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.G02154.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.G02937.1","No alias","Brassica rapa","group-II intron splicing RNA helicase *(ISE2)","protein_coding"
"Brara.G03038.1","No alias","Brassica rapa","component *(VPS52/POK) of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes","protein_coding"
"Brara.G03097.1","No alias","Brassica rapa","multisubstrate deoxyribonucleoside kinase *(TK2) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding"
"Brara.H00011.1","No alias","Brassica rapa","scaffold component *(Nop56) of snoRNP rRNA methylation complex","protein_coding"
"Brara.H00932.1","No alias","Brassica rapa","regulatory protein *(RGG) of mRNA quality control","protein_coding"
"Brara.H01495.1","No alias","Brassica rapa","SSU processome assembly factor *(UTP6)","protein_coding"
"Brara.H01743.1","No alias","Brassica rapa","chaperone HSCA of mitochondrial ISC system transfer phase & chaperone component *(mtHSP70) of inner mitochondrion membrane TIM translocation system & chaperone *(mtHsc70))","protein_coding"
"Brara.H02216.1","No alias","Brassica rapa","component *(uL15) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Brara.I00283.1","No alias","Brassica rapa","component of FtsH3/10 matrix-AAA protease heterodimer","protein_coding"
"Brara.I00439.1","No alias","Brassica rapa","scaffold component *(Nop58) of snoRNP rRNA methylation complex","protein_coding"
"Brara.I00549.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I00625.1","No alias","Brassica rapa","dihydroorotate dehydrogenase *(PYRD) & EC_1.3 oxidoreductase acting on CH-CH group of donor","protein_coding"
"Brara.I00645.1","No alias","Brassica rapa","RNA editing factor *(ORRM3)","protein_coding"
"Brara.I01248.1","No alias","Brassica rapa","cofactor of plastid-encoded RNA polymerase *(PAP11/MURE) & catalytic protein *(MurE) of UDP-N-acetylmuramic acid pentapeptide formation","protein_coding"
"Brara.I01387.1","No alias","Brassica rapa","GMP synthetase *(GMPS) & EC_6.3 ligase forming carbon-nitrogen bond","protein_coding"
"Brara.I01839.1","No alias","Brassica rapa","component *(eIF3d) of eIF3 mRNA-to-PIC binding complex","protein_coding"
"Brara.I02355.1","No alias","Brassica rapa","subunit alpha of NAC ribosome-associated chaperone complex","protein_coding"
"Brara.I03141.1","No alias","Brassica rapa","component *(mS23) of small mitoribosomal-subunit proteome","protein_coding"
"Brara.I03194.1","No alias","Brassica rapa","ribonuclease *(RNH1)","protein_coding"
"Brara.I03364.1","No alias","Brassica rapa","component *(TRM112) of TRM11-TRM112 tRNA guanosine-methyltransferase complex & component *(TRM112) of TRM9-TRM112 tRNA uridine-methyltransferase complex","protein_coding"
"Brara.I03803.1","No alias","Brassica rapa","component *(NOC2) of ribosomal-subunit proteome nuclear export complexes","protein_coding"
"Brara.I04106.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I04730.1","No alias","Brassica rapa","substrate adaptor *(HTD1/DWD1) of CUL4-based E3 ubiquitin ligase complex","protein_coding"
"Brara.I05045.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I05514.1","No alias","Brassica rapa","component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination heterodimer","protein_coding"
"Brara.J00189.1","No alias","Brassica rapa","non-core component *(NAF1) of H/ACA snoRNP RNA pseudouridylation complex","protein_coding"
"Brara.J01919.1","No alias","Brassica rapa","component *(mS81) of small mitoribosomal-subunit proteome","protein_coding"
"Brara.J02070.1","No alias","Brassica rapa","component *(ELP1) of ELONGATOR transcription elongation complex","protein_coding"
"Brara.J02123.1","No alias","Brassica rapa","substrate adaptor *(ARIA) of CUL3-based E3 ubiquitin ligase complex","protein_coding"
"Brara.J02612.1","No alias","Brassica rapa","component *(eIF3g) of eIF3 mRNA-to-PIC binding complex","protein_coding"
"Brara.K00179.1","No alias","Brassica rapa","MRM2-type rRNA methyltransferase","protein_coding"
"Brara.K00282.1","No alias","Brassica rapa","DNA bending architectural protein *(HMG-B)","protein_coding"
"Brara.K00510.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.K01473.1","No alias","Brassica rapa","component *(eL8) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Cre01.g002200","No alias","Chlamydomonas reinhardtii","RNA polymerase Rpb6","protein_coding"
"Cre01.g009950","No alias","Chlamydomonas reinhardtii","nucleolar essential protein-related","protein_coding"
"Cre01.g015300","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre01.g044400","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre01.g048950","No alias","Chlamydomonas reinhardtii","uridine 5\'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)","protein_coding"
"Cre01.g051000","No alias","Chlamydomonas reinhardtii","arginine methyltransferase 11","protein_coding"
"Cre02.g092900","No alias","Chlamydomonas reinhardtii","GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative","protein_coding"
"Cre02.g101950","No alias","Chlamydomonas reinhardtii","zinc finger (CCCH-type) family protein","protein_coding"
"Cre02.g141200","No alias","Chlamydomonas reinhardtii","quinolinate phoshoribosyltransferase","protein_coding"
"Cre03.g183900","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre03.g186650","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre03.g205600","No alias","Chlamydomonas reinhardtii","Lojap-related protein","protein_coding"
"Cre05.g234050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre05.g234651","No alias","Chlamydomonas reinhardtii","Galactose mutarotase-like superfamily protein","protein_coding"
"Cre05.g238364","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre06.g248800","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre06.g283300","No alias","Chlamydomonas reinhardtii","Ankyrin repeat family protein","protein_coding"
"Cre06.g302650","No alias","Chlamydomonas reinhardtii","FtsJ-like methyltransferase family protein","protein_coding"
"Cre07.g312750","No alias","Chlamydomonas reinhardtii","Nucleic acid-binding, OB-fold-like protein","protein_coding"
"Cre07.g319900","No alias","Chlamydomonas reinhardtii","PNAS-3 related","protein_coding"
"Cre08.g377450","No alias","Chlamydomonas reinhardtii","ARM repeat superfamily protein","protein_coding"
"Cre09.g398200","No alias","Chlamydomonas reinhardtii","Galactose oxidase/kelch repeat superfamily protein","protein_coding"
"Cre09.g407850","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre09.g407900","No alias","Chlamydomonas reinhardtii","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding"
"Cre10.g422000","No alias","Chlamydomonas reinhardtii","N2,N2-dimethylguanosine tRNA methyltransferase","protein_coding"
"Cre10.g428100","No alias","Chlamydomonas reinhardtii","N2,N2-dimethylguanosine tRNA methyltransferase","protein_coding"
"Cre11.g467550","No alias","Chlamydomonas reinhardtii","pyrimidin 4","protein_coding"
"Cre12.g485900","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g512550","No alias","Chlamydomonas reinhardtii","Trm112p-like protein","protein_coding"
"Cre12.g520200","No alias","Chlamydomonas reinhardtii","Pyridoxamine 5\'-phosphate oxidase family protein","protein_coding"
"Cre13.g571950","No alias","Chlamydomonas reinhardtii","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding"
"Cre13.g580550","No alias","Chlamydomonas reinhardtii","SET domain protein 35","protein_coding"
"Cre14.g624500","No alias","Chlamydomonas reinhardtii","Ribosomal protein S5 domain 2-like superfamily protein","protein_coding"
"Cre15.g638101","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre16.g649400","No alias","Chlamydomonas reinhardtii","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding"
"Cre16.g653350","No alias","Chlamydomonas reinhardtii","UDP-3-O-acyl N-acetylglycosamine deacetylase family protein","protein_coding"
"Cre17.g744997","No alias","Chlamydomonas reinhardtii","FAD/NAD(P)-binding oxidoreductase family protein","protein_coding"
"evm.model.contig_2019.9","No alias","Porphyridium purpureum","(at1g63660 : 473.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 946.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2022.12","No alias","Porphyridium purpureum","(at3g45890 : 151.0) Encodes RUS1 (root UVB sensitive 1), a protein that contains DUF647 (domain of unknown function 647), a domain highly conserved in eukaryotes.  The primary root of rus1 is hypersensitive to very low-fluence-rate (VLF) UVB.; ROOT UVB SENSITIVE 1 (RUS1); INVOLVED IN: response to UV-B, developmental process; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: lateral root, root apical meristem, callus, elongation zone, embryonic root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT1G13770.1); Has 458 Blast hits to 456 proteins in 133 species: Archae - 0; Bacteria - 2; Metazoa - 116; Fungi - 71; Plants - 198; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink). & (reliability: 302.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2022.13","No alias","Porphyridium purpureum","(at1g10490 : 763.0) CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1726 (InterPro:IPR013562), Domain  of unknown function DUF699, exodeoxyribonuclease V alpha chain (InterPro:IPR007807); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) (TAIR:AT3G57940.1); Has 1351 Blast hits to 1310 proteins in 616 species: Archae - 139; Bacteria - 698; Metazoa - 170; Fungi - 143; Plants - 51; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). & (reliability: 1526.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2025.2","No alias","Porphyridium purpureum","(at5g26830 : 734.0) Encodes a dual-targeted threonyl-tRNA synthetase found in both the chloroplast and mitochondrion.; Threonyl-tRNA synthetase; FUNCTIONS IN: ligase activity, forming aminoacyl-tRNA and related compounds, threonine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: threonyl-tRNA aminoacylation, tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, cell wall, chloroplast, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Threonyl-tRNA synthetase, class IIa (InterPro:IPR002320), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Threonyl/alanyl tRNA synthetase, SAD (InterPro:IPR012947), TGS-like (InterPro:IPR012676), TGS (InterPro:IPR004095), Anticodon-binding (InterPro:IPR004154), Threonyl-tRNA synthetase, class IIa, conserved region (InterPro:IPR018158); BEST Arabidopsis thaliana protein match is: threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (TAIR:AT2G04842.1); Has 19313 Blast hits to 19116 proteins in 2937 species: Archae - 413; Bacteria - 11477; Metazoa - 486; Fungi - 321; Plants - 109; Viruses - 0; Other Eukaryotes - 6507 (source: NCBI BLink). & (reliability: 1468.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2025.28","No alias","Porphyridium purpureum","(at4g39280 : 503.0) phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative; FUNCTIONS IN: phenylalanine-tRNA ligase activity, tRNA binding, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: phenylalanyl-tRNA aminoacylation, tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit (InterPro:IPR004529), Phenylalanyl-tRNA synthetase alpha chain (InterPro:IPR002319), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: phenylalanyl-tRNA synthetase class IIc family protein (TAIR:AT3G58140.1). & (reliability: 1006.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2025.47","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2033.1","No alias","Porphyridium purpureum","(at3g20000 : 206.0) Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore.; translocase of the outer mitochondrial membrane 40 (TOM40); FUNCTIONS IN: voltage-gated anion channel activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein targeting to mitochondrion, anion transport; LOCATED IN: mitochondrial outer membrane, mitochondrion, mitochondrial inner membrane, plasma membrane, mitochondrial outer membrane translocase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: Eukaryotic porin family protein (TAIR:AT1G50400.1); Has 530 Blast hits to 530 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 257; Fungi - 140; Plants - 72; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink). & (reliability: 412.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2034.12","No alias","Porphyridium purpureum","(at5g26360 : 620.0) TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, gamma subunit (InterPro:IPR012719), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p54411|tcpe2_avesa : 278.0) T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K36) - Avena sativa (Oat) & (reliability: 1240.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2034.16","No alias","Porphyridium purpureum","(at1g69020 : 150.0) Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT5G66960.1); Has 6703 Blast hits to 6563 proteins in 1132 species: Archae - 51; Bacteria - 2817; Metazoa - 295; Fungi - 25; Plants - 196; Viruses - 0; Other Eukaryotes - 3319 (source: NCBI BLink). & (reliability: 300.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2046.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2048.1","No alias","Porphyridium purpureum","(at4g02930 : 543.0) GTP binding Elongation factor Tu family protein; FUNCTIONS IN: translation elongation factor activity, cobalt ion binding, zinc ion binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, bacterial/organelle (InterPro:IPR004541), Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog E1B (TAIR:AT4G20360.1); Has 89361 Blast hits to 89296 proteins in 17600 species: Archae - 1195; Bacteria - 40691; Metazoa - 19476; Fungi - 9897; Plants - 2075; Viruses - 6; Other Eukaryotes - 16021 (source: NCBI BLink). & (q9mup0|eftu_mesvi : 493.0) Elongation factor Tu (EF-Tu) - Mesostigma viride & (reliability: 1086.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2051.33","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2052.7","No alias","Porphyridium purpureum","(at4g18905 : 218.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G18900.1). & (reliability: 436.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2054.2","No alias","Porphyridium purpureum","(at3g20390 : 118.0) endoribonuclease L-PSP family protein; FUNCTIONS IN: endoribonuclease activity; INVOLVED IN: response to cadmium ion; LOCATED IN: thylakoid, mitochondrion, chloroplast, plastid, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Endoribonuclease L-PSP (InterPro:IPR006175), YjgF-like protein, conserved site (InterPro:IPR019897), Endoribonuclease L-PSP/chorismate mutase-like (InterPro:IPR013813), YjgF-like protein (InterPro:IPR006056); Has 9982 Blast hits to 9763 proteins in 2269 species: Archae - 153; Bacteria - 7551; Metazoa - 243; Fungi - 414; Plants - 68; Viruses - 0; Other Eukaryotes - 1553 (source: NCBI BLink). & (reliability: 236.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2062.9","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding"
"evm.model.contig_2075.1","No alias","Porphyridium purpureum","(at5g52820 : 508.0) WD-40 repeat family protein / notchless protein, putative; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), NLE (InterPro:IPR012972), WD40 repeat (InterPro:IPR001680), G-protein, beta subunit (InterPro:IPR001632), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p93340|gblp_nicpl : 111.0) Guanine nucleotide-binding protein subunit beta-like protein - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (reliability: 1016.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2084.16","No alias","Porphyridium purpureum","(at2g42810 : 468.0) Encodes a phytochrome-specific type 5 serine/threonine protein phosphatase. It dephosphorylates active Pfr-phytochromes. Controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. The gene is alternately spliced. This variant is an integral membrane protein localized to the ER and nuclear envelope.; protein phosphatase 5.2 (PP5.2); FUNCTIONS IN: protein binding, phosphoprotein phosphatase activity, protein serine/threonine phosphatase activity; INVOLVED IN: response to cadmium ion, nucleocytoplasmic transport, red or far-red light signaling pathway; LOCATED IN: nuclear envelope, integral to endoplasmic reticulum membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Metallophosphoesterase (InterPro:IPR004843), Protein phosphatase 5 (InterPro:IPR011236), Tetratricopeptide-like helical (InterPro:IPR011990), Serine/threonine phosphatase, PPP5 (InterPro:IPR013235), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT5G27840.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p48490|pp1_phavu : 186.0) Serine/threonine-protein phosphatase PP1 (EC 3.1.3.16) - Phaseolus vulgaris (Kidney bean) (French bean) & (reliability: 936.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2097.3","No alias","Porphyridium purpureum","(at1g09620 : 922.0) ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases; FUNCTIONS IN: nucleotide binding, aminoacyl-tRNA ligase activity, leucine-tRNA ligase activity, ATP binding; INVOLVED IN: leucyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Leucyl-tRNA synthetase, class Ia, archaeal/eukaryotic cytosolic (InterPro:IPR004493); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (I, L, M and V) family protein (TAIR:AT4G04350.1); Has 16931 Blast hits to 15894 proteins in 2953 species: Archae - 757; Bacteria - 11010; Metazoa - 639; Fungi - 488; Plants - 264; Viruses - 0; Other Eukaryotes - 3773 (source: NCBI BLink). & (reliability: 1844.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2106.3","No alias","Porphyridium purpureum","(at5g63630 : 366.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G08610.1); Has 41050 Blast hits to 40248 proteins in 2998 species: Archae - 715; Bacteria - 20319; Metazoa - 6002; Fungi - 4604; Plants - 2553; Viruses - 10; Other Eukaryotes - 6847 (source: NCBI BLink). & (p46942|db10_nicsy : 164.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 732.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2110.1","No alias","Porphyridium purpureum","(at5g27470 : 511.0) seryl-tRNA synthetase / serine--tRNA ligase; FUNCTIONS IN: serine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion, seryl-tRNA aminoacylation; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Seryl-tRNA synthetase, class IIa, N-terminal (InterPro:IPR015866), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Seryl-tRNA synthetase, class IIa (InterPro:IPR002317), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Seryl-tRNA synthetase, class IIa, C-terminal (InterPro:IPR018156); BEST Arabidopsis thaliana protein match is: Seryl-tRNA synthetase (TAIR:AT1G11870.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o81983|sys_helan : 497.0) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) - Helianthus annuus (Common sunflower) & (reliability: 1022.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2112.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2122.20","No alias","Porphyridium purpureum","(at3g12290 : 350.0) Amino acid dehydrogenase family protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: folic acid and derivative biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain (InterPro:IPR020631), Tetrahydrofolate dehydrogenase/cyclohydrolase (InterPro:IPR000672), NAD(P)-binding domain (InterPro:IPR016040), Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site (InterPro:IPR020867), Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain (InterPro:IPR020630); BEST Arabidopsis thaliana protein match is: Amino acid dehydrogenase family protein (TAIR:AT4G00620.1); Has 9969 Blast hits to 9964 proteins in 2781 species: Archae - 105; Bacteria - 5648; Metazoa - 394; Fungi - 308; Plants - 157; Viruses - 0; Other Eukaryotes - 3357 (source: NCBI BLink). & (reliability: 700.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2126.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2143.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2149.11","No alias","Porphyridium purpureum","(at2g17440 : 88.2) Encodes PIRL5, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.; plant intracellular ras group-related LRR 5 (PIRL5); LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 4 (TAIR:AT4G35470.1); Has 100264 Blast hits to 38283 proteins in 1358 species: Archae - 22; Bacteria - 10106; Metazoa - 37622; Fungi - 3439; Plants - 42778; Viruses - 28; Other Eukaryotes - 6269 (source: NCBI BLink). & (reliability: 171.8) &  (original description: no original description)","protein_coding"
"evm.model.contig_2179.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2181.2","No alias","Porphyridium purpureum","(at2g46290 : 281.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: TGF-beta receptor interacting protein 1 (TAIR:AT2G46280.2); Has 51915 Blast hits to 23729 proteins in 705 species: Archae - 52; Bacteria - 7544; Metazoa - 20576; Fungi - 11592; Plants - 5771; Viruses - 0; Other Eukaryotes - 6380 (source: NCBI BLink). & (reliability: 560.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2216.3","No alias","Porphyridium purpureum","(at2g40290 : 269.0) Eukaryotic translation initiation factor 2 subunit 1; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Eukaryotic translation initiation factor 2, alpha subunit (InterPro:IPR011488); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 alpha subunit (TAIR:AT5G05470.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 538.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2251.1","No alias","Porphyridium purpureum","(at5g55920 : 395.0) Encodes a homolog of the S. cerevisiae Nop2 that is involved in ribosome biogenesis and plays a role on organ size control by promoting cell proliferation and preventing compensation in normal leaf development.; OLIGOCELLULA 2 (OLI2); FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity, RNA binding; INVOLVED IN: cell proliferation, leaf morphogenesis, root morphogenesis; LOCATED IN: nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), Nop2p (InterPro:IPR011023); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26600.1); Has 62513 Blast hits to 30741 proteins in 2867 species: Archae - 614; Bacteria - 24553; Metazoa - 13287; Fungi - 6403; Plants - 2067; Viruses - 622; Other Eukaryotes - 14967 (source: NCBI BLink). & (reliability: 790.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2262.8","No alias","Porphyridium purpureum","(at2g37860 : 163.0) Encodes a protein of unknown function.  Mutants have pale leaves, lower cell density in the palisade parenchyma and increased sensitivity to ozone and virulent Pseudomonas syringae; LOWER CELL DENSITY 1 (LCD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: leaf development; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: reticulata-related 1 (TAIR:AT5G22790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 326.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2276.12","No alias","Porphyridium purpureum","(at3g26570 : 121.0) low affinity phosphate transporter; phosphate transporter 2;1 (PHT2;1); FUNCTIONS IN: low affinity phosphate transmembrane transporter activity; INVOLVED IN: phosphate transport; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphate transporter (InterPro:IPR001204); Has 12859 Blast hits to 5765 proteins in 1814 species: Archae - 502; Bacteria - 8606; Metazoa - 781; Fungi - 657; Plants - 230; Viruses - 6; Other Eukaryotes - 2077 (source: NCBI BLink). & (reliability: 242.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2288.12","No alias","Porphyridium purpureum","(at1g72550 : 520.0) tRNA synthetase beta subunit family protein; FUNCTIONS IN: RNA binding, phenylalanine-tRNA ligase activity, magnesium ion binding, nucleotide binding, ATP binding; INVOLVED IN: phenylalanyl-tRNA aminoacylation, translation; LOCATED IN: phenylalanine-tRNA ligase complex, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Putative DNA binding domain (InterPro:IPR009061), tRNA synthetase, B5 (InterPro:IPR005147), Phenylalanyl-tRNA synthetase, class IIc, beta subunit, archae/euk cytosolic (InterPro:IPR004531), B3/B4 tRNA-binding domain (InterPro:IPR005146); Has 5993 Blast hits to 5980 proteins in 2451 species: Archae - 257; Bacteria - 4083; Metazoa - 257; Fungi - 153; Plants - 58; Viruses - 0; Other Eukaryotes - 1185 (source: NCBI BLink). & (reliability: 1040.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2299.2","No alias","Porphyridium purpureum","(q02073|ch10c_spiol : 112.0) 20 kDa chaperonin, chloroplast precursor (Protein Cpn21) (Chloroplast protein Cpn10) (Chloroplast chaperonin 10) (Ch-CPN10) - Spinacia oleracea (Spinach) & (at5g20720 : 110.0) Encodes a chloroplast co-chaperonin with similarity to CPN21 from spinach, E.coli GroES.; chaperonin 20 (CPN20); CONTAINS InterPro DOMAIN/s: Chaperonin Cpn10 (InterPro:IPR020818), GroES-like (InterPro:IPR011032), Chaperonin Cpn10, conserved site (InterPro:IPR018369), Chaperonin 21, chloroplast (InterPro:IPR017416), Chaperonin Cpn10, subgroup (InterPro:IPR001476); BEST Arabidopsis thaliana protein match is: chaperonin 10 (TAIR:AT1G14980.1). & (reliability: 220.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2345.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_2353.1","No alias","Porphyridium purpureum","(at3g57290 : 410.0) Encodes a protein that is found in not only the eif3 complex but also in association with subunits of the COP9 signalosome. eIF3e appears to be subjected to proteasome-dependent degradation that requires the PCI domain of eIF3e. The level of eIF3e present in cells appears to affect the rate of translation.; eukaryotic translation initiation factor 3E (EIF3E); FUNCTIONS IN: protein binding, translation initiation factor activity; INVOLVED IN: flower development, response to salt stress, translation, photomorphogenesis, transcription initiation; LOCATED IN: signalosome, eukaryotic translation initiation factor 3 complex, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor 3, subunit 6, eukaryotic (InterPro:IPR016650), Proteasome component (PCI) domain (InterPro:IPR000717), Eukaryotic translation initiation factor 3 (eIF3), subunit 6, N-terminal (InterPro:IPR019010); Has 641 Blast hits to 638 proteins in 243 species: Archae - 0; Bacteria - 2; Metazoa - 287; Fungi - 119; Plants - 138; Viruses - 0; Other Eukaryotes - 95 (source: NCBI BLink). & (reliability: 820.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2421.10","No alias","Porphyridium purpureum","(at5g26710 : 526.0) Glutamyl/glutaminyl-tRNA synthetase, class Ic; FUNCTIONS IN: glutamate-tRNA ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation, tRNA aminoacylation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Glutamyl/glutaminyl-tRNA synthetase, class Ic, alpha-bundle domain (InterPro:IPR020061), Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain (InterPro:IPR020056), Glutamyl/glutaminyl-tRNA synthetase, class Ic, N-terminal (InterPro:IPR020060), Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain (InterPro:IPR011035), Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain (InterPro:IPR020058), Glutamyl/glutaminyl-tRNA synthetase, class Ic (InterPro:IPR000924), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutamyl-tRNA synthetase, class Ic, archaeal/eukaryotic cytosolic (InterPro:IPR004526), Glutamyl/glutaminyl-tRNA synthetase, class Ic, anti-codon binding domain (InterPro:IPR020059); BEST Arabidopsis thaliana protein match is: glutamine-tRNA ligase, putative / glutaminyl-tRNA synthetase, putative / GlnRS, putative (TAIR:AT1G25350.1); Has 14411 Blast hits to 14402 proteins in 2977 species: Archae - 262; Bacteria - 9488; Metazoa - 657; Fungi - 449; Plants - 238; Viruses - 0; Other Eukaryotes - 3317 (source: NCBI BLink). & (p52780|syq_luplu : 275.0) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA ligase) (GlnRS) - Lupinus luteus (European yellow lupin) & (reliability: 1052.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2494.20","No alias","Porphyridium purpureum","(at1g04170 : 486.0) protein synthesis initiation factor eIF2 gamma; eukaryotic translation initiation factor 2 gamma subunit (EIF2 GAMMA); CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Initiation factor eIF2 gamma, C-terminal (InterPro:IPR015256), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation elongation factor EF1A/initiation factor IF2gamma family protein (TAIR:AT4G18330.2); Has 29259 Blast hits to 29225 proteins in 6532 species: Archae - 651; Bacteria - 17093; Metazoa - 4832; Fungi - 574; Plants - 965; Viruses - 0; Other Eukaryotes - 5144 (source: NCBI BLink). & (reliability: 972.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2500.3","No alias","Porphyridium purpureum","(at3g12170 : 120.0) Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: J-domain protein 6 (TAIR:AT5G06910.1); Has 23895 Blast hits to 23888 proteins in 3317 species: Archae - 171; Bacteria - 9423; Metazoa - 4258; Fungi - 2263; Plants - 2420; Viruses - 67; Other Eukaryotes - 5293 (source: NCBI BLink). & (reliability: 240.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2673.3","No alias","Porphyridium purpureum","(at2g18900 : 111.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT3G26480.1); Has 4620 Blast hits to 3140 proteins in 363 species: Archae - 18; Bacteria - 1955; Metazoa - 712; Fungi - 1091; Plants - 306; Viruses - 0; Other Eukaryotes - 538 (source: NCBI BLink). & (reliability: 222.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3383.12","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3385.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3390.5","No alias","Porphyridium purpureum","(at3g51800 : 276.0) putative nuclear DNA-binding protein G2p (AtG2) mRNA,; ATG2; FUNCTIONS IN: metalloexopeptidase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Proliferation-associated protein 1 (InterPro:IPR004545), Peptidase M24, methionine aminopeptidase (InterPro:IPR001714); BEST Arabidopsis thaliana protein match is: methionine aminopeptidase 2A (TAIR:AT2G44180.1). & (reliability: 552.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3403.9","No alias","Porphyridium purpureum","(at1g32080 : 204.0) membrane protein, putative; LOCATED IN: chloroplast, chloroplast inner membrane, membrane, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LrgB-like protein (InterPro:IPR007300); Has 3603 Blast hits to 3592 proteins in 1271 species: Archae - 22; Bacteria - 3356; Metazoa - 0; Fungi - 58; Plants - 57; Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink). & (reliability: 408.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3404.17","No alias","Porphyridium purpureum","(at5g45160 : 115.0) Root hair defective 3 GTP-binding protein (RHD3); FUNCTIONS IN: GTP binding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Root hair defective 3 GTP-binding (InterPro:IPR008803); BEST Arabidopsis thaliana protein match is: Root hair defective 3 GTP-binding protein (RHD3) (TAIR:AT3G13870.1); Has 535 Blast hits to 521 proteins in 188 species: Archae - 0; Bacteria - 2; Metazoa - 73; Fungi - 186; Plants - 129; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink). & (reliability: 230.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3407.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3425.7","No alias","Porphyridium purpureum","(at3g11830 : 665.0) TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), T-complex protein 1, eta subunit (InterPro:IPR012720), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: T-complex protein 1 alpha subunit (TAIR:AT3G20050.1). & (p40412|tcpe1_avesa : 246.0) T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K19) - Avena sativa (Oat) & (reliability: 1330.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3443.11","No alias","Porphyridium purpureum","(at4g11120 : 101.0) translation elongation factor Ts (EF-Ts), putative; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor Ts, conserved site (InterPro:IPR018101), Translation elongation factor EFTs/EF1B (InterPro:IPR001816), UBA-like (InterPro:IPR009060), Translation elongation factor EFTs/EF1B, dimerisation (InterPro:IPR014039); BEST Arabidopsis thaliana protein match is: elongation factor Ts family protein (TAIR:AT4G29060.1); Has 9471 Blast hits to 8571 proteins in 2664 species: Archae - 0; Bacteria - 5908; Metazoa - 120; Fungi - 25; Plants - 215; Viruses - 0; Other Eukaryotes - 3203 (source: NCBI BLink). & (reliability: 202.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3444.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3450.10","No alias","Porphyridium purpureum","(q9lgr0|ssp1a_orysa : 251.0) FACT complex subunit SSRP1-A (Facilitates chromatin transcription complex subunit SSRP1-A) (Recombination signal sequence recognition protein 1-A) (Early drought-induced protein R1G1A) - Oryza sativa (Rice) & (at3g28730 : 245.0) encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SSRP1. Along with STP16 binds to the promoter of FLC.; high mobility group (HMG); CONTAINS InterPro DOMAIN/s: Structure-specific recognition protein (InterPro:IPR000969), High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B1 (TAIR:AT3G51880.2); Has 8066 Blast hits to 7188 proteins in 653 species: Archae - 0; Bacteria - 14; Metazoa - 5623; Fungi - 822; Plants - 671; Viruses - 15; Other Eukaryotes - 921 (source: NCBI BLink). & (reliability: 490.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3456.2","No alias","Porphyridium purpureum","(at3g15610 : 270.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G52730.1); Has 43706 Blast hits to 23089 proteins in 800 species: Archae - 76; Bacteria - 7357; Metazoa - 15603; Fungi - 10314; Plants - 4879; Viruses - 0; Other Eukaryotes - 5477 (source: NCBI BLink). & (reliability: 540.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3457.1","No alias","Porphyridium purpureum","(at3g04820 : 173.0) Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, TruD (InterPro:IPR001656), Pseudouridine synthase TruD, eukaryotic (InterPro:IPR017091), Pseudouridine synthase, TruD, insertion domain (InterPro:IPR011760); Has 2276 Blast hits to 2198 proteins in 933 species: Archae - 260; Bacteria - 1262; Metazoa - 203; Fungi - 153; Plants - 61; Viruses - 0; Other Eukaryotes - 337 (source: NCBI BLink). & (reliability: 346.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3464.1","No alias","Porphyridium purpureum","(at3g03060 : 297.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATPase activity, zinc ion binding; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Protein of unknown function DUF3523 (InterPro:IPR021911); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G16930.1); Has 38046 Blast hits to 31515 proteins in 3061 species: Archae - 1414; Bacteria - 11706; Metazoa - 8052; Fungi - 4459; Plants - 2737; Viruses - 110; Other Eukaryotes - 9568 (source: NCBI BLink). & (reliability: 594.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3464.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3478.9","No alias","Porphyridium purpureum","(at1g15440 : 433.0) periodic tryptophan protein 2 (PWP2); FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Small-subunit processome, Utp12 (InterPro:IPR007148), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G11160.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q39336|gblp_brana : 99.0) Guanine nucleotide-binding protein subunit beta-like protein - Brassica napus (Rape) & (reliability: 866.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3482.3","No alias","Porphyridium purpureum","(at1g09150 : 159.0) pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Translation-associated RNA-binding, predicted (InterPro:IPR016437), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor SUI1 family protein (TAIR:AT1G71350.1); Has 885 Blast hits to 883 proteins in 291 species: Archae - 148; Bacteria - 0; Metazoa - 325; Fungi - 155; Plants - 86; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink). & (reliability: 318.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3494.9","No alias","Porphyridium purpureum","(at2g18220 : 99.0) Noc2p family; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0120 (InterPro:IPR005343); BEST Arabidopsis thaliana protein match is: Noc2p family (TAIR:AT3G55510.1); Has 4709 Blast hits to 3397 proteins in 331 species: Archae - 4; Bacteria - 179; Metazoa - 1693; Fungi - 681; Plants - 249; Viruses - 70; Other Eukaryotes - 1833 (source: NCBI BLink). & (q8lnu5|noc2l_orysa : 83.2) Nucleolar complex protein 2 homolog (Protein NOC2 homolog) - Oryza sativa (Rice) & (reliability: 198.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3514.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3542.10","No alias","Porphyridium purpureum","(at3g02200 : 140.0) Proteasome component (PCI) domain protein; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: Proteasome component (PCI) domain protein (TAIR:AT5G15610.2); Has 657 Blast hits to 657 proteins in 209 species: Archae - 0; Bacteria - 2; Metazoa - 271; Fungi - 161; Plants - 136; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink). & (reliability: 280.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3631.2","No alias","Porphyridium purpureum","(at5g40770 : 308.0) prohibitin 3; prohibitin 3 (PHB3); INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: prohibitin 4 (TAIR:AT3G27280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 616.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3640.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_437.8","No alias","Porphyridium purpureum","(at5g20160 : 183.0) Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; FUNCTIONS IN: RNA binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote (InterPro:IPR002415), Ribosomal protein L7Ae/L30e/S12e/Gadd45 (InterPro:IPR004038); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein (TAIR:AT4G22380.1); Has 572 Blast hits to 572 proteins in 228 species: Archae - 12; Bacteria - 0; Metazoa - 202; Fungi - 143; Plants - 95; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink). & (reliability: 366.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4415.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4422.10","No alias","Porphyridium purpureum","(at5g51940 : 110.0) One of two highly similar proteins that can serve as a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB6 and the E. coli RNA polymerase omega subunit. Probably redundant with At2g04630.; NRPB6A; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription, DNA-dependent; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, 14-18kDa subunit, conserved site (InterPro:IPR020708), RNA polymerase subunit, RPB6/omega (InterPro:IPR012293), RNA polymerase Rpb6 (InterPro:IPR006110), DNA-directed RNA polymerase, 14-18kDa subunit (InterPro:IPR006111); BEST Arabidopsis thaliana protein match is: RNA polymerase Rpb6 (TAIR:AT2G04630.1); Has 907 Blast hits to 906 proteins in 313 species: Archae - 223; Bacteria - 0; Metazoa - 99; Fungi - 194; Plants - 79; Viruses - 16; Other Eukaryotes - 296 (source: NCBI BLink). & (reliability: 220.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4422.9","No alias","Porphyridium purpureum","(at4g26900 : 513.0) encodes a glutamine amidotransferase and cyclase, catalyzes the fifth and sixth steps of the histidine biosynthetic pathway; HIS HF (AT-HF); FUNCTIONS IN: imidazoleglycerol-phosphate synthase activity; INVOLVED IN: histidine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Imidazole glycerol phosphate synthase, subunit H (InterPro:IPR010139), Aldolase-type TIM barrel (InterPro:IPR013785), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Ribulose-phosphate binding barrel (InterPro:IPR011060), Histidine biosynthesis, HisF (InterPro:IPR004651), Glutamine amidotransferase type 1 (InterPro:IPR017926), Histidine biosynthesis (InterPro:IPR006062), Imidazole glycerol phosphate synthase HisHF (InterPro:IPR014640); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1026.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4439.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4445.2","No alias","Porphyridium purpureum","(at4g27585 : 292.0) SPFH/Band 7/PHB domain-containing membrane-associated protein family; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, membrane; EXPRESSED IN: callus, leaf; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G54100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 584.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4453.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4455.3","No alias","Porphyridium purpureum","(at5g58230 : 470.0) Encodes a WD-40 repeat containing protein that functions in chromatin assembly as part of the CAF1 and FIE complex. Mutants exhibit parthenogenetic development that includes proliferation of unfertilized endosperm and embryos. In heterozygous plants 50% of embryos abort. Of the aborted embryos the early aborted class are homozygous and the later aborting lass are heterozygotes in which the defective allele is maternally transmitted. Other phenotypes include defects in ovule morphogenesis and organ initiation,as well as increased levels of heterochromatic DNA. MSI1 is needed for the transition to flowering. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis. In the ovule, the MSI1 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization. MSI is biallelically expressed, the paternall allele is expressed in the endosperm and embryo and is not imprinted. MSI1 forms a complex with RBR1 that is required for activation of the imprinted genes FIS2 and FWA. This activation is mediated by MSI1/RBR1 mediated repression of MET1.; MULTICOPY SUPRESSOR OF IRA1 (MSI1); FUNCTIONS IN: protein binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus, chloroplast, chromatin remodeling complex, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone-binding protein RBBP4 (InterPro:IPR022052), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT2G16780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 940.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4464.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_447.4","No alias","Porphyridium purpureum","(at1g31970 : 367.0) STRESS RESPONSE SUPPRESSOR 1 (STRS1); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G63120.2); Has 53114 Blast hits to 49629 proteins in 3238 species: Archae - 911; Bacteria - 25415; Metazoa - 8113; Fungi - 5284; Plants - 3075; Viruses - 103; Other Eukaryotes - 10213 (source: NCBI BLink). & (p46942|db10_nicsy : 282.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (gnl|cdd|68872 : 130.0) no description available & (gnl|cdd|39774 : 83.2) no description available & (reliability: 734.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4487.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4487.12","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4487.2","No alias","Porphyridium purpureum","(at3g03960 : 522.0) TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, theta subunit (InterPro:IPR012721); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G18190.1); Has 15495 Blast hits to 15419 proteins in 3442 species: Archae - 801; Bacteria - 7598; Metazoa - 1836; Fungi - 1369; Plants - 680; Viruses - 0; Other Eukaryotes - 3211 (source: NCBI BLink). & (p54411|tcpe2_avesa : 234.0) T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K36) - Avena sativa (Oat) & (reliability: 1044.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4491.14","No alias","Porphyridium purpureum","(p26259|dapa_maize : 119.0) Dihydrodipicolinate synthase, chloroplast precursor (EC 4.2.1.52) (DHDPS) - Zea mays (Maize) & (at2g45440 : 114.0) Encodes a protein that likely has dihydropicolinate synthase activity based on its mutant phenotype of decreased lysine levels and increased aspartate levels. The mutant also has increased levels of threonine. The enzyme is predicted to localize to the chloroplast.; dihydrodipicolinate synthase (DHDPS2); FUNCTIONS IN: dihydrodipicolinate synthase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate, metabolic process, diaminopimelate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Dihydrodipicolinate synthase subfamily (InterPro:IPR005263), Dihydrodipicolinate synthetase (InterPro:IPR002220), Dihydrodipicolinate synthetase, active site (InterPro:IPR020625), Dihydrodipicolinate synthetase, conserved site (InterPro:IPR020624); BEST Arabidopsis thaliana protein match is: dihydrodipicolinate synthase 1 (TAIR:AT3G60880.2); Has 13334 Blast hits to 13334 proteins in 2656 species: Archae - 353; Bacteria - 9459; Metazoa - 101; Fungi - 305; Plants - 96; Viruses - 0; Other Eukaryotes - 3020 (source: NCBI BLink). & (reliability: 228.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4491.4","No alias","Porphyridium purpureum","(at3g45890 : 160.0) Encodes RUS1 (root UVB sensitive 1), a protein that contains DUF647 (domain of unknown function 647), a domain highly conserved in eukaryotes.  The primary root of rus1 is hypersensitive to very low-fluence-rate (VLF) UVB.; ROOT UVB SENSITIVE 1 (RUS1); INVOLVED IN: response to UV-B, developmental process; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: lateral root, root apical meristem, callus, elongation zone, embryonic root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT1G13770.1); Has 458 Blast hits to 456 proteins in 133 species: Archae - 0; Bacteria - 2; Metazoa - 116; Fungi - 71; Plants - 198; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink). & (reliability: 320.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4509.2","No alias","Porphyridium purpureum","(at3g01120 : 171.0) encodes a cystathionine gamma-synthase, which performs the first committed step in methionine biosynthesis. A conserved motif of 13 amino acids in the first exon is required for posttranscriptional autoregulation. This enzyme shares the same substrate as threonine synthase (TS) and its absence transcriptionally affects 8 genes in the genome.; METHIONINE OVERACCUMULATION 1 (MTO1); FUNCTIONS IN: cystathionine gamma-synthase activity; INVOLVED IN: methionine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Cys/Met metabolism, pyridoxal phosphate-dependent enzyme (InterPro:IPR000277), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT1G33320.1); Has 21364 Blast hits to 20702 proteins in 2452 species: Archae - 220; Bacteria - 11705; Metazoa - 241; Fungi - 842; Plants - 284; Viruses - 13; Other Eukaryotes - 8059 (source: NCBI BLink). & (reliability: 342.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4565.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4594.2","No alias","Porphyridium purpureum","(gnl|cdd|68872 : 150.0) no description available & (at5g17930 : 122.0) MIF4G domain-containing protein / MA3 domain-containing protein; FUNCTIONS IN: binding; INVOLVED IN: RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT1G80930.1); Has 15897 Blast hits to 11268 proteins in 674 species: Archae - 101; Bacteria - 729; Metazoa - 6896; Fungi - 1567; Plants - 651; Viruses - 76; Other Eukaryotes - 5877 (source: NCBI BLink). & (reliability: 244.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_468.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_477.6","No alias","Porphyridium purpureum","(at3g21060 : 117.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 5627 Blast hits to 3991 proteins in 353 species: Archae - 10; Bacteria - 1286; Metazoa - 1502; Fungi - 1496; Plants - 488; Viruses - 0; Other Eukaryotes - 845 (source: NCBI BLink). & (reliability: 234.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_490.4","No alias","Porphyridium purpureum","(at3g07630 : 205.0) Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis.  Not less than six genes encoding ADT were identified in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].; arogenate dehydratase 2 (ADT2); FUNCTIONS IN: arogenate dehydratase activity, prephenate dehydratase activity; INVOLVED IN: L-phenylalanine biosynthetic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydratase (InterPro:IPR001086), Amino acid-binding ACT (InterPro:IPR002912), Prephenate dehydratase, conserved site (InterPro:IPR018528); BEST Arabidopsis thaliana protein match is: arogenate dehydratase 1 (TAIR:AT1G11790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 410.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_490.5","No alias","Porphyridium purpureum","(at3g08943 : 518.0) ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G08947.1); Has 1770 Blast hits to 1697 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 669; Fungi - 578; Plants - 273; Viruses - 0; Other Eukaryotes - 250 (source: NCBI BLink). & (reliability: 1036.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_493.12","No alias","Porphyridium purpureum","(at4g04940 : 260.0) transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: rRNA processing; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), Small-subunit processome, Utp21 (InterPro:IPR007319), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G61210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 520.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_496.11","No alias","Porphyridium purpureum","(at5g04600 : 93.2) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT3G47120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 186.4) &  (original description: no original description)","protein_coding"
"evm.model.contig_497.4","No alias","Porphyridium purpureum","(at3g57150 : 559.0) Encodes a putative pseudouridine synthase (NAP57).; homologue of NAP57 (NAP57); FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification, RNA processing; LOCATED IN: cytosol, nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), H/ACA ribonucleoprotein complex, subunit Cbf5 (InterPro:IPR004802), Pseudouridine synthase II, TruB, N-terminal (InterPro:IPR002501), Dyskerin-like (InterPro:IPR012960), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT5G14460.1); Has 114172 Blast hits to 55339 proteins in 3754 species: Archae - 551; Bacteria - 17094; Metazoa - 41477; Fungi - 11530; Plants - 5704; Viruses - 752; Other Eukaryotes - 37064 (source: NCBI BLink). & (reliability: 1118.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_498.18","No alias","Porphyridium purpureum","(at5g30495 : 87.8) Fcf2 pre-rRNA processing protein; CONTAINS InterPro DOMAIN/s: Fcf2 pre-rRNA processing (InterPro:IPR014810); BEST Arabidopsis thaliana protein match is: Fcf2 pre-rRNA processing protein (TAIR:AT1G54770.1); Has 334 Blast hits to 334 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 124; Plants - 58; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). & (reliability: 175.6) &  (original description: no original description)","protein_coding"
"evm.model.contig_504.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_511.2","No alias","Porphyridium purpureum","(at1g42440 : 249.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06720.1); Has 2741 Blast hits to 2088 proteins in 291 species: Archae - 2; Bacteria - 131; Metazoa - 833; Fungi - 650; Plants - 171; Viruses - 49; Other Eukaryotes - 905 (source: NCBI BLink). & (reliability: 498.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_524.2","No alias","Porphyridium purpureum","(at3g62310 : 724.0) RNA helicase family protein; FUNCTIONS IN: RNA helicase activity, helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT2G47250.1); Has 10517 Blast hits to 9531 proteins in 1639 species: Archae - 4; Bacteria - 3473; Metazoa - 2472; Fungi - 1291; Plants - 883; Viruses - 640; Other Eukaryotes - 1754 (source: NCBI BLink). & (reliability: 1448.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_527.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_567.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_610.2","No alias","Porphyridium purpureum","(at4g20980 : 304.0) Eukaryotic translation initiation factor 3 subunit 7 (eIF-3); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 3, subunit 7 (InterPro:IPR007783); BEST Arabidopsis thaliana protein match is: Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) (TAIR:AT5G44320.1). & (gnl|cdd|68872 : 86.2) no description available & (reliability: 608.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_611.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_611.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_626.1","No alias","Porphyridium purpureum","(at5g53850 : 199.0) haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: hydrolase activity, ion binding, methylthioribulose 1-phosphate dehydratase activity, metal ion binding; INVOLVED IN: L-methionine salvage; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Class II aldolase/adducin, N-terminal (InterPro:IPR001303), Methylthioribulose-1-phosphate dehydratase (InterPro:IPR017714); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 398.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_628.4","No alias","Porphyridium purpureum","(at4g13780 : 149.0) methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative; FUNCTIONS IN: methionine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion, methionyl-tRNA aminoacylation; LOCATED IN: cytosol; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Aminoacyl-tRNA synthetase, class I (M) (InterPro:IPR015413), Methionyl-tRNA synthetase, class Ia (InterPro:IPR002304), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Methionyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR014758), tRNA-binding domain (InterPro:IPR002547); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT2G40660.1); Has 17985 Blast hits to 17920 proteins in 2983 species: Archae - 503; Bacteria - 10276; Metazoa - 591; Fungi - 596; Plants - 228; Viruses - 3; Other Eukaryotes - 5788 (source: NCBI BLink). & (q9zts1|sym_orysa : 135.0) Probable methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA ligase) (MetRS) - Oryza sativa (Rice) & (reliability: 298.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_682.2","No alias","Porphyridium purpureum","(at1g49540 : 134.0) elongator protein 2 (ELP2); FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G11160.1). & (reliability: 268.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_780.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_836.1","No alias","Porphyridium purpureum","(at2g37020 : 114.0) Translin family protein; FUNCTIONS IN: sequence-specific DNA binding, DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translin, C-terminal (InterPro:IPR016069), Translin (InterPro:IPR002848), Translin, N-terminal (InterPro:IPR016068). & (reliability: 228.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_850.2","No alias","Porphyridium purpureum","(at5g14200 : 424.0) The AtIMD1 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids. Encodes methylthioalkylmalate dehydrogenase. Involved in glucosinolate biosynthesis, in methionine chain elongation.; isopropylmalate dehydrogenase 1; FUNCTIONS IN: 3-isopropylmalate dehydrogenase activity; INVOLVED IN: glucosinolate biosynthetic process, leucine biosynthetic process, response to salt stress, metabolic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: root, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Isopropylmalate dehydrogenase (InterPro:IPR004429), Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate/isopropylmalate dehydrogenase, conserved site (InterPro:IPR019818); BEST Arabidopsis thaliana protein match is: isopropylmalate dehydrogenase 3 (TAIR:AT1G31180.1); Has 15391 Blast hits to 15391 proteins in 2664 species: Archae - 400; Bacteria - 8416; Metazoa - 576; Fungi - 851; Plants - 241; Viruses - 0; Other Eukaryotes - 4907 (source: NCBI BLink). & (p29102|leu3_brana : 424.0) 3-isopropylmalate dehydrogenase, chloroplast precursor (EC 1.1.1.85) (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) - Brassica napus (Rape) & (reliability: 848.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000037.25","No alias","Cyanophora paradoxa","(at1g30820 : 617.0) CTP synthase family protein; FUNCTIONS IN: CTP synthase activity, catalytic activity; INVOLVED IN: pyrimidine ribonucleotide metabolic process, pyrimidine nucleotide biosynthetic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), CTP synthase (InterPro:IPR004468), CTP synthase, N-terminal (InterPro:IPR017456), Glutamine amidotransferase type 1 (InterPro:IPR017926); BEST Arabidopsis thaliana protein match is: CTP synthase family protein (TAIR:AT2G34890.1); Has 10946 Blast hits to 10907 proteins in 2949 species: Archae - 238; Bacteria - 5576; Metazoa - 256; Fungi - 232; Plants - 177; Viruses - 0; Other Eukaryotes - 4467 (source: NCBI BLink). & (reliability: 1234.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000057.122","No alias","Cyanophora paradoxa","(at1g63660 : 142.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 284.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000057.123","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000057.124","No alias","Cyanophora paradoxa","(at1g63660 : 184.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 368.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000093.114","No alias","Cyanophora paradoxa","(at1g75330 : 333.0) ornithine carbamoyltransferase (OTC); FUNCTIONS IN: amino acid binding, ornithine carbamoyltransferase activity, carboxyl- or carbamoyltransferase activity; INVOLVED IN: cellular amino acid metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding (InterPro:IPR006132), Aspartate/ornithine carbamoyltransferase (InterPro:IPR006130), Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain (InterPro:IPR006131), Ornithine carbamoyltransferase (InterPro:IPR002292); BEST Arabidopsis thaliana protein match is: PYRIMIDINE B (TAIR:AT3G20330.1); Has 16793 Blast hits to 16793 proteins in 2905 species: Archae - 534; Bacteria - 11079; Metazoa - 203; Fungi - 280; Plants - 150; Viruses - 6; Other Eukaryotes - 4541 (source: NCBI BLink). & (q43814|otc_pea : 333.0) Ornithine carbamoyltransferase, chloroplast precursor (EC 2.1.3.3) (OTCase) (Ornithine transcarbamylase) - Pisum sativum (Garden pea) & (reliability: 666.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000093.151","No alias","Cyanophora paradoxa","(at5g26742 : 291.0) embryo defective 1138 (emb1138); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), GUCT (InterPro:IPR012562), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, CCHC-type (InterPro:IPR001878), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: putative mitochondrial RNA helicase 2 (TAIR:AT3G22330.1). & (q41382|rh7_spiol : 263.0) DEAD-box ATP-dependent RNA helicase 7 (EC 3.6.1.-) - Spinacia oleracea (Spinach) & (reliability: 582.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000093.66","No alias","Cyanophora paradoxa","(at3g26410 : 83.6) methyltransferases;nucleic acid binding; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative RNA methylase (InterPro:IPR000241), tRNA guanosine-2'-O-methyltransferase, TRM11 (InterPro:IPR016691), DNA methylase, N-6 adenine-specific, conserved site (InterPro:IPR002052); Has 597 Blast hits to 588 proteins in 280 species: Archae - 150; Bacteria - 5; Metazoa - 158; Fungi - 132; Plants - 50; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink). & (reliability: 167.2) &  (original description: no original description)","protein_coding"
"evm.model.tig00000113.127","No alias","Cyanophora paradoxa","(at2g39670 : 290.0) Radical SAM superfamily protein; FUNCTIONS IN: iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: cytoplasm; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Elongator protein 3/MiaB/NifB (InterPro:IPR006638), Ribosomal RNA large subunit methyltransferase RlmN; (InterPro:IPR004383), Radical SAM (InterPro:IPR007197); BEST Arabidopsis thaliana protein match is: Radical SAM superfamily protein (TAIR:AT3G19630.1); Has 6992 Blast hits to 6986 proteins in 2311 species: Archae - 11; Bacteria - 5102; Metazoa - 1; Fungi - 1; Plants - 134; Viruses - 5; Other Eukaryotes - 1738 (source: NCBI BLink). & (reliability: 580.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000113.23","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000144.101","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000144.108","No alias","Cyanophora paradoxa","(at5g06550 : 251.0) CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT1G78280.1); Has 1762 Blast hits to 1747 proteins in 292 species: Archae - 0; Bacteria - 297; Metazoa - 877; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). & (reliability: 502.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000144.192","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000144.75","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000157.30","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000178.50","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000241.139","No alias","Cyanophora paradoxa","(at3g21110 : 313.0) 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7, syn. SAICAR synthetase), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone.; purin 7 (PUR7); FUNCTIONS IN: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity; INVOLVED IN: response to auxin stimulus, purine nucleotide biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SAICAR synthetase, conserved site (InterPro:IPR018236), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), SAICAR synthetase (InterPro:IPR001636); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 626.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000241.80","No alias","Cyanophora paradoxa","(at4g38890 : 382.0) FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity, zinc ion binding, nucleic acid binding; INVOLVED IN: oxidation reduction, tRNA processing, metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269), tRNA-dihydrouridine synthase, conserved site (InterPro:IPR018517); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G49640.1); Has 11364 Blast hits to 11268 proteins in 2588 species: Archae - 15; Bacteria - 7817; Metazoa - 496; Fungi - 531; Plants - 173; Viruses - 0; Other Eukaryotes - 2332 (source: NCBI BLink). & (reliability: 764.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000254.81","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000367.49","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000391.17","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000403.69","No alias","Cyanophora paradoxa","(q75kh3|grdh_orysa : 119.0) Glucose and ribitol dehydrogenase homolog (EC 1.1.1.-) - Oryza sativa (Rice) & (at3g26760 : 114.0) NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G26770.1); Has 126181 Blast hits to 125932 proteins in 3632 species: Archae - 1003; Bacteria - 82375; Metazoa - 6104; Fungi - 6827; Plants - 2751; Viruses - 5; Other Eukaryotes - 27116 (source: NCBI BLink). & (reliability: 210.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000404.33","No alias","Cyanophora paradoxa","(at3g08740 : 216.0) elongation factor P (EF-P) family protein; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor P (InterPro:IPR011768), Translation elongation factor P/YeiP, conserved site (InterPro:IPR013852), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, KOW-like (InterPro:IPR013185), Translation protein SH3-like, subgroup (InterPro:IPR014722), Elongation factor P, C-terminal (InterPro:IPR015365), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Translation elongation factor P/YeiP, central (InterPro:IPR001059), Translation elongation factor P/YeiP (InterPro:IPR020599); BEST Arabidopsis thaliana protein match is: elongation factor P (EF-P) family protein (TAIR:AT4G26310.1); Has 10499 Blast hits to 10498 proteins in 2700 species: Archae - 4; Bacteria - 7892; Metazoa - 1; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2521 (source: NCBI BLink). & (reliability: 432.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000405.48","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000411.31","No alias","Cyanophora paradoxa","(at2g02810 : 137.0) Encodes a multitransmembrane  hydrophobic protein that functions as transporter of UDP-galactose and UDP-glucose into the Golgi. Localized in the ER. Involved in the unfolded protein response, a mechanism that controls proper protein folding in the ER.; UDP-galactose transporter 1 (UTR1); CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: UDP-galactose transporter 3 (TAIR:AT1G14360.1); Has 1052 Blast hits to 1046 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 503; Fungi - 150; Plants - 232; Viruses - 0; Other Eukaryotes - 167 (source: NCBI BLink). & (reliability: 274.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000448.40","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000448.84","No alias","Cyanophora paradoxa","(at5g10050 : 82.8) NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G65205.1); Has 119739 Blast hits to 119523 proteins in 3734 species: Archae - 959; Bacteria - 78106; Metazoa - 7703; Fungi - 6506; Plants - 2887; Viruses - 2; Other Eukaryotes - 23576 (source: NCBI BLink). & (reliability: 165.6) &  (original description: no original description)","protein_coding"
"evm.model.tig00000459.23","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000478.23","No alias","Cyanophora paradoxa","(at1g06720 : 305.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: ribosome biogenesis; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AARP2CN (InterPro:IPR012948), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Protein of unknown function DUF663 (InterPro:IPR007034); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G42440.1); Has 8329 Blast hits to 5822 proteins in 470 species: Archae - 49; Bacteria - 737; Metazoa - 2493; Fungi - 1253; Plants - 549; Viruses - 77; Other Eukaryotes - 3171 (source: NCBI BLink). & (reliability: 610.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000480.46","No alias","Cyanophora paradoxa","(at3g45890 : 188.0) Encodes RUS1 (root UVB sensitive 1), a protein that contains DUF647 (domain of unknown function 647), a domain highly conserved in eukaryotes.  The primary root of rus1 is hypersensitive to very low-fluence-rate (VLF) UVB.; ROOT UVB SENSITIVE 1 (RUS1); INVOLVED IN: response to UV-B, developmental process; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: lateral root, root apical meristem, callus, elongation zone, embryonic root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT1G13770.1); Has 458 Blast hits to 456 proteins in 133 species: Archae - 0; Bacteria - 2; Metazoa - 116; Fungi - 71; Plants - 198; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink). & (reliability: 376.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000498.63","No alias","Cyanophora paradoxa","(q08480|kad2_orysa : 255.0) Adenylate kinase B (EC 2.7.4.3) (ATP-AMP transphosphorylase) - Oryza sativa (Rice) & (at5g63400 : 254.0) encodes a protein similar to adenylate kinase.; adenylate kinase 1 (ADK1); FUNCTIONS IN: copper ion binding, adenylate kinase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase, active site lid domain (InterPro:IPR007862), Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: Adenylate kinase family protein (TAIR:AT5G50370.1); Has 14853 Blast hits to 14693 proteins in 5114 species: Archae - 98; Bacteria - 9957; Metazoa - 1251; Fungi - 476; Plants - 450; Viruses - 0; Other Eukaryotes - 2621 (source: NCBI BLink). & (reliability: 508.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000498.90","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000581.33","No alias","Cyanophora paradoxa","(at1g23820 : 266.0) Spermidine synthase.; spermidine synthase 1 (SPDS1); FUNCTIONS IN: spermidine synthase activity; INVOLVED IN: spermidine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 2 (TAIR:AT1G70310.1); Has 5225 Blast hits to 5225 proteins in 1497 species: Archae - 169; Bacteria - 2879; Metazoa - 350; Fungi - 195; Plants - 413; Viruses - 0; Other Eukaryotes - 1219 (source: NCBI BLink). & (q9ztr1|spd1_pea : 256.0) Spermidine synthase 1 (EC 2.5.1.16) (Putrescine aminopropyltransferase 1) (SPDSY 1) - Pisum sativum (Garden pea) & (reliability: 532.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000615.43","No alias","Cyanophora paradoxa","(at2g40700 : 189.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G65900.1); Has 40440 Blast hits to 37904 proteins in 2977 species: Archae - 739; Bacteria - 19708; Metazoa - 6217; Fungi - 4486; Plants - 2481; Viruses - 5; Other Eukaryotes - 6804 (source: NCBI BLink). & (p46942|db10_nicsy : 112.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 378.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000640.22","No alias","Cyanophora paradoxa","(at2g17510 : 559.0) EMBRYO DEFECTIVE 2763 (EMB2763); FUNCTIONS IN: ribonuclease activity, RNA binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleotide binding protein, PINc (InterPro:IPR006596), Ribonuclease II/R (InterPro:IPR001900); BEST Arabidopsis thaliana protein match is: Ribonuclease II/R family protein (TAIR:AT1G77680.1). & (reliability: 1118.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000640.23","No alias","Cyanophora paradoxa","(at2g04845 : 174.0) Acyl-CoA N-acyltransferases (NAT) superfamily protein; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 393 Blast hits to 383 proteins in 188 species: Archae - 0; Bacteria - 98; Metazoa - 122; Fungi - 80; Plants - 36; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). & (reliability: 348.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000655.17","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000655.53","No alias","Cyanophora paradoxa","(at3g10660 : 229.0) predicted to encode calcium-dependent  protein kinase and is localized to the ER. Protein is myristoylated in a cell-free extract. Changing the proposed myristoylated site, G residue in the amino terminal,  to A prevented the meristoylation .  The G to A mutation decreased AtCPK2 membrane association by approximately 50%.; calmodulin-domain protein kinase cdpk isoform 2 (CPK2); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium dependent protein kinase 1 (TAIR:AT5G04870.1); Has 145304 Blast hits to 132515 proteins in 4265 species: Archae - 224; Bacteria - 17128; Metazoa - 53382; Fungi - 18632; Plants - 28672; Viruses - 609; Other Eukaryotes - 26657 (source: NCBI BLink). & (p53683|cdpk2_orysa : 225.0) Calcium-dependent protein kinase, isoform 2 (EC 2.7.11.1) (CDPK 2) - Oryza sativa (Rice) & (reliability: 458.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000711.70","No alias","Cyanophora paradoxa","(at4g34740 : 481.0) Encodes glutamine 5-phosphoribosylpyrophosphate amidotransferase. Mutants are deficient in leaf, but not cotyledon, plastid and palisade cell development. Mutants exhibit defective chloroplast development under non-low light, suggesting that the defect in chloroplast development is caused by photo-oxidative damage.; GLN phosphoribosyl pyrophosphate amidotransferase 2 (ASE2); FUNCTIONS IN: amidophosphoribosyltransferase activity; INVOLVED IN: purine base biosynthetic process, purine nucleotide biosynthetic process, leaf morphogenesis; LOCATED IN: plastid stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Phosphoribosyltransferase (InterPro:IPR000836), Amidophosphoribosyl transferase (InterPro:IPR005854), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: GLN phosphoribosyl pyrophosphate amidotransferase 1 (TAIR:AT2G16570.1); Has 21535 Blast hits to 21523 proteins in 2920 species: Archae - 630; Bacteria - 12403; Metazoa - 419; Fungi - 318; Plants - 251; Viruses - 17; Other Eukaryotes - 7497 (source: NCBI BLink). & (p52418|pur1_soybn : 478.0) Amidophosphoribosyltransferase, chloroplast precursor (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPAT) - Glycine max (Soybean) & (reliability: 962.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000769.2","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000792.66","No alias","Cyanophora paradoxa","(q9xg98|kprs1_spiol : 177.0) Ribose-phosphate pyrophosphokinase 1 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 1) - Spinacia oleracea (Spinach) & (at2g44530 : 173.0) Phosphoribosyltransferase family protein; FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: phosphoribosyl pyrophosphate (PRPP) synthase 2 (TAIR:AT1G32380.1); Has 11359 Blast hits to 11120 proteins in 2784 species: Archae - 259; Bacteria - 6102; Metazoa - 636; Fungi - 683; Plants - 217; Viruses - 13; Other Eukaryotes - 3449 (source: NCBI BLink). & (reliability: 346.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000802.56","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000863.2","No alias","Cyanophora paradoxa","(at3g54280 : 205.0) ROOT GROWTH DEFECTIVE 3 (RGD3); FUNCTIONS IN: helicase activity, binding, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), DEAD-like helicase, N-terminal (InterPro:IPR014001), Armadillo-type fold (InterPro:IPR016024), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1). & (q7g8y3|isw2_orysa : 181.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 410.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000900.33","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000912.48","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000949.11","No alias","Cyanophora paradoxa","(at5g53920 : 91.3) ribosomal protein L11 methyltransferase-related; FUNCTIONS IN: protein methyltransferase activity; INVOLVED IN: protein amino acid methylation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Ribosomal protein L11 methyltransferase (InterPro:IPR004498), Ribosomal L11 methyltransferase, PrmA (InterPro:IPR010456); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 182.6) &  (original description: no original description)","protein_coding"
"evm.model.tig00000989.39","No alias","Cyanophora paradoxa","(at5g22100 : 298.0) RNA cyclase family protein; FUNCTIONS IN: RNA-3'-phosphate cyclase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA 3'-terminal phosphate cyclase-like, conserved site (InterPro:IPR020719), RNA 3'-terminal phosphate cyclase-like (InterPro:IPR000228), RNA 3'-terminal phosphate cyclase, insert domain (InterPro:IPR013796), RNA 3'-terminal phosphate cyclase-like, eukaryotic (InterPro:IPR016443), RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (InterPro:IPR013792); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 596.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001027.29","No alias","Cyanophora paradoxa","(at4g15850 : 89.4) plant DEAD box-like RNA helicase.; RNA helicase 1 (RH1); CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT4G16630.1); Has 38711 Blast hits to 38056 proteins in 2969 species: Archae - 603; Bacteria - 19125; Metazoa - 5736; Fungi - 4393; Plants - 2535; Viruses - 13; Other Eukaryotes - 6306 (source: NCBI BLink). & (reliability: 178.8) &  (original description: no original description)","protein_coding"
"evm.model.tig00001030.15","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001038.5","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001041.22","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001049.3","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001052.10","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001086.14","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001086.16","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001187.11","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001249.1","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001250.10","No alias","Cyanophora paradoxa","(at4g36850 : 87.0) PQ-loop repeat family protein / transmembrane family protein; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603); BEST Arabidopsis thaliana protein match is: PQ-loop repeat family protein / transmembrane family protein (TAIR:AT2G41050.1); Has 883 Blast hits to 635 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 204; Fungi - 499; Plants - 92; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink). & (reliability: 174.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001333.18","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001545.8","No alias","Cyanophora paradoxa","(at4g07950 : 90.9) DNA-directed RNA polymerase, subunit M, archaeal; FUNCTIONS IN: in 6 functions; INVOLVED IN: RNA elongation, regulation of transcription, DNA-dependent, transcription, regulation of transcription; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: male gametophyte; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), DNA-directed RNA polymerase, M/15kDa subunit (InterPro:IPR001529), DNA-directed RNA polymerase, subunit M, archaeal (InterPro:IPR006288), DNA-directed RNA polymerase M, 15kDa subunit, conserved site (InterPro:IPR019761); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase, subunit M, archaeal (TAIR:AT1G01210.1); Has 1132 Blast hits to 1132 proteins in 328 species: Archae - 242; Bacteria - 0; Metazoa - 282; Fungi - 291; Plants - 114; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink). & (reliability: 181.8) &  (original description: no original description)","protein_coding"
"evm.model.tig00020537.71","No alias","Cyanophora paradoxa","(at3g04680 : 250.0) Encodes a nuclear protein that functions in mRNA processing. Mutations in this gene cause embryo lethality and reduced transmission through the female gametophyte. Over-expression of a CLPS3:TAP protein changes the relative levels of two alternatively processed FCA transcripts. It also causes abnormal phyllotaxy and flower development, early flowering under long and short days, and increased levels of CUC1 and WUS expression.; CLP-similar protein 3 (CLPS3); CONTAINS InterPro DOMAIN/s: Pre-mRNA cleavage complex II Clp1 (InterPro:IPR010655); BEST Arabidopsis thaliana protein match is: CLP1-similar protein 5 (TAIR:AT5G39930.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 500.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020553.140","No alias","Cyanophora paradoxa","(p37833|aatc_orysa : 405.0) Aspartate aminotransferase, cytoplasmic (EC 2.6.1.1) (Transaminase A) - Oryza sativa (Rice) & (at5g19550 : 390.0) Nitrogen metabolism. Major cytosolic isoenzyme controlling aspartate biosynthesis in the light.; aspartate aminotransferase 2 (ASP2); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity, copper ion binding; INVOLVED IN: nitrogen compound metabolic process; LOCATED IN: cytosol, cell wall, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase 3 (TAIR:AT5G11520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 780.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020554.124","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020554.25","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020554.59","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020556.30","No alias","Cyanophora paradoxa","(at2g19870 : 187.0) tRNA/rRNA methyltransferase (SpoU) family protein; FUNCTIONS IN: methyltransferase activity, RNA binding, RNA methyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: tRNA/rRNA methyltransferase, SpoU (InterPro:IPR001537), RNA methyltransferase TrmH, group 3 (InterPro:IPR004441), RNA 2-O ribose methyltransferase, substrate binding (InterPro:IPR013123); Has 11661 Blast hits to 11576 proteins in 2636 species: Archae - 7; Bacteria - 7686; Metazoa - 749; Fungi - 216; Plants - 206; Viruses - 3; Other Eukaryotes - 2794 (source: NCBI BLink). & (reliability: 374.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020557.9","No alias","Cyanophora paradoxa","(at3g57000 : 194.0) nucleolar essential protein-related; CONTAINS InterPro DOMAIN/s: Ribosomal biogenesis, methyltransferase,  EMG1/NEP1 (InterPro:IPR005304); Has 1079 Blast hits to 938 proteins in 280 species: Archae - 143; Bacteria - 12; Metazoa - 353; Fungi - 181; Plants - 69; Viruses - 2; Other Eukaryotes - 319 (source: NCBI BLink). & (reliability: 388.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020560.13","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020563.183","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020563.26","No alias","Cyanophora paradoxa","(at5g01470 : 134.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase-16, putative (InterPro:IPR019410); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 268.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020572.51","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020610.33","No alias","Cyanophora paradoxa","(at1g65930 : 579.0) Encodes a NADP+-isocitrate dehydrogenase that is believed to function in the cytosol. It appears to contribute to NADPH production under oxidative stress, and thereby to participate in redox signalling linked to defense responses.; cytosolic NADP+-dependent isocitrate dehydrogenase (cICDH); FUNCTIONS IN: isocitrate dehydrogenase (NADP+) activity, copper ion binding; INVOLVED IN: in 7 processes; LOCATED IN: cytosol, apoplast, plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate dehydrogenase NADP-dependent, eukaryotic (InterPro:IPR004790), Isocitrate/isopropylmalate dehydrogenase, conserved site (InterPro:IPR019818); BEST Arabidopsis thaliana protein match is: isocitrate dehydrogenase (TAIR:AT1G54340.1); Has 5437 Blast hits to 5413 proteins in 1130 species: Archae - 48; Bacteria - 1243; Metazoa - 817; Fungi - 231; Plants - 475; Viruses - 0; Other Eukaryotes - 2623 (source: NCBI BLink). & (q06197|idhc_soybn : 575.0) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) - Glycine max (Soybean) & (reliability: 1158.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020610.71","No alias","Cyanophora paradoxa","(at2g18220 : 250.0) Noc2p family; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0120 (InterPro:IPR005343); BEST Arabidopsis thaliana protein match is: Noc2p family (TAIR:AT3G55510.1); Has 4709 Blast hits to 3397 proteins in 331 species: Archae - 4; Bacteria - 179; Metazoa - 1693; Fungi - 681; Plants - 249; Viruses - 70; Other Eukaryotes - 1833 (source: NCBI BLink). & (q8lnu5|noc2l_orysa : 197.0) Nucleolar complex protein 2 homolog (Protein NOC2 homolog) - Oryza sativa (Rice) & (reliability: 500.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020614.55","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020685.18","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020780.16","No alias","Cyanophora paradoxa","(at5g18570 : 208.0) Encodes AtObgC, a plant ortholog of bacterial Obg.  AtObgC is a chloroplast-targeting GTPase essential for early embryogenesis. Mutations in this locus result in embryo lethality. The protein is  dually localized in the stroma and the inner envelope membrane and is involved in thylakoid membrane biogenesis.; EMBRYO DEFECTIVE 269 (EMB269); FUNCTIONS IN: GTPase activity; INVOLVED IN: response to light stimulus, thylakoid membrane organization, embryo development, embryo development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast stroma, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG subdomain (InterPro:IPR006169), GTP-binding protein GTP1/OBG, C-terminal (InterPro:IPR015349), GTP1/OBG (InterPro:IPR006073), GTP1/OBG, conserved site (InterPro:IPR006074), GTP-binding protein, HSR1-related (InterPro:IPR002917), GTP-binding protein Obg/CgtA (InterPro:IPR014100); BEST Arabidopsis thaliana protein match is: GTP-binding protein Obg/CgtA (TAIR:AT1G07615.1); Has 23458 Blast hits to 23162 proteins in 3000 species: Archae - 644; Bacteria - 14053; Metazoa - 1121; Fungi - 826; Plants - 464; Viruses - 52; Other Eukaryotes - 6298 (source: NCBI BLink). & (reliability: 416.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020780.28","No alias","Cyanophora paradoxa","(at3g12080 : 327.0) embryo defective 2738 (emb2738); FUNCTIONS IN: GTP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), GTP-binding, EngA (InterPro:IPR016484), GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: GTP binding;GTP binding (TAIR:AT5G39960.1); Has 46500 Blast hits to 25681 proteins in 2968 species: Archae - 249; Bacteria - 36237; Metazoa - 387; Fungi - 432; Plants - 421; Viruses - 0; Other Eukaryotes - 8774 (source: NCBI BLink). & (reliability: 654.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020927.41","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020943.44","No alias","Cyanophora paradoxa","(at3g04820 : 189.0) Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, TruD (InterPro:IPR001656), Pseudouridine synthase TruD, eukaryotic (InterPro:IPR017091), Pseudouridine synthase, TruD, insertion domain (InterPro:IPR011760); Has 2276 Blast hits to 2198 proteins in 933 species: Archae - 260; Bacteria - 1262; Metazoa - 203; Fungi - 153; Plants - 61; Viruses - 0; Other Eukaryotes - 337 (source: NCBI BLink). & (reliability: 378.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020965.4","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021017.20","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021036.54","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021254.43","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021339.32","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021352.33","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021441.8","No alias","Cyanophora paradoxa","(o48905|mdhc_medsa : 294.0) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) - Medicago sativa (Alfalfa) & (at1g04410 : 290.0) Lactate/malate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to cadmium ion, response to zinc ion, response to salt stress; LOCATED IN: in 7 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, cytosolic (InterPro:IPR011274), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, NAD/NADP (InterPro:IPR010945), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT5G43330.1); Has 11998 Blast hits to 11997 proteins in 3022 species: Archae - 169; Bacteria - 7171; Metazoa - 1456; Fungi - 287; Plants - 683; Viruses - 0; Other Eukaryotes - 2232 (source: NCBI BLink). & (reliability: 580.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021517.11","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021531.15","No alias","Cyanophora paradoxa","(at5g14600 : 182.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: tRNA (adenine-N1-)-methyltransferase activity; INVOLVED IN: tRNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: tRNA methyltransferase complex GCD14 subunit (InterPro:IPR014816); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 364.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021537.66","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021680.4","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021719.24","No alias","Cyanophora paradoxa","(at3g10940 : 93.6) dual specificity protein phosphatase (DsPTP1) family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, dephosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: dual specificity protein phosphatase (DsPTP1) family protein (TAIR:AT3G52180.2); Has 897 Blast hits to 897 proteins in 122 species: Archae - 6; Bacteria - 12; Metazoa - 607; Fungi - 18; Plants - 142; Viruses - 11; Other Eukaryotes - 101 (source: NCBI BLink). & (reliability: 187.2) &  (original description: no original description)","protein_coding"
"evm.model.tig00021721.10","No alias","Cyanophora paradoxa","(at1g02305 : 103.0) Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02300.1); Has 7484 Blast hits to 7435 proteins in 695 species: Archae - 51; Bacteria - 161; Metazoa - 3268; Fungi - 4; Plants - 1732; Viruses - 146; Other Eukaryotes - 2122 (source: NCBI BLink). & (reliability: 206.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00022080.3","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"Glyma.01G003800","No alias","Glycine max","arginine methyltransferase 11","protein_coding"
"Glyma.01G069500","No alias","Glycine max","TCP-1/cpn60 chaperonin family protein","protein_coding"
"Glyma.01G147400","No alias","Glycine max","RNA-binding CRS1 / YhbY (CRM) domain-containing protein","protein_coding"
"Glyma.01G163800","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.01G206500","No alias","Glycine max","receptor-like protein kinase 1","protein_coding"
"Glyma.01G236600","No alias","Glycine max","Ribosomal protein S3Ae","protein_coding"
"Glyma.01G241600","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.02G043900","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.03G070100","No alias","Glycine max","NAD(P)-linked oxidoreductase superfamily protein","protein_coding"
"Glyma.03G074800","No alias","Glycine max","fructokinase-like 1","protein_coding"
"Glyma.03G120900","No alias","Glycine max","Nascent polypeptide-associated complex (NAC), alpha subunit family protein","protein_coding"
"Glyma.03G150600","No alias","Glycine max","GTP binding Elongation factor Tu family protein","protein_coding"
"Glyma.03G251600","No alias","Glycine max","rotamase cyclophilin 2","protein_coding"
"Glyma.04G062100","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.04G124900","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.04G170400","No alias","Glycine max","NAP1-related protein 2","protein_coding"
"Glyma.04G178400","No alias","Glycine max","ADP-glucose pyrophosphorylase family protein","protein_coding"
"Glyma.04G231500","No alias","Glycine max","Ubiquitin supergroup;Ribosomal protein L40e","protein_coding"
"Glyma.04G235800","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.04G248500","No alias","Glycine max","aldehyde dehydrogenase 3H1","protein_coding"
"Glyma.04G249600","No alias","Glycine max","Plant protein of unknown function (DUF869)","protein_coding"
"Glyma.04G255300","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.05G016600","No alias","Glycine max","Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein","protein_coding"
"Glyma.05G055100","No alias","Glycine max","Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein","protein_coding"
"Glyma.05G067100","No alias","Glycine max","casein kinase II  beta chain 1","protein_coding"
"Glyma.05G115200","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.05G201500","No alias","Glycine max","Polynucleotide adenylyltransferase family protein","protein_coding"
"Glyma.05G208400","No alias","Glycine max","GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative","protein_coding"
"Glyma.05G239400","No alias","Glycine max","flavin-binding, kelch repeat, f box 1","protein_coding"
"Glyma.05G248200","No alias","Glycine max","homeobox protein 33","protein_coding"
"Glyma.06G009100","No alias","Glycine max","salt tolerance homolog2","protein_coding"
"Glyma.06G128900","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.06G193200","No alias","Glycine max","NAP1-related protein 2","protein_coding"
"Glyma.06G323000","No alias","Glycine max","Ribosomal L5P family protein","protein_coding"
"Glyma.07G017800","No alias","Glycine max","Basic-leucine zipper (bZIP) transcription factor family protein","protein_coding"
"Glyma.07G033100","No alias","Glycine max","nucleotide transporter 1","protein_coding"
"Glyma.07G073500","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.07G100500","No alias","Glycine max","B-S glucosidase 44","protein_coding"
"Glyma.07G124600","No alias","Glycine max","MATE efflux family protein","protein_coding"
"Glyma.07G128100","No alias","Glycine max","arginine methyltransferase 11","protein_coding"
"Glyma.07G250900","No alias","Glycine max","CHY-type/CTCHY-type/RING-type Zinc finger protein","protein_coding"
"Glyma.07G260400","No alias","Glycine max","Met-10+ like family protein / kelch repeat-containing protein","protein_coding"
"Glyma.08G015000","No alias","Glycine max","GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative","protein_coding"
"Glyma.08G028000","No alias","Glycine max","Homeodomain-like transcriptional regulator","protein_coding"
"Glyma.08G042300","No alias","Glycine max","Ribosomal protein S19 family protein","protein_coding"
"Glyma.08G061500","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.08G067600","No alias","Glycine max","nicotinamidase 1","protein_coding"
"Glyma.08G086500","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.08G098100","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.08G162000","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.08G197100","No alias","Glycine max","peptidase M20/M25/M40 family protein","protein_coding"
"Glyma.08G209100","No alias","Glycine max","nucleotide transporter 1","protein_coding"
"Glyma.08G255500","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.08G366200","No alias","Glycine max","RNA-binding (RRM/RBD/RNP motifs) family protein","protein_coding"
"Glyma.09G043600","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.09G065900","No alias","Glycine max","matrix metalloproteinase","protein_coding"
"Glyma.09G104000","No alias","Glycine max","RNA binding;RNA binding","protein_coding"
"Glyma.09G113800","No alias","Glycine max","squamosa promoter binding protein-like 9","protein_coding"
"Glyma.09G177100","No alias","Glycine max","zinc finger (Ran-binding) family protein","protein_coding"
"Glyma.10G003200","No alias","Glycine max","chlorophyllase 2","protein_coding"
"Glyma.10G122200","No alias","Glycine max","GTP-binding family protein","protein_coding"
"Glyma.10G155000","No alias","Glycine max","seryl-tRNA synthetase / serine--tRNA ligase","protein_coding"
"Glyma.10G261400","No alias","Glycine max","D-3-phosphoglycerate dehydrogenase","protein_coding"
"Glyma.11G034700","No alias","Glycine max","Ribosomal protein L23/L15e family protein","protein_coding"
"Glyma.11G050000","No alias","Glycine max","casein kinase alpha 1","protein_coding"
"Glyma.11G053700","No alias","Glycine max","Cystathionine beta-synthase (CBS) family protein","protein_coding"
"Glyma.11G080600","No alias","Glycine max","aconitase 1","protein_coding"
"Glyma.11G087500","No alias","Glycine max","Seven transmembrane MLO family protein","protein_coding"
"Glyma.11G091700","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.11G136400","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.11G171300","No alias","Glycine max","Plant protein of unknown function (DUF828)","protein_coding"
"Glyma.11G244700","No alias","Glycine max","TCP-1/cpn60 chaperonin family protein","protein_coding"
"Glyma.12G024700","No alias","Glycine max","rotamase CYP 3","protein_coding"
"Glyma.12G026000","No alias","Glycine max","Metal-dependent phosphohydrolase","protein_coding"
"Glyma.12G084700","No alias","Glycine max","histone deacetylase 2C","protein_coding"
"Glyma.12G207500","No alias","Glycine max","prohibitin 2","protein_coding"
"Glyma.12G225000","No alias","Glycine max","ribosomal protein L3 plastid","protein_coding"
"Glyma.13G122300","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.13G133400","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.13G163302","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.13G255400","No alias","Glycine max","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"Glyma.13G281300","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.13G313200","No alias","Glycine max","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"Glyma.14G024600","No alias","Glycine max","ARM repeat superfamily protein","protein_coding"
"Glyma.14G043400","No alias","Glycine max","TCP-1/cpn60 chaperonin family protein","protein_coding"
"Glyma.14G197900","No alias","Glycine max","CCT motif family protein","protein_coding"
"Glyma.15G129100","No alias","Glycine max","Transducin/WD40 repeat-like superfamily protein","protein_coding"
"Glyma.15G165300","No alias","Glycine max","DNA binding;DNA-directed RNA polymerases","protein_coding"
"Glyma.15G178400","No alias","Glycine max","aldehyde dehydrogenase 7B4","protein_coding"
"Glyma.15G193000","No alias","Glycine max","periodic tryptophan protein 2","protein_coding"
"Glyma.15G265600","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.16G004300","No alias","Glycine max","TCP family transcription factor","protein_coding"
"Glyma.16G012100","No alias","Glycine max","CCAAT-binding factor","protein_coding"
"Glyma.16G049000","No alias","Glycine max","CCR-like","protein_coding"
"Glyma.16G214800","No alias","Glycine max","Disease resistance protein (TIR-NBS-LRR class) family","protein_coding"
"Glyma.17G006500","No alias","Glycine max","pentatricopeptide (PPR) repeat-containing protein","protein_coding"
"Glyma.17G049800","No alias","Glycine max","germin 3","protein_coding"
"Glyma.17G071600","No alias","Glycine max","DNA/RNA polymerases superfamily protein","protein_coding"
"Glyma.17G083200","No alias","Glycine max","Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein","protein_coding"
"Glyma.17G083500","No alias","Glycine max","Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein","protein_coding"
"Glyma.17G088200","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.17G115400","No alias","Glycine max","Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein","protein_coding"
"Glyma.17G127700","No alias","Glycine max","Putative endonuclease or glycosyl hydrolase","protein_coding"
"Glyma.17G233600","No alias","Glycine max","ARM repeat superfamily protein","protein_coding"
"Glyma.17G251300","No alias","Glycine max","pentatricopeptide (PPR) repeat-containing protein","protein_coding"
"Glyma.17G251800","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.17G255300","No alias","Glycine max","Chaperone DnaJ-domain superfamily protein","protein_coding"
"Glyma.18G012400","No alias","Glycine max","TCP-1/cpn60 chaperonin family protein","protein_coding"
"Glyma.18G065700","No alias","Glycine max","thiaminC","protein_coding"
"Glyma.18G140500","No alias","Glycine max","Plant protein 1589 of unknown function","protein_coding"
"Glyma.18G157300","No alias","Glycine max","Ribosomal protein S8e family protein","protein_coding"
"Glyma.18G188800","No alias","Glycine max","Protein of unknown function (DUF3411)","protein_coding"
"Glyma.18G276200","No alias","Glycine max","DNA/RNA polymerases superfamily protein","protein_coding"
"Glyma.18G286400","No alias","Glycine max","ribosomal protein L23AB","protein_coding"
"Glyma.19G052100","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"Glyma.19G129900","No alias","Glycine max","PENTATRICOPEPTIDE REPEAT 596","protein_coding"
"Glyma.19G173200","No alias","Glycine max","RNA-binding (RRM/RBD/RNP motifs) family protein","protein_coding"
"Glyma.19G195500","No alias","Glycine max","Ubiquitin supergroup;Ribosomal protein L40e","protein_coding"
"Glyma.19G202600","No alias","Glycine max","Function unknown","protein_coding"
"Glyma.20G015400","No alias","Glycine max","serine carboxypeptidase-like 50","protein_coding"
"Glyma.20G098800","No alias","Glycine max","phragmoplastin interacting protein 1","protein_coding"
"Glyma.20G126800","No alias","Glycine max","Cyclase family protein","protein_coding"
"Glyma.20G129400","No alias","Glycine max","D-3-phosphoglycerate dehydrogenase","protein_coding"
"Glyma.20G152600","No alias","Glycine max","subtilase 1.3","protein_coding"
"GRMZM2G014043","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM2G064331","No alias","Zea mays","GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative","protein_coding"
"GRMZM2G127416","No alias","Zea mays","exostosin family protein","protein_coding"
"GRMZM2G136283","No alias","Zea mays","GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative","protein_coding"
"GRMZM2G145480","No alias","Zea mays","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding"
"GRMZM2G155323","No alias","Zea mays","L-O-methylthreonine resistant 1","protein_coding"
"GRMZM2G177845","No alias","Zea mays","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding"
"GRMZM2G178254","No alias","Zea mays","ADP-glucose pyrophosphorylase family protein","protein_coding"
"GRMZM2G547168","No alias","Zea mays","Function unknown","protein_coding"
"GRMZM5G869779","No alias","Zea mays","DHFS-FPGS homolog B","protein_coding"
"HORVU0Hr1G005920.1","No alias","Hordeum vulgare","plastidial splicing factor *(PDM4)","protein_coding"
"HORVU0Hr1G021200.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G019340.6","No alias","Hordeum vulgare","component *(XPD) of TFIIh basal transcription factor complex & component *(XPD) of multifunctional TFIIh complex","protein_coding"
"HORVU1Hr1G022570.1","No alias","Hordeum vulgare","component *(eL18) of large ribosomal-subunit (LSU) proteome","protein_coding"
"HORVU1Hr1G024060.3","No alias","Hordeum vulgare","RNA splicing factor *(RSZ32/33)","protein_coding"
"HORVU1Hr1G067000.1","No alias","Hordeum vulgare","protease *(Deg)","protein_coding"
"HORVU1Hr1G095060.2","No alias","Hordeum vulgare","component *(LSm8) of U6-associated LSm accessory ribonucleoprotein complex","protein_coding"
"HORVU2Hr1G009780.3","No alias","Hordeum vulgare","manganese/calcium cation transporter *(BICAT)","protein_coding"
"HORVU2Hr1G011200.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G022250.4","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G031890.2","No alias","Hordeum vulgare","component *(Sm-G) of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex","protein_coding"
"HORVU2Hr1G052650.1","No alias","Hordeum vulgare","component *(eL15) of large ribosomal-subunit (LSU) proteome","protein_coding"
"HORVU2Hr1G056360.4","No alias","Hordeum vulgare","protein-S-nitrosothiol reductase *(TRX5) & H-type thioredoxin *(Trx-H)","protein_coding"
"HORVU2Hr1G063880.1","No alias","Hordeum vulgare","component *(uL13) of large ribosomal-subunit (LSU) proteome","protein_coding"
"HORVU2Hr1G066830.1","No alias","Hordeum vulgare","component *(bL27m) of large mitoribosomal-subunit proteome","protein_coding"
"HORVU2Hr1G068200.3","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G086360.3","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G087970.4","No alias","Hordeum vulgare","EC_1.1 oxidoreductase acting on CH-OH group of donor","protein_coding"
"HORVU2Hr1G104570.6","No alias","Hordeum vulgare","SETD-type lysine N-methyltransferase","protein_coding"
"HORVU2Hr1G107520.1","No alias","Hordeum vulgare","methylmalonate-semialdehyde dehydrogenase *(MMSD) & EC_1.2 oxidoreductase acting on aldehyde or oxo group of donor","protein_coding"
"HORVU2Hr1G127090.4","No alias","Hordeum vulgare","cofactor of post-CCT Tubulin folding pathway *(TFC-B)","protein_coding"
"HORVU3Hr1G036720.5","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G044530.1","No alias","Hordeum vulgare","proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU3Hr1G075310.6","No alias","Hordeum vulgare","EC_3.2 glycosylase","protein_coding"
"HORVU3Hr1G086930.1","No alias","Hordeum vulgare","component *(uS8) of small ribosomal-subunit (SSU) proteome","protein_coding"
"HORVU4Hr1G013610.2","No alias","Hordeum vulgare","ssDNA-binding protein *(OSB)","protein_coding"
"HORVU4Hr1G020130.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G049670.2","No alias","Hordeum vulgare","component *(eL19) of large ribosomal-subunit (LSU) proteome","protein_coding"
"HORVU4Hr1G050630.4","No alias","Hordeum vulgare","component *(eIF2-beta) of eIF2 Met-tRNA binding factor complex","protein_coding"
"HORVU4Hr1G052790.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G058050.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G069280.4","No alias","Hordeum vulgare","1,2-alpha-fucosidase *(AXY8)","protein_coding"
"HORVU4Hr1G070410.2","No alias","Hordeum vulgare","small GTPase *(ARL8)","protein_coding"
"HORVU4Hr1G083840.1","No alias","Hordeum vulgare","component *(uL14) of large ribosomal-subunit (LSU) proteome","protein_coding"
"HORVU5Hr1G013240.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G013250.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G038920.1","No alias","Hordeum vulgare","component *(uS4) of small ribosomal-subunit (SSU) proteome","protein_coding"
"HORVU5Hr1G048830.1","No alias","Hordeum vulgare","component *(eL15) of large ribosomal-subunit (LSU) proteome","protein_coding"
"HORVU5Hr1G075420.2","No alias","Hordeum vulgare","component *(eL32) of large ribosomal-subunit (LSU) proteome","protein_coding"
"HORVU5Hr1G081590.1","No alias","Hordeum vulgare","component *(eL42) of large ribosomal-subunit (LSU) proteome","protein_coding"
"HORVU5Hr1G088030.1","No alias","Hordeum vulgare","component *(ARP4) shared with NuA4/SWR1 complexes & component *(ARP4) of SWR1 chromatin remodeling complex","protein_coding"
"HORVU5Hr1G095960.3","No alias","Hordeum vulgare","component *(CstF50) of Cleavage Stimulatory Factor (CstF) complex","protein_coding"
"HORVU5Hr1G098740.1","No alias","Hordeum vulgare","component *(uS14) of small ribosomal-subunit (SSU) proteome","protein_coding"
"HORVU5Hr1G106460.1","No alias","Hordeum vulgare","mevalonate diphosphate decarboxylase & EC_4.1 carbon-carbon lyase","protein_coding"
"HORVU6Hr1G009430.2","No alias","Hordeum vulgare","GMP synthetase *(GMPS) & EC_6.3 ligase forming carbon-nitrogen bond","protein_coding"
"HORVU6Hr1G053640.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G054100.2","No alias","Hordeum vulgare","regulatory component *(RPN7) of 26S proteasome","protein_coding"
"HORVU6Hr1G071950.13","No alias","Hordeum vulgare","BBX class-II transcription factor","protein_coding"
"HORVU6Hr1G077440.3","No alias","Hordeum vulgare","regulatory factor *(CURT) of thylakoid grana stacking","protein_coding"
"HORVU6Hr1G083120.2","No alias","Hordeum vulgare","component *(eL33) of large ribosomal-subunit (LSU) proteome","protein_coding"
"HORVU7Hr1G021800.1","No alias","Hordeum vulgare","histone chaperone *(NAP)","protein_coding"
"HORVU7Hr1G024890.1","No alias","Hordeum vulgare","RNA endonuclease *(FCF1)","protein_coding"
"HORVU7Hr1G026020.3","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G035030.2","No alias","Hordeum vulgare","EC_2.7 transferase transferring phosphorus-containing group & pantothenate kinase","protein_coding"
"HORVU7Hr1G096430.3","No alias","Hordeum vulgare","GARP subgroup PHL transcription factor","protein_coding"
"HORVU7Hr1G104300.1","No alias","Hordeum vulgare","component *(eL42) of large ribosomal-subunit (LSU) proteome","protein_coding"
"HORVU7Hr1G112740.4","No alias","Hordeum vulgare","component *(eS27) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Kfl00004_0160","kfl00004_0160_v1.1","Klebsormidium nitens","(at3g54650 : 149.0) FBL17; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: generative cell mitosis, seed development, embryo development, ubiquitin-dependent protein catabolic process, pollen development; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); Has 1738 Blast hits to 1195 proteins in 149 species: Archae - 0; Bacteria - 27; Metazoa - 733; Fungi - 89; Plants - 663; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink). & (reliability: 298.0) &  (original description: no original description)","protein_coding"
"Kfl00009_0470","kfl00009_0470_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00016_0030","kfl00016_0030_v1.1","Klebsormidium nitens","(at3g25690 : 345.0) actin binding protein required for normal chloroplast positioning; CHLOROPLAST UNUSUAL POSITIONING 1 (CHUP1); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G18570.1). & (reliability: 690.0) &  (original description: no original description)","protein_coding"
"Kfl00022_0250","kfl00022_0250_v1.1","Klebsormidium nitens","(at1g21690 : 472.0) embryo defective 1968 (EMB1968); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), Replication factor C (InterPro:IPR013748); BEST Arabidopsis thaliana protein match is: replication factor C 2 (TAIR:AT1G63160.1). & (reliability: 944.0) &  (original description: no original description)","protein_coding"
"Kfl00024_0500","kfl00024_0500_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00025_0370","kfl00025_0370_v1.1","Klebsormidium nitens","(at2g06210 : 769.0) Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit.  Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin.  Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.; EARLY FLOWERING 8 (ELF8); FUNCTIONS IN: binding; INVOLVED IN: positive regulation of transcription, DNA-dependent, histone methylation, negative regulation of flower development; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G04240.1); Has 39956 Blast hits to 25035 proteins in 1980 species: Archae - 1189; Bacteria - 13149; Metazoa - 9789; Fungi - 2497; Plants - 1315; Viruses - 192; Other Eukaryotes - 11825 (source: NCBI BLink). & (reliability: 1538.0) &  (original description: no original description)","protein_coding"
"Kfl00028_0260","kfl00028_0260_v1.1","Klebsormidium nitens","(at2g44580 : 266.0) zinc ion binding; CONTAINS InterPro DOMAIN/s: Sister chromatid cohesion protein DCC1 (InterPro:IPR019128); Has 214 Blast hits to 211 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 49; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 532.0) &  (original description: no original description)","protein_coding"
"Kfl00029_0270","kfl00029_0270_v1.1","Klebsormidium nitens","(at5g44635 : 779.0) MINICHROMOSOME MAINTENANCE 6 (MCM6); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: shoot apex; EXPRESSED DURING: IL.00 inflorescence just visible; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 6 (InterPro:IPR008049); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q43704|mcm3_maize : 281.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1558.0) &  (original description: no original description)","protein_coding"
"Kfl00030_0270","kfl00030_0270_v1.1","Klebsormidium nitens","(at5g66750 : 640.0) Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1  shows some resistance to agrobacterium-mediated root transformation.; chromatin remodeling 1 (CHR1); FUNCTIONS IN: helicase activity, ATPase activity; INVOLVED IN: methylation-dependent chromatin silencing, DNA mediated transformation, transposition, RNA-mediated; LOCATED IN: nucleosome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 439.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1280.0) &  (original description: no original description)","protein_coding"
"Kfl00031_0280","kfl00031_0280_v1.1","Klebsormidium nitens","(at5g26680 : 491.0) 5'-3' exonuclease family protein; FUNCTIONS IN: 5'-3' exonuclease activity, DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974), XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, N-terminal (InterPro:IPR002421), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G29630.2); Has 3563 Blast hits to 3243 proteins in 839 species: Archae - 284; Bacteria - 855; Metazoa - 643; Fungi - 727; Plants - 266; Viruses - 42; Other Eukaryotes - 746 (source: NCBI BLink). & (q9sxq6|fen1a_orysa : 477.0) Flap endonuclease 1a (EC 3.1.-.-) (OsFEN-1a) - Oryza sativa (Rice) & (reliability: 982.0) &  (original description: no original description)","protein_coding"
"Kfl00031_0500","kfl00031_0500_v1.1","Klebsormidium nitens","(at5g41790 : 99.4) encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light.; COP1-interactive protein 1 (CIP1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of protein import into nucleus; LOCATED IN: cytoskeleton, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G64330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 198.8) &  (original description: no original description)","protein_coding"
"Kfl00033_0310","kfl00033_0310_v1.1","Klebsormidium nitens","(at2g16440 : 825.0) MINICHROMOSOME MAINTENANCE 4 (MCM4); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 4 (InterPro:IPR008047); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT5G44635.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q43704|mcm3_maize : 290.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1650.0) &  (original description: no original description)","protein_coding"
"Kfl00038_0280","kfl00038_0280_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00040_0160","kfl00040_0160_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00041_0010","kfl00041_0010_v1.1","Klebsormidium nitens","(at1g65900 : 196.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 306 Blast hits to 306 proteins in 119 species: Archae - 19; Bacteria - 238; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). & (reliability: 392.0) &  (original description: no original description)","protein_coding"
"Kfl00043_0150","kfl00043_0150_v1.1","Klebsormidium nitens","(at4g34570 : 494.0) Encodes a bifunctional dihydrofolate reductase - thymidylate synthase gene. This is unique in Arabidopsis and protozoa. Other organisms have independent genes for this function.; thymidylate synthase 2 (THY-2); CONTAINS InterPro DOMAIN/s: Thymidylate synthase, active site (InterPro:IPR020940), Dihydrofolate reductase domain (InterPro:IPR001796), Dihydrofolate reductase conserved site (InterPro:IPR017925), Bifunctional dihydrofolate reductase/thymidylate synthase (InterPro:IPR012262), Thymidylate synthase (InterPro:IPR000398); BEST Arabidopsis thaliana protein match is: thymidylate synthase 1 (TAIR:AT2G16370.1); Has 13567 Blast hits to 13544 proteins in 2627 species: Archae - 73; Bacteria - 8801; Metazoa - 517; Fungi - 428; Plants - 92; Viruses - 256; Other Eukaryotes - 3400 (source: NCBI BLink). & (o81395|drts_maize : 493.0) Bifunctional dihydrofolate reductase-thymidylate synthase (DHFR-TS) [Includes: Dihydrofolate reductase (EC 1.5.1.3); Thymidylate synthase (EC 2.1.1.45)] - Zea mays (Maize) & (reliability: 974.0) &  (original description: no original description)","protein_coding"
"Kfl00044_0070","kfl00044_0070_v1.1","Klebsormidium nitens","(at4g10610 : 313.0) RNA-binding protein, putative. Member of a family of proteins having an PABC binding domain (PAM motif).; RNA-BINDING PROTEIN 37 (RBP37); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ataxin-2, C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana protein match is: CTC-interacting domain 11 (TAIR:AT1G32790.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 626.0) &  (original description: no original description)","protein_coding"
"Kfl00045_0200","kfl00045_0200_v1.1","Klebsormidium nitens","(at3g05480 : 323.0) Involved in the regulation of DNA damage repair and homologous recombination.; RAD9; CONTAINS InterPro DOMAIN/s: Rad9 (InterPro:IPR007268), Cell cycle checkpoint, RAD9 (InterPro:IPR016552). & (reliability: 646.0) &  (original description: no original description)","protein_coding"
"Kfl00045_0380","kfl00045_0380_v1.1","Klebsormidium nitens","(at5g63420 : 749.0) embryo defective 2746 (emb2746); FUNCTIONS IN: hydrolase activity, DNA binding, catalytic activity; INVOLVED IN: metabolic process, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108), Beta-lactamase-like (InterPro:IPR001279), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT2G38250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1498.0) &  (original description: no original description)","protein_coding"
"Kfl00046_0010","kfl00046_0010_v1.1","Klebsormidium nitens","(at2g29680 : 209.0) Encodes cell division control protein 6 (CDC6).; cell division control 6 (CDC6); FUNCTIONS IN: ATP binding; INVOLVED IN: regulation of cell cycle, DNA replication; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), CDC6, C-terminal (InterPro:IPR015163), Cell division control, Cdc6 (InterPro:IPR016314); BEST Arabidopsis thaliana protein match is: Cell division control, Cdc6 (TAIR:AT1G07270.1); Has 1385 Blast hits to 1377 proteins in 339 species: Archae - 397; Bacteria - 0; Metazoa - 348; Fungi - 289; Plants - 116; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink). & (reliability: 418.0) &  (original description: no original description)","protein_coding"
"Kfl00049_0150","kfl00049_0150_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00050_0330","kfl00050_0330_v1.1","Klebsormidium nitens","(at4g14570 : 607.0) acylaminoacyl-peptidase-related; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G36210.1); Has 9037 Blast hits to 9017 proteins in 1444 species: Archae - 238; Bacteria - 5246; Metazoa - 1023; Fungi - 365; Plants - 298; Viruses - 0; Other Eukaryotes - 1867 (source: NCBI BLink). & (reliability: 1214.0) &  (original description: no original description)","protein_coding"
"Kfl00051_0100","kfl00051_0100_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00054_0230","kfl00054_0230_v1.1","Klebsormidium nitens","(at5g42480 : 82.4) Shows homology to the cyanobacterial cell division protein Ftn2, mutant only has two mesophyll cell chloroplasts.  Protein was localized to a ring at the center of the chloroplasts. Probably involved in functions in the assembly and/or stabilization of the plastid-dividing FtsZ ring, inhibiting FtsZ filament formation in the chloroplast.; ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6 (ARC6); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, chloroplast fission, chloroplast organization; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: paralog of ARC6 (TAIR:AT3G19180.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 164.8) &  (original description: no original description)","protein_coding"
"Kfl00054_0235","kfl00054_0235_v1.1","Klebsormidium nitens","(at5g42480 : 110.0) Shows homology to the cyanobacterial cell division protein Ftn2, mutant only has two mesophyll cell chloroplasts.  Protein was localized to a ring at the center of the chloroplasts. Probably involved in functions in the assembly and/or stabilization of the plastid-dividing FtsZ ring, inhibiting FtsZ filament formation in the chloroplast.; ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6 (ARC6); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, chloroplast fission, chloroplast organization; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: paralog of ARC6 (TAIR:AT3G19180.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 220.0) &  (original description: no original description)","protein_coding"
"Kfl00055_0170","kfl00055_0170_v1.1","Klebsormidium nitens","(at3g57060 : 412.0) binding; FUNCTIONS IN: binding; INVOLVED IN: mitosis, chromosome condensation; LOCATED IN: nucleus, condensin complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Non-SMC condensin subunit, XCAP-D2/Cnd1 (InterPro:IPR007673), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT4G15890.1). & (reliability: 824.0) &  (original description: no original description)","protein_coding"
"Kfl00056_0050","kfl00056_0050_v1.1","Klebsormidium nitens","(q43715|toc75_pea : 322.0) Protein TOC75, chloroplast precursor (75 kDa translocon at the outer-envelope-membrane of chloroplasts) (Import intermediate associated protein of 75 kDa) (75 kDa chloroplast outer envelope protein) - Pisum sativum (Garden pea) & (at3g46740 : 307.0) Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Expressed in young dividing photosynthetic tissues. Knockout mutants are embryo lethal with arrested development at the two-cell stage. Knockout mutants have abnormal etioplasts.; translocon at the outer envelope membrane of chloroplasts 75-III (TOC75-III); FUNCTIONS IN: P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein targeting to chloroplast, chloroplast organization, embryonic morphogenesis; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184), Chloroplast envelope protein translocase, IAP75 (InterPro:IPR005689), Surface antigen variable number (InterPro:IPR010827); BEST Arabidopsis thaliana protein match is: Outer membrane OMP85 family protein (TAIR:AT4G09080.1); Has 4030 Blast hits to 1859 proteins in 343 species: Archae - 0; Bacteria - 806; Metazoa - 1937; Fungi - 82; Plants - 633; Viruses - 22; Other Eukaryotes - 550 (source: NCBI BLink). & (reliability: 614.0) &  (original description: no original description)","protein_coding"
"Kfl00060_0350","kfl00060_0350_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00061_0280","kfl00061_0280_v1.1","Klebsormidium nitens","(at1g08260 : 1660.0) Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.; TILTED 1 (TIL1); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: positive regulation of S phase of mitotic cell cycle, negative regulation of long-day photoperiodism, flowering, embryo development ending in seed dormancy; LOCATED IN: apoplast, epsilon DNA polymerase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), Domain of unknown function DUF1744 (InterPro:IPR013697), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134); BEST Arabidopsis thaliana protein match is: DNA polymerase epsilon catalytic subunit (TAIR:AT2G27120.1); Has 2011 Blast hits to 1700 proteins in 652 species: Archae - 331; Bacteria - 603; Metazoa - 305; Fungi - 291; Plants - 83; Viruses - 58; Other Eukaryotes - 340 (source: NCBI BLink). & (reliability: 3320.0) &  (original description: no original description)","protein_coding"
"Kfl00067_0060","kfl00067_0060_v1.1","Klebsormidium nitens","(at2g01120 : 291.0) Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.; origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527). & (reliability: 582.0) &  (original description: no original description)","protein_coding"
"Kfl00069_0130","kfl00069_0130_v1.1","Klebsormidium nitens","(at5g22010 : 421.0) replication factor C1 (RFC1); FUNCTIONS IN: DNA clamp loader activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex, intracellular; CONTAINS InterPro DOMAIN/s: DNA replication factor RFC1, C-terminal (InterPro:IPR013725), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA replication factor C, large subunit (InterPro:IPR012178), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G04730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 842.0) &  (original description: no original description)","protein_coding"
"Kfl00076_0270","kfl00076_0270_v1.1","Klebsormidium nitens","(at2g32240 : 110.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). & (reliability: 212.0) &  (original description: no original description)","protein_coding"
"Kfl00078_0250","kfl00078_0250_v1.1","Klebsormidium nitens","(at4g37210 : 149.0) Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 298.0) &  (original description: no original description)","protein_coding"
"Kfl00083_0160","kfl00083_0160_v1.1","Klebsormidium nitens","(at1g03530 : 92.8) nuclear assembly factor 1 (NAF1); FUNCTIONS IN: snoRNA binding, pseudouridine synthase activity; INVOLVED IN: biological_process unknown; LOCATED IN: box H/ACA snoRNP complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 (InterPro:IPR007504); Has 55446 Blast hits to 31211 proteins in 1683 species: Archae - 434; Bacteria - 10062; Metazoa - 16821; Fungi - 8873; Plants - 3938; Viruses - 821; Other Eukaryotes - 14497 (source: NCBI BLink). & (reliability: 185.6) &  (original description: no original description)","protein_coding"
"Kfl00090_0100","kfl00090_0100_v1.1","Klebsormidium nitens","(at1g12350 : 296.0) At1g12350 encodes phosphopantothenoylcysteine synthetase (phosphopantothenoylcysteine ligase). Its molecular function was shown to add cysteine forming (R)-4í-phospho-N-pantothenoylcysteine (PPC); 4-phospho-panto-thenoylcysteine synthetase (COAB); FUNCTIONS IN: phosphopantothenate--cysteine ligase activity, catalytic activity; INVOLVED IN: coenzyme A biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: DNA/pantothenate metabolism flavoprotein, C-terminal (InterPro:IPR007085); BEST Arabidopsis thaliana protein match is: DNA / pantothenate metabolism flavoprotein (TAIR:AT5G02080.1); Has 721 Blast hits to 697 proteins in 349 species: Archae - 42; Bacteria - 251; Metazoa - 127; Fungi - 134; Plants - 66; Viruses - 4; Other Eukaryotes - 97 (source: NCBI BLink). & (reliability: 592.0) &  (original description: no original description)","protein_coding"
"Kfl00103_0150","kfl00103_0150_v1.1","Klebsormidium nitens","(at1g73980 : 630.0) Phosphoribulokinase / Uridine kinase family; FUNCTIONS IN: adenylate cyclase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, cAMP biosynthetic process, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764), Adenylate cyclase (InterPro:IPR008172); BEST Arabidopsis thaliana protein match is: Phosphoribulokinase / Uridine kinase family (TAIR:AT1G26190.1); Has 4488 Blast hits to 4465 proteins in 1702 species: Archae - 37; Bacteria - 3307; Metazoa - 347; Fungi - 118; Plants - 328; Viruses - 2; Other Eukaryotes - 349 (source: NCBI BLink). & (reliability: 1260.0) &  (original description: no original description)","protein_coding"
"Kfl00108_0080","kfl00108_0080_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00121_0170","kfl00121_0170_v1.1","Klebsormidium nitens","(at5g54260 : 676.0) DNA repair and meiotic recombination protein, component of MRE11 complex with RAD50 and NBS1; MEIOTIC RECOMBINATION 11 (MRE11); FUNCTIONS IN: hydrolase activity, manganese ion binding, protein serine/threonine phosphatase activity, exonuclease activity, endonuclease activity; INVOLVED IN: double-strand break repair, DNA metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), DNA repair exonuclease (InterPro:IPR003701), Mre11, DNA-binding (InterPro:IPR007281); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1352.0) &  (original description: no original description)","protein_coding"
"Kfl00123_0030","kfl00123_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00125_0130","kfl00125_0130_v1.1","Klebsormidium nitens","(at1g63660 : 770.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1540.0) &  (original description: no original description)","protein_coding"
"Kfl00128_0270","kfl00128_0270_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00130_0130","kfl00130_0130_v1.1","Klebsormidium nitens","(at5g27740 : 530.0) A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.; EMBRYO DEFECTIVE 2775 (EMB2775); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp-loader complex, subunit E, C-terminal (InterPro:IPR019483), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA)  (TAIR:AT1G21690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1060.0) &  (original description: no original description)","protein_coding"
"Kfl00130_0230","kfl00130_0230_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00145_0210","kfl00145_0210_v1.1","Klebsormidium nitens","(o04235|ssrp1_vicfa : 554.0) FACT complex subunit SSRP1 (Facilitates chromatin transcription complex subunit SSRP1) (Recombination signal sequence recognition protein 1) - Vicia faba (Broad bean) & (at3g28730 : 540.0) encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SSRP1. Along with STP16 binds to the promoter of FLC.; high mobility group (HMG); CONTAINS InterPro DOMAIN/s: Structure-specific recognition protein (InterPro:IPR000969), High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B1 (TAIR:AT3G51880.2); Has 8066 Blast hits to 7188 proteins in 653 species: Archae - 0; Bacteria - 14; Metazoa - 5623; Fungi - 822; Plants - 671; Viruses - 15; Other Eukaryotes - 921 (source: NCBI BLink). & (reliability: 1080.0) &  (original description: no original description)","protein_coding"
"Kfl00153_0160","kfl00153_0160_v1.1","Klebsormidium nitens","(at4g02070 : 834.0) encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.; MUTS homolog 6 (MSH6); FUNCTIONS IN: damaged DNA binding; INVOLVED IN: mismatch repair; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein Msh6 (InterPro:IPR017261), DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-homologue MSH6 (InterPro:IPR015536), Tudor domain (InterPro:IPR002999); BEST Arabidopsis thaliana protein match is: homolog of DNA mismatch repair protein MSH3 (TAIR:AT4G25540.1). & (q9xgc9|msh2_maize : 175.0) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 1668.0) &  (original description: no original description)","protein_coding"
"Kfl00164_0030","kfl00164_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00165_0140","kfl00165_0140_v1.1","Klebsormidium nitens","(at4g29910 : 184.0) Origin Recognition Complex subunit 5. Involved in the initiation of DNA replication. Interacts strongly with all ORC subunits.; origin recognition complex protein 5 (ORC5); CONTAINS InterPro DOMAIN/s: Origin recognition complex, subunit 5 (InterPro:IPR020796); Has 287 Blast hits to 283 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi - 92; Plants - 43; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). & (reliability: 368.0) &  (original description: no original description)","protein_coding"
"Kfl00168_0120","kfl00168_0120_v1.1","Klebsormidium nitens","(at3g48000 : 408.0) Encodes a putative (NAD+) aldehyde dehydrogenase.; aldehyde dehydrogenase 2B4 (ALDH2B4); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 2B7 (TAIR:AT1G23800.1); Has 61695 Blast hits to 61296 proteins in 3003 species: Archae - 476; Bacteria - 35240; Metazoa - 2662; Fungi - 2127; Plants - 1668; Viruses - 0; Other Eukaryotes - 19522 (source: NCBI BLink). & (o24174|badh_orysa : 327.0) Betaine-aldehyde dehydrogenase (EC 1.2.1.8) (BADH) - Oryza sativa (Rice) & (reliability: 816.0) &  (original description: no original description)","protein_coding"
"Kfl00175_0130","kfl00175_0130_v1.1","Klebsormidium nitens","(at5g03690 : 550.0) Aldolase superfamily protein; FUNCTIONS IN: fructose-bisphosphate aldolase activity, catalytic activity; INVOLVED IN: pentose-phosphate shunt; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: Aldolase superfamily protein (TAIR:AT2G36460.1); Has 5010 Blast hits to 5004 proteins in 974 species: Archae - 0; Bacteria - 706; Metazoa - 1412; Fungi - 8; Plants - 478; Viruses - 0; Other Eukaryotes - 2406 (source: NCBI BLink). & (p17784|alf_orysa : 546.0) Fructose-bisphosphate aldolase cytoplasmic isozyme (EC 4.1.2.13) (Gravity-specific protein GSC 233) - Oryza sativa (Rice) & (reliability: 1076.0) &  (original description: no original description)","protein_coding"
"Kfl00175_0230","kfl00175_0230_v1.1","Klebsormidium nitens","(p21727|tpt_pea : 338.0) Triose phosphate/phosphate translocator, chloroplast precursor (cTPT) (p36) (E30) - Pisum sativum (Garden pea) & (at5g46110 : 333.0) mutant has Altered acclimation responses; Chloroplast Triose Phosphate Translocator; ACCLIMATION OF PHOTOSYNTHESIS TO  ENVIRONMENT 2 (APE2); FUNCTIONS IN: antiporter activity; INVOLVED IN: transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853), Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696); BEST Arabidopsis thaliana protein match is: glucose 6-phosphate/phosphate translocator 1 (TAIR:AT5G54800.1); Has 2560 Blast hits to 2558 proteins in 418 species: Archae - 2; Bacteria - 316; Metazoa - 499; Fungi - 419; Plants - 1040; Viruses - 0; Other Eukaryotes - 284 (source: NCBI BLink). & (reliability: 666.0) &  (original description: no original description)","protein_coding"
"Kfl00177_0170","kfl00177_0170_v1.1","Klebsormidium nitens","(at3g04780 : 210.0) Encodes a protein with little sequence identity with any other protein of known structure or function.  Part of this protein shows a 42% sequence identity with the C-terminal domain of the 32-kD human thioredoxin-like protein.; CONTAINS InterPro DOMAIN/s: Thioredoxin, core (InterPro:IPR015467), Proteasome-interacting thioredoxin-like domain, C-terminal (InterPro:IPR010400); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1000) (TAIR:AT2G25950.1); Has 606 Blast hits to 606 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 186; Plants - 75; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink). & (reliability: 420.0) &  (original description: no original description)","protein_coding"
"Kfl00184_0010","kfl00184_0010_v1.1","Klebsormidium nitens","(at2g07690 : 812.0) Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and  endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the  cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.; MINICHROMOSOME MAINTENANCE 5 (MCM5); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin, nucleus, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 5 (InterPro:IPR008048); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1). & (q43704|mcm3_maize : 306.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1624.0) &  (original description: no original description)","protein_coding"
"Kfl00217_0140","kfl00217_0140_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00240_0070","kfl00240_0070_v1.1","Klebsormidium nitens","(at5g55280 : 364.0) Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis.  It is involved in chloroplast division.; homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 (FTSZ1-1); FUNCTIONS IN: protein binding, structural molecule activity; INVOLVED IN: chloroplast fission, plastid fission; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cell division protein FtsZ, N-terminal (InterPro:IPR000158), Tubulin, conserved site (InterPro:IPR017975), Cell division protein FtsZ, conserved site (InterPro:IPR020805), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: Tubulin/FtsZ family protein (TAIR:AT3G52750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 728.0) &  (original description: no original description)","protein_coding"
"Kfl00250_0090","kfl00250_0090_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00257_0140","kfl00257_0140_v1.1","Klebsormidium nitens","(at3g06350 : 423.0) MATERNAL EFFECT EMBRYO ARREST 32 (MEE32); FUNCTIONS IN: NADP or NADPH binding, 3-dehydroquinate dehydratase activity, shikimate 5-dehydrogenase activity, binding, catalytic activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (InterPro:IPR006151), Aldolase-type TIM barrel (InterPro:IPR013785), Quinate/shikimate 5-dehydrogenase (InterPro:IPR011342), NAD(P)-binding domain (InterPro:IPR016040), Dehydroquinase class I (InterPro:IPR001381), Shikimate dehydrogenase substrate binding, N-terminal (InterPro:IPR013708); Has 14455 Blast hits to 14453 proteins in 2669 species: Archae - 507; Bacteria - 10604; Metazoa - 0; Fungi - 391; Plants - 114; Viruses - 0; Other Eukaryotes - 2839 (source: NCBI BLink). & (reliability: 846.0) &  (original description: no original description)","protein_coding"
"Kfl00264_0240","kfl00264_0240_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00268_0050","kfl00268_0050_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00302_0030","kfl00302_0030_v1.1","Klebsormidium nitens","(at1g67780 : 163.0) Zinc-finger domain of monoamine-oxidase A repressor R1 protein; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), DDT domain, subgroup (InterPro:IPR018500), Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: Zinc-finger domain of monoamine-oxidase A repressor R1 protein (TAIR:AT1G67270.1); Has 462 Blast hits to 453 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 73; Plants - 215; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). & (reliability: 326.0) &  (original description: no original description)","protein_coding"
"Kfl00302_0130","kfl00302_0130_v1.1","Klebsormidium nitens","(at3g12280 : 240.0) Encodes a retinoblastoma homologue RETINOBLASTOMA-RELATED protein (RBR or RBR1). RBR controls nuclear proliferation in the female gametophyte.  Also required for correct differentiation of male gametophytic cell types.  Regulates stem cell maintenance in Arabidopsis roots. Involved in the determination of cell cycle arrest in G1 phase after sucrose starvation. RBR1 is also involved in regulation of imprinted genes. Together with MSI1 it represses the expression of MET1. This in turn activates expression of the imprinted genes FIS2 and FWA.; retinoblastoma-related 1 (RBR1); FUNCTIONS IN: transcription factor binding; INVOLVED IN: in 15 processes; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Retinoblastoma-associated protein, B-box (InterPro:IPR002719), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Retinoblastoma-associated protein, A-box (InterPro:IPR002720). & (reliability: 480.0) &  (original description: no original description)","protein_coding"
"Kfl00307_0080","kfl00307_0080_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00307_0090","kfl00307_0090_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00336_0090","kfl00336_0090_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00340_0020","kfl00340_0020_v1.1","Klebsormidium nitens","(at4g33680 : 587.0) Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on chr 4 between L23H3 and nga1139.; ABERRANT GROWTH AND DEATH 2 (AGD2); FUNCTIONS IN: transaminase activity, copper ion binding, L,L-diaminopimelate aminotransferase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: LL-diaminopimelate aminotransferase, plant-related (InterPro:IPR019942), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: AGD2-like defense response protein 1 (TAIR:AT2G13810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1174.0) &  (original description: no original description)","protein_coding"
"Kfl00349_0050","kfl00349_0050_v1.1","Klebsormidium nitens","(o48653|dpola_orysa : 1124.0) DNA polymerase alpha catalytic subunit (EC 2.7.7.7) - Oryza sativa (Rice) & (at5g67100 : 1019.0) Encodes the putative catalytic subunit of the DNA polymerase alpha.  Interacts with genes involved in chromatin-mediated cellular memory. ICU2 genetically interacts with TERMINAL FLOWER2, the ortholog of HETEROCHROMATIN PROTEIN1 of animals and yeasts, and with the Polycomb group (PcG) gene CURLY LEAF. A number of regulatory genes were derepressed in the icu2-1 mutant, including genes associated with flowering time, floral meristem, and floral organ identity. Mutant has curled, involute leaves and causes early flowering.; INCURVATA2 (ICU2); FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: negative regulation of flower development, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134), Zinc finger, DNA-directed DNA polymerase, family B, alpha (InterPro:IPR015088), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B,  pol2 (InterPro:IPR004578); BEST Arabidopsis thaliana protein match is: DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (TAIR:AT5G63960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 2038.0) &  (original description: no original description)","protein_coding"
"Kfl00360_0090","kfl00360_0090_v1.1","Klebsormidium nitens","(at4g04350 : 1214.0) EMBRYO DEFECTIVE 2369 (EMB2369); FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, leucine-tRNA ligase activity, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial (InterPro:IPR002302), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (I, L, M and V) family protein (TAIR:AT5G49030.1); Has 40727 Blast hits to 36917 proteins in 3154 species: Archae - 1372; Bacteria - 23600; Metazoa - 846; Fungi - 790; Plants - 334; Viruses - 3; Other Eukaryotes - 13782 (source: NCBI BLink). & (reliability: 2428.0) &  (original description: no original description)","protein_coding"
"Kfl00364_0060","kfl00364_0060_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00376_0060","kfl00376_0060_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00376_0100","kfl00376_0100_v1.1","Klebsormidium nitens","(q6es10|hat1_orysa : 137.0) Probable acetyltransferase type B catalytic subunit (EC 2.3.1.48) (HAT B) - Oryza sativa (Rice) & (at5g56740 : 130.0) Encodes an enzyme with histone acetyltransferase activity. Histone H4 is the primary substrate for the enzyme. Prior acetylation of  lysine 12 of histone H4 reduces radioactive acetylation by  HAG2. HAG2 acetylates histone H4 lysine 12.; histone acetyltransferase of the GNAT family 2 (HAG2); FUNCTIONS IN: histone acetyltransferase activity, H4 histone acetyltransferase activity; INVOLVED IN: histone acetylation, chromatin modification, chromatin silencing at telomere; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone acetyltransferase type B, catalytic subunit (InterPro:IPR017380), GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Histone acetyl transferase HAT1 N-terminal (InterPro:IPR019467); Has 368 Blast hits to 368 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 147; Plants - 50; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). & (reliability: 260.0) &  (original description: no original description)","protein_coding"
"Kfl00388_0030","kfl00388_0030_v1.1","Klebsormidium nitens","(at1g26170 : 702.0) ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G59020.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1404.0) &  (original description: no original description)","protein_coding"
"Kfl00422_0010","kfl00422_0010_v1.1","Klebsormidium nitens","(at1g44900 : 989.0) Encodes MCM2 (MINICHROMOSOME MAINTENANCE 2), a protein essential to embryo development. Overexpression results in altered root meristem function.; MINICHROMOSOME MAINTENANCE 2 (MCM2); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: nuclear chromatin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 2 (InterPro:IPR008045), MCM protein 2, N-terminal (InterPro:IPR021092); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1). & (q43704|mcm3_maize : 308.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1978.0) &  (original description: no original description)","protein_coding"
"Kfl00425_0040","kfl00425_0040_v1.1","Klebsormidium nitens","(at1g80560 : 526.0) The AtIMD2 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids.; isopropylmalate dehydrogenase 2 (IMD2); FUNCTIONS IN: 3-isopropylmalate dehydrogenase activity; INVOLVED IN: leucine biosynthetic process, metabolic process; LOCATED IN: chloroplast, chloroplast stroma, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Isopropylmalate dehydrogenase (InterPro:IPR004429), Isocitrate/isopropylmalate dehydrogenase (InterPro:IPR001804), Isocitrate/isopropylmalate dehydrogenase, conserved site (InterPro:IPR019818); BEST Arabidopsis thaliana protein match is: isopropylmalate dehydrogenase 3 (TAIR:AT1G31180.1); Has 15265 Blast hits to 15265 proteins in 2613 species: Archae - 395; Bacteria - 8292; Metazoa - 578; Fungi - 832; Plants - 243; Viruses - 0; Other Eukaryotes - 4925 (source: NCBI BLink). & (p29102|leu3_brana : 521.0) 3-isopropylmalate dehydrogenase, chloroplast precursor (EC 1.1.1.85) (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) - Brassica napus (Rape) & (reliability: 1052.0) &  (original description: no original description)","protein_coding"
"Kfl00431_0060","kfl00431_0060_v1.1","Klebsormidium nitens","(at3g25660 : 580.0) Amidase family protein; FUNCTIONS IN: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor; INVOLVED IN: translation; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Amidase, conserved site (InterPro:IPR020556), Amidase (InterPro:IPR000120), Glutamyl-tRNA(Gln) amidotransferase A subunit (InterPro:IPR004412); BEST Arabidopsis thaliana protein match is: fatty acid amide hydrolase (TAIR:AT5G64440.1); Has 20819 Blast hits to 20789 proteins in 2485 species: Archae - 270; Bacteria - 10912; Metazoa - 560; Fungi - 1426; Plants - 399; Viruses - 0; Other Eukaryotes - 7252 (source: NCBI BLink). & (reliability: 1160.0) &  (original description: no original description)","protein_coding"
"Kfl00442_0050","kfl00442_0050_v1.1","Klebsormidium nitens","(at5g19820 : 1219.0) embryo defective 2734 (emb2734); FUNCTIONS IN: lyase activity, binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cell wall, phycobilisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G27640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 2438.0) &  (original description: no original description)","protein_coding"
"Kfl00456_0120","kfl00456_0120_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00468_0040","kfl00468_0040_v1.1","Klebsormidium nitens","(at4g20440 : 129.0) small nuclear ribonucleoprotein associated protein B; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleoplasm, Cajal body, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Small ribonucleoprotein associated, SmB/SmN (InterPro:IPR017131), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT5G44500.2); Has 66867 Blast hits to 32689 proteins in 1295 species: Archae - 65; Bacteria - 8747; Metazoa - 34794; Fungi - 7165; Plants - 8402; Viruses - 1350; Other Eukaryotes - 6344 (source: NCBI BLink). & (reliability: 258.0) &  (original description: no original description)","protein_coding"
"Kfl00479_0080","kfl00479_0080_v1.1","Klebsormidium nitens","(at1g12000 : 703.0) Phosphofructokinase family protein; FUNCTIONS IN: diphosphate-fructose-6-phosphate 1-phosphotransferase activity; INVOLVED IN: response to cadmium ion, glycolysis, photosynthesis; LOCATED IN: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex, cell wall, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase PfpB (InterPro:IPR011183), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: Phosphofructokinase family protein (TAIR:AT4G04040.1); Has 6357 Blast hits to 6276 proteins in 1942 species: Archae - 28; Bacteria - 4805; Metazoa - 61; Fungi - 134; Plants - 409; Viruses - 4; Other Eukaryotes - 916 (source: NCBI BLink). & (q41141|pfpb_ricco : 697.0) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) - Ricinus communis (Castor bean) & (reliability: 1406.0) &  (original description: no original description)","protein_coding"
"Kfl00481_0090","kfl00481_0090_v1.1","Klebsormidium nitens","(at4g02060 : 837.0) Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and  endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the  cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.; PROLIFERA (PRL); CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 7 (InterPro:IPR008050); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT5G44635.1). & (q43704|mcm3_maize : 242.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1674.0) &  (original description: no original description)","protein_coding"
"Kfl00497_0060","kfl00497_0060_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00501_0070","kfl00501_0070_v1.1","Klebsormidium nitens","(q9xfg3|tbg_phypa : 859.0) Tubulin gamma chain (Gamma tubulin) - Physcomitrella patens (Moss) & (at3g61650 : 827.0) Required for centrosomal and noncentrosomal microtubule nucleation. Involved in specification of cell identity, such as stomatal patterning. Constitutively expressed throughout plant.; gamma-tubulin (TUBG1); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: in 9 processes; LOCATED IN: mitochondrion, microtubule, plasma membrane, cytoplasm; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Gamma tubulin (InterPro:IPR002454), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: gamma-tubulin  complex protein 2 (TAIR:AT5G05620.1); Has 22646 Blast hits to 22602 proteins in 4766 species: Archae - 19; Bacteria - 43; Metazoa - 4166; Fungi - 13770; Plants - 1412; Viruses - 0; Other Eukaryotes - 3236 (source: NCBI BLink). & (reliability: 1654.0) &  (original description: no original description)","protein_coding"
"Kfl00502_0020","kfl00502_0020_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00523_0070","kfl00523_0070_v1.1","Klebsormidium nitens","(at5g58230 : 676.0) Encodes a WD-40 repeat containing protein that functions in chromatin assembly as part of the CAF1 and FIE complex. Mutants exhibit parthenogenetic development that includes proliferation of unfertilized endosperm and embryos. In heterozygous plants 50% of embryos abort. Of the aborted embryos the early aborted class are homozygous and the later aborting lass are heterozygotes in which the defective allele is maternally transmitted. Other phenotypes include defects in ovule morphogenesis and organ initiation,as well as increased levels of heterochromatic DNA. MSI1 is needed for the transition to flowering. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis. In the ovule, the MSI1 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization. MSI is biallelically expressed, the paternall allele is expressed in the endosperm and embryo and is not imprinted. MSI1 forms a complex with RBR1 that is required for activation of the imprinted genes FIS2 and FWA. This activation is mediated by MSI1/RBR1 mediated repression of MET1.; MULTICOPY SUPRESSOR OF IRA1 (MSI1); FUNCTIONS IN: protein binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus, chloroplast, chromatin remodeling complex, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone-binding protein RBBP4 (InterPro:IPR022052), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT2G16780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1352.0) &  (original description: no original description)","protein_coding"
"Kfl00545_0070","kfl00545_0070_v1.1","Klebsormidium nitens","(at3g02920 : 139.0) RPA32B; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Replication protein A, subunit RPA32 (InterPro:IPR014646), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication protein A, C-terminal (InterPro:IPR014892); BEST Arabidopsis thaliana protein match is: replicon protein A2 (TAIR:AT2G24490.2). & (reliability: 278.0) &  (original description: no original description)","protein_coding"
"Kfl00567_0050","kfl00567_0050_v1.1","Klebsormidium nitens","(at2g14050 : 705.0) minichromosome maintenance 9 (MCM9); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA-dependent DNA replication initiation, DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT1G44900.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q43704|mcm3_maize : 258.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1410.0) &  (original description: no original description)","protein_coding"
"Kfl00572_0080","kfl00572_0080_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00577_0060","kfl00577_0060_v1.1","Klebsormidium nitens","(at3g54670 : 1011.0) Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment.; TITAN8 (TTN8); CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosome 3 (TAIR:AT5G48600.1). & (reliability: 2022.0) &  (original description: no original description)","protein_coding"
"Kfl00608_0090","kfl00608_0090_v1.1","Klebsormidium nitens","(at5g61460 : 571.0) Encodes SMC6B (STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B), a component of the SMC5/6 complex.  SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage.; hypersensitive to MMS, irradiation and MMC (MIM); FUNCTIONS IN: ATP binding; INVOLVED IN: double-strand break repair, sister chromatid cohesion, chromosome segregation, response to X-ray, double-strand break repair via homologous recombination; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 6A (TAIR:AT5G07660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1142.0) &  (original description: no original description)","protein_coding"
"Kfl00609_0010","kfl00609_0010_v1.1","Klebsormidium nitens","(p49310|grp1_sinal : 126.0) Glycine-rich RNA-binding protein GRP1A - Sinapis alba (White mustard) (Brassica hirta) & (at2g21660 : 124.0) Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript.  Gene expression is induced by cold. GRP7 appears to promote stomatal opening and reduce tolerance under salt and dehydration stress conditions, but, promotes stomatal closing and thereby increases stress tolerance under conditions of cold tolerance. Loss of function mutations have increased susceptibility to pathogens suggesting a role in mediating innate immune response. Mutants are also late flowering in a non-photoperiodic manner and are responsive to vernalization suggesting an interaction with the autonomous flowering pathway.   There is a reduction of mRNA export from the nucleus in grp7 mutants. GRP7:GFP fusion proteins can be found in the cytosol and nucleus.  A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).; GLYCINE RICH PROTEIN 7 (ATGRP7); FUNCTIONS IN: double-stranded DNA binding, RNA binding, single-stranded DNA binding; INVOLVED IN: in 12 processes; LOCATED IN: nucleus, chloroplast, peroxisome, cytoplasm; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: cold, circadian rhythm, and RNA binding 1 (TAIR:AT4G39260.3); Has 381 Blast hits to 381 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 191; Fungi - 60; Plants - 124; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). & (reliability: 248.0) &  (original description: no original description)","protein_coding"
"Kfl00614_0020","kfl00614_0020_v1.1","Klebsormidium nitens","(at3g13870 : 803.0) required for regulated cell expansion and normal root hair development. Encodes an evolutionarily conserved protein with putative GTP-binding motifs that is implicated in the control of vesicle trafficking between the endoplasmic reticulum and the Golgi compartments.; ROOT HAIR DEFECTIVE 3 (RHD3); FUNCTIONS IN: GTP binding; INVOLVED IN: root epidermal cell differentiation, plant-type cell wall biogenesis, ER to Golgi vesicle-mediated transport, actin cytoskeleton organization, cell tip growth; LOCATED IN: endoplasmic reticulum, plasma membrane, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Root hair defective 3 GTP-binding (InterPro:IPR008803); BEST Arabidopsis thaliana protein match is: Root hair defective 3 GTP-binding protein (RHD3) (TAIR:AT1G72960.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1606.0) &  (original description: no original description)","protein_coding"
"Kfl00626_0050","kfl00626_0050_v1.1","Klebsormidium nitens","(at3g18524 : 1095.0) Encodes a DNA mismatch repair homolog of human MutS gene, MSH6. MSH2 is involved in maintaining genome stability and repressing recombination of mismatched heteroduplexes.There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2 has different binding specificity to different mismatches in combination with MSH3, MSH6, or MSH7.; MUTS homolog 2 (MSH2); FUNCTIONS IN: damaged DNA binding, protein binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, negative regulation of reciprocal meiotic recombination; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein, MSH2 (InterPro:IPR011184); BEST Arabidopsis thaliana protein match is: homolog of DNA mismatch repair protein MSH3 (TAIR:AT4G25540.1); Has 13560 Blast hits to 13453 proteins in 2654 species: Archae - 128; Bacteria - 8942; Metazoa - 734; Fungi - 813; Plants - 457; Viruses - 3; Other Eukaryotes - 2483 (source: NCBI BLink). & (q9xgc9|msh2_maize : 1091.0) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 2190.0) &  (original description: no original description)","protein_coding"
"Kfl00635_0040","kfl00635_0040_v1.1","Klebsormidium nitens","(at4g18460 : 204.0) D-Tyr-tRNA(Tyr) deacylase family protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: D-amino acid catabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D-tyrosyl-tRNA(Tyr) deacylase (InterPro:IPR003732); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 408.0) &  (original description: no original description)","protein_coding"
"Kfl00635_0050","kfl00635_0050_v1.1","Klebsormidium nitens","(at1g63680 : 628.0) Encodes AtMurE, a homolog of the bacterial MurE that catalyze the ATP-dependent formation of UDP-N-acetylmuramic acid-tripeptide in bacterial peptidoglycan biosynthesis.  Localized to plastids.  AtMurE is involved in chloroplast biogenesis.; MURE; FUNCTIONS IN: acid-amino acid ligase activity, ATP binding, ligase activity; INVOLVED IN: chloroplast fission, chloroplast organization, biosynthetic process; LOCATED IN: chloroplast, nucleoid; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Mur ligase, central (InterPro:IPR013221), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (InterPro:IPR005761), Mur ligase, N-terminal (InterPro:IPR000713), Mur ligase, C-terminal (InterPro:IPR004101); Has 18234 Blast hits to 18170 proteins in 2587 species: Archae - 50; Bacteria - 13487; Metazoa - 59; Fungi - 43; Plants - 60; Viruses - 2; Other Eukaryotes - 4533 (source: NCBI BLink). & (reliability: 1256.0) &  (original description: no original description)","protein_coding"
"Kfl00639_0030","kfl00639_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00662_0040","kfl00662_0040_v1.1","Klebsormidium nitens","(at1g16520 : 201.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G56080.1); Has 243 Blast hits to 234 proteins in 69 species: Archae - 2; Bacteria - 2; Metazoa - 61; Fungi - 9; Plants - 125; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). & (reliability: 402.0) &  (original description: no original description)","protein_coding"
"Kfl00733_0020","kfl00733_0020_v1.1","Klebsormidium nitens","(at2g31650 : 263.0) Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Involved in trimethylating histone H3-lysine 4. Involved in the formation, placement, and identity of flower organs. Role in regulation of homeotic genes. Functions as a receptor of  phosphatidylinositol 5-phosphate. Localizes to cytoplasm, plasma membrane and nuclei, shifting to nuclei in the presence of PI5P.; homologue of trithorax (ATX1); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), FY-rich, C-terminal (InterPro:IPR003889), Post-SET domain (InterPro:IPR003616), FY-rich, N-terminal (InterPro:IPR003888), Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Lamin-B receptor of TUDOR domain (InterPro:IPR019023), FY-rich, C-terminal subgroup (InterPro:IPR018516), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), PWWP (InterPro:IPR000313), FY-rich, N-terminal subgroup (InterPro:IPR018518), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: trithorax-like protein 2 (TAIR:AT1G05830.2); Has 7192 Blast hits to 6948 proteins in 474 species: Archae - 2; Bacteria - 393; Metazoa - 3480; Fungi - 840; Plants - 1251; Viruses - 0; Other Eukaryotes - 1226 (source: NCBI BLink). & (q8s4p6|ez1_maize : 92.4) Polycomb protein EZ1 (Enhancer of zeste protein 1) - Zea mays (Maize) & (reliability: 526.0) &  (original description: no original description)","protein_coding"
"Kfl00771_0050","kfl00771_0050_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00788_0010","kfl00788_0010_v1.1","Klebsormidium nitens","(at5g46280 : 794.0) MINICHROMOSOME MAINTENANCE 3 (MCM3); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 3 (InterPro:IPR008046); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT4G02060.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q43704|mcm3_maize : 643.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1588.0) &  (original description: no original description)","protein_coding"
"Kfl00858_0020","kfl00858_0020_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00998_0030","kfl00998_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl01071_0010","kfl01071_0010_v1.1","Klebsormidium nitens","(at3g46970 : 1044.0) Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen.; alpha-glucan phosphorylase 2 (PHS2); FUNCTIONS IN: phosphorylase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to cadmium ion, response to water deprivation; LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 35 (InterPro:IPR000811), Glycogen/starch/alpha-glucan phosphorylase (InterPro:IPR011833); BEST Arabidopsis thaliana protein match is: Glycosyl transferase, family 35 (TAIR:AT3G29320.1); Has 5792 Blast hits to 5741 proteins in 1741 species: Archae - 74; Bacteria - 3953; Metazoa - 555; Fungi - 138; Plants - 232; Viruses - 2; Other Eukaryotes - 838 (source: NCBI BLink). & (q9lkj3|phsh_wheat : 1042.0) Alpha-glucan phosphorylase, H isozyme (EC 2.4.1.1) (Starch phosphorylase H) - Triticum aestivum (Wheat) & (reliability: 2088.0) &  (original description: no original description)","protein_coding"
"Kfl01292_0010","kfl01292_0010_v1.1","Klebsormidium nitens","(at2g40550 : 368.0) Encodes a nuclear localized target of E2Fa-DPa, transcription factors controlling cell cycle progression. Required for sister chromatid cohesion and DNA repair.; E2F target gene 1 (ETG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: sister chromatid cohesion, postreplication repair, DNA replication; LOCATED IN: nuclear replisome, nucleus, chloroplast envelope, MCM complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2044, membrane (InterPro:IPR019140); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 736.0) &  (original description: no original description)","protein_coding"
"LOC_Os01g03110","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os01g14050","No alias","Oryza sativa","C2 domain containing protein, putative, expressed","protein_coding"
"LOC_Os01g14830","No alias","Oryza sativa","ribosomal protein L3, putative, expressed","protein_coding"
"LOC_Os01g50310","No alias","Oryza sativa","VIP1 protein, putative, expressed","protein_coding"
"LOC_Os01g52550","No alias","Oryza sativa","ABC transporter, ATP-binding protein, putative, expressed","protein_coding"
"LOC_Os01g54370","No alias","Oryza sativa","dihydropyrimidinase, putative, expressed","protein_coding"
"LOC_Os01g67134","No alias","Oryza sativa","ribosomal L18p/L5e family protein, putative, expressed","protein_coding"
"LOC_Os01g68545","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os01g72049","No alias","Oryza sativa","retrotransposon, putative, centromere-specific, expressed","protein_coding"
"LOC_Os01g72240","No alias","Oryza sativa","uridine 5-monophosphate synthase, putative, expressed","protein_coding"
"LOC_Os01g73160","No alias","Oryza sativa","40S ribosomal protein S10, putative, expressed","protein_coding"
"LOC_Os01g73550","No alias","Oryza sativa","mitochondrial-processing peptidase subunit alpha, mitochondrial precursor, putative, expressed","protein_coding"
"LOC_Os01g74030","No alias","Oryza sativa","pumilio-family RNA binding protein, putative, expressed","protein_coding"
"LOC_Os02g01350","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os02g16690","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os02g33610","No alias","Oryza sativa","metallo-beta-lactamase, putative, expressed","protein_coding"
"LOC_Os02g37870","No alias","Oryza sativa","Brix domain containing protein, putative, expressed","protein_coding"
"LOC_Os02g39820","No alias","Oryza sativa","PPR repeat domain containing protein, putative, expressed","protein_coding"
"LOC_Os02g49240","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os03g04340","No alias","Oryza sativa","C-methyltransferase, putative, expressed","protein_coding"
"LOC_Os03g05260","No alias","Oryza sativa","ankyrin repeat domain containing protein, expressed","protein_coding"
"LOC_Os03g06980","No alias","Oryza sativa","nucleic acid binding protein, putative, expressed","protein_coding"
"LOC_Os03g07840","No alias","Oryza sativa","adenylosuccinate synthetase, chloroplast precursor, putative, expressed","protein_coding"
"LOC_Os03g08850","No alias","Oryza sativa","AUXIN SIGNALING F-BOX 2, putative, expressed","protein_coding"
"LOC_Os03g63400","No alias","Oryza sativa","transcription factor BTF3, putative, expressed","protein_coding"
"LOC_Os04g51280","No alias","Oryza sativa","DAG protein, chloroplast precursor, putative, expressed","protein_coding"
"LOC_Os04g51290","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os04g53770","No alias","Oryza sativa","SDA1, putative, expressed","protein_coding"
"LOC_Os05g01450","No alias","Oryza sativa","eukaryotic translation initiation factor 3 subunit F, putative, expressed","protein_coding"
"LOC_Os05g01730","No alias","Oryza sativa","drought induced 19 protein, putative, expressed","protein_coding"
"LOC_Os05g04000","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os05g08360","No alias","Oryza sativa","rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed","protein_coding"
"LOC_Os05g18670","No alias","Oryza sativa","C4-dicarboxylate transporter/malic acid transport protein domain containing protein, expressed","protein_coding"
"LOC_Os05g23320","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os05g37884","No alias","Oryza sativa","50S ribosomal protein L33, putative, expressed","protein_coding"
"LOC_Os05g38210","No alias","Oryza sativa","mitochondrial glycoprotein, putative, expressed","protein_coding"
"LOC_Os05g40010","No alias","Oryza sativa","LTPL17 - Protease inhibitor/seed storage/LTP family protein precursor, expressed","protein_coding"
"LOC_Os05g48410","No alias","Oryza sativa","50S ribosomal protein L21, chloroplast precursor, putative, expressed","protein_coding"
"LOC_Os06g02510","No alias","Oryza sativa","ribosomal protein L13, putative, expressed","protein_coding"
"LOC_Os06g04220","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os06g11060","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os06g14040","No alias","Oryza sativa","ThiF family domain containing protein, putative, expressed","protein_coding"
"LOC_Os06g37440","No alias","Oryza sativa","elongation factor 1-gamma, putative, expressed","protein_coding"
"LOC_Os06g44540","No alias","Oryza sativa","HOTHEAD precursor, putative, expressed","protein_coding"
"LOC_Os06g45300","No alias","Oryza sativa","serine/threonine-protein kinase HT1, putative, expressed","protein_coding"
"LOC_Os06g48250","No alias","Oryza sativa","ATPase, putative, expressed","protein_coding"
"LOC_Os07g07520","No alias","Oryza sativa","OsFBX217 - F-box domain containing protein, expressed","protein_coding"
"LOC_Os07g10660","No alias","Oryza sativa","ribosomal protein, putative, expressed","protein_coding"
"LOC_Os07g16950","No alias","Oryza sativa","Mak16 protein domain containing protein, expressed","protein_coding"
"LOC_Os07g30670","No alias","Oryza sativa","2Fe-2S iron-sulfur cluster binding domain containing protein, expressed","protein_coding"
"LOC_Os07g40750","No alias","Oryza sativa","PPR repeat domain containing protein, putative, expressed","protein_coding"
"LOC_Os07g41180","No alias","Oryza sativa","RNA-binding protein-like, putative, expressed","protein_coding"
"LOC_Os07g46750","No alias","Oryza sativa","elongation factor protein, putative, expressed","protein_coding"
"LOC_Os08g07840","No alias","Oryza sativa","PolI-like DNA polymerase, putative, expressed","protein_coding"
"LOC_Os08g09350","No alias","Oryza sativa","gar2, putative, expressed","protein_coding"
"LOC_Os08g23730","No alias","Oryza sativa","class I glutamine amidotransferase, putative, expressed","protein_coding"
"LOC_Os08g28170","No alias","Oryza sativa","nucleobase-ascorbate transporter, putative, expressed","protein_coding"
"LOC_Os08g39820","No alias","Oryza sativa","pre-rRNA-processing protein TSR2, putative, expressed","protein_coding"
"LOC_Os08g42440","No alias","Oryza sativa","CCT/B-box zinc finger protein, putative, expressed","protein_coding"
"LOC_Os08g42560","No alias","Oryza sativa","tRNA synthetase class II core domain containing protein, expressed","protein_coding"
"LOC_Os09g31380","No alias","Oryza sativa","jmjC domain-containing protein 5, putative, expressed","protein_coding"
"LOC_Os10g03750","No alias","Oryza sativa","OsFBX349 - F-box domain containing protein, expressed","protein_coding"
"LOC_Os10g30640","No alias","Oryza sativa","translin, putative, expressed","protein_coding"
"LOC_Os10g40920","No alias","Oryza sativa","pentatricopeptide, putative, expressed","protein_coding"
"LOC_Os10g41410","No alias","Oryza sativa","nucleoside diphosphate kinase, putative, expressed","protein_coding"
"LOC_Os11g10340","No alias","Oryza sativa","OsFBX417 - F-box domain containing protein, expressed","protein_coding"
"LOC_Os11g15470","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os11g35050","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os11g39370","No alias","Oryza sativa","BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed","protein_coding"
"LOC_Os12g08180","No alias","Oryza sativa","receptor-like protein kinase 2 precursor, putative, expressed","protein_coding"
"LOC_Os12g11550","No alias","Oryza sativa","hypothetical protein","protein_coding"
"LOC_Os12g41390","No alias","Oryza sativa","homocysteine S-methyltransferase protein, putative, expressed","protein_coding"
"MA_103850g0010","No alias","Picea abies","(at3g20170 : 316.0) ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein with ARM repeat domain (TAIR:AT2G23140.2); Has 3151 Blast hits to 1598 proteins in 216 species: Archae - 4; Bacteria - 31; Metazoa - 442; Fungi - 499; Plants - 1924; Viruses - 0; Other Eukaryotes - 251 (source: NCBI BLink). & (reliability: 632.0) &  (original description: no original description)","protein_coding"
"MA_10435903g0020","No alias","Picea abies","(at1g52150 : 243.0) Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation.; ATHB-15; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), MEKHLA (InterPro:IPR013978), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox gene 8 (TAIR:AT4G32880.1); Has 3126 Blast hits to 3055 proteins in 249 species: Archae - 0; Bacteria - 0; Metazoa - 767; Fungi - 91; Plants - 2233; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). & (reliability: 486.0) &  (original description: no original description)","protein_coding"
"MA_10436296g0020","No alias","Picea abies","(at2g36810 : 248.0) ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 392 Blast hits to 295 proteins in 82 species: Archae - 0; Bacteria - 2; Metazoa - 305; Fungi - 6; Plants - 46; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). & (reliability: 496.0) &  (original description: no original description)","protein_coding"
"MA_10436767g0010","No alias","Picea abies","(at4g30710 : 228.0) Family of unknown function (DUF566) ; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF566 (InterPro:IPR007573); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF566)  (TAIR:AT2G24070.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 456.0) &  (original description: no original description)","protein_coding"
"MA_1187g0010","No alias","Picea abies","(at4g30840 : 145.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 290.0) &  (original description: no original description)","protein_coding"
"MA_132717g0010","No alias","Picea abies","(at3g03300 : 114.0) Encodes a Dicer-like protein that functions in the antiviral silencing response in turnip-crinkle virus-infected plants but not in TMV or CMV-strain-Y-infected plants.  Involved in the production of ta-siRNAs. Partially antagonizes the production of miRNAs by DCL1. Substitutes for DCL4 to produce viral siRNA when DCL4 is missing or inhibited. Able to produce siRNAs but not miRNAs.; dicer-like 2 (DCL2); FUNCTIONS IN: in 7 functions; INVOLVED IN: defense response to virus, maintenance of DNA methylation, production of ta-siRNAs involved in RNA interference; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: dicer-like 4 (TAIR:AT5G20320.1). & (reliability: 228.0) &  (original description: no original description)","protein_coding"
"MA_171319g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding"
"MA_214290g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding"
"MA_27968g0010","No alias","Picea abies","(at1g65910 : 231.0) NAC domain containing protein 28 (NAC028); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 86 (TAIR:AT5G17260.1); Has 3059 Blast hits to 3053 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 3044; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). & (q7gcl7|nac74_orysa : 189.0) NAC domain-containing protein 74 (ONAC074) - Oryza sativa (Rice) & (reliability: 448.0) &  (original description: no original description)","protein_coding"
"MA_448279g0010","No alias","Picea abies","(at2g13600 : 423.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G22070.1); Has 46660 Blast hits to 13875 proteins in 226 species: Archae - 0; Bacteria - 4; Metazoa - 74; Fungi - 58; Plants - 45878; Viruses - 0; Other Eukaryotes - 646 (source: NCBI BLink). & (q76c99|rf1_orysa : 110.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 846.0) &  (original description: no original description)","protein_coding"
"MA_52285g0010","No alias","Picea abies","(at1g63660 : 795.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1590.0) &  (original description: no original description)","protein_coding"
"MA_5325257g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding"
"MA_578116g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding"
"MA_7670414g0010","No alias","Picea abies","(at1g69550 : 195.0) disease resistance protein (TIR-NBS-LRR class); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G11250.1); Has 8455 Blast hits to 8197 proteins in 261 species: Archae - 0; Bacteria - 113; Metazoa - 3; Fungi - 4; Plants - 8303; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). & (reliability: 390.0) &  (original description: no original description)","protein_coding"
"MA_82573g0010","No alias","Picea abies","(at1g10650 : 140.0) SBP (S-ribonuclease binding protein) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), S-ribonuclease binding protein, SBP1, pollen (InterPro:IPR017066); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT1G60610.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 280.0) &  (original description: no original description)","protein_coding"
"Mp1g02250.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp1g20580.1","No alias","Marchantia polymorpha","Disease resistance protein TAO1 OS=Arabidopsis thaliana (sp|q9fi14|tao1_arath : 194.0)","protein_coding"
"Mp1g20710.1","No alias","Marchantia polymorpha","component GCP3 of gamma-Tubulin ring complex (gamma-TuRC)","protein_coding"
"Mp1g21100.1","No alias","Marchantia polymorpha","component mtRPL22 of large ribosomal subunit proteome","protein_coding"
"Mp1g23030.1","No alias","Marchantia polymorpha","autophagic adaptor protein (DSK2)","protein_coding"
"Mp1g23860.1","No alias","Marchantia polymorpha","component NOC2 of ribosomal subunit nuclear export complexes","protein_coding"
"Mp1g24170.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp1g25460.1","No alias","Marchantia polymorpha","GMP synthase","protein_coding"
"Mp2g00370.1","No alias","Marchantia polymorpha","snoRNP scaffold component Nop58 of snoRNP rRNA methylation complex","protein_coding"
"Mp2g00560.1","No alias","Marchantia polymorpha","component Tim17 of inner mitochondrion membrane TIM translocation system","protein_coding"
"Mp2g02140.1","No alias","Marchantia polymorpha","large subunit gamma of AP-1 trans-Golgi network cargo adaptor complex","protein_coding"
"Mp2g06870.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp2g06960.1","No alias","Marchantia polymorpha","RING-H2-class E3 ligase","protein_coding"
"Mp2g07900.1","No alias","Marchantia polymorpha","Protein KINESIN LIGHT CHAIN-RELATED 3 OS=Arabidopsis thaliana (sp|f4hsx9|klcr3_arath : 197.0)","protein_coding"
"Mp2g09940.1","No alias","Marchantia polymorpha","diacylglycerol kinase","protein_coding"
"Mp2g12610.1","No alias","Marchantia polymorpha","calcium-activated protease (Phytocalpain)","protein_coding"
"Mp2g16930.1","No alias","Marchantia polymorpha","component eIF3i of eIF3 mRNA-to-PIC binding complex","protein_coding"
"Mp2g26330.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp3g00050.1","No alias","Marchantia polymorpha","subunit alpha of coat protein complex","protein_coding"
"Mp3g00870.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp3g05390.1","No alias","Marchantia polymorpha","N-acylphosphatidylethanolamine synthase OS=Arabidopsis thaliana (sp|q9zv87|napes_arath : 296.0)","protein_coding"
"Mp3g11030.1","No alias","Marchantia polymorpha","motor protein (Kinesin-12)","protein_coding"
"Mp3g11810.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp3g11850.1","No alias","Marchantia polymorpha","Uncharacterized protein At5g49945 OS=Arabidopsis thaliana (sp|q94cc0|y5994_arath : 353.0)","protein_coding"
"Mp3g22080.1","No alias","Marchantia polymorpha","protein kinase (CDPK)","protein_coding"
"Mp3g23480.1","No alias","Marchantia polymorpha","class VIII myosin microfilament-based motor protein","protein_coding"
"Mp3g24240.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp4g00610.1","No alias","Marchantia polymorpha","isopentenyl diphosphate isomerase","protein_coding"
"Mp4g03900.1","No alias","Marchantia polymorpha","RNA helicase component MTR4/HEN2 of Nuclear Exosome Targeting (NEXT) activation complex","protein_coding"
"Mp4g07620.1","No alias","Marchantia polymorpha","U-box domain-containing protein 4 OS=Arabidopsis thaliana (sp|o22193|pub4_arath : 496.0)","protein_coding"
"Mp4g09070.1","No alias","Marchantia polymorpha","component eIF3d of eIF3 mRNA-to-PIC binding complex","protein_coding"
"Mp4g09260.1","No alias","Marchantia polymorpha","Met-tRNA positioning component eIF5B of initiator tRNA carrier complex","protein_coding"
"Mp4g10660.1","No alias","Marchantia polymorpha","iron chelator transporter (YSL). ferric cation-chelator transporter (YSL)","protein_coding"
"Mp4g11360.1","No alias","Marchantia polymorpha","component VPS18 of HOPS/CORVET membrane tethering complexes","protein_coding"
"Mp4g14550.1","No alias","Marchantia polymorpha","no description available(sp|q65xs5|bc10_orysj : 182.0)","protein_coding"
"Mp4g14950.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp4g16430.1","No alias","Marchantia polymorpha","P-loop NTPase domain-containing protein LPA1 OS=Oryza sativa subsp. japonica (sp|b9f4i8|lpa1_orysj : 592.0)","protein_coding"
"Mp4g17510.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp5g00160.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp5g00320.1","No alias","Marchantia polymorpha","histone methylase (PRMT1)","protein_coding"
"Mp5g07170.1","No alias","Marchantia polymorpha","4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana (sp|q9m0x9|4cll7_arath : 488.0)","protein_coding"
"Mp5g11790.1","No alias","Marchantia polymorpha","component MIP2 of DSL1 (Depends-on-SLY1) complex","protein_coding"
"Mp5g18070.1","No alias","Marchantia polymorpha","regulatory component RPN10 of 26S proteasome","protein_coding"
"Mp5g19610.1","No alias","Marchantia polymorpha","Probable aldo-keto reductase 2 OS=Oryza sativa subsp. japonica (sp|q7xt99|akr2_orysj : 437.0) & Enzyme classification.EC_1 oxidoreductases.EC_1.1 oxidoreductase acting on CH-OH group of donor(50.1.1 : 405.9)","protein_coding"
"Mp5g20140.1","No alias","Marchantia polymorpha","sterol delta24 reductase","protein_coding"
"Mp5g24560.1","No alias","Marchantia polymorpha","alpha-1,2 mannosidase (MNS)","protein_coding"
"Mp6g10920.1","No alias","Marchantia polymorpha","component AUG5 of Augmin gamma-TuRC recruiting complex","protein_coding"
"Mp6g12110.1","No alias","Marchantia polymorpha","eIF2-alpha kinase co-activator (ILITHYIA/GCN1)","protein_coding"
"Mp6g15340.1","No alias","Marchantia polymorpha","RAB-GTPase-activating protein (RAB-GAP)","protein_coding"
"Mp6g16470.1","No alias","Marchantia polymorpha","regulatory component RPT2 of 26S proteasome","protein_coding"
"Mp6g18210.1","No alias","Marchantia polymorpha","catalytic component SEC11 of SPC endoplasmic signal peptidase complex","protein_coding"
"Mp6g21520.1","No alias","Marchantia polymorpha","solute transporter (NAT)","protein_coding"
"Mp7g00370.1","No alias","Marchantia polymorpha","receptor-like protein kinase (RLCK-V)","protein_coding"
"Mp7g03530.1","No alias","Marchantia polymorpha","pre-mRNA-processing protein (LUC7)","protein_coding"
"Mp7g04190.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp7g10500.1","No alias","Marchantia polymorpha","Proton pump-interactor 1 OS=Arabidopsis thaliana (sp|o23144|ppi1_arath : 147.0)","protein_coding"
"Mp7g12890.1","No alias","Marchantia polymorpha","DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa subsp. japonica (sp|q84t03|rh27_orysj : 647.0)","protein_coding"
"Mp7g13330.1","No alias","Marchantia polymorpha","component SF3B3 of splicing factor 3B complex","protein_coding"
"Mp7g13810.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp7g16810.1","No alias","Marchantia polymorpha","component SNX1 of Retromer protein recycling complex","protein_coding"
"Mp8g02930.1","No alias","Marchantia polymorpha","sulfate transporter (SULTR)","protein_coding"
"Mp8g06730.1","No alias","Marchantia polymorpha","P2A-type calcium cation-transporting ATPase (ECA)","protein_coding"
"Mp8g06760.1","No alias","Marchantia polymorpha","Gibberellin receptor GID1C OS=Arabidopsis thaliana (sp|q940g6|gid1c_arath : 155.0)","protein_coding"
"Mp8g09070.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp8g11450.1","No alias","Marchantia polymorpha","transcription factor (AP2)","protein_coding"
"Mp8g13070.1","No alias","Marchantia polymorpha","subfamily ABCG transporter","protein_coding"
"Mp8g13580.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp8g14760.1","No alias","Marchantia polymorpha","pre-60S ribosomal subunit export factor (ARX1)","protein_coding"
"Mp8g17210.1","No alias","Marchantia polymorpha","NUG1/NSN1 LSU processome regulatory GTPase","protein_coding"
"Potri.003G128200","No alias","Populus trichocarpa","GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative","protein_coding"
"Pp1s115_106V6","No alias","Physcomitrella patens","ethylene receptor","protein_coding"
"Pp1s123_90V6","No alias","Physcomitrella patens","F26O13.10; protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana]","protein_coding"
"Pp1s125_13V6","No alias","Physcomitrella patens","optic atrophy 3","protein_coding"
"Pp1s130_152V6","No alias","Physcomitrella patens","T1P17.180; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s152_5V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s180_21V6","No alias","Physcomitrella patens","F17J16.140; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s191_80V6","No alias","Physcomitrella patens","ataxin 10","protein_coding"
"Pp1s207_71V6","No alias","Physcomitrella patens","K2A18.16; protein phosphatase 2C-related protein [Arabidopsis thaliana]","protein_coding"
"Pp1s210_44V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s213_125V6","No alias","Physcomitrella patens","serine threonine-protein kinase prp4","protein_coding"
"Pp1s241_129V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s258_47V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s28_172V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s29_19V6","No alias","Physcomitrella patens","FCAALL.424; DEAD/DEAH box helicase, putative (RH28) [Arabidopsis thaliana]","protein_coding"
"Pp1s306_41V6","No alias","Physcomitrella patens","F3A4.70; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s312_11V6","No alias","Physcomitrella patens","histone deacetylase","protein_coding"
"Pp1s34_403V6","No alias","Physcomitrella patens","protein arginine n-methyltransferase","protein_coding"
"Pp1s405_5V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s56_261V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s69_221V6","No alias","Physcomitrella patens","T24D18.25; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s71_289V6","No alias","Physcomitrella patens","F28D6.14; transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana]","protein_coding"
"Pp1s8_124V6","No alias","Physcomitrella patens","gmp synthase","protein_coding"
"PSME_00000059-RA","No alias","Pseudotsuga menziesii","(at5g06720 : 342.0) peroxidase 2 (PA2); FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G06730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p11965|perx_tobac : 306.0) Lignin-forming anionic peroxidase precursor (EC 1.11.1.7) (TOPA) - Nicotiana tabacum (Common tobacco) & (reliability: 684.0) &  (original description: no original description)","protein_coding"
"PSME_00000163-RA","No alias","Pseudotsuga menziesii","(at4g39880 : 156.0) Ribosomal protein L23/L15e family protein; FUNCTIONS IN: structural constituent of ribosome, nucleotide binding; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23/L15e, core (InterPro:IPR012678), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025); Has 3109 Blast hits to 3109 proteins in 1190 species: Archae - 0; Bacteria - 2436; Metazoa - 5; Fungi - 1; Plants - 57; Viruses - 0; Other Eukaryotes - 610 (source: NCBI BLink). & (reliability: 312.0) &  (original description: no original description)","protein_coding"
"PSME_00000266-RA","No alias","Pseudotsuga menziesii","(at5g57655 : 136.0) xylose isomerase family protein; FUNCTIONS IN: xylose isomerase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Xylose isomerase-like, TIM barrel domain (InterPro:IPR013022), Xylose isomerase, bacterial type (InterPro:IPR013452), Xylose isomerase (InterPro:IPR001998), Xylose isomerase, TIM barrel domain (InterPro:IPR012307); Has 2515 Blast hits to 2515 proteins in 856 species: Archae - 2; Bacteria - 1880; Metazoa - 11; Fungi - 2; Plants - 82; Viruses - 0; Other Eukaryotes - 538 (source: NCBI BLink). & (q40082|xyla_horvu : 125.0) Xylose isomerase (EC 5.3.1.5) - Hordeum vulgare (Barley) & (reliability: 272.0) &  (original description: no original description)","protein_coding"
"PSME_00000351-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00000817-RA","No alias","Pseudotsuga menziesii","(at5g63980 : 304.0) Encodes a bifunctional protein that has 3'(2'),5'-bisphosphate nucleotidase and inositol polyphosphate 1-phosphatase activities and rescues sulfur assimilation mutants in yeast.  It is involved in the response to cold, drought (negative regulator of drought tolerance), and ABA. Mutants in this gene exhibit enhanced induction of stress genes in response to cold, ABA, salt and dehydration due to higher accumulation of the second messenger, inositol (1,4,5)- triphosphate (IP(3)). Involved in degradation of small mRNAs. Mutants also affect the accumulation of miRNA target cleavage products. Regulates light-dependent repression of hypocotyl elongation and flowering time via its 3'(2'),5'-bisphosphate nucleotidase activity.; SAL1; FUNCTIONS IN: 3'(2'),5'-bisphosphate nucleotidase activity, nucleotide phosphatase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: in 15 processes; LOCATED IN: nucleus, chloroplast, chloroplast stroma, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase (InterPro:IPR000760), 3(2),5 -bisphosphate nucleotidase HAL2 (InterPro:IPR006239), Inositol monophosphatase, metal-binding site (InterPro:IPR020583); BEST Arabidopsis thaliana protein match is: Inositol monophosphatase family protein (TAIR:AT5G64000.1); Has 8292 Blast hits to 8290 proteins in 1695 species: Archae - 42; Bacteria - 5356; Metazoa - 208; Fungi - 241; Plants - 302; Viruses - 0; Other Eukaryotes - 2143 (source: NCBI BLink). & (q40639|dpnp_orysa : 276.0) 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) (3'(2'),5-bisphosphonucleoside 3'(2')-phosphohydrolase) (DPNPase) - Oryza sativa (Rice) & (reliability: 608.0) &  (original description: no original description)","protein_coding"
"PSME_00001115-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00001865-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00001899-RA","No alias","Pseudotsuga menziesii","(at5g07180 : 161.0) Encodes a receptor-like kinase that, together with ER and ERL1 governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes.  It is also important for maintaining stomatal stem cell activity and preventing terminal differentiation of the meristemoid into the guard mother cell. When heterozygous in an er/erl1 null background, plants are female sterile due to cell division defect in the integuments.; ERECTA-like 2 (ERL2); FUNCTIONS IN: kinase activity; INVOLVED IN: stomatal complex morphogenesis, embryo sac development, ovule development; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ERECTA-like 1 (TAIR:AT5G62230.1); Has 220369 Blast hits to 138160 proteins in 3652 species: Archae - 160; Bacteria - 22012; Metazoa - 72756; Fungi - 10822; Plants - 87289; Viruses - 476; Other Eukaryotes - 26854 (source: NCBI BLink). & (reliability: 322.0) &  (original description: no original description)","protein_coding"
"PSME_00001907-RA","No alias","Pseudotsuga menziesii","(at3g12770 : 579.0) Encodes a pentatricopeptide repeat protein (PPR) protein involved in mitochondrial mRNA editing.; mitochondrial editing factor  22 (MEF22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 43523 Blast hits to 14475 proteins in 290 species: Archae - 0; Bacteria - 15; Metazoa - 148; Fungi - 158; Plants - 42447; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink). & (q76c99|rf1_orysa : 91.3) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1158.0) &  (original description: no original description)","protein_coding"
"PSME_00002016-RA","No alias","Pseudotsuga menziesii","(at1g28110 : 555.0) serine carboxypeptidase-like 45 (SCPL45); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 46 (TAIR:AT2G33530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p08819|cbp2_wheat : 340.0) Serine carboxypeptidase 2 (EC 3.4.16.6) (Serine carboxypeptidase II) (Carboxypeptidase D) (CPDW-II) (CP-WII) [Contains: Serine carboxypeptidase 2 chain A (Serine carboxypeptidase II chain A); Serine carboxypeptidase 2 chain B (Serine ca & (reliability: 1110.0) &  (original description: no original description)","protein_coding"
"PSME_00002039-RA","No alias","Pseudotsuga menziesii","(at5g22100 : 164.0) RNA cyclase family protein; FUNCTIONS IN: RNA-3'-phosphate cyclase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: RNA 3'-terminal phosphate cyclase-like, conserved site (InterPro:IPR020719), RNA 3'-terminal phosphate cyclase-like (InterPro:IPR000228), RNA 3'-terminal phosphate cyclase, insert domain (InterPro:IPR013796), RNA 3'-terminal phosphate cyclase-like, eukaryotic (InterPro:IPR016443), RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (InterPro:IPR013792); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 328.0) &  (original description: no original description)","protein_coding"
"PSME_00002251-RA","No alias","Pseudotsuga menziesii","(at4g08170 : 139.0) Inositol 1,3,4-trisphosphate 5/6-kinase family protein; FUNCTIONS IN: magnesium ion binding, inositol-1,3,4-trisphosphate 5/6-kinase activity, catalytic activity, ATP binding, inositol tetrakisphosphate 1-kinase activity; INVOLVED IN: response to wounding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATP-grasp fold (InterPro:IPR011761), Inositol 1, 3, 4-trisphosphate 56-kinase (InterPro:IPR008656); BEST Arabidopsis thaliana protein match is: Inositol 1,3,4-trisphosphate 5/6-kinase family protein (TAIR:AT4G33770.1). & (q84y01|itpk1_maize : 87.4) Inositol-tetrakisphosphate 1-kinase 1 (EC 2.7.1.134) (Inositol-triphosphate 5/6-kinase 1) (EC 2.7.1.159) (Inositol 1,3,4-trisphosphate 5/6-kinase 1) (Ins(1,3,4)P(3) 5/6-kinase 1) (ZmIpk) (Low phytic acid protein 2) - Zea mays (Maize) & (reliability: 278.0) &  (original description: no original description)","protein_coding"
"PSME_00002752-RA","No alias","Pseudotsuga menziesii","(at2g19330 : 212.0) Encodes PIRL6, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.; plant intracellular ras group-related LRR 6 (PIRL6); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 7 (TAIR:AT4G29880.1); Has 63918 Blast hits to 28732 proteins in 1043 species: Archae - 35; Bacteria - 6419; Metazoa - 27911; Fungi - 2141; Plants - 23572; Viruses - 21; Other Eukaryotes - 3819 (source: NCBI BLink). & (reliability: 418.0) &  (original description: no original description)","protein_coding"
"PSME_00002793-RA","No alias","Pseudotsuga menziesii","(at1g09420 : 252.0) Encodes a protein similar to glucose-6-phosphate dehydrogenase but, based on amino acid differences in the active site and lack of activity, does not encode a functional G6PDH.  The amino acid sequence for the consensus sequence of the G6PDH active site (DHYLGKE) differs in three places in this protein.  gc exon splice site at 20574 is based on protein alignment, and is not confirmed experimentally.; glucose-6-phosphate dehydrogenase 4 (G6PD4); FUNCTIONS IN: glucose-6-phosphate dehydrogenase activity; INVOLVED IN: oxidation reduction, glucose metabolic process, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-6-phosphate dehydrogenase, C-terminal (InterPro:IPR022675), NAD(P)-binding domain (InterPro:IPR016040), Glucose-6-phosphate dehydrogenase (InterPro:IPR001282), Glucose-6-phosphate dehydrogenase, NAD-binding (InterPro:IPR022674); BEST Arabidopsis thaliana protein match is: glucose-6-phosphate dehydrogenase 2 (TAIR:AT5G13110.1). & (q43839|g6pdc_soltu : 224.0) Glucose-6-phosphate 1-dehydrogenase, chloroplast precursor (EC 1.1.1.49) (G6PD) - Solanum tuberosum (Potato) & (reliability: 504.0) &  (original description: no original description)","protein_coding"
"PSME_00002873-RA","No alias","Pseudotsuga menziesii","(at2g37050 : 428.0) Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G67720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q8l4h4|nork_medtr : 320.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 856.0) &  (original description: no original description)","protein_coding"
"PSME_00002898-RA","No alias","Pseudotsuga menziesii","(at5g06530 : 533.0) ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G52310.1); Has 401964 Blast hits to 364471 proteins in 4136 species: Archae - 7187; Bacteria - 315702; Metazoa - 9377; Fungi - 6648; Plants - 5639; Viruses - 7; Other Eukaryotes - 57404 (source: NCBI BLink). & (q5w274|pdr3_tobac : 173.0) Pleiotropic drug resistance protein 3 (NtPDR3) - Nicotiana tabacum (Common tobacco) & (reliability: 1066.0) &  (original description: no original description)","protein_coding"
"PSME_00002956-RA","No alias","Pseudotsuga menziesii","(at3g42660 : 121.0) transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), Protein of unknown function DUF3639 (InterPro:IPR022100), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G23430.1); Has 41589 Blast hits to 20655 proteins in 706 species: Archae - 66; Bacteria - 8583; Metazoa - 14223; Fungi - 8894; Plants - 4578; Viruses - 3; Other Eukaryotes - 5242 (source: NCBI BLink). & (p49036|sus2_maize : 120.0) Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 2) - Zea mays (Maize) & (reliability: 220.0) &  (original description: no original description)","protein_coding"
"PSME_00003314-RA","No alias","Pseudotsuga menziesii","(at3g24255 : 94.4) RNA-directed DNA polymerase (reverse transcriptase)-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G23910.1); Has 169 Blast hits to 169 proteins in 55 species: Archae - 8; Bacteria - 18; Metazoa - 36; Fungi - 11; Plants - 53; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). & (reliability: 188.8) &  (original description: no original description)","protein_coding"
"PSME_00003468-RA","No alias","Pseudotsuga menziesii","(at2g15490 : 279.0) UDP-glycosyltransferase 73B4 (UGT73B4); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 73B5 (TAIR:AT2G15480.1). & (p56725|zox_phavu : 174.0) Zeatin O-xylosyltransferase (EC 2.4.2.40) (Zeatin O-beta-D-xylosyltransferase) - Phaseolus vulgaris (Kidney bean) (French bean) & (reliability: 516.0) &  (original description: no original description)","protein_coding"
"PSME_00003815-RA","No alias","Pseudotsuga menziesii","(at1g70610 : 172.0) member of TAP subfamily; transporter associated with antigen processing protein 1 (TAP1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1); Has 433965 Blast hits to 389325 proteins in 4163 species: Archae - 7467; Bacteria - 334124; Metazoa - 10295; Fungi - 7727; Plants - 5683; Viruses - 22; Other Eukaryotes - 68647 (source: NCBI BLink). & (q6yuu5|mdr_orysa : 129.0) Putative multidrug resistance protein (P-glycoprotein) - Oryza sativa (Rice) & (reliability: 344.0) &  (original description: no original description)","protein_coding"
"PSME_00003914-RA","No alias","Pseudotsuga menziesii","(at1g51130 : 307.0) Nse4, component of Smc5/6 DNA repair complex; CONTAINS InterPro DOMAIN/s: Nse4 (InterPro:IPR014854); BEST Arabidopsis thaliana protein match is: Nse4, component of Smc5/6 DNA repair complex (TAIR:AT3G20760.1); Has 297 Blast hits to 295 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 72; Fungi - 132; Plants - 74; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). & (reliability: 614.0) &  (original description: no original description)","protein_coding"
"PSME_00004008-RA","No alias","Pseudotsuga menziesii","(at4g27220 : 168.0) NB-ARC domain-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: NB-ARC domain-containing disease resistance protein (TAIR:AT4G27190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 328.0) &  (original description: no original description)","protein_coding"
"PSME_00004093-RA","No alias","Pseudotsuga menziesii",""(at3g52970 : 377.0) member of CYP76G; ""cytochrome P450, family 76, subfamily G, polypeptide 1"" (CYP76G1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 76, subfamily C, polypeptide 4 (TAIR:AT2G45550.1). & (q9sbq9|f3ph_pethy : 335.0) Flavonoid 3'-monooxygenase (EC 1.14.13.21) (Flavonoid 3'-hydroxylase) (Cytochrome P450 75B2) - Petunia hybrida (Petunia) & (reliability: 704.0) &  (original description: no original description)"","protein_coding"
"PSME_00004136-RA","No alias","Pseudotsuga menziesii","(at3g47340 : 97.1) encodes a glutamine-dependent asparagine synthetase, the predicted ASN1 peptide contains a purF-type glutamine-binding domain, and  is expressed predominantly in shoot tissues, where light has a negative effect on its mRNA accumulation. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.; glutamine-dependent asparagine synthase 1 (ASN1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Asparagine synthase (InterPro:IPR001962), Asparagine synthase, glutamine-hydrolyzing (InterPro:IPR006426), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: asparagine synthetase 3 (TAIR:AT5G10240.1); Has 9911 Blast hits to 9877 proteins in 1912 species: Archae - 315; Bacteria - 5703; Metazoa - 210; Fungi - 275; Plants - 333; Viruses - 5; Other Eukaryotes - 3070 (source: NCBI BLink). & (p19251|asns1_pea : 93.2) Asparagine synthetase, nodule [glutamine-hydrolyzing] (EC 6.3.5.4) (Glutamine-dependent asparagine synthetase) - Pisum sativum (Garden pea) & (reliability: 194.2) &  (original description: no original description)","protein_coding"
"PSME_00004139-RA","No alias","Pseudotsuga menziesii","(at4g20280 : 170.0) Encodes TAF11, a putative TBP-associated factor (TBP: TATA binding protein).; TBP-associated factor 11 (TAF11); FUNCTIONS IN: RNA polymerase II transcription factor activity, transcription initiation factor activity, DNA binding; INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TAFII28-like protein (InterPro:IPR006809), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TBP-associated factor 11B (TAIR:AT1G20000.1); Has 444 Blast hits to 437 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 211; Fungi - 119; Plants - 66; Viruses - 2; Other Eukaryotes - 46 (source: NCBI BLink). & (reliability: 340.0) &  (original description: no original description)","protein_coding"
"PSME_00004351-RA","No alias","Pseudotsuga menziesii","(at2g04845 : 135.0) Acyl-CoA N-acyltransferases (NAT) superfamily protein; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 393 Blast hits to 383 proteins in 188 species: Archae - 0; Bacteria - 98; Metazoa - 122; Fungi - 80; Plants - 36; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). & (reliability: 270.0) &  (original description: no original description)","protein_coding"
"PSME_00004544-RA","No alias","Pseudotsuga menziesii","(at5g48740 : 274.0) Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G67720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q8l4h4|nork_medtr : 248.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 514.0) &  (original description: no original description)","protein_coding"
"PSME_00005023-RA","No alias","Pseudotsuga menziesii","(at2g16850 : 399.0) plasma membrane intrinsic protein 2;8 (PIP2;8); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: root, flower, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 3 (TAIR:AT4G35100.2); Has 11009 Blast hits to 10999 proteins in 2241 species: Archae - 81; Bacteria - 5232; Metazoa - 1475; Fungi - 457; Plants - 2523; Viruses - 2; Other Eukaryotes - 1239 (source: NCBI BLink). & (q7xlr1|pip26_orysa : 384.0) Probable aquaporin PIP2.6 (Plasma membrane intrinsic protein 2.6) (OsPIP2.6) - Oryza sativa (Rice) & (reliability: 798.0) &  (original description: no original description)","protein_coding"
"PSME_00005114-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00005141-RA","No alias","Pseudotsuga menziesii","(at2g01170 : 255.0) Encodes a bidirectional amino acid transporter that can transport ala, arg, glu and lys but not GABA or pro with both export and import activity.  Its expression is localized in the vascular tissues suggesting a function in amino acids export from the phloem into sink tissue.; bidirectional amino acid transporter 1 (BAT1); FUNCTIONS IN: arginine transmembrane transporter activity, L-lysine transmembrane transporter activity, L-alanine transmembrane transporter activity, L-glutamate transmembrane transporter activity; INVOLVED IN: transport, amino acid transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid permease subfamily (InterPro:IPR004756), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 510.0) &  (original description: no original description)","protein_coding"
"PSME_00005330-RA","No alias","Pseudotsuga menziesii","(at1g02850 : 339.0) beta glucosidase 11 (BGLU11); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 10 (TAIR:AT4G27830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p49235|bglc_maize : 224.0) Beta-glucosidase, chloroplast precursor (EC 3.2.1.21) (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) - Zea mays (Maize) & (reliability: 678.0) &  (original description: no original description)","protein_coding"
"PSME_00005487-RA","No alias","Pseudotsuga menziesii","(at5g14230 : 507.0) CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink). & (reliability: 1014.0) &  (original description: no original description)","protein_coding"
"PSME_00005940-RA","No alias","Pseudotsuga menziesii","(at5g15410 : 820.0) 'defense, no death' gene (DND1) encodes a mutated cyclic nucleotide-gated cation channel; Same as CNGC2 (article ID 229): Cyclic nucleotide gated channel, activated by cAMP, conducts K+ and other monovalent cations but excludes Na+, does not contain the GYG amino acid sequence found in other channels with this conductivity profile.  Conducts Ca2+ into cells which is linked to the generation of NO and the NO signaling pathway involved in the innate immune response to pathogens.; DEFENSE NO DEATH 1 (DND1); CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated cation channel 4 (TAIR:AT5G54250.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1640.0) &  (original description: no original description)","protein_coding"
"PSME_00006008-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00006143-RA","No alias","Pseudotsuga menziesii","(at5g36930 : 223.0) Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G17680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 406.0) &  (original description: no original description)","protein_coding"
"PSME_00007065-RA","No alias","Pseudotsuga menziesii","(at4g13240 : 421.0) Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.; RHO guanyl-nucleotide exchange factor 9 (ROPGEF9); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 8 (TAIR:AT3G24620.1); Has 308 Blast hits to 304 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 306; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 842.0) &  (original description: no original description)","protein_coding"
"PSME_00007078-RA","No alias","Pseudotsuga menziesii","(at3g01420 : 631.0) Encodes an alpha-dioxygenase involved in protection against oxidative stress and cell death. Induced in response to Salicylic acid and oxidative stress.  Independent of NPR1 in  induction by salicylic acid.; DOX1; FUNCTIONS IN: lipoxygenase activity; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Haem peroxidase, animal (InterPro:IPR002007); BEST Arabidopsis thaliana protein match is: alpha dioxygenase (TAIR:AT1G73680.1); Has 1465 Blast hits to 1381 proteins in 214 species: Archae - 0; Bacteria - 94; Metazoa - 1085; Fungi - 168; Plants - 70; Viruses - 1; Other Eukaryotes - 47 (source: NCBI BLink). & (reliability: 1262.0) &  (original description: no original description)","protein_coding"
"PSME_00007097-RA","No alias","Pseudotsuga menziesii",""(at1g56170 : 141.0) Encodes a protein with similarity to a subunit of  the CCAAT promoter motif binding complex of yeast.One of two members of this class (HAP5B) and expressed in vegetative and reproductive tissues; ""nuclear factor Y, subunit C2"" (NF-YC2); CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C9 (TAIR:AT1G08970.2); Has 1485 Blast hits to 1485 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 583; Fungi - 338; Plants - 429; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink). & (reliability: 282.0) &  (original description: no original description)"","protein_coding"
"PSME_00007117-RA","No alias","Pseudotsuga menziesii","(at1g31320 : 142.0) LOB domain-containing protein 4 (LBD4); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: ASYMMETRIC LEAVES 2-like 9 (TAIR:AT1G16530.1); Has 1039 Blast hits to 1034 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1039; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 284.0) &  (original description: no original description)","protein_coding"
"PSME_00007230-RA","No alias","Pseudotsuga menziesii","(at3g14250 : 141.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: egg cell; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G53690.1); Has 3093 Blast hits to 3074 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 1283; Fungi - 653; Plants - 677; Viruses - 1; Other Eukaryotes - 479 (source: NCBI BLink). & (reliability: 282.0) &  (original description: no original description)","protein_coding"
"PSME_00007343-RA","No alias","Pseudotsuga menziesii","(q5w274|pdr3_tobac : 573.0) Pleiotropic drug resistance protein 3 (NtPDR3) - Nicotiana tabacum (Common tobacco) & (at1g15210 : 568.0) pleiotropic drug resistance 7 (PDR7); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: drug transmembrane transport; LOCATED IN: plasma membrane, chloroplast, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: ABC-2 and Plant PDR ABC-type transporter family protein (TAIR:AT1G59870.1); Has 383488 Blast hits to 290790 proteins in 4017 species: Archae - 7218; Bacteria - 309544; Metazoa - 9443; Fungi - 7090; Plants - 6323; Viruses - 4; Other Eukaryotes - 43866 (source: NCBI BLink). & (reliability: 1136.0) &  (original description: no original description)","protein_coding"
"PSME_00007387-RA","No alias","Pseudotsuga menziesii","(at2g40370 : 177.0) putative laccase, a member of laccase family of genes (17 members in Arabidopsis).; laccase 5 (LAC5); FUNCTIONS IN: laccase activity; INVOLVED IN: response to copper ion; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 12 (TAIR:AT5G05390.1); Has 10120 Blast hits to 8186 proteins in 1337 species: Archae - 37; Bacteria - 4008; Metazoa - 431; Fungi - 3685; Plants - 1575; Viruses - 0; Other Eukaryotes - 384 (source: NCBI BLink). & (reliability: 354.0) &  (original description: no original description)","protein_coding"
"PSME_00007588-RA","No alias","Pseudotsuga menziesii","(at5g48940 : 805.0) Leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: root, cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT3G24240.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p93194|rpk1_iponi : 440.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 1610.0) &  (original description: no original description)","protein_coding"
"PSME_00007923-RA","No alias","Pseudotsuga menziesii","(at5g19730 : 228.0) Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall, cytoplasm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G36710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o04887|pme2_citsi : 122.0) Pectinesterase-2 precursor (EC 3.1.1.11) (Pectin methylesterase) (PE) - Citrus sinensis (Sweet orange) & (reliability: 456.0) &  (original description: no original description)","protein_coding"
"PSME_00007999-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 454.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 908.0) &  (original description: no original description)","protein_coding"
"PSME_00008029-RA","No alias","Pseudotsuga menziesii","(at5g14230 : 258.0) CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink). & (reliability: 516.0) &  (original description: no original description)","protein_coding"
"PSME_00008153-RA","No alias","Pseudotsuga menziesii","(at5g46330 : 344.0) Encodes a leucine-rich repeat serine/threonine protein kinase that is expressed ubiquitously. FLS2 is involved in MAP kinase signalling relay involved in innate immunity. Essential in the perception of flagellin, a potent elicitor of the defense response.  FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB.; FLAGELLIN-SENSITIVE 2 (FLS2); FUNCTIONS IN: protein serine/threonine kinase activity, transmembrane receptor protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT4G20140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p93194|rpk1_iponi : 284.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 664.0) &  (original description: no original description)","protein_coding"
"PSME_00008186-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 180.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 360.0) &  (original description: no original description)","protein_coding"
"PSME_00008289-RA","No alias","Pseudotsuga menziesii","(at2g26070 : 291.0) Encodes a predicted membrane protein.  Similar sequences are widely distributed and conserved in plants, animals and protists but absent in fungi and prokaryotes.  The sequence has no known motifs and no biological function has been assigned in any species.  In Arabidopsis, it appears to be involved in the negative regulation of the response to ethylene, is localized to the Golgi and is a positive regulator of ETR1.; REVERSION-TO-ETHYLENE SENSITIVITY1 (RTE1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF778 (InterPro:IPR008496); BEST Arabidopsis thaliana protein match is: RTE1-homolog (TAIR:AT3G51040.3); Has 292 Blast hits to 292 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink). & (reliability: 582.0) &  (original description: no original description)","protein_coding"
"PSME_00008348-RA","No alias","Pseudotsuga menziesii","(at1g79740 : 140.0) hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 264.0) &  (original description: no original description)","protein_coding"
"PSME_00008368-RA","No alias","Pseudotsuga menziesii","(at1g15950 : 323.0) Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.; cinnamoyl coa reductase 1 (CCR1); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase (TAIR:AT1G80820.1); Has 11995 Blast hits to 11983 proteins in 1896 species: Archae - 218; Bacteria - 5371; Metazoa - 416; Fungi - 931; Plants - 2539; Viruses - 54; Other Eukaryotes - 2466 (source: NCBI BLink). & (p51108|dfra_maize : 177.0) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR) (Dihydrokaempferol 4-reductase) - Zea mays (Maize) & (reliability: 646.0) &  (original description: no original description)","protein_coding"
"PSME_00008381-RA","No alias","Pseudotsuga menziesii","(at5g36930 : 119.0) Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class), putative (TAIR:AT5G17680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 238.0) &  (original description: no original description)","protein_coding"
"PSME_00008440-RA","No alias","Pseudotsuga menziesii","(at2g04300 : 233.0) Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G21340.1); Has 164391 Blast hits to 122229 proteins in 4417 species: Archae - 101; Bacteria - 13737; Metazoa - 44157; Fungi - 9996; Plants - 77212; Viruses - 425; Other Eukaryotes - 18763 (source: NCBI BLink). & (q8l4h4|nork_medtr : 172.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 466.0) &  (original description: no original description)","protein_coding"
"PSME_00008475-RA","No alias","Pseudotsuga menziesii","(at1g22640 : 162.0) MYB-type transcription factor (MYB3) that represses phenylpropanoid biosynthesis gene expression; myb domain protein 3 (MYB3); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 6 (TAIR:AT4G09460.1); Has 9176 Blast hits to 8476 proteins in 489 species: Archae - 0; Bacteria - 0; Metazoa - 739; Fungi - 510; Plants - 6085; Viruses - 3; Other Eukaryotes - 1839 (source: NCBI BLink). & (p10290|mybc_maize : 156.0) Anthocyanin regulatory C1 protein - Zea mays (Maize) & (reliability: 324.0) &  (original description: no original description)","protein_coding"
"PSME_00008590-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00008693-RA","No alias","Pseudotsuga menziesii","(at3g47570 : 355.0) Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G47580.1); Has 213556 Blast hits to 133070 proteins in 4776 species: Archae - 194; Bacteria - 22980; Metazoa - 68117; Fungi - 10236; Plants - 86850; Viruses - 328; Other Eukaryotes - 24851 (source: NCBI BLink). & (p93194|rpk1_iponi : 291.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 710.0) &  (original description: no original description)","protein_coding"
"PSME_00008728-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00008742-RA","No alias","Pseudotsuga menziesii","(at5g27410 : 235.0) D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class IV (InterPro:IPR001544), Methyltransferase-16, putative (InterPro:IPR019410); BEST Arabidopsis thaliana protein match is: D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (TAIR:AT3G05190.1). & (reliability: 470.0) &  (original description: no original description)","protein_coding"
"PSME_00008836-RA","No alias","Pseudotsuga menziesii","(at5g14450 : 91.7) GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G26430.1); Has 3217 Blast hits to 3179 proteins in 111 species: Archae - 0; Bacteria - 82; Metazoa - 0; Fungi - 14; Plants - 3119; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). & (reliability: 178.0) &  (original description: no original description)","protein_coding"
"PSME_00008912-RA","No alias","Pseudotsuga menziesii","(at5g23230 : 197.0) nicotinamidase 2 (NIC2); CONTAINS InterPro DOMAIN/s: Isochorismatase-like (InterPro:IPR000868); BEST Arabidopsis thaliana protein match is: nicotinamidase 3 (TAIR:AT5G23220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 394.0) &  (original description: no original description)","protein_coding"
"PSME_00009018-RA","No alias","Pseudotsuga menziesii","(at3g11200 : 187.0) AL2 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.; alfin-like 2 (AL2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Protein of unknown function DUF3594 (InterPro:IPR021998), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: alfin-like 1 (TAIR:AT5G05610.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 374.0) &  (original description: no original description)","protein_coding"
"PSME_00009021-RA","No alias","Pseudotsuga menziesii","(at1g02850 : 271.0) beta glucosidase 11 (BGLU11); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 10 (TAIR:AT4G27830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p29736|myra_sinal : 191.0) Myrosinase MA1 (EC 3.2.1.147) (Sinigrinase) (Thioglucosidase) - Sinapis alba (White mustard) (Brassica hirta) & (reliability: 542.0) &  (original description: no original description)","protein_coding"
"PSME_00009243-RA","No alias","Pseudotsuga menziesii","(at4g36250 : 526.0) Encodes a putative aldehyde dehydrogenase. The gene is not responsive to osmotic stress and is expressed constitutively at a low level in plantlets and root cultures.; aldehyde dehydrogenase 3F1 (ALDH3F1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity; INVOLVED IN: cellular aldehyde metabolic process, oxidation reduction, metabolic process; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase NAD(P)-dependent (InterPro:IPR012394); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 3H1 (TAIR:AT1G44170.2); Has 51213 Blast hits to 51182 proteins in 2839 species: Archae - 470; Bacteria - 31264; Metazoa - 2305; Fungi - 2096; Plants - 995; Viruses - 0; Other Eukaryotes - 14083 (source: NCBI BLink). & (p17202|badh_spiol : 150.0) Betaine-aldehyde dehydrogenase, chloroplast precursor (EC 1.2.1.8) (BADH) - Spinacia oleracea (Spinach) & (reliability: 1052.0) &  (original description: no original description)","protein_coding"
"PSME_00009651-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00010291-RA","No alias","Pseudotsuga menziesii","(at3g16990 : 239.0) Haem oxygenase-like, multi-helical; CONTAINS InterPro DOMAIN/s: Haem oxygenase-like, multi-helical (InterPro:IPR016084), TENA/THI-4 protein/Coenzyme PQQ biosynthesis protein C (InterPro:IPR004305); Has 259 Blast hits to 259 proteins in 88 species: Archae - 23; Bacteria - 94; Metazoa - 0; Fungi - 34; Plants - 38; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink). & (q9swb6|pm36_soybn : 239.0) Seed maturation protein PM36 - Glycine max (Soybean) & (reliability: 478.0) &  (original description: no original description)","protein_coding"
"PSME_00010917-RA","No alias","Pseudotsuga menziesii","(at5g24300 : 256.0) SSI is a plastidial enzyme and crucial for the synthesis of normal amylopectin in the leaves of Arabidopsis. The absence of SSI results in a deficiency in the number of shorter glucans which in turn affect the formation and connection of the amylopectin clusters in starch.; SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1 (SSI1); FUNCTIONS IN: transferase activity, transferring glycosyl groups, starch synthase activity; INVOLVED IN: amylopectin biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: starch synthase 2 (TAIR:AT3G01180.1). & (q43654|ssy1_wheat : 256.0) Starch synthase 1, chloroplast precursor (EC 2.4.1.21) (SS I) (Starch synthase I-2) (SS I-2) - Triticum aestivum (Wheat) & (reliability: 512.0) &  (original description: no original description)","protein_coding"
"PSME_00011042-RA","No alias","Pseudotsuga menziesii","(at5g13290 : 246.0) Encodes a protein with predicted Ser/Thr kinase activity and membrane localization that is involved in the CLV3 signaling pathway that represses WUS expression in the meristem. Loss of function of CRN can suppress the phenotype caused by overexpression of CLV3. SOL2 isolated as a suppressor of root- specific overexpression of CLE19, a clavata3 like gene. sol2 partially suppresses the short root phenotype caused  by CLE19 overexpression. Mutant flowers have extra carpels.; CORYNE (CRN); FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: regulation of meristem growth, regulation of root meristem growth, meristem maintenance, regulation of flower development; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G31880.1); Has 55771 Blast hits to 55472 proteins in 1453 species: Archae - 44; Bacteria - 2468; Metazoa - 16951; Fungi - 4037; Plants - 25285; Viruses - 100; Other Eukaryotes - 6886 (source: NCBI BLink). & (p93194|rpk1_iponi : 147.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 492.0) &  (original description: no original description)","protein_coding"
"PSME_00011059-RA","No alias","Pseudotsuga menziesii","(at5g43860 : 273.0) Encodes a chlorophyllase, the first enzyme in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to chlorophyllide and phytol. AtCLH2 has a typical signal sequence for the chloroplast. Gene expression does not respond to methyljasmonate, a known promoter of senescence and chlorophyll degradation.; chlorophyllase 2 (CLH2); CONTAINS InterPro DOMAIN/s: Chlorophyllase-like (InterPro:IPR010821), Chlorophyllase, chloroplast (InterPro:IPR017395); BEST Arabidopsis thaliana protein match is: chlorophyllase 1 (TAIR:AT1G19670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q9mv14|clh1_citsi : 213.0) Chlorophyllase-1, chloroplast precursor (EC 3.1.1.14) (Chlorophyll-chlorophyllido hydrolase 1) (Chlase 1) - Citrus sinensis (Sweet orange) & (reliability: 546.0) &  (original description: no original description)","protein_coding"
"PSME_00011072-RA","No alias","Pseudotsuga menziesii","(at5g10980 : 145.0) Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q71h73|h33_vitvi : 145.0) Histone H3.3 - Vitis vinifera (Grape) & (reliability: 290.0) &  (original description: no original description)","protein_coding"
"PSME_00011097-RA","No alias","Pseudotsuga menziesii","(at2g36830 : 346.0) Encodes a tonoplast intrinsic protein, which functions as water channel. It has also been shown to be able to facilitate the transport of urea and hydrogen peroxide. Highly expressed in vascular tissues of the root, stem, cauline leaves and flowers but not in the apical meristems.; gamma tonoplast intrinsic protein (GAMMA-TIP); FUNCTIONS IN: water channel activity, urea transmembrane transporter activity; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: tonoplast intrinsic protein 2 (TAIR:AT3G26520.1); Has 11016 Blast hits to 10983 proteins in 2213 species: Archae - 82; Bacteria - 5238; Metazoa - 1501; Fungi - 451; Plants - 2489; Viruses - 0; Other Eukaryotes - 1255 (source: NCBI BLink). & (p50156|tip11_orysa : 328.0) Probable aquaporin TIP1.1 (Tonoplast intrinsic protein 1.1) (OsTIP1.1) (rTIP1) - Oryza sativa (Rice) & (reliability: 692.0) &  (original description: no original description)","protein_coding"
"PSME_00011269-RA","No alias","Pseudotsuga menziesii","(q7fmw4|pdr15_orysa : 576.0) Pleiotropic drug resistance protein 15 - Oryza sativa (Rice) & (at1g59870 : 571.0) ATP binding cassette transporter. Localized to the plasma membrane in uninfected cells. In infected leaves, the protein concentrated at  infection sites. Contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration in a salicylic acidñdependent manner. Required for mlo resistance.  Has Cd transporter activity (Cd2+ extrusion pump) and contributes to heavy metal resistance.; PENETRATION 3 (PEN3); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, cadmium ion transmembrane transporter activity; INVOLVED IN: in 9 processes; LOCATED IN: mitochondrion, plasma membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 7 (TAIR:AT1G15210.1); Has 392230 Blast hits to 282257 proteins in 3986 species: Archae - 7583; Bacteria - 315608; Metazoa - 9692; Fungi - 7346; Plants - 6702; Viruses - 4; Other Eukaryotes - 45295 (source: NCBI BLink). & (reliability: 1142.0) &  (original description: no original description)","protein_coding"
"PSME_00011303-RA","No alias","Pseudotsuga menziesii","(at1g44170 : 189.0) Encodes a protein similar to the aldehyde dehydrogenase cp-ADH from C.plantagineum. Constitutively expressed at low levels.; aldehyde dehydrogenase 3H1 (ALDH3H1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity; INVOLVED IN: response to desiccation, response to salt stress, response to abscisic acid stimulus; LOCATED IN: endoplasmic reticulum, plastid, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase NAD(P)-dependent (InterPro:IPR012394), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 3I1 (TAIR:AT4G34240.1); Has 53834 Blast hits to 53786 proteins in 2931 species: Archae - 469; Bacteria - 32921; Metazoa - 2418; Fungi - 2071; Plants - 990; Viruses - 0; Other Eukaryotes - 14965 (source: NCBI BLink). & (reliability: 378.0) &  (original description: no original description)","protein_coding"
"PSME_00011437-RA","No alias","Pseudotsuga menziesii","(at4g27670 : 139.0) chloroplast located small heat shock protein.; heat shock protein 21 (HSP21); CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT5G51440.1); Has 6158 Blast hits to 6158 proteins in 1414 species: Archae - 225; Bacteria - 3528; Metazoa - 23; Fungi - 170; Plants - 1466; Viruses - 0; Other Eukaryotes - 746 (source: NCBI BLink). & (p30222|hs22c_pethy : 139.0) Small heat shock protein, chloroplast precursor - Petunia hybrida (Petunia) & (reliability: 278.0) &  (original description: no original description)","protein_coding"
"PSME_00011530-RA","No alias","Pseudotsuga menziesii","(at1g72040 : 446.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: phosphotransferase activity, alcohol group as acceptor, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Deoxynucleoside kinase (InterPro:IPR002624); Has 2859 Blast hits to 2855 proteins in 704 species: Archae - 0; Bacteria - 1629; Metazoa - 493; Fungi - 0; Plants - 69; Viruses - 71; Other Eukaryotes - 597 (source: NCBI BLink). & (reliability: 892.0) &  (original description: no original description)","protein_coding"
"PSME_00011534-RA","No alias","Pseudotsuga menziesii","(at1g72040 : 223.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: phosphotransferase activity, alcohol group as acceptor, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Deoxynucleoside kinase (InterPro:IPR002624); Has 2859 Blast hits to 2855 proteins in 704 species: Archae - 0; Bacteria - 1629; Metazoa - 493; Fungi - 0; Plants - 69; Viruses - 71; Other Eukaryotes - 597 (source: NCBI BLink). & (reliability: 446.0) &  (original description: no original description)","protein_coding"
"PSME_00011548-RA","No alias","Pseudotsuga menziesii","(at4g19970 : 530.0) CONTAINS InterPro DOMAIN/s: Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT5G44820.1); Has 801 Blast hits to 466 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 750; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). & (reliability: 1060.0) &  (original description: no original description)","protein_coding"
"PSME_00011586-RA","No alias","Pseudotsuga menziesii","(at1g08840 : 840.0) embryo defective 2411 (emb2411); FUNCTIONS IN: ATP-dependent DNA helicase activity, DNA binding, ATP binding; INVOLVED IN: DNA replication, embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA helicase, UvrD/REP type (InterPro:IPR000212), DNA replication factor Dna2 (InterPro:IPR014808); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1). & (reliability: 1680.0) &  (original description: no original description)","protein_coding"
"PSME_00011996-RA","No alias","Pseudotsuga menziesii","(at1g61720 : 302.0) Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.; BANYULS (BAN); FUNCTIONS IN: oxidoreductase activity, anthocyanidin reductase activity; INVOLVED IN: negative regulation of flavonoid biosynthetic process; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: C globular stage, seed development stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: dihydroflavonol 4-reductase (TAIR:AT5G42800.1); Has 9654 Blast hits to 9641 proteins in 1549 species: Archae - 92; Bacteria - 3374; Metazoa - 271; Fungi - 951; Plants - 2463; Viruses - 15; Other Eukaryotes - 2488 (source: NCBI BLink). & (p51110|dfra_vitvi : 279.0) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR) (Dihydrokaempferol 4-reductase) - Vitis vinifera (Grape) & (reliability: 604.0) &  (original description: no original description)","protein_coding"
"PSME_00012163-RA","No alias","Pseudotsuga menziesii","(at5g67270 : 191.0) encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.; end binding protein 1C (EB1C); CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), EB1, C-terminal (InterPro:IPR004953); BEST Arabidopsis thaliana protein match is: microtubule end binding protein EB1A (TAIR:AT3G47690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 382.0) &  (original description: no original description)","protein_coding"
"PSME_00012196-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 631.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 625.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1262.0) &  (original description: no original description)","protein_coding"
"PSME_00012324-RA","No alias","Pseudotsuga menziesii","(at5g47790 : 366.0) SMAD/FHA domain-containing protein ; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: SMAD/FHA domain-containing protein  (TAIR:AT5G38840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 732.0) &  (original description: no original description)","protein_coding"
"PSME_00012444-RA","No alias","Pseudotsuga menziesii","(at1g14700 : 379.0) purple acid phosphatase 3 (PAP3); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 8 (TAIR:AT2G01890.1); Has 1092 Blast hits to 1082 proteins in 272 species: Archae - 0; Bacteria - 250; Metazoa - 335; Fungi - 8; Plants - 191; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink). & (reliability: 758.0) &  (original description: no original description)","protein_coding"
"PSME_00012453-RA","No alias","Pseudotsuga menziesii","(at5g39740 : 175.0) Encodes a ribosomal protein RPL5B that is involved in ribosome biogenesis and plays a role in organ size control by promoting cell proliferation and preventing compensation in normal leaf development.; ribosomal protein L5 B (RPL5B); FUNCTIONS IN: structural constituent of ribosome, 5S rRNA binding; INVOLVED IN: cell proliferation, translation, ribosome biogenesis, leaf morphogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L5, eukaryotic (InterPro:IPR005485), Ribosomal protein L18/L5 (InterPro:IPR005484); BEST Arabidopsis thaliana protein match is: ribosomal protein L5 (TAIR:AT3G25520.1). & (q6unt2|rl5_cucsa : 175.0) 60S ribosomal protein L5 - Cucumis sativus (Cucumber) & (reliability: 350.0) &  (original description: no original description)","protein_coding"
"PSME_00012631-RA","No alias","Pseudotsuga menziesii","(at5g19320 : 350.0) Encodes RAN GTPase activating protein 2. The protein is localized to the nuclear envelope during interphase.; RAN GTPase activating protein 2 (RANGAP2); FUNCTIONS IN: RAN GTPase activator activity; INVOLVED IN: response to salt stress, nucleocytoplasmic transport; LOCATED IN: nuclear envelope, endoplasmic reticulum, plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RAN GTPase activating protein 1 (TAIR:AT3G63130.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 700.0) &  (original description: no original description)","protein_coding"
"PSME_00012902-RA","No alias","Pseudotsuga menziesii","(at3g05740 : 416.0) RECQ helicase l1 (RECQI1); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DNA helicase (RECQl4A) (TAIR:AT1G10930.1); Has 22913 Blast hits to 22836 proteins in 2673 species: Archae - 358; Bacteria - 13443; Metazoa - 2936; Fungi - 2132; Plants - 1261; Viruses - 9; Other Eukaryotes - 2774 (source: NCBI BLink). & (reliability: 832.0) &  (original description: no original description)","protein_coding"
"PSME_00013232-RA","No alias","Pseudotsuga menziesii","(at4g20140 : 303.0) Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase.  GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis.; GASSHO1 (GSO1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, embryo development, epidermis development; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT5G44700.1); Has 301150 Blast hits to 144127 proteins in 5007 species: Archae - 193; Bacteria - 28594; Metazoa - 96322; Fungi - 11667; Plants - 129816; Viruses - 411; Other Eukaryotes - 34147 (source: NCBI BLink). & (p93194|rpk1_iponi : 239.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 606.0) &  (original description: no original description)","protein_coding"
"PSME_00013469-RA","No alias","Pseudotsuga menziesii","(at4g21410 : 440.0) Encodes a cysteine-rich receptor-like protein kinase.; cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (CRK29); FUNCTIONS IN: kinase activity; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 28 (TAIR:AT4G21400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q8l4h4|nork_medtr : 215.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 880.0) &  (original description: no original description)","protein_coding"
"PSME_00013495-RA","No alias","Pseudotsuga menziesii","(at1g25450 : 240.0) Encodes KCS5, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).; 3-ketoacyl-CoA synthase 5 (KCS5); FUNCTIONS IN: fatty acid elongase activity; INVOLVED IN: in 6 processes; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 6 (TAIR:AT1G68530.1); Has 4033 Blast hits to 4019 proteins in 981 species: Archae - 0; Bacteria - 1511; Metazoa - 0; Fungi - 25; Plants - 2349; Viruses - 0; Other Eukaryotes - 148 (source: NCBI BLink). & (reliability: 432.0) &  (original description: no original description)","protein_coding"
"PSME_00013497-RA","No alias","Pseudotsuga menziesii","(at5g01340 : 166.0) Mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT2G37890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 332.0) &  (original description: no original description)","protein_coding"
"PSME_00013647-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 764.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 760.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1528.0) &  (original description: no original description)","protein_coding"
"PSME_00013785-RA","No alias","Pseudotsuga menziesii","(at5g23290 : 97.8) prefoldin 5 (PFD5); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin alpha-like (InterPro:IPR004127), Prefoldin (InterPro:IPR009053), Prefoldin alpha subunit (InterPro:IPR011599); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 195.6) &  (original description: no original description)","protein_coding"
"PSME_00013870-RA","No alias","Pseudotsuga menziesii","(at2g31350 : 142.0) Encodes a mitochondrial glyoxalase 2 that can accommodate a number of different metal centers and with the predominant metal center being Fe(III)Zn(II).; glyoxalase 2-5 (GLX2-5); CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279), Hydroxyacylglutathione hydrolase (InterPro:IPR017782); BEST Arabidopsis thaliana protein match is: glyoxalase 2-4 (TAIR:AT1G06130.2); Has 16139 Blast hits to 16138 proteins in 2537 species: Archae - 414; Bacteria - 10534; Metazoa - 489; Fungi - 336; Plants - 226; Viruses - 0; Other Eukaryotes - 4140 (source: NCBI BLink). & (reliability: 284.0) &  (original description: no original description)","protein_coding"
"PSME_00013872-RA","No alias","Pseudotsuga menziesii","(at3g53030 : 304.0) Encodes a protein kinase SRPK4 that specifically targets Arabidopsis Ser/Arg-rich (SR) slicing factors involved in RNA metabolism.  In vitro kinase assay showed that SRPK4 phosphorylates the SR protein RSp31.; ser/arg-rich protein kinase 4 (SRPK4); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: response to oxidative stress, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G44850.1); Has 38460 Blast hits to 29477 proteins in 1034 species: Archae - 2; Bacteria - 1392; Metazoa - 15648; Fungi - 7270; Plants - 6510; Viruses - 16; Other Eukaryotes - 7622 (source: NCBI BLink). & (reliability: 608.0) &  (original description: no original description)","protein_coding"
"PSME_00013889-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00014060-RA","No alias","Pseudotsuga menziesii","(at2g29200 : 204.0) Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.; pumilio 1 (PUM1); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940), Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 3 (TAIR:AT2G29140.1); Has 3905 Blast hits to 1986 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 808; Fungi - 1312; Plants - 896; Viruses - 0; Other Eukaryotes - 889 (source: NCBI BLink). & (reliability: 408.0) &  (original description: no original description)","protein_coding"
"PSME_00014679-RA","No alias","Pseudotsuga menziesii","(at5g19730 : 298.0) Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall, cytoplasm; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G36710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o04886|pme1_citsi : 193.0) Pectinesterase-1 precursor (EC 3.1.1.11) (Pectin methylesterase) (PE) - Citrus sinensis (Sweet orange) & (reliability: 596.0) &  (original description: no original description)","protein_coding"
"PSME_00014681-RA","No alias","Pseudotsuga menziesii","(at2g21610 : 163.0) pectinesterase 11 (PE11); FUNCTIONS IN: pectinesterase activity; INVOLVED IN: N-terminal protein myristoylation, cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G19730.1); Has 2459 Blast hits to 2412 proteins in 316 species: Archae - 8; Bacteria - 608; Metazoa - 1; Fungi - 201; Plants - 1615; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). & (o04886|pme1_citsi : 105.0) Pectinesterase-1 precursor (EC 3.1.1.11) (Pectin methylesterase) (PE) - Citrus sinensis (Sweet orange) & (reliability: 326.0) &  (original description: no original description)","protein_coding"
"PSME_00014701-RA","No alias","Pseudotsuga menziesii","(at3g46040 : 196.0) Regulated by TCP20.; ribosomal protein S15A D (RPS15AD); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8 (InterPro:IPR000630); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8 family protein (TAIR:AT5G59850.1); Has 3503 Blast hits to 3503 proteins in 1362 species: Archae - 277; Bacteria - 1878; Metazoa - 431; Fungi - 223; Plants - 255; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink). & (q9at34|rs15a_dauca : 195.0) 40S ribosomal protein S15a - Daucus carota (Carrot) & (reliability: 392.0) &  (original description: no original description)","protein_coding"
"PSME_00014707-RA","No alias","Pseudotsuga menziesii","(at2g38290 : 475.0) encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively.; ammonium transporter 2 (AMT2); FUNCTIONS IN: ammonium transmembrane transporter activity, high affinity secondary active ammonium transmembrane transporter activity; INVOLVED IN: ammonium transport, response to nematode, cellular response to nitrogen starvation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ammonium transporter (InterPro:IPR001905), Blood group Rhesus C/E/D polypeptide (InterPro:IPR002229), Ammonium transporter, conserved site (InterPro:IPR018047); BEST Arabidopsis thaliana protein match is: ammonium transporter 1;2 (TAIR:AT1G64780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 950.0) &  (original description: no original description)","protein_coding"
"PSME_00014898-RA","No alias","Pseudotsuga menziesii","(at2g33150 : 243.0) Encodes an organellar (peroxisome, glyoxysome) 3-ketoacyl-CoA thiolase, involved in fatty acid b-oxidation during germination and subsequent seedling growth. Mutants have defects in glyoxysomal fatty acid beta-oxidation. EC2.3.1.16 thiolase.; peroxisomal 3-ketoacyl-CoA thiolase 3 (PKT3); FUNCTIONS IN: acetyl-CoA C-acyltransferase activity; INVOLVED IN: fatty acid beta-oxidation, jasmonic acid biosynthetic process, response to wounding, fatty acid oxidation, glyoxysome organization; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase (InterPro:IPR002155), Thiolase, active site (InterPro:IPR020610), Thiolase, N-terminal (InterPro:IPR020616), Thiolase, conserved site (InterPro:IPR020613), Thiolase, C-terminal (InterPro:IPR020617), Thiolase-like, subgroup (InterPro:IPR016038), Thiolase-like (InterPro:IPR016039), Thiolase, acyl-enzyme intermediate active site (InterPro:IPR020615); BEST Arabidopsis thaliana protein match is: peroxisomal 3-ketoacyl-CoA thiolase  4 (TAIR:AT1G04710.1); Has 22382 Blast hits to 22371 proteins in 2261 species: Archae - 414; Bacteria - 14116; Metazoa - 985; Fungi - 655; Plants - 282; Viruses - 0; Other Eukaryotes - 5930 (source: NCBI BLink). & (reliability: 486.0) &  (original description: no original description)","protein_coding"
"PSME_00015402-RA","No alias","Pseudotsuga menziesii","(at2g41705 : 270.0) camphor resistance CrcB family protein; CONTAINS InterPro DOMAIN/s: Camphor resistance CrcB protein (InterPro:IPR003691); Has 1596 Blast hits to 1594 proteins in 702 species: Archae - 22; Bacteria - 1268; Metazoa - 2; Fungi - 87; Plants - 37; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink). & (reliability: 540.0) &  (original description: no original description)","protein_coding"
"PSME_00015836-RA","No alias","Pseudotsuga menziesii","(at2g05920 : 420.0) Subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT5G67360.1); Has 7371 Blast hits to 6472 proteins in 1023 species: Archae - 222; Bacteria - 3849; Metazoa - 147; Fungi - 727; Plants - 1890; Viruses - 0; Other Eukaryotes - 536 (source: NCBI BLink). & (reliability: 840.0) &  (original description: no original description)","protein_coding"
"PSME_00015857-RA","No alias","Pseudotsuga menziesii","(at4g32700 : 177.0) Encodes a homolog of Drosophila MUS308 and mammalian DNA polymerase, which prevent spontaneous or DNA damage-induced production of DNA double strand breaks. Two conserved functional domains: an N-terminal superfamily II DNA/RNA helicase domain and a C-terminal prokaryotic-type DNA polymerase I domain. Required for regulated cell division and differentiation in meristems. Mutant plants show morphological defects, such as short roots, serrated leaves, and fasciation, as well as defective patterns of cell division and differentiation in the meristem. Mutant plants had 2.5 to 4.5-fold higher expression of ATGR1, ATBRCA1 and RAD51 genes. TEB is required for normal  progression of DNA replication and for correct expression of genes during development.; helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding; FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of gene expression, DNA replication, DNA recombination, photomorphogenesis; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA-directed DNA polymerase, family A, palm domain (InterPro:IPR001098), DNA/RNA helicase, C-terminal (InterPro:IPR001650), DNA polymerase A domain (InterPro:IPR002298), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT2G42270.1); Has 17628 Blast hits to 16579 proteins in 2941 species: Archae - 600; Bacteria - 7507; Metazoa - 1254; Fungi - 1190; Plants - 590; Viruses - 412; Other Eukaryotes - 6075 (source: NCBI BLink). & (p42210|aspr_horvu : 92.8) Phytepsin precursor (EC 3.4.23.40) (Aspartic proteinase) [Contains: Phytepsin 32 kDa subunit; Phytepsin 29 kDa subunit; Phytepsin 16 kDa subunit; Phytepsin 11 kDa subunit] - Hordeum vulgare (Barley) & (reliability: 354.0) &  (original description: no original description)","protein_coding"
"PSME_00015873-RA","No alias","Pseudotsuga menziesii","(at1g09680 : 507.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1); Has 56278 Blast hits to 14858 proteins in 304 species: Archae - 3; Bacteria - 59; Metazoa - 821; Fungi - 925; Plants - 52616; Viruses - 0; Other Eukaryotes - 1854 (source: NCBI BLink). & (q76c99|rf1_orysa : 257.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1014.0) &  (original description: no original description)","protein_coding"
"PSME_00015881-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00015956-RA","No alias","Pseudotsuga menziesii","(at5g23120 : 232.0) encodes a stability and/or assembly factor of photosystem II; HIGH CHLOROPHYLL FLUORESCENCE 136 (HCF136); INVOLVED IN: response to cadmium ion, plastid organization, protein complex assembly; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: BNR repeat (InterPro:IPR002860), Photosystem II stability/assembly factor, HCF136 (InterPro:IPR016705), Twin-arginine translocation pathway, signal sequence (InterPro:IPR006311); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q5z5a8|p2saf_orysa : 229.0) Photosystem II stability/assembly factor HCF136, chloroplast precursor - Oryza sativa (Rice) & (reliability: 464.0) &  (original description: no original description)","protein_coding"
"PSME_00016262-RA","No alias","Pseudotsuga menziesii","(at4g33260 : 301.0) putative cdc20 protein (CDC20.2); CDC20.2; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT4G33270.1). & (reliability: 600.0) &  (original description: no original description)","protein_coding"
"PSME_00016330-RA","No alias","Pseudotsuga menziesii","(at1g21580 : 81.3) Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); Has 6412 Blast hits to 4180 proteins in 441 species: Archae - 2; Bacteria - 615; Metazoa - 1993; Fungi - 936; Plants - 1540; Viruses - 149; Other Eukaryotes - 1177 (source: NCBI BLink). & (reliability: 162.6) &  (original description: no original description)","protein_coding"
"PSME_00016337-RA","No alias","Pseudotsuga menziesii","(at2g02240 : 189.0) maternal effect embryo arrest 66 (MEE66); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: phloem protein 2-B2 (TAIR:AT2G02250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 378.0) &  (original description: no original description)","protein_coding"
"PSME_00016515-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 462.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 924.0) &  (original description: no original description)","protein_coding"
"PSME_00016544-RA","No alias","Pseudotsuga menziesii","(at2g42270 : 223.0) U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2); Has 20124 Blast hits to 12378 proteins in 1898 species: Archae - 1780; Bacteria - 8009; Metazoa - 2781; Fungi - 2333; Plants - 1088; Viruses - 52; Other Eukaryotes - 4081 (source: NCBI BLink). & (p14133|aso_cucsa : 81.3) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase) (ASO) - Cucumis sativus (Cucumber) & (reliability: 446.0) &  (original description: no original description)","protein_coding"
"PSME_00016562-RA","No alias","Pseudotsuga menziesii","(at4g00620 : 300.0) Amino acid dehydrogenase family protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: folic acid and derivative biosynthetic process, metabolic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain (InterPro:IPR020631), Tetrahydrofolate dehydrogenase/cyclohydrolase (InterPro:IPR000672), NAD(P)-binding domain (InterPro:IPR016040), Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site (InterPro:IPR020867), Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain (InterPro:IPR020630); BEST Arabidopsis thaliana protein match is: Amino acid dehydrogenase family protein (TAIR:AT4G00600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 600.0) &  (original description: no original description)","protein_coding"
"PSME_00016878-RA","No alias","Pseudotsuga menziesii","(at4g13430 : 211.0) Encodes methylthioalkylmalate isomerase.; isopropyl malate isomerase large subunit 1 (IIL1); FUNCTIONS IN: lyase activity, intramolecular transferase activity, transferring hydroxy groups; INVOLVED IN: glucosinolate biosynthetic process, response to cadmium ion, metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha (InterPro:IPR001030), Homoaconitase/3-isopropylmalate dehydratase, small/large subunit (InterPro:IPR015936), Homoaconitase/3-isopropylmalate dehydratase, large subunit, subgroup (InterPro:IPR006251), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 (InterPro:IPR015932), Aconitase-like core (InterPro:IPR015937), Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 (InterPro:IPR015931); BEST Arabidopsis thaliana protein match is: aconitase 2 (TAIR:AT4G26970.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 422.0) &  (original description: no original description)","protein_coding"
"PSME_00017075-RA","No alias","Pseudotsuga menziesii","(at1g70520 : 369.0) Encodes a cysteine-rich receptor-like protein kinase.; cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (CRK2); FUNCTIONS IN: kinase activity; INVOLVED IN: response to ozone; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (TAIR:AT5G40380.1); Has 123193 Blast hits to 121713 proteins in 4855 species: Archae - 110; Bacteria - 13886; Metazoa - 45515; Fungi - 10581; Plants - 34413; Viruses - 473; Other Eukaryotes - 18215 (source: NCBI BLink). & (q8lpb4|pskr_dauca : 218.0) Phytosulfokine receptor precursor (EC 2.7.11.1) (Phytosulfokine LRR receptor kinase) - Daucus carota (Carrot) & (reliability: 738.0) &  (original description: no original description)","protein_coding"
"PSME_00017096-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00017546-RA","No alias","Pseudotsuga menziesii","(at3g10870 : 113.0) Encodes a methyl IAA esterase. Methyl IAA is believed to be an inactive form of auxin that needs to be demethylated to exert a biological effect. MES17 does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. This gene is expressed in several tissues of seedlings and adult plants, with a higher relative level of expression in the seedling shoot apex and the adult stem.; methyl esterase 17 (MES17); CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: methyl esterase 18 (TAIR:AT5G58310.1); Has 1383 Blast hits to 1383 proteins in 290 species: Archae - 0; Bacteria - 591; Metazoa - 1; Fungi - 15; Plants - 599; Viruses - 2; Other Eukaryotes - 175 (source: NCBI BLink). & (reliability: 226.0) &  (original description: no original description)","protein_coding"
"PSME_00017683-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00017733-RA","No alias","Pseudotsuga menziesii","(at2g44580 : 183.0) zinc ion binding; CONTAINS InterPro DOMAIN/s: Sister chromatid cohesion protein DCC1 (InterPro:IPR019128); Has 214 Blast hits to 211 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 49; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 366.0) &  (original description: no original description)","protein_coding"
"PSME_00017977-RA","No alias","Pseudotsuga menziesii","(at5g11900 : 220.0) Translation initiation factor SUI1 family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Density-regulated protein DRP1 (InterPro:IPR005873); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 440.0) &  (original description: no original description)","protein_coding"
"PSME_00018329-RA","No alias","Pseudotsuga menziesii","(at5g14230 : 271.0) CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink). & (reliability: 542.0) &  (original description: no original description)","protein_coding"
"PSME_00018502-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 587.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 582.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1174.0) &  (original description: no original description)","protein_coding"
"PSME_00018555-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00018556-RA","No alias","Pseudotsuga menziesii","(at4g25840 : 224.0) glycerol-3-phosphatase 1 (GPP1); FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G57440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 448.0) &  (original description: no original description)","protein_coding"
"PSME_00018685-RA","No alias","Pseudotsuga menziesii","(at5g25050 : 299.0) Major facilitator superfamily protein; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G25040.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 598.0) &  (original description: no original description)","protein_coding"
"PSME_00018751-RA","No alias","Pseudotsuga menziesii","(at5g47790 : 308.0) SMAD/FHA domain-containing protein ; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: SMAD/FHA domain-containing protein  (TAIR:AT5G38840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 616.0) &  (original description: no original description)","protein_coding"
"PSME_00018821-RA","No alias","Pseudotsuga menziesii","(p13046|prr1_tobac : 142.0) Pathogenesis-related protein R major form precursor (Thaumatin-like protein E22) - Nicotiana tabacum (Common tobacco) & (at1g19320 : 136.0) Pathogenesis-related thaumatin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: thaumatin-like protein 3 (TAIR:AT1G75030.1); Has 1611 Blast hits to 1588 proteins in 180 species: Archae - 0; Bacteria - 48; Metazoa - 52; Fungi - 78; Plants - 1416; Viruses - 5; Other Eukaryotes - 12 (source: NCBI BLink). & (reliability: 272.0) &  (original description: no original description)","protein_coding"
"PSME_00018869-RA","No alias","Pseudotsuga menziesii","(at3g59845 : 89.4) Zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Zinc-binding dehydrogenase family protein (TAIR:AT5G16990.1); Has 14802 Blast hits to 14786 proteins in 1767 species: Archae - 105; Bacteria - 8308; Metazoa - 744; Fungi - 1047; Plants - 497; Viruses - 0; Other Eukaryotes - 4101 (source: NCBI BLink). & (reliability: 178.8) &  (original description: no original description)","protein_coding"
"PSME_00019048-RA","No alias","Pseudotsuga menziesii","(at2g35615 : 119.0) Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G31450.1); Has 2848 Blast hits to 2831 proteins in 280 species: Archae - 0; Bacteria - 0; Metazoa - 342; Fungi - 487; Plants - 1854; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink). & (reliability: 220.0) &  (original description: no original description)","protein_coding"
"PSME_00019078-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00019125-RA","No alias","Pseudotsuga menziesii","(p50160|ts2_maize : 170.0) Sex determination protein tasselseed-2 - Zea mays (Maize) & (at3g26770 : 155.0) NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G26760.1); Has 124722 Blast hits to 124477 proteins in 3643 species: Archae - 1005; Bacteria - 80894; Metazoa - 6366; Fungi - 6864; Plants - 2737; Viruses - 9; Other Eukaryotes - 26847 (source: NCBI BLink). & (reliability: 292.0) &  (original description: no original description)","protein_coding"
"PSME_00019140-RA","No alias","Pseudotsuga menziesii","(at1g08570 : 113.0) Encodes a member of the thioredoxin family protein.  Located in the chloroplast.  Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate   dehydrogenase.; atypical CYS  HIS rich thioredoxin 4 (ACHT4); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast membrane, chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: atypical CYS  HIS rich thioredoxin 3 (TAIR:AT2G33270.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 226.0) &  (original description: no original description)","protein_coding"
"PSME_00019141-RA","No alias","Pseudotsuga menziesii","(at3g51740 : 96.7) encodes a leucine-repeat receptor kinase expressed in inflorescence meristem. Locus association was made from performing sequence analysis with IMK3 (MRLK) whose locus association was provided by the authors.; inflorescence meristem receptor-like kinase 2 (IMK2); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cell wall, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: meristematic receptor-like  kinase (TAIR:AT3G56100.1); Has 188484 Blast hits to 128319 proteins in 4033 species: Archae - 136; Bacteria - 17470; Metazoa - 63423; Fungi - 9529; Plants - 75715; Viruses - 437; Other Eukaryotes - 21774 (source: NCBI BLink). & (p93194|rpk1_iponi : 83.2) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 193.4) &  (original description: no original description)","protein_coding"
"PSME_00019153-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00019243-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 308.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 616.0) &  (original description: no original description)","protein_coding"
"PSME_00019480-RA","No alias","Pseudotsuga menziesii","(at5g02010 : 310.0) Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato.  Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.; RHO guanyl-nucleotide exchange factor 7 (ROPGEF7); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: ROP guanine nucleotide exchange factor 5 (TAIR:AT5G05940.1); Has 310 Blast hits to 307 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 308; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). & (reliability: 620.0) &  (original description: no original description)","protein_coding"
"PSME_00019492-RA","No alias","Pseudotsuga menziesii","(p24631|hsp21_maize : 100.0) 17.5 kDa class II heat shock protein - Zea mays (Maize) & (at5g12030 : 89.7) Encodes a cytosolic small heat shock protein with chaperone activity that is induced by heat and osmotic stress and is also expressed late in seed development.; heat shock protein 17.6A (HSP17.6A); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding, response to high light intensity, response to hydrogen peroxide, response to heat, hyperosmotic response; LOCATED IN: cytosol; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: 17.6 kDa class II heat shock protein (TAIR:AT5G12020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 179.4) &  (original description: no original description)","protein_coding"
"PSME_00019566-RA","No alias","Pseudotsuga menziesii","(at4g19450 : 330.0) Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G45275.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 660.0) &  (original description: no original description)","protein_coding"
"PSME_00019617-RA","No alias","Pseudotsuga menziesii","(at5g22020 : 510.0) Calcium-dependent phosphotriesterase superfamily protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Strictosidine synthase (InterPro:IPR004141), Strictosidine synthase, conserved region (InterPro:IPR018119), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: strictosidine synthase-like 3 (TAIR:AT1G08470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p18417|stsy_catro : 162.0) Strictosidine synthase precursor (EC 4.3.3.2) - Catharanthus roseus (Rosy periwinkle) (Madagascar periwinkle) & (reliability: 1020.0) &  (original description: no original description)","protein_coding"
"PSME_00019652-RA","No alias","Pseudotsuga menziesii","(at3g49500 : 233.0) Encodes RNA-dependent RNA polymerase. Involved in trans-acting siRNA and other siRNA biogenesis. Required for post-transcriptional gene silencing and natural virus resistance.; RNA-dependent RNA polymerase 6 (RDR6); CONTAINS InterPro DOMAIN/s: RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855); BEST Arabidopsis thaliana protein match is: RNA-dependent RNA polymerase 1 (TAIR:AT1G14790.1); Has 633 Blast hits to 609 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 73; Fungi - 284; Plants - 204; Viruses - 2; Other Eukaryotes - 70 (source: NCBI BLink). & (reliability: 466.0) &  (original description: no original description)","protein_coding"
"PSME_00019679-RA","No alias","Pseudotsuga menziesii","(p59287|cass_ricco : 251.0) Casbene synthase, chloroplast precursor (EC 4.2.3.8) - Ricinus communis (Castor bean) & (at4g16730 : 232.0) In the Col ecotype, no functional protein is encoded at this locus due to the presence of a two-base (AT) insertion 184 nucleotides  downstream of the start codon leading to a  frame shift and premature translational termination. However, in the Ws ecotype, a functional terpene synthase that localizes to the chloroplast is encoded at this locus. It can catalyze the synthesis of (E)-beta-ocimene and (E,E)-alpha farnesene in vitro, but, it has more activity as an (E)-beta-ocimene synthase activity in vivo. This may reflect the greater availability of the GPP precursor of (E)-beta-ocimene than of the FPP precursor of (E,E)-alpha-farnesene in the chloroplasts where the Ws TPS02 is present.; terpene synthase 02 (TPS02); INVOLVED IN: metabolic process; EXPRESSED IN: sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase 03 (TAIR:AT4G16740.1); Has 1736 Blast hits to 1706 proteins in 177 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1730; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (reliability: 464.0) &  (original description: no original description)","protein_coding"
"PSME_00019807-RA","No alias","Pseudotsuga menziesii","(at5g05390 : 589.0) putative laccase,  a member of laccase family of genes (17 members in Arabidopsis).; laccase 12 (LAC12); FUNCTIONS IN: laccase activity; INVOLVED IN: oxidation reduction, lignin catabolic process; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 5 (TAIR:AT2G40370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p14133|aso_cucsa : 227.0) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase) (ASO) - Cucumis sativus (Cucumber) & (reliability: 1178.0) &  (original description: no original description)","protein_coding"
"PSME_00019810-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00019890-RA","No alias","Pseudotsuga menziesii","(at1g72680 : 84.0) cinnamyl-alcohol dehydrogenase (CAD1); FUNCTIONS IN: oxidoreductase activity, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, zinc ion binding, cofactor binding; INVOLVED IN: lignin biosynthetic process; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (InterPro:IPR006140), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: cinnamyl alcohol dehydrogenase homolog 3 (TAIR:AT2G21890.1); Has 36986 Blast hits to 36967 proteins in 3073 species: Archae - 711; Bacteria - 24167; Metazoa - 1364; Fungi - 2774; Plants - 3348; Viruses - 3; Other Eukaryotes - 4619 (source: NCBI BLink). & (reliability: 168.0) &  (original description: no original description)","protein_coding"
"PSME_00019956-RA","No alias","Pseudotsuga menziesii","(at1g59870 : 210.0) ATP binding cassette transporter. Localized to the plasma membrane in uninfected cells. In infected leaves, the protein concentrated at  infection sites. Contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration in a salicylic acidñdependent manner. Required for mlo resistance.  Has Cd transporter activity (Cd2+ extrusion pump) and contributes to heavy metal resistance.; PENETRATION 3 (PEN3); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, cadmium ion transmembrane transporter activity; INVOLVED IN: in 9 processes; LOCATED IN: mitochondrion, plasma membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 7 (TAIR:AT1G15210.1); Has 392230 Blast hits to 282257 proteins in 3986 species: Archae - 7583; Bacteria - 315608; Metazoa - 9692; Fungi - 7346; Plants - 6702; Viruses - 4; Other Eukaryotes - 45295 (source: NCBI BLink). & (q8gu88|pdr7_orysa : 208.0) Putative pleiotropic drug resistance protein 7 - Oryza sativa (Rice) & (reliability: 420.0) &  (original description: no original description)","protein_coding"
"PSME_00020079-RA","No alias","Pseudotsuga menziesii","(at3g22060 : 97.1) contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domain; Receptor-like protein kinase-related family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: cell wall, vacuole; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF26) (TAIR:AT3G58310.1); Has 1682 Blast hits to 1490 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1682; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 193.4) &  (original description: no original description)","protein_coding"
"PSME_00020202-RA","No alias","Pseudotsuga menziesii","(at3g26100 : 284.0) Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G15430.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 568.0) &  (original description: no original description)","protein_coding"
"PSME_00020294-RA","No alias","Pseudotsuga menziesii","(at5g14230 : 539.0) CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink). & (reliability: 1078.0) &  (original description: no original description)","protein_coding"
"PSME_00020577-RA","No alias","Pseudotsuga menziesii","(at1g33170 : 134.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G10440.1); Has 1106 Blast hits to 1098 proteins in 101 species: Archae - 5; Bacteria - 135; Metazoa - 1; Fungi - 2; Plants - 950; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). & (reliability: 268.0) &  (original description: no original description)","protein_coding"
"PSME_00020722-RA","No alias","Pseudotsuga menziesii","(at1g59540 : 576.0) Encodes a kinesin-like protein.; ZCF125; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G10180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p46869|fla10_chlre : 265.0) Kinesin-like protein FLA10 (Protein KHP1) - Chlamydomonas reinhardtii & (reliability: 1152.0) &  (original description: no original description)","protein_coding"
"PSME_00020851-RA","No alias","Pseudotsuga menziesii","(p51110|dfra_vitvi : 234.0) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR) (Dihydrokaempferol 4-reductase) - Vitis vinifera (Grape) & (at5g42800 : 221.0) dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins.; dihydroflavonol 4-reductase (DFR); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G45400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 442.0) &  (original description: no original description)","protein_coding"
"PSME_00020947-RA","No alias","Pseudotsuga menziesii","(at3g47110 : 620.0) Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: EF-TU receptor (TAIR:AT5G20480.1); Has 201898 Blast hits to 124021 proteins in 4668 species: Archae - 159; Bacteria - 19385; Metazoa - 64482; Fungi - 8819; Plants - 85595; Viruses - 264; Other Eukaryotes - 23194 (source: NCBI BLink). & (p93194|rpk1_iponi : 426.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 1240.0) &  (original description: no original description)","protein_coding"
"PSME_00020980-RA","No alias","Pseudotsuga menziesii","(at5g48740 : 429.0) Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G67720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q8l4h4|nork_medtr : 338.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 858.0) &  (original description: no original description)","protein_coding"
"PSME_00020990-RA","No alias","Pseudotsuga menziesii","(at1g74260 : 505.0) Encodes formylglycinamidine ribonucleotide synthase an enzyme involved in de novo purine biosynthesis. PUR4 is localizes to the chloroplast and mitochondria. Loss of PUR4 function affects male but not female gametophyte development.; purine biosynthesis 4 (PUR4); FUNCTIONS IN: phosphoribosylformylglycinamidine synthase activity, catalytic activity, ATP binding; INVOLVED IN: microgametogenesis, pollen development; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PurM, N-terminal-like (InterPro:IPR016188), Phosphoribosylformylglycinamidine synthase, eukaryote/proteobacteria (InterPro:IPR010073), AIR synthase related protein (InterPro:IPR000728), AIR synthase related protein, C-terminal (InterPro:IPR010918), Glutamine amidotransferase type 1 (InterPro:IPR017926); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1010.0) &  (original description: no original description)","protein_coding"
"PSME_00021054-RA","No alias","Pseudotsuga menziesii","(p35100|clpc_pea : 464.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (at5g50920 : 459.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 918.0) &  (original description: no original description)","protein_coding"
"PSME_00021539-RA","No alias","Pseudotsuga menziesii","(at3g21420 : 153.0) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: senescence-related gene 1 (TAIR:AT1G17020.1); Has 8953 Blast hits to 8890 proteins in 1011 species: Archae - 0; Bacteria - 1172; Metazoa - 113; Fungi - 1056; Plants - 5016; Viruses - 0; Other Eukaryotes - 1596 (source: NCBI BLink). & (q9xhg2|fls_maldo : 106.0) Flavonol synthase/flavanone 3-hydroxylase (EC 1.14.11.23) (EC 1.14.11.9) (FLS) - Malus domestica (Apple) (Malus sylvestris) & (reliability: 280.0) &  (original description: no original description)","protein_coding"
"PSME_00021563-RA","No alias","Pseudotsuga menziesii","(at5g67270 : 109.0) encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.; end binding protein 1C (EB1C); CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), EB1, C-terminal (InterPro:IPR004953); BEST Arabidopsis thaliana protein match is: microtubule end binding protein EB1A (TAIR:AT3G47690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 218.0) &  (original description: no original description)","protein_coding"
"PSME_00022364-RA","No alias","Pseudotsuga menziesii","(at1g80490 : 457.0) TOPLESS-related 1 (TPR1); INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: cytosol; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT1G15750.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 914.0) &  (original description: no original description)","protein_coding"
"PSME_00022600-RA","No alias","Pseudotsuga menziesii","(at1g27760 : 198.0) Encodes a protein with similarity to human interferon-related developmental regulator (IFRD)that is involved in salt tolerance. Loss of function mutations are hypersensitive to salt stress and have reduced fertility. SAT32 is found in the cytoplasm but appears to translocate to the nucleus when plants are subject to salt stress.; SALT-TOLERANCE 32 (SAT32); FUNCTIONS IN: binding; INVOLVED IN: response to salt stress; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Interferon-related developmental regulator, N-terminal (InterPro:IPR007701), Interferon-related developmental regulator, C-terminal (InterPro:IPR006921), Armadillo-type fold (InterPro:IPR016024); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 396.0) &  (original description: no original description)","protein_coding"
"PSME_00022659-RA","No alias","Pseudotsuga menziesii","(at5g38510 : 90.5) Rhomboid-related intramembrane serine protease family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 10 (TAIR:AT1G25290.2); Has 3625 Blast hits to 3625 proteins in 1267 species: Archae - 59; Bacteria - 2289; Metazoa - 237; Fungi - 114; Plants - 278; Viruses - 0; Other Eukaryotes - 648 (source: NCBI BLink). & (reliability: 181.0) &  (original description: no original description)","protein_coding"
"PSME_00022863-RA","No alias","Pseudotsuga menziesii","(at1g44910 : 102.0) Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold  for RNA processing machineries.; pre-mRNA-processing protein 40A (PRP40A); CONTAINS InterPro DOMAIN/s: FF domain (InterPro:IPR002713), WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: pre-mRNA-processing protein 40B (TAIR:AT3G19670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 204.0) &  (original description: no original description)","protein_coding"
"PSME_00022957-RA","No alias","Pseudotsuga menziesii","(at1g70520 : 404.0) Encodes a cysteine-rich receptor-like protein kinase.; cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (CRK2); FUNCTIONS IN: kinase activity; INVOLVED IN: response to ozone; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (TAIR:AT5G40380.1); Has 123193 Blast hits to 121713 proteins in 4855 species: Archae - 110; Bacteria - 13886; Metazoa - 45515; Fungi - 10581; Plants - 34413; Viruses - 473; Other Eukaryotes - 18215 (source: NCBI BLink). & (q8l4h4|nork_medtr : 223.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 808.0) &  (original description: no original description)","protein_coding"
"PSME_00023134-RA","No alias","Pseudotsuga menziesii","(at3g59140 : 1253.0) member of MRP subfamily; multidrug resistance-associated protein 14 (MRP14); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 6 (TAIR:AT3G21250.2); Has 673798 Blast hits to 360971 proteins in 4075 species: Archae - 12279; Bacteria - 544381; Metazoa - 13093; Fungi - 8967; Plants - 6941; Viruses - 21; Other Eukaryotes - 88116 (source: NCBI BLink). & (q6yuu5|mdr_orysa : 107.0) Putative multidrug resistance protein (P-glycoprotein) - Oryza sativa (Rice) & (reliability: 2506.0) &  (original description: no original description)","protein_coding"
"PSME_00023168-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00023259-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 263.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g09840 : 259.0) Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation.; cell division cycle 48 (CDC48); FUNCTIONS IN: ATPase activity, identical protein binding; INVOLVED IN: response to cadmium ion, pollen germination, pollen tube growth, cell division, phosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66378 Blast hits to 39099 proteins in 3298 species: Archae - 1713; Bacteria - 29252; Metazoa - 8676; Fungi - 6302; Plants - 5800; Viruses - 77; Other Eukaryotes - 14558 (source: NCBI BLink). & (reliability: 518.0) &  (original description: no original description)","protein_coding"
"PSME_00023481-RA","No alias","Pseudotsuga menziesii","(at1g64970 : 320.0) gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leaves; gamma-tocopherol methyltransferase (G-TMT); CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G73600.1); Has 14618 Blast hits to 14609 proteins in 2288 species: Archae - 408; Bacteria - 10917; Metazoa - 203; Fungi - 466; Plants - 497; Viruses - 0; Other Eukaryotes - 2127 (source: NCBI BLink). & (o82427|smt2_orysa : 84.0) 24-methylenesterol C-methyltransferase 2 (EC 2.1.1.143) (24-sterol C-methyltransferase 2) (Sterol-C-methyltransferase 2) - Oryza sativa (Rice) & (reliability: 640.0) &  (original description: no original description)","protein_coding"
"PSME_00023650-RA","No alias","Pseudotsuga menziesii","(at2g44500 : 355.0) O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT3G07900.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 674.0) &  (original description: no original description)","protein_coding"
"PSME_00024116-RA","No alias","Pseudotsuga menziesii","(at4g16730 : 100.0) In the Col ecotype, no functional protein is encoded at this locus due to the presence of a two-base (AT) insertion 184 nucleotides  downstream of the start codon leading to a  frame shift and premature translational termination. However, in the Ws ecotype, a functional terpene synthase that localizes to the chloroplast is encoded at this locus. It can catalyze the synthesis of (E)-beta-ocimene and (E,E)-alpha farnesene in vitro, but, it has more activity as an (E)-beta-ocimene synthase activity in vivo. This may reflect the greater availability of the GPP precursor of (E)-beta-ocimene than of the FPP precursor of (E,E)-alpha-farnesene in the chloroplasts where the Ws TPS02 is present.; terpene synthase 02 (TPS02); INVOLVED IN: metabolic process; EXPRESSED IN: sepal, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase 03 (TAIR:AT4G16740.1); Has 1736 Blast hits to 1706 proteins in 177 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 1730; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (p59287|cass_ricco : 83.2) Casbene synthase, chloroplast precursor (EC 4.2.3.8) - Ricinus communis (Castor bean) & (reliability: 200.0) &  (original description: no original description)","protein_coding"
"PSME_00024165-RA","No alias","Pseudotsuga menziesii"," (original description: no original description)","protein_coding"
"PSME_00025014-RA","No alias","Pseudotsuga menziesii","(at5g40380 : 411.0) Encodes a cysteine-rich receptor-like protein kinase.; cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (CRK42); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (TAIR:AT1G70530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q8l4h4|nork_medtr : 221.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 822.0) &  (original description: no original description)","protein_coding"
"PSME_00025200-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00025215-RA","No alias","Pseudotsuga menziesii","(at4g00100 : 212.0) Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development; ribosomal protein S13A (RPS13A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, trichome morphogenesis, leaf morphogenesis, cytokinesis by cell plate formation; LOCATED IN: cytosolic small ribosomal subunit, nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13/S15, N-terminal (InterPro:IPR012606), Ribosomal protein S15 (InterPro:IPR000589), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: Ribosomal protein S13/S15 (TAIR:AT3G60770.1); Has 1100 Blast hits to 1100 proteins in 416 species: Archae - 259; Bacteria - 0; Metazoa - 343; Fungi - 146; Plants - 139; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink). & (p62302|rs13_soybn : 211.0) 40S ribosomal protein S13 - Glycine max (Soybean) & (reliability: 424.0) &  (original description: no original description)","protein_coding"
"PSME_00025237-RA","No alias","Pseudotsuga menziesii","(at4g20450 : 213.0) Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G29000.1); Has 157406 Blast hits to 121766 proteins in 4522 species: Archae - 95; Bacteria - 13354; Metazoa - 44140; Fungi - 9932; Plants - 71049; Viruses - 392; Other Eukaryotes - 18444 (source: NCBI BLink). & (q8l4h4|nork_medtr : 172.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 414.0) &  (original description: no original description)","protein_coding"
"PSME_00025301-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 353.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 706.0) &  (original description: no original description)","protein_coding"
"PSME_00025491-RA","No alias","Pseudotsuga menziesii","(q9sp07|1433_lillo : 99.8) 14-3-3-like protein - Lilium longiflorum (Trumpet lily) & (at5g38480 : 92.0) general regulatory factor, a 14-3-3 gene; general regulatory factor 3 (GRF3); FUNCTIONS IN: protein phosphorylated amino acid binding, ATP binding; LOCATED IN: mitochondrion, cell wall, chloroplast, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 7 (TAIR:AT3G02520.1); Has 2749 Blast hits to 2739 proteins in 391 species: Archae - 0; Bacteria - 6; Metazoa - 1263; Fungi - 337; Plants - 766; Viruses - 0; Other Eukaryotes - 377 (source: NCBI BLink). & (reliability: 184.0) &  (original description: no original description)","protein_coding"
"PSME_00025560-RA","No alias","Pseudotsuga menziesii","(at1g80820 : 325.0) Encodes an cinnamoyl CoA reductase isoform.  Involved in lignin biosynthesis.; cinnamoyl coa reductase (CCR2); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase 1 (TAIR:AT1G15950.1); Has 10779 Blast hits to 10766 proteins in 1817 species: Archae - 140; Bacteria - 4512; Metazoa - 410; Fungi - 946; Plants - 2512; Viruses - 14; Other Eukaryotes - 2245 (source: NCBI BLink). & (p51108|dfra_maize : 174.0) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR) (Dihydrokaempferol 4-reductase) - Zea mays (Maize) & (reliability: 650.0) &  (original description: no original description)","protein_coding"
"PSME_00025946-RA","No alias","Pseudotsuga menziesii","(at1g02850 : 338.0) beta glucosidase 11 (BGLU11); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 10 (TAIR:AT4G27830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p29736|myra_sinal : 244.0) Myrosinase MA1 (EC 3.2.1.147) (Sinigrinase) (Thioglucosidase) - Sinapis alba (White mustard) (Brassica hirta) & (reliability: 676.0) &  (original description: no original description)","protein_coding"
"PSME_00026054-RA","No alias","Pseudotsuga menziesii","(at5g57800 : 514.0) encodes a transmembrane protein with similarity to the sterol desaturase family at the N-terminus and to the short-chain dehydrogenase/reductase family at the C-terminus. Mutant analyses indicate this protein is involved in cuticle membrane and wax biosynthesis.; ECERIFERUM 3 (CER3); FUNCTIONS IN: oxidoreductase activity, binding, iron ion binding, catalytic activity; INVOLVED IN: cuticle hydrocarbon biosynthetic process, response to salt stress, pollen sperm cell differentiation, wax biosynthetic process, cuticle development; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Fatty acid hydroxylase (InterPro:IPR006694), Uncharacterised protein, Wax2 C-terminal (InterPro:IPR021940); BEST Arabidopsis thaliana protein match is: Fatty acid hydroxylase superfamily (TAIR:AT1G02205.2); Has 879 Blast hits to 877 proteins in 232 species: Archae - 0; Bacteria - 279; Metazoa - 24; Fungi - 149; Plants - 340; Viruses - 0; Other Eukaryotes - 87 (source: NCBI BLink). & (reliability: 1028.0) &  (original description: no original description)","protein_coding"
"PSME_00026498-RA","No alias","Pseudotsuga menziesii","(at2g02040 : 197.0) Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays.; peptide transporter 2 (PTR2); FUNCTIONS IN: dipeptide transporter activity, high affinity oligopeptide transporter activity, tripeptide transporter activity, peptide transporter activity, transporter activity; INVOLVED IN: dipeptide transport, tripeptide transport, peptide transport; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G62200.1); Has 8080 Blast hits to 7668 proteins in 1494 species: Archae - 0; Bacteria - 3960; Metazoa - 799; Fungi - 488; Plants - 2224; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink). & (reliability: 394.0) &  (original description: no original description)","protein_coding"
"PSME_00027030-RA","No alias","Pseudotsuga menziesii","(at2g24130 : 166.0) Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G47570.1); Has 211952 Blast hits to 136025 proteins in 5092 species: Archae - 179; Bacteria - 23123; Metazoa - 70875; Fungi - 10647; Plants - 82602; Viruses - 325; Other Eukaryotes - 24201 (source: NCBI BLink). & (q8lpb4|pskr_dauca : 109.0) Phytosulfokine receptor precursor (EC 2.7.11.1) (Phytosulfokine LRR receptor kinase) - Daucus carota (Carrot) & (reliability: 332.0) &  (original description: no original description)","protein_coding"
"PSME_00027525-RA","No alias","Pseudotsuga menziesii","(at2g26710 : 500.0) Encodes a member of the cytochrome p450 family that serves as a control point between multiple photoreceptor systems and brassinosteroid signal transduction. Involved in brassinolide metabolism. Mediates response to a variety of light signals including hypocotyl elongation and cotyledon expansion.; PHYB ACTIVATION TAGGED SUPPRESSOR 1 (BAS1); FUNCTIONS IN: steroid hydroxylase activity, oxygen binding; INVOLVED IN: response to light stimulus, response to brassinosteroid stimulus, brassinosteroid homeostasis, brassinosteroid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 72, subfamily A, polypeptide 8 (TAIR:AT3G14620.1); Has 34717 Blast hits to 34565 proteins in 1738 species: Archae - 71; Bacteria - 6148; Metazoa - 11470; Fungi - 6879; Plants - 8435; Viruses - 3; Other Eukaryotes - 1711 (source: NCBI BLink). & (q05047|c72a1_catro : 390.0) Cytochrome P450 72A1 (EC 1.3.3.9) (CYPLXXII) (Secologanin synthase) (SLS) - Catharanthus roseus (Rosy periwinkle) (Madagascar periwinkle) & (reliability: 1000.0) &  (original description: no original description)","protein_coding"
"PSME_00027598-RA","No alias","Pseudotsuga menziesii","(at1g30400 : 189.0) glutathione S-conjugate transporting ATPase (AtMRP1) mRNA. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.; ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1 (ATMRP1); FUNCTIONS IN: xenobiotic-transporting ATPase activity, ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to cyclopentenone; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 2 (TAIR:AT2G34660.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 378.0) &  (original description: no original description)","protein_coding"
"PSME_00027634-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 456.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 912.0) &  (original description: no original description)","protein_coding"
"PSME_00027635-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 239.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 478.0) &  (original description: no original description)","protein_coding"
"PSME_00027816-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 473.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 946.0) &  (original description: no original description)","protein_coding"
"PSME_00027838-RA","No alias","Pseudotsuga menziesii","(p51106|dfra_horvu : 229.0) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR) (Dihydrokaempferol 4-reductase) - Hordeum vulgare (Barley) & (at5g42800 : 222.0) dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins.; dihydroflavonol 4-reductase (DFR); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G45400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 444.0) &  (original description: no original description)","protein_coding"
"PSME_00027859-RA","No alias","Pseudotsuga menziesii","(at4g08850 : 291.0) Leucine-rich repeat receptor-like protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Tyrosine-protein kinase, active site (InterPro:IPR008266), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase family protein with leucine-rich repeat domain (TAIR:AT1G35710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p93194|rpk1_iponi : 250.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 548.0) &  (original description: no original description)","protein_coding"
"PSME_00027970-RA","No alias","Pseudotsuga menziesii","(at1g66920 : 278.0) Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G66910.1). & (p17801|kpro_maize : 160.0) Putative receptor protein kinase ZmPK1 precursor (EC 2.7.11.1) - Zea mays (Maize) & (reliability: 556.0) &  (original description: no original description)","protein_coding"
"PSME_00028016-RA","No alias","Pseudotsuga menziesii","(at5g16990 : 280.0) molecular function has not been defined, was shown involved in oxidative stress tolerance.; Zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: response to oxidative stress; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alkenal reductase (TAIR:AT5G16970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 560.0) &  (original description: no original description)","protein_coding"
"PSME_00028389-RA","No alias","Pseudotsuga menziesii","(q9slx0|ima1b_orysa : 121.0) Importin alpha-1b subunit - Oryza sativa (Rice) & (at3g06720 : 114.0) Encodes importin alpha involved in nuclear import.; AT-IMP; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: cytosol, nuclear envelope, nucleolus, cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding domain (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 2 (TAIR:AT4G16143.2); Has 4059 Blast hits to 2974 proteins in 281 species: Archae - 4; Bacteria - 22; Metazoa - 1537; Fungi - 665; Plants - 1109; Viruses - 0; Other Eukaryotes - 722 (source: NCBI BLink). & (reliability: 228.0) &  (original description: no original description)","protein_coding"
"PSME_00028821-RA","No alias","Pseudotsuga menziesii","(at5g08020 : 734.0) Encodes a homolog of Replication Protein A. rpa70b mutants are hypersensitive to UV-B radiation and MMS treatments suggesting a role for this protein in DNA damage repair.; RPA70-kDa subunit B (RPA70B); FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: DNA repair, response to UV-B, DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor A, C-terminal (InterPro:IPR013955), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: Replication factor-A protein 1-related (TAIR:AT5G61000.1); Has 1056 Blast hits to 1045 proteins in 226 species: Archae - 10; Bacteria - 0; Metazoa - 213; Fungi - 147; Plants - 535; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink). & (reliability: 1424.0) &  (original description: no original description)","protein_coding"
"PSME_00028838-RA","No alias","Pseudotsuga menziesii","(at3g03080 : 124.0) Zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: alkenal reductase (TAIR:AT5G16970.1); Has 15825 Blast hits to 15807 proteins in 1776 species: Archae - 145; Bacteria - 8757; Metazoa - 820; Fungi - 1154; Plants - 597; Viruses - 0; Other Eukaryotes - 4352 (source: NCBI BLink). & (reliability: 248.0) &  (original description: no original description)","protein_coding"
"PSME_00029025-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 351.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 702.0) &  (original description: no original description)","protein_coding"
"PSME_00029109-RA","No alias","Pseudotsuga menziesii","(at1g12570 : 285.0) Glucose-methanol-choline (GMC) oxidoreductase family protein; FUNCTIONS IN: aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; INVOLVED IN: alcohol metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase (InterPro:IPR012132), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867); BEST Arabidopsis thaliana protein match is: Glucose-methanol-choline (GMC) oxidoreductase family protein (TAIR:AT5G51950.1); Has 10555 Blast hits to 10382 proteins in 1112 species: Archae - 4; Bacteria - 3926; Metazoa - 806; Fungi - 1507; Plants - 299; Viruses - 12; Other Eukaryotes - 4001 (source: NCBI BLink). & (reliability: 550.0) &  (original description: no original description)","protein_coding"
"PSME_00029177-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00029227-RA","No alias","Pseudotsuga menziesii","(at2g24130 : 529.0) Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G47570.1); Has 211952 Blast hits to 136025 proteins in 5092 species: Archae - 179; Bacteria - 23123; Metazoa - 70875; Fungi - 10647; Plants - 82602; Viruses - 325; Other Eukaryotes - 24201 (source: NCBI BLink). & (p93194|rpk1_iponi : 350.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 1058.0) &  (original description: no original description)","protein_coding"
"PSME_00029630-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 480.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 960.0) &  (original description: no original description)","protein_coding"
"PSME_00029718-RA","No alias","Pseudotsuga menziesii","(at1g30380 : 108.0) Encodes subunit K of photosystem I reaction center.; photosystem I subunit K (PSAK); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, photosystem I, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I PsaG/PsaK protein (InterPro:IPR000549), Photosystem I reaction centre, PsaK, plant (InterPro:IPR017493), Photosystem I reaction centre, PsaG/PsaK, plant (InterPro:IPR016370); Has 85 Blast hits to 85 proteins in 34 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (q9zt05|psak_medsa : 107.0) Photosystem I reaction center subunit psaK, chloroplast precursor (Photosystem I subunit X) (PSI-K) - Medicago sativa (Alfalfa) & (reliability: 216.0) &  (original description: no original description)","protein_coding"
"PSME_00029861-RA","No alias","Pseudotsuga menziesii","(at3g52220 : 117.0) CONTAINS InterPro DOMAIN/s: Kinase phosphorylation domain (InterPro:IPR019315); Has 8882 Blast hits to 4920 proteins in 346 species: Archae - 10; Bacteria - 184; Metazoa - 3955; Fungi - 1221; Plants - 712; Viruses - 24; Other Eukaryotes - 2776 (source: NCBI BLink). & (reliability: 234.0) &  (original description: no original description)","protein_coding"
"PSME_00029977-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00030013-RA","No alias","Pseudotsuga menziesii","(at2g38470 : 151.0) Member of the plant WRKY transcription factor family.  Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens.  Located in nucleus. Involved in response to various abiotic stresses - especially salt stress.; WRKY DNA-binding protein 33 (WRKY33); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 4 (TAIR:AT1G13960.1); Has 7573 Blast hits to 4449 proteins in 326 species: Archae - 2; Bacteria - 120; Metazoa - 293; Fungi - 170; Plants - 5689; Viruses - 9; Other Eukaryotes - 1290 (source: NCBI BLink). & (reliability: 302.0) &  (original description: no original description)","protein_coding"
"PSME_00030063-RA","No alias","Pseudotsuga menziesii","(q5jlb5|zfnl2_orysa : 135.0) Zinc finger CCCH domain-containing protein ZFN-like 2 - Oryza sativa (Rice) & (at2g32930 : 125.0) Encodes a zinc finger protein.; zinc finger nuclease 2 (ZFN2); CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT1G04990.1). & (reliability: 250.0) &  (original description: no original description)","protein_coding"
"PSME_00030252-RA","No alias","Pseudotsuga menziesii","(at4g16210 : 292.0) enoyl-CoA hydratase/isomerase A (ECHIA); FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Crotonase, core (InterPro:IPR001753); BEST Arabidopsis thaliana protein match is: enoyl-CoA hydratase/isomerase D (TAIR:AT1G60550.1); Has 36619 Blast hits to 36609 proteins in 2298 species: Archae - 475; Bacteria - 23840; Metazoa - 1646; Fungi - 934; Plants - 612; Viruses - 0; Other Eukaryotes - 9112 (source: NCBI BLink). & (q39659|mfpa_cucsa : 98.2) Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Includes: Enoyl-CoA hydratase (EC 4.2.1.17); 3-2-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3); 3-hydroxyacyl-CoA dehydrogenase ( & (reliability: 584.0) &  (original description: no original description)","protein_coding"
"PSME_00030400-RA","No alias","Pseudotsuga menziesii","(q9m4x7|expa6_orysa : 228.0) Expansin-A6 precursor (OsEXPA6) (Alpha-expansin-6) (OsEXP6) (OsaEXPa1.24) - Oryza sativa (Rice) & (at5g05290 : 223.0) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio); expansin A2 (EXPA2); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A8 (TAIR:AT2G40610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 446.0) &  (original description: no original description)","protein_coding"
"PSME_00030783-RA","No alias","Pseudotsuga menziesii","(at3g53960 : 552.0) Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G37900.1); Has 6025 Blast hits to 5886 proteins in 1158 species: Archae - 0; Bacteria - 2442; Metazoa - 501; Fungi - 426; Plants - 2213; Viruses - 0; Other Eukaryotes - 443 (source: NCBI BLink). & (reliability: 1020.0) &  (original description: no original description)","protein_coding"
"PSME_00030811-RA","No alias","Pseudotsuga menziesii","(at1g65910 : 110.0) NAC domain containing protein 28 (NAC028); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 86 (TAIR:AT5G17260.1); Has 3059 Blast hits to 3053 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 3044; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). & (q7gcl7|nac74_orysa : 86.7) NAC domain-containing protein 74 (ONAC074) - Oryza sativa (Rice) & (reliability: 220.0) &  (original description: no original description)","protein_coding"
"PSME_00031452-RA","No alias","Pseudotsuga menziesii","(at5g23430 : 108.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G08390.1); Has 113227 Blast hits to 41164 proteins in 1010 species: Archae - 84; Bacteria - 11989; Metazoa - 46351; Fungi - 25015; Plants - 14725; Viruses - 6; Other Eukaryotes - 15057 (source: NCBI BLink). & (reliability: 216.0) &  (original description: no original description)","protein_coding"
"PSME_00031477-RA","No alias","Pseudotsuga menziesii","(at1g69550 : 465.0) disease resistance protein (TIR-NBS-LRR class); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane, endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) (TAIR:AT5G11250.1); Has 8455 Blast hits to 8197 proteins in 261 species: Archae - 0; Bacteria - 113; Metazoa - 3; Fungi - 4; Plants - 8303; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). & (p93194|rpk1_iponi : 166.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 930.0) &  (original description: no original description)","protein_coding"
"PSME_00031588-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00031722-RA","No alias","Pseudotsuga menziesii","(q949g3|pdr1_nicpl : 295.0) Pleiotropic drug resistance protein 1 (NpPDR1) - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (at1g15520 : 275.0) ABC transporter family involved in ABA transport and resistance to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers, stomata and roots.; pleiotropic drug resistance 12 (PDR12); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 11 (TAIR:AT1G66950.1); Has 377983 Blast hits to 279992 proteins in 3946 species: Archae - 7615; Bacteria - 304057; Metazoa - 8776; Fungi - 6428; Plants - 5794; Viruses - 2; Other Eukaryotes - 45311 (source: NCBI BLink). & (reliability: 550.0) &  (original description: no original description)","protein_coding"
"PSME_00031817-RA","No alias","Pseudotsuga menziesii","(at3g26590 : 548.0) MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G38030.1); Has 11119 Blast hits to 11024 proteins in 1994 species: Archae - 242; Bacteria - 8025; Metazoa - 141; Fungi - 326; Plants - 1364; Viruses - 0; Other Eukaryotes - 1021 (source: NCBI BLink). & (reliability: 1052.0) &  (original description: no original description)","protein_coding"
"PSME_00032011-RA","No alias","Pseudotsuga menziesii","(at1g10360 : 137.0) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).; glutathione S-transferase TAU 18 (GSTU18); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutathione S-transferase family protein (TAIR:AT1G10370.1); Has 5056 Blast hits to 5041 proteins in 1030 species: Archae - 0; Bacteria - 2429; Metazoa - 208; Fungi - 116; Plants - 1907; Viruses - 0; Other Eukaryotes - 396 (source: NCBI BLink). & (q06398|gstu6_orysa : 132.0) Probable glutathione S-transferase GSTU6 (EC 2.5.1.18) (28 kDa cold-induced protein) - Oryza sativa (Rice) & (reliability: 274.0) &  (original description: no original description)","protein_coding"
"PSME_00032106-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00032233-RA","No alias","Pseudotsuga menziesii","(at5g46330 : 308.0) Encodes a leucine-rich repeat serine/threonine protein kinase that is expressed ubiquitously. FLS2 is involved in MAP kinase signalling relay involved in innate immunity. Essential in the perception of flagellin, a potent elicitor of the defense response.  FLS2 is directed for degradation by the bacterial ubiquitin ligase AvrPtoB.; FLAGELLIN-SENSITIVE 2 (FLS2); FUNCTIONS IN: protein serine/threonine kinase activity, transmembrane receptor protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT4G20140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p93194|rpk1_iponi : 265.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 590.0) &  (original description: no original description)","protein_coding"
"PSME_00032291-RA","No alias","Pseudotsuga menziesii","(at1g75950 : 162.0) SKP1 is core component of the SCF family of E3 ubiquitin ligases and serves to tether the rest of the complex to an F-box protein, which  provides specificity in binding to ubiquitin ligase substrate proteins. Predominately expressed from leptotene  to pachytene. Negatively regulates recombination. Interacts with P0, a silencing suppressor protein encoded by poleroviruses by means of a conserved minimal F-box motif.; S phase kinase-associated protein 1 (SKP1); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: negative regulation of DNA recombination, response to cadmium ion, mitosis, male meiosis, ubiquitin-dependent protein catabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 35 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein (TAIR:AT5G42190.1); Has 1455 Blast hits to 1451 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 552; Fungi - 179; Plants - 538; Viruses - 11; Other Eukaryotes - 175 (source: NCBI BLink). & (reliability: 324.0) &  (original description: no original description)","protein_coding"
"PSME_00032438-RA","No alias","Pseudotsuga menziesii","(at2g29050 : 202.0) RHOMBOID-like 1 (RBL1); FUNCTIONS IN: serine-type endopeptidase activity; LOCATED IN: Golgi apparatus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 4 (TAIR:AT3G53780.2); Has 5724 Blast hits to 5720 proteins in 1694 species: Archae - 148; Bacteria - 3468; Metazoa - 523; Fungi - 153; Plants - 363; Viruses - 0; Other Eukaryotes - 1069 (source: NCBI BLink). & (reliability: 404.0) &  (original description: no original description)","protein_coding"
"PSME_00032445-RA","No alias","Pseudotsuga menziesii","(at5g46630 : 318.0) clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family; similar to micro-adaptins of clathrin coated vesicle adaptor complexes; Clathrin adaptor complexes medium subunit family protein; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Clathrin coat associated protein AP-50 (InterPro:IPR015629), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complexes medium subunit family protein (TAIR:AT1G60780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 636.0) &  (original description: no original description)","protein_coding"
"PSME_00032456-RA","No alias","Pseudotsuga menziesii","(at4g10770 : 841.0) oligopeptide transporter; oligopeptide transporter 7 (OPT7); CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 1 (TAIR:AT4G27730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (gnl|cdd|68872 : 150.0) no description available & (gnl|cdd|39774 : 82.5) no description available & (reliability: 1682.0) &  (original description: no original description)","protein_coding"
"PSME_00032513-RA","No alias","Pseudotsuga menziesii","(at4g02750 : 169.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). & (reliability: 338.0) &  (original description: no original description)","protein_coding"
"PSME_00032566-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00032709-RA","No alias","Pseudotsuga menziesii","(at3g01140 : 84.7) Encodes a MIXTA-like MYB gene NOECK (NOK). Loss of function mutations show an increased number of branchpoints in leaf trichomes suggesting a role in negative regulation of trichome branching.; myb domain protein 106 (MYB106); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: trichome branching, regulation of transcription, DNA-dependent; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb transcription factor (InterPro:IPR015495), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: myb domain protein 16 (TAIR:AT5G15310.1); Has 8850 Blast hits to 8247 proteins in 477 species: Archae - 0; Bacteria - 0; Metazoa - 708; Fungi - 505; Plants - 5831; Viruses - 3; Other Eukaryotes - 1803 (source: NCBI BLink). & (reliability: 169.4) &  (original description: no original description)","protein_coding"
"PSME_00033173-RA","No alias","Pseudotsuga menziesii","(at3g21250 : 396.0) member of MRP subfamily; multidrug resistance-associated protein 6 (MRP6); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 14 (TAIR:AT3G59140.1). & (reliability: 792.0) &  (original description: no original description)","protein_coding"
"PSME_00033777-RA","No alias","Pseudotsuga menziesii","(at1g02080 : 99.8) transcription regulators; FUNCTIONS IN: transcription regulator activity; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: CCR4-Not complex component, Not1 (InterPro:IPR007196). & (reliability: 199.6) &  (original description: no original description)","protein_coding"
"PSME_00033847-RA","No alias","Pseudotsuga menziesii","(at5g05860 : 109.0) UDP-glucosyl transferase 76C2 (UGT76C2); FUNCTIONS IN: in 6 functions; INVOLVED IN: metabolic process; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT5G05880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q43641|ufog_solme : 105.0) Anthocyanidin 3-O-glucosyltransferase (EC 2.4.1.115) (Flavonol 3-O-glucosyltransferase) (UDP-glucose flavonoid 3-O-glucosyltransferase) - Solanum melongena (Eggplant) (Aubergine) & (reliability: 214.0) &  (original description: no original description)","protein_coding"
"PSME_00033896-RA","No alias","Pseudotsuga menziesii","(at1g17220 : 213.0) Encodes a chloroplast localized protein with similarity to translation initiation factor 2. Can complement loss of INFB in E.coli suggesting FUG1 does function as a translation initiation factor in vivo. Identified as a suppressor of the leaf variegation mutant var2-6. Suppression is only seen in hypomorphs as complete loss of function alleles are embryo lethal.; fu-gaeri1 (FUG1); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF-2, N-terminal (InterPro:IPR006847), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Initiation factor 2 (InterPro:IPR000178), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation initiation factor 2, small GTP-binding protein (TAIR:AT4G11160.1); Has 64472 Blast hits to 64325 proteins in 4737 species: Archae - 1215; Bacteria - 42273; Metazoa - 2198; Fungi - 2344; Plants - 1110; Viruses - 4; Other Eukaryotes - 15328 (source: NCBI BLink). & (p57997|if2c_phavu : 204.0) Translation initiation factor IF-2, chloroplast precursor (PvIF2cp) - Phaseolus vulgaris (Kidney bean) (French bean) & (reliability: 426.0) &  (original description: no original description)","protein_coding"
"PSME_00033929-RA","No alias","Pseudotsuga menziesii","(at1g02850 : 318.0) beta glucosidase 11 (BGLU11); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 10 (TAIR:AT4G27830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p49235|bglc_maize : 221.0) Beta-glucosidase, chloroplast precursor (EC 3.2.1.21) (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) - Zea mays (Maize) & (reliability: 636.0) &  (original description: no original description)","protein_coding"
"PSME_00033989-RA","No alias","Pseudotsuga menziesii","(at2g02240 : 182.0) maternal effect embryo arrest 66 (MEE66); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: phloem protein 2-B2 (TAIR:AT2G02250.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 364.0) &  (original description: no original description)","protein_coding"
"PSME_00034059-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00034327-RA","No alias","Pseudotsuga menziesii","(at1g02850 : 276.0) beta glucosidase 11 (BGLU11); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 10 (TAIR:AT4G27830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p49235|bglc_maize : 197.0) Beta-glucosidase, chloroplast precursor (EC 3.2.1.21) (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) - Zea mays (Maize) & (reliability: 552.0) &  (original description: no original description)","protein_coding"
"PSME_00034723-RA","No alias","Pseudotsuga menziesii","(q9zrb0|tbb3_wheat : 218.0) Tubulin beta-3 chain (Beta-3 tubulin) - Triticum aestivum (Wheat) & (at5g23860 : 215.0) beta-tubulin, preferentially expressed in endodermal and phloem cells of primary roots and in the vascular tissues of leaves, stems, and flowers.; tubulin beta 8 (TUB8); CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 3 (TAIR:AT5G62700.1). & (reliability: 430.0) &  (original description: no original description)","protein_coding"
"PSME_00034728-RA","No alias","Pseudotsuga menziesii","(at2g01170 : 274.0) Encodes a bidirectional amino acid transporter that can transport ala, arg, glu and lys but not GABA or pro with both export and import activity.  Its expression is localized in the vascular tissues suggesting a function in amino acids export from the phloem into sink tissue.; bidirectional amino acid transporter 1 (BAT1); FUNCTIONS IN: arginine transmembrane transporter activity, L-lysine transmembrane transporter activity, L-alanine transmembrane transporter activity, L-glutamate transmembrane transporter activity; INVOLVED IN: transport, amino acid transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid permease subfamily (InterPro:IPR004756), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 548.0) &  (original description: no original description)","protein_coding"
"PSME_00034902-RA","No alias","Pseudotsuga menziesii","(at4g10500 : 298.0) 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: secondary metabolic process; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G10490.1); Has 8560 Blast hits to 8509 proteins in 1005 species: Archae - 0; Bacteria - 1116; Metazoa - 115; Fungi - 958; Plants - 4983; Viruses - 0; Other Eukaryotes - 1388 (source: NCBI BLink). & (p28038|fl3h_horvu : 181.0) Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9) (Flavonone-3-hydroxylase) (F3H) (FHT) - Hordeum vulgare (Barley) & (reliability: 580.0) &  (original description: no original description)","protein_coding"
"PSME_00034942-RA","No alias","Pseudotsuga menziesii","(at1g15950 : 320.0) Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.; cinnamoyl coa reductase 1 (CCR1); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase (TAIR:AT1G80820.1); Has 11995 Blast hits to 11983 proteins in 1896 species: Archae - 218; Bacteria - 5371; Metazoa - 416; Fungi - 931; Plants - 2539; Viruses - 54; Other Eukaryotes - 2466 (source: NCBI BLink). & (p51110|dfra_vitvi : 145.0) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR) (Dihydrokaempferol 4-reductase) - Vitis vinifera (Grape) & (reliability: 640.0) &  (original description: no original description)","protein_coding"
"PSME_00035015-RA","No alias","Pseudotsuga menziesii","(at3g63520 : 145.0) Encodes a protein with 9-<i>cis</i>-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including &#946;-carotene, lutein, zeaxanthin, and all-<i>trans</i>-violaxanthin.  When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial.  The enzyme did not cleave as efficiently carotenoids containing 9-<i>cis</i>-double or allenic bonds.; carotenoid cleavage dioxygenase 1 (CCD1); FUNCTIONS IN: 9-cis-epoxycarotenoid dioxygenase activity; INVOLVED IN: response to water deprivation, carotene catabolic process, xanthophyll catabolic process, carotenoid catabolic process; LOCATED IN: plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 4 (TAIR:AT4G19170.1); Has 2926 Blast hits to 2896 proteins in 500 species: Archae - 16; Bacteria - 808; Metazoa - 317; Fungi - 194; Plants - 866; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink). & (reliability: 290.0) &  (original description: no original description)","protein_coding"
"PSME_00035432-RA","No alias","Pseudotsuga menziesii","(o48560|cata3_soybn : 754.0) Catalase-3 (EC 1.11.1.6) - Glycine max (Soybean) & (at1g20620 : 750.0) Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen.; catalase 3 (CAT3); FUNCTIONS IN: catalase activity, cobalt ion binding; INVOLVED IN: in 7 processes; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase related subgroup (InterPro:IPR018028), Catalase (InterPro:IPR002226), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: catalase 2 (TAIR:AT4G35090.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1500.0) &  (original description: no original description)","protein_coding"
"PSME_00035441-RA","No alias","Pseudotsuga menziesii","(at5g07050 : 424.0) nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT2G40900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 848.0) &  (original description: no original description)","protein_coding"
"PSME_00035487-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00035507-RA","No alias","Pseudotsuga menziesii","(at2g22610 : 113.0) Di-glucose binding protein with Kinesin motor domain; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Malectin/receptor-like protein kinase (InterPro:IPR021720), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: Di-glucose binding protein with Kinesin motor domain (TAIR:AT1G72250.2). & (reliability: 226.0) &  (original description: no original description)","protein_coding"
"PSME_00035553-RA","No alias","Pseudotsuga menziesii","(at2g44130 : 113.0) Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT3G59940.1); Has 5544 Blast hits to 3569 proteins in 209 species: Archae - 8; Bacteria - 363; Metazoa - 3928; Fungi - 26; Plants - 960; Viruses - 5; Other Eukaryotes - 254 (source: NCBI BLink). & (reliability: 226.0) &  (original description: no original description)","protein_coding"
"PSME_00035583-RA","No alias","Pseudotsuga menziesii","(at5g49555 : 124.0) FAD/NAD(P)-binding oxidoreductase family protein; CONTAINS InterPro DOMAIN/s: FAD dependent oxidoreductase (InterPro:IPR006076); BEST Arabidopsis thaliana protein match is: carotenoid isomerase (TAIR:AT1G06820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 248.0) &  (original description: no original description)","protein_coding"
"PSME_00035601-RA","No alias","Pseudotsuga menziesii","(at5g03760 : 232.0) encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium and the host plant. 3' UTR is involved in transcriptional regulation and the gene is expressed in the elongation zone of the root.; ATCSLA09; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: cellulose synthase-like A02 (TAIR:AT5G22740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 464.0) &  (original description: no original description)","protein_coding"
"PSME_00035956-RA","No alias","Pseudotsuga menziesii","(at5g27280 : 172.0) Zim17-type zinc finger protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Zim17-type (InterPro:IPR007853); BEST Arabidopsis thaliana protein match is: Zim17-type zinc finger protein (TAIR:AT1G68730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 344.0) &  (original description: no original description)","protein_coding"
"PSME_00036100-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00036204-RA","No alias","Pseudotsuga menziesii","(at2g24130 : 453.0) Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G47570.1); Has 211952 Blast hits to 136025 proteins in 5092 species: Archae - 179; Bacteria - 23123; Metazoa - 70875; Fungi - 10647; Plants - 82602; Viruses - 325; Other Eukaryotes - 24201 (source: NCBI BLink). & (p93194|rpk1_iponi : 373.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 868.0) &  (original description: no original description)","protein_coding"
"PSME_00036348-RA","No alias","Pseudotsuga menziesii","(at2g24130 : 481.0) Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G47570.1); Has 211952 Blast hits to 136025 proteins in 5092 species: Archae - 179; Bacteria - 23123; Metazoa - 70875; Fungi - 10647; Plants - 82602; Viruses - 325; Other Eukaryotes - 24201 (source: NCBI BLink). & (p93194|rpk1_iponi : 293.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 962.0) &  (original description: no original description)","protein_coding"
"PSME_00036400-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 530.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1060.0) &  (original description: no original description)","protein_coding"
"PSME_00036402-RA","No alias","Pseudotsuga menziesii","(at1g70520 : 373.0) Encodes a cysteine-rich receptor-like protein kinase.; cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (CRK2); FUNCTIONS IN: kinase activity; INVOLVED IN: response to ozone; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (TAIR:AT5G40380.1); Has 123193 Blast hits to 121713 proteins in 4855 species: Archae - 110; Bacteria - 13886; Metazoa - 45515; Fungi - 10581; Plants - 34413; Viruses - 473; Other Eukaryotes - 18215 (source: NCBI BLink). & (q8l4h4|nork_medtr : 211.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 746.0) &  (original description: no original description)","protein_coding"
"PSME_00036417-RA","No alias","Pseudotsuga menziesii","(at5g27280 : 154.0) Zim17-type zinc finger protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Zim17-type (InterPro:IPR007853); BEST Arabidopsis thaliana protein match is: Zim17-type zinc finger protein (TAIR:AT1G68730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 308.0) &  (original description: no original description)","protein_coding"
"PSME_00036456-RA","No alias","Pseudotsuga menziesii","(p22337|stad_ricco : 550.0) Acyl-[acyl-carrier-protein] desaturase, chloroplast precursor (EC 1.14.19.2) (Stearoyl-ACP desaturase) (Delta(9) stearoyl-acyl carrier protein desaturase) - Ricinus communis (Castor bean) & (at2g43710 : 543.0) Encodes a stearoyl-ACP desaturase, involved in fatty acid desaturation. The ssi2 mutants have increased 18:0 and reduced 18:1 fatty acids. Exogenous application of glycerol to wild type plants mimics the ssi2 mutant phenotype. The altered 18:1 fatty acid content in the ssi2 mutants has an impact on SA- and JA-mediated defense signaling. ssi2 mutants resulted in hyper-resistance to green peach aphid and antibiosis activity in petiole exudates.; SSI2; FUNCTIONS IN: acyl-[acyl-carrier-protein] desaturase activity, stearoyl-CoA 9-desaturase activity; INVOLVED IN: in 10 processes; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Fatty acid desaturase, type 2 (InterPro:IPR005067), Stearoyl-ACP desaturase, conserved site (InterPro:IPR005803); BEST Arabidopsis thaliana protein match is: Plant stearoyl-acyl-carrier-protein desaturase family protein (TAIR:AT3G02630.1); Has 946 Blast hits to 938 proteins in 221 species: Archae - 0; Bacteria - 436; Metazoa - 2; Fungi - 0; Plants - 450; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). & (reliability: 1086.0) &  (original description: no original description)","protein_coding"
"PSME_00036464-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00036555-RA","No alias","Pseudotsuga menziesii","(at5g16750 : 147.0) Encodes a nucleolar localized WD-40 repeat protein that is preferentially expressed in dividing cells and is required for regulated division planes and embryo development.; TORMOZEMBRYO DEFECTIVE (TOZ); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Small-subunit processome, Utp13 (InterPro:IPR013934), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 153281 Blast hits to 38108 proteins in 953 species: Archae - 96; Bacteria - 13855; Metazoa - 64321; Fungi - 32637; Plants - 21715; Viruses - 0; Other Eukaryotes - 20657 (source: NCBI BLink). & (reliability: 294.0) &  (original description: no original description)","protein_coding"
"PSME_00037097-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 464.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 928.0) &  (original description: no original description)","protein_coding"
"PSME_00037321-RA","No alias","Pseudotsuga menziesii","(at4g24220 : 470.0) encodes a novel protein containing mammalian death domain involved in programmed cell death. Gene is expressed in vascular system and mutants carrying dominant mutation in the gene have defective vascular patterning. Gene expression is induced specifically by wounding.; VEIN PATTERNING 1 (VEP1); FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: xylem and phloem pattern formation, response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G58750.1); Has 711 Blast hits to 707 proteins in 202 species: Archae - 0; Bacteria - 240; Metazoa - 0; Fungi - 168; Plants - 221; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). & (reliability: 940.0) &  (original description: no original description)","protein_coding"
"PSME_00037366-RA","No alias","Pseudotsuga menziesii","(at2g16850 : 445.0) plasma membrane intrinsic protein 2;8 (PIP2;8); FUNCTIONS IN: water channel activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: root, flower, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: plasma membrane intrinsic protein 3 (TAIR:AT4G35100.2); Has 11009 Blast hits to 10999 proteins in 2241 species: Archae - 81; Bacteria - 5232; Metazoa - 1475; Fungi - 457; Plants - 2523; Viruses - 2; Other Eukaryotes - 1239 (source: NCBI BLink). & (q8h5n9|pip21_orysa : 433.0) Probable aquaporin PIP2.1 (Plasma membrane intrinsic protein 2a) (PIP2a) (OsPIP2.1) - Oryza sativa (Rice) & (reliability: 890.0) &  (original description: no original description)","protein_coding"
"PSME_00037600-RA","No alias","Pseudotsuga menziesii","(at4g02750 : 501.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). & (q76c99|rf1_orysa : 91.3) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 912.0) &  (original description: no original description)","protein_coding"
"PSME_00037765-RA","No alias","Pseudotsuga menziesii","(at5g53140 : 188.0) Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C,  manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT5G10740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 376.0) &  (original description: no original description)","protein_coding"
"PSME_00037785-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00038005-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00038414-RA","No alias","Pseudotsuga menziesii","(at5g07280 : 1132.0) Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther.; EXCESS MICROSPOROCYTES1 (EMS1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT4G20140.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p93194|rpk1_iponi : 454.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 2264.0) &  (original description: no original description)","protein_coding"
"PSME_00038654-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 478.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 956.0) &  (original description: no original description)","protein_coding"
"PSME_00038797-RA","No alias","Pseudotsuga menziesii","(at1g55850 : 169.0) encodes a protein similar to cellulose synthase; cellulose synthase like E1 (CSLE1); FUNCTIONS IN: cellulose synthase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: plant-type cell wall biogenesis, cellulose biosynthetic process, polysaccharide biosynthetic process; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase like G2 (TAIR:AT4G24000.1); Has 2588 Blast hits to 1976 proteins in 305 species: Archae - 7; Bacteria - 382; Metazoa - 5; Fungi - 13; Plants - 2129; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). & (reliability: 338.0) &  (original description: no original description)","protein_coding"
"PSME_00038995-RA","No alias","Pseudotsuga menziesii","(p28002|comt1_medsa : 230.0) Caffeic acid 3-O-methyltransferase (EC 2.1.1.68) (S-adenosysl-L-methionine:caffeic acid 3-O-methyltransferase) (COMT) (CAOMT) - Medicago sativa (Alfalfa) & (at5g54160 : 216.0) A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay.  AtOMT1 (At5g54160) encodes a flavonol 3í-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3í-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase; O-methyltransferase 1 (OMT1); FUNCTIONS IN: myricetin 3'-O-methyltransferase activity, quercetin 3-O-methyltransferase activity, caffeate O-methyltransferase activity; INVOLVED IN: lignin biosynthetic process, flavonol biosynthetic process; LOCATED IN: cytosol, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G77520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 416.0) &  (original description: no original description)","protein_coding"
"PSME_00039107-RA","No alias","Pseudotsuga menziesii","(at2g22125 : 155.0) binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Armadillo-like helical (InterPro:IPR011989), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (TAIR:AT1G77460.2); Has 7763 Blast hits to 3084 proteins in 288 species: Archae - 8; Bacteria - 60; Metazoa - 1765; Fungi - 937; Plants - 4329; Viruses - 0; Other Eukaryotes - 664 (source: NCBI BLink). & (reliability: 310.0) &  (original description: no original description)","protein_coding"
"PSME_00039351-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00039582-RA","No alias","Pseudotsuga menziesii","(at3g29770 : 125.0) Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco. This protein does not act on methyl IAA, methyl JA, MeSA, MeGA4, or MEGA9 in vitro.; methyl esterase 11 (MES11); FUNCTIONS IN: hydrolase activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: methyl esterase 13 (TAIR:AT1G26360.1); Has 2947 Blast hits to 2945 proteins in 736 species: Archae - 12; Bacteria - 1724; Metazoa - 69; Fungi - 61; Plants - 638; Viruses - 1; Other Eukaryotes - 442 (source: NCBI BLink). & (reliability: 228.0) &  (original description: no original description)","protein_coding"
"PSME_00039703-RA","No alias","Pseudotsuga menziesii","(at3g10640 : 340.0) VPS60.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G04850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 680.0) &  (original description: no original description)","protein_coding"
"PSME_00039776-RA","No alias","Pseudotsuga menziesii","(at5g17540 : 323.0) HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (TAIR:AT3G03480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o24645|hcbt1_diaca : 181.0) Anthranilate N-benzoyltransferase protein 1 (EC 2.3.1.144) (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 1) - Dianthus caryophyllus (Carnation) (Clove pink) & (reliability: 646.0) &  (original description: no original description)","protein_coding"
"PSME_00039909-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00039952-RA","No alias","Pseudotsuga menziesii","(at5g05290 : 224.0) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio); expansin A2 (EXPA2); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Expansin (InterPro:IPR002963), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A8 (TAIR:AT2G40610.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q9m4x7|expa6_orysa : 224.0) Expansin-A6 precursor (OsEXPA6) (Alpha-expansin-6) (OsEXP6) (OsaEXPa1.24) - Oryza sativa (Rice) & (reliability: 448.0) &  (original description: no original description)","protein_coding"
"PSME_00040162-RA","No alias","Pseudotsuga menziesii","(at4g02050 : 508.0) sugar transporter protein 7 (STP7); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G26340.1); Has 26348 Blast hits to 25870 proteins in 1897 species: Archae - 376; Bacteria - 11847; Metazoa - 3711; Fungi - 6732; Plants - 2516; Viruses - 0; Other Eukaryotes - 1166 (source: NCBI BLink). & (q10710|sta_ricco : 506.0) Sugar carrier protein A - Ricinus communis (Castor bean) & (reliability: 1016.0) &  (original description: no original description)","protein_coding"
"PSME_00040309-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00040397-RA","No alias","Pseudotsuga menziesii","(at5g53390 : 247.0) O-acyltransferase (WSD1-like) family protein; CONTAINS InterPro DOMAIN/s: O-acyltransferase, WSD1, C-terminal (InterPro:IPR009721), O-acyltransferase, WSD1, N-terminal (InterPro:IPR004255); BEST Arabidopsis thaliana protein match is: O-acyltransferase (WSD1-like) family protein (TAIR:AT2G38995.2); Has 1220 Blast hits to 1207 proteins in 180 species: Archae - 4; Bacteria - 957; Metazoa - 16; Fungi - 0; Plants - 224; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). & (reliability: 448.0) &  (original description: no original description)","protein_coding"
"PSME_00040455-RA","No alias","Pseudotsuga menziesii","(at5g03300 : 216.0) Encodes adenosine kinase 2 (ADK2), a typical, constitutively expressed housekeeping enzyme. Shows a high sequence identity with ADK1. Involved in salvage synthesis of adenylates and methyl recycling. Enzyme activity is substantially inhibited in roots, siliques and dry seeds by an unknown compound. May contribute to cytokinin interconversion.; adenosine kinase 2 (ADK2); FUNCTIONS IN: adenosine kinase activity, copper ion binding, kinase activity; INVOLVED IN: adenosine salvage; LOCATED IN: plasma membrane; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173), Adenosine kinase (InterPro:IPR001805); BEST Arabidopsis thaliana protein match is: adenosine kinase 1 (TAIR:AT3G09820.1); Has 9730 Blast hits to 9724 proteins in 1887 species: Archae - 143; Bacteria - 5874; Metazoa - 382; Fungi - 207; Plants - 398; Viruses - 0; Other Eukaryotes - 2726 (source: NCBI BLink). & (o49923|adk_phypa : 191.0) Adenosine kinase (EC 2.7.1.20) (AK) (Adenosine 5'-phosphotransferase) - Physcomitrella patens (Moss) & (reliability: 432.0) &  (original description: no original description)","protein_coding"
"PSME_00040476-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 173.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 346.0) &  (original description: no original description)","protein_coding"
"PSME_00040510-RA","No alias","Pseudotsuga menziesii","(at1g09760 : 87.8) U2 small nuclear ribonucleoprotein A (U2A'); INVOLVED IN: nuclear mRNA splicing, via spliceosome, response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U2A&apos;/phosphoprotein 32 family A, C-terminal (InterPro:IPR003603); Has 8109 Blast hits to 6297 proteins in 450 species: Archae - 0; Bacteria - 3635; Metazoa - 3194; Fungi - 303; Plants - 219; Viruses - 2; Other Eukaryotes - 756 (source: NCBI BLink). & (reliability: 175.6) &  (original description: no original description)","protein_coding"
"PSME_00040598-RA","No alias","Pseudotsuga menziesii","(at1g15950 : 170.0) Encodes a cinnamoyl CoA reductase. Involved in lignin biosynthesis.; cinnamoyl coa reductase 1 (CCR1); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: cinnamoyl coa reductase (TAIR:AT1G80820.1); Has 11995 Blast hits to 11983 proteins in 1896 species: Archae - 218; Bacteria - 5371; Metazoa - 416; Fungi - 931; Plants - 2539; Viruses - 54; Other Eukaryotes - 2466 (source: NCBI BLink). & (reliability: 340.0) &  (original description: no original description)","protein_coding"
"PSME_00040620-RA","No alias","Pseudotsuga menziesii","(at3g04520 : 111.0) Encodes a threonine aldolase, involved in threonine degradation to glycine. Expressed in vascular tissue through out the plant.; threonine aldolase 2 (THA2); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aromatic amino acid beta-eliminating lyase/threonine aldolase (InterPro:IPR001597), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: threonine aldolase 1 (TAIR:AT1G08630.4). & (reliability: 222.0) &  (original description: no original description)","protein_coding"
"PSME_00040654-RA","No alias","Pseudotsuga menziesii","(at5g06050 : 251.0) Putative methyltransferase family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT2G39750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 502.0) &  (original description: no original description)","protein_coding"
"PSME_00040663-RA","No alias","Pseudotsuga menziesii",""(at3g52970 : 273.0) member of CYP76G; ""cytochrome P450, family 76, subfamily G, polypeptide 1"" (CYP76G1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 76, subfamily C, polypeptide 4 (TAIR:AT2G45550.1). & (p48418|c75a1_pethy : 265.0) Flavonoid 3',5'-hydroxylase 1 (EC 1.14.13.88) (F3'5'H) (Cytochrome P450 75A1) (CYPLXXVA1) - Petunia hybrida (Petunia) & (reliability: 502.0) &  (original description: no original description)"","protein_coding"
"PSME_00040826-RA","No alias","Pseudotsuga menziesii","(at5g63930 : 192.0) Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT2G33170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p93194|rpk1_iponi : 171.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 346.0) &  (original description: no original description)","protein_coding"
"PSME_00040996-RA","No alias","Pseudotsuga menziesii","(at5g51980 : 102.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: zinc finger WD40 repeat protein 1 (TAIR:AT4G25440.1); Has 29113 Blast hits to 15916 proteins in 570 species: Archae - 36; Bacteria - 4384; Metazoa - 10765; Fungi - 6879; Plants - 3369; Viruses - 0; Other Eukaryotes - 3680 (source: NCBI BLink). & (reliability: 204.0) &  (original description: no original description)","protein_coding"
"PSME_00041033-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 446.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 892.0) &  (original description: no original description)","protein_coding"
"PSME_00041687-RA","No alias","Pseudotsuga menziesii","(at3g03740 : 146.0) BTB-POZ and MATH domain 4 (BPM4); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 5789 Blast hits to 5682 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 3860; Fungi - 138; Plants - 1466; Viruses - 48; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 280.0) &  (original description: no original description)","protein_coding"
"PSME_00041727-RA","No alias","Pseudotsuga menziesii","(at5g23540 : 187.0) Mov34/MPN/PAD-1 family protein; INVOLVED IN: response to salt stress, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9-signalosome 5B (TAIR:AT1G71230.1); Has 1553 Blast hits to 1553 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 704; Fungi - 411; Plants - 244; Viruses - 0; Other Eukaryotes - 194 (source: NCBI BLink). & (reliability: 374.0) &  (original description: no original description)","protein_coding"
"PSME_00041820-RA","No alias","Pseudotsuga menziesii","(at2g02250 : 162.0) phloem protein 2-B2 (PP2-B2); FUNCTIONS IN: carbohydrate binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G02240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 324.0) &  (original description: no original description)","protein_coding"
"PSME_00042066-RA","No alias","Pseudotsuga menziesii","(at3g48080 : 208.0) alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: lipase activity, triglyceride lipase activity, signal transducer activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G48090.1); Has 522 Blast hits to 472 proteins in 44 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 2; Plants - 484; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). & (reliability: 416.0) &  (original description: no original description)","protein_coding"
"PSME_00042067-RA","No alias","Pseudotsuga menziesii","(at3g07790 : 251.0) DGCR14-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear protein DGCR14 (InterPro:IPR019148); Has 334 Blast hits to 326 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 84; Plants - 40; Viruses - 21; Other Eukaryotes - 48 (source: NCBI BLink). & (reliability: 502.0) &  (original description: no original description)","protein_coding"
"PSME_00042195-RA","No alias","Pseudotsuga menziesii","(at2g45660 : 177.0) Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of development. AGL20/SOC1 acts with AGL24 to promote flowering and inflorescence meristem identity.AGL20 upregulates expression of AGL24 in response to GA.; AGAMOUS-like 20 (AGL20); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: flower development, response to cold, positive regulation of flower development, maintenance of inflorescence meristem identity; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 42 (TAIR:AT5G62165.3); Has 7364 Blast hits to 7361 proteins in 926 species: Archae - 0; Bacteria - 16; Metazoa - 673; Fungi - 316; Plants - 6262; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). & (q9xj60|mad50_orysa : 171.0) MADS-box transcription factor 50 (OsMADS50) (Protein SUPPRESSOR OF CONSTANS OVEREXPRESSION 1-like) (OsSOC1) (Protein AGAMOUS-like 20) (RMADS208) - Oryza sativa (Rice) & (reliability: 354.0) &  (original description: no original description)","protein_coding"
"PSME_00042277-RA","No alias","Pseudotsuga menziesii","(at1g78370 : 238.0) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).; glutathione S-transferase TAU 20 (GSTU20); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: apoplast, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 19 (TAIR:AT1G78380.1); Has 7354 Blast hits to 7257 proteins in 1180 species: Archae - 0; Bacteria - 3234; Metazoa - 910; Fungi - 219; Plants - 2135; Viruses - 0; Other Eukaryotes - 856 (source: NCBI BLink). & (q03666|gstx4_tobac : 236.0) Probable glutathione S-transferase (EC 2.5.1.18) (Auxin-induced protein PCNT107) - Nicotiana tabacum (Common tobacco) & (reliability: 476.0) &  (original description: no original description)","protein_coding"
"PSME_00042279-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 380.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 760.0) &  (original description: no original description)","protein_coding"
"PSME_00042297-RA","No alias","Pseudotsuga menziesii","(at1g78370 : 236.0) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).; glutathione S-transferase TAU 20 (GSTU20); FUNCTIONS IN: glutathione transferase activity; INVOLVED IN: toxin catabolic process; LOCATED IN: apoplast, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 19 (TAIR:AT1G78380.1); Has 7354 Blast hits to 7257 proteins in 1180 species: Archae - 0; Bacteria - 3234; Metazoa - 910; Fungi - 219; Plants - 2135; Viruses - 0; Other Eukaryotes - 856 (source: NCBI BLink). & (q03666|gstx4_tobac : 227.0) Probable glutathione S-transferase (EC 2.5.1.18) (Auxin-induced protein PCNT107) - Nicotiana tabacum (Common tobacco) & (reliability: 472.0) &  (original description: no original description)","protein_coding"
"PSME_00042356-RA","No alias","Pseudotsuga menziesii","(at1g09830 : 429.0) glycinamide ribonucleotide synthetase (GAR synthetase) that catalyzes the conversion of phosphoribosyl amine to phosphoribosyl glycineamide; Glycinamide ribonucleotide (GAR) synthetase; FUNCTIONS IN: phosphoribosylamine-glycine ligase activity; INVOLVED IN: purine base biosynthetic process, purine nucleotide biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosylglycinamide synthetase, conserved site (InterPro:IPR020559), Phosphoribosylglycinamide synthetase, C-domain (InterPro:IPR020560), Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain (InterPro:IPR020561), ATP-grasp fold, subdomain 1 (InterPro:IPR013815), PreATP-grasp-like fold (InterPro:IPR016185), Phosphoribosylglycinamide synthetase, N-domain (InterPro:IPR020562), ATP-grasp fold (InterPro:IPR011761), ATP-grasp fold, subdomain 2 (InterPro:IPR013816), Pre-ATP-grasp fold (InterPro:IPR013817), Rudiment single hybrid motif (InterPro:IPR011054), Phosphoribosylglycinamide synthetase (InterPro:IPR000115); Has 12648 Blast hits to 12644 proteins in 2666 species: Archae - 340; Bacteria - 7373; Metazoa - 216; Fungi - 226; Plants - 88; Viruses - 0; Other Eukaryotes - 4405 (source: NCBI BLink). & (p52421|pur2_vigun : 280.0) Phosphoribosylamine--glycine ligase (EC 6.3.4.13) (GARS) (Glycinamide ribonucleotide synthetase) (Phosphoribosylglycinamide synthetase) (Fragment) - Vigna unguiculata (Cowpea) & (reliability: 858.0) &  (original description: no original description)","protein_coding"
"PSME_00042513-RA","No alias","Pseudotsuga menziesii","(at3g01015 : 93.2) TPX2 (targeting protein for Xklp2) protein family; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT5G15510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 186.4) &  (original description: no original description)","protein_coding"
"PSME_00042538-RA","No alias","Pseudotsuga menziesii","(at1g17220 : 216.0) Encodes a chloroplast localized protein with similarity to translation initiation factor 2. Can complement loss of INFB in E.coli suggesting FUG1 does function as a translation initiation factor in vivo. Identified as a suppressor of the leaf variegation mutant var2-6. Suppression is only seen in hypomorphs as complete loss of function alleles are embryo lethal.; fu-gaeri1 (FUG1); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor IF-2, N-terminal (InterPro:IPR006847), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Initiation factor 2 (InterPro:IPR000178), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Translation initiation factor 2, small GTP-binding protein (TAIR:AT4G11160.1); Has 64472 Blast hits to 64325 proteins in 4737 species: Archae - 1215; Bacteria - 42273; Metazoa - 2198; Fungi - 2344; Plants - 1110; Viruses - 4; Other Eukaryotes - 15328 (source: NCBI BLink). & (p57997|if2c_phavu : 210.0) Translation initiation factor IF-2, chloroplast precursor (PvIF2cp) - Phaseolus vulgaris (Kidney bean) (French bean) & (reliability: 432.0) &  (original description: no original description)","protein_coding"
"PSME_00042618-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00042840-RA","No alias","Pseudotsuga menziesii","(at5g56710 : 181.0) Ribosomal protein L31e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L31e (InterPro:IPR000054); BEST Arabidopsis thaliana protein match is: Ribosomal protein L31e family protein (TAIR:AT4G26230.1); Has 842 Blast hits to 842 proteins in 260 species: Archae - 2; Bacteria - 0; Metazoa - 430; Fungi - 129; Plants - 169; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). & (q9mav7|rl31_pangi : 177.0) 60S ribosomal protein L31 - Panax ginseng (Korean ginseng) & (reliability: 362.0) &  (original description: no original description)","protein_coding"
"PSME_00042883-RA","No alias","Pseudotsuga menziesii","(at1g09820 : 125.0) Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1); Has 57260 Blast hits to 15041 proteins in 306 species: Archae - 1; Bacteria - 71; Metazoa - 917; Fungi - 972; Plants - 53378; Viruses - 0; Other Eukaryotes - 1921 (source: NCBI BLink). & (q76c99|rf1_orysa : 103.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 236.0) &  (original description: no original description)","protein_coding"
"PSME_00042975-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 476.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 952.0) &  (original description: no original description)","protein_coding"
"PSME_00042980-RA","No alias","Pseudotsuga menziesii","(at1g80160 : 211.0) Lactoylglutathione lyase / glyoxalase I family protein; FUNCTIONS IN: lactoylglutathione lyase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Lactoylglutathione lyase / glyoxalase I family protein (TAIR:AT1G15380.2); Has 148 Blast hits to 148 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 422.0) &  (original description: no original description)","protein_coding"
"PSME_00042986-RA","No alias","Pseudotsuga menziesii","(at5g07050 : 177.0) nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT2G40900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 354.0) &  (original description: no original description)","protein_coding"
"PSME_00043330-RA","No alias","Pseudotsuga menziesii","(at2g47710 : 97.1) Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49050.1); Has 2830 Blast hits to 2747 proteins in 619 species: Archae - 112; Bacteria - 1833; Metazoa - 129; Fungi - 32; Plants - 667; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). & (reliability: 177.2) &  (original description: no original description)","protein_coding"
"PSME_00043758-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00043970-RA","No alias","Pseudotsuga menziesii","(at1g72840 : 99.4) Disease resistance protein (TIR-NBS-LRR class); FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: ovule, embryo, sperm cell, root, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G48770.1). & (reliability: 198.8) &  (original description: no original description)","protein_coding"
"PSME_00044063-RA","No alias","Pseudotsuga menziesii","(at1g15460 : 206.0) Encodes a efflux-type boron transporter. Over-expression improved plant growth under B toxic conditions.; REQUIRES HIGH BORON 4 (BOR4); CONTAINS InterPro DOMAIN/s: Bicarbonate transporter, eukaryotic (InterPro:IPR003020), Bicarbonate transporter, C-terminal (InterPro:IPR011531); BEST Arabidopsis thaliana protein match is: HCO3- transporter family (TAIR:AT1G74810.1); Has 2623 Blast hits to 1400 proteins in 194 species: Archae - 0; Bacteria - 4; Metazoa - 1965; Fungi - 314; Plants - 231; Viruses - 2; Other Eukaryotes - 107 (source: NCBI BLink). & (reliability: 412.0) &  (original description: no original description)","protein_coding"
"PSME_00044073-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00044273-RA","No alias","Pseudotsuga menziesii","(at3g47570 : 93.6) Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G47580.1); Has 213556 Blast hits to 133070 proteins in 4776 species: Archae - 194; Bacteria - 22980; Metazoa - 68117; Fungi - 10236; Plants - 86850; Viruses - 328; Other Eukaryotes - 24851 (source: NCBI BLink). & (reliability: 169.4) &  (original description: no original description)","protein_coding"
"PSME_00044337-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 461.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 922.0) &  (original description: no original description)","protein_coding"
"PSME_00044567-RA","No alias","Pseudotsuga menziesii","(at1g74800 : 363.0) Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT5G62620.1); Has 2254 Blast hits to 2220 proteins in 111 species: Archae - 0; Bacteria - 6; Metazoa - 1612; Fungi - 6; Plants - 579; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink). & (reliability: 718.0) &  (original description: no original description)","protein_coding"
"PSME_00044607-RA","No alias","Pseudotsuga menziesii","(at3g19430 : 323.0) late embryogenesis abundant protein-related / LEA protein-related; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) protein-related (TAIR:AT5G60520.1); Has 407828 Blast hits to 124211 proteins in 3571 species: Archae - 1492; Bacteria - 100012; Metazoa - 145570; Fungi - 58500; Plants - 39690; Viruses - 10531; Other Eukaryotes - 52033 (source: NCBI BLink). & (reliability: 646.0) &  (original description: no original description)","protein_coding"
"PSME_00044907-RA","No alias","Pseudotsuga menziesii","(at3g07130 : 189.0) Encodes PAP15, a purple acid phosphatase with phytase activity.  Expression of PAP15 is developmentally and temporally regulated, with strong expression at the early stages of seedling growth and pollen germination. The expression is also organ/tissue-specific, with strongest expression in the vasculature, pollen grains, and roots. Recombinant PAP protein exhibits broad substrate specificity with moderate phytase activity. PAP15 likely mobilizes phosphorus reserves in plants, particularly during seed and pollen germination.; purple acid phosphatase 15 (PAP15); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: pollen germination, seed germination; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: seedling growth, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 13 (TAIR:AT2G32770.3); Has 2322 Blast hits to 2305 proteins in 472 species: Archae - 7; Bacteria - 914; Metazoa - 228; Fungi - 75; Plants - 768; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink). & (q09131|ppaf_soybn : 106.0) Purple acid phosphatase precursor (EC 3.1.3.2) (Manganese(II) purple acid phosphatase) - Glycine max (Soybean) & (reliability: 378.0) &  (original description: no original description)","protein_coding"
"PSME_00045058-RA","No alias","Pseudotsuga menziesii","(at4g37470 : 213.0) alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G03990.1); Has 8593 Blast hits to 8591 proteins in 1653 species: Archae - 86; Bacteria - 6869; Metazoa - 120; Fungi - 103; Plants - 302; Viruses - 19; Other Eukaryotes - 1094 (source: NCBI BLink). & (reliability: 426.0) &  (original description: no original description)","protein_coding"
"PSME_00045189-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00045317-RA","No alias","Pseudotsuga menziesii","(at3g13224 : 253.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G40490.1); Has 77800 Blast hits to 37058 proteins in 1622 species: Archae - 33; Bacteria - 18580; Metazoa - 32661; Fungi - 6344; Plants - 11400; Viruses - 392; Other Eukaryotes - 8390 (source: NCBI BLink). & (q08935|roc1_nicsy : 89.0) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A) - Nicotiana sylvestris (Wood tobacco) & (reliability: 506.0) &  (original description: no original description)","protein_coding"
"PSME_00045565-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 382.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 764.0) &  (original description: no original description)","protein_coding"
"PSME_00045881-RA","No alias","Pseudotsuga menziesii","(at1g68750 : 100.0) Encodes one of four Arabidopsis phosphoenolpyruvate (PEP) carboxylase proteins. But, it is more similar to bacterial PEP carboxylase than plant PEP carboxylase. Efforts to express this enzyme and to demonstrate its enzymatic activity in E.coli failed.; phosphoenolpyruvate carboxylase 4 (PPC4); CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Phosphoenolpyruvate carboxylase, active site (InterPro:IPR018129), Phosphoenolpyruvate carboxylase (InterPro:IPR001449), Phosphoenolpyruvate carboxylase, C-terminal region (InterPro:IPR021135); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxylase 1 (TAIR:AT1G53310.3); Has 9944 Blast hits to 6686 proteins in 1878 species: Archae - 54; Bacteria - 5038; Metazoa - 4; Fungi - 0; Plants - 1854; Viruses - 0; Other Eukaryotes - 2994 (source: NCBI BLink). & (q9au12|capp_phavu : 80.9) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase) (PEPC) - Phaseolus vulgaris (Kidney bean) (French bean) & (reliability: 200.0) &  (original description: no original description)","protein_coding"
"PSME_00046024-RA","No alias","Pseudotsuga menziesii","(at1g69870 : 479.0) Encodes a low affinity nitrate transporter NRT1.7.  Expressed in phloem.  Responsible for source-to-sink remobilization of nitrate.; nitrate transporter 1.7 (NRT1.7); FUNCTIONS IN: low affinity nitrate transmembrane transporter activity, transporter activity; INVOLVED IN: oligopeptide transport, response to salt stress, nitrate transport, low affinity nitrate transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1.6 (TAIR:AT1G27080.1); Has 4600 Blast hits to 4423 proteins in 820 species: Archae - 0; Bacteria - 1236; Metazoa - 519; Fungi - 428; Plants - 2212; Viruses - 0; Other Eukaryotes - 205 (source: NCBI BLink). & (reliability: 958.0) &  (original description: no original description)","protein_coding"
"PSME_00046055-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00046129-RA","No alias","Pseudotsuga menziesii","(q9sp07|1433_lillo : 345.0) 14-3-3-like protein - Lilium longiflorum (Trumpet lily) & (at5g38480 : 330.0) general regulatory factor, a 14-3-3 gene; general regulatory factor 3 (GRF3); FUNCTIONS IN: protein phosphorylated amino acid binding, ATP binding; LOCATED IN: mitochondrion, cell wall, chloroplast, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 7 (TAIR:AT3G02520.1); Has 2749 Blast hits to 2739 proteins in 391 species: Archae - 0; Bacteria - 6; Metazoa - 1263; Fungi - 337; Plants - 766; Viruses - 0; Other Eukaryotes - 377 (source: NCBI BLink). & (reliability: 660.0) &  (original description: no original description)","protein_coding"
"PSME_00046415-RA","No alias","Pseudotsuga menziesii","(at2g41790 : 265.0) Insulinase (Peptidase family M16) family protein; FUNCTIONS IN: metalloendopeptidase activity, zinc ion binding, catalytic activity, metal ion binding; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M16, zinc-binding site (InterPro:IPR001431), Peptidase M16, C-terminal (InterPro:IPR007863), Peptidase M16, N-terminal (InterPro:IPR011765), Metalloenzyme, LuxS/M16 peptidase-like, metal-binding (InterPro:IPR011249), Peptidase M16, core (InterPro:IPR011237); BEST Arabidopsis thaliana protein match is: Insulinase (Peptidase family M16) family protein (TAIR:AT3G57470.2); Has 9660 Blast hits to 9541 proteins in 2186 species: Archae - 9; Bacteria - 6247; Metazoa - 831; Fungi - 633; Plants - 271; Viruses - 3; Other Eukaryotes - 1666 (source: NCBI BLink). & (reliability: 530.0) &  (original description: no original description)","protein_coding"
"PSME_00046487-RA","No alias","Pseudotsuga menziesii","(at1g47420 : 161.0) succinate dehydrogenase 5 (SDH5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase 2 (TAIR:AT1G47260.1); Has 145 Blast hits to 145 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 322.0) &  (original description: no original description)","protein_coding"
"PSME_00046578-RA","No alias","Pseudotsuga menziesii","(p51110|dfra_vitvi : 235.0) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR) (Dihydrokaempferol 4-reductase) - Vitis vinifera (Grape) & (at5g42800 : 224.0) dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins.; dihydroflavonol 4-reductase (DFR); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G45400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 448.0) &  (original description: no original description)","protein_coding"
"PSME_00046744-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00046902-RA","No alias","Pseudotsuga menziesii","(at2g31840 : 149.0) Thioredoxin superfamily protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28590.1); Has 792 Blast hits to 656 proteins in 115 species: Archae - 0; Bacteria - 18; Metazoa - 243; Fungi - 77; Plants - 88; Viruses - 24; Other Eukaryotes - 342 (source: NCBI BLink). & (reliability: 298.0) &  (original description: no original description)","protein_coding"
"PSME_00047074-RA","No alias","Pseudotsuga menziesii","(at5g04770 : 612.0) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Does not mediate efficient uptake of basic amino acids in yeast or Xenopus systems but can transport neutral and acidic amino acid analogs. Expressed in sink tissues. Induced during infestation of roots by the plant parasitic root-knot nematode, Meloidogyne incognita. Localized in the plasma membrane.; cationic amino acid transporter 6 (CAT6); CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 7 (TAIR:AT3G10600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1224.0) &  (original description: no original description)","protein_coding"
"PSME_00047075-RA","No alias","Pseudotsuga menziesii","(at3g07130 : 122.0) Encodes PAP15, a purple acid phosphatase with phytase activity.  Expression of PAP15 is developmentally and temporally regulated, with strong expression at the early stages of seedling growth and pollen germination. The expression is also organ/tissue-specific, with strongest expression in the vasculature, pollen grains, and roots. Recombinant PAP protein exhibits broad substrate specificity with moderate phytase activity. PAP15 likely mobilizes phosphorus reserves in plants, particularly during seed and pollen germination.; purple acid phosphatase 15 (PAP15); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: pollen germination, seed germination; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: seedling growth, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 13 (TAIR:AT2G32770.3); Has 2322 Blast hits to 2305 proteins in 472 species: Archae - 7; Bacteria - 914; Metazoa - 228; Fungi - 75; Plants - 768; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink). & (reliability: 244.0) &  (original description: no original description)","protein_coding"
"PSME_00047118-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 226.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 452.0) &  (original description: no original description)","protein_coding"
"PSME_00047286-RA","No alias","Pseudotsuga menziesii","(at1g47900 : 299.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053), Protein of unknown function DUF869, plant (InterPro:IPR008587); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF869) (TAIR:AT1G19835.2). & (reliability: 598.0) &  (original description: no original description)","protein_coding"
"PSME_00047513-RA","No alias","Pseudotsuga menziesii","(at1g63660 : 367.0) GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative; FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity, GMP synthase (glutamine-hydrolyzing) activity, catalytic activity, ATP binding; INVOLVED IN: GMP biosynthetic process, glutamine metabolic process, biosynthetic process, asparagine biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Glutamine amidotransferase class-I, C-terminal (InterPro:IPR000991), Glutamine amidotransferase superfamily (InterPro:IPR011702), GMP synthase, N-terminal (InterPro:IPR004739), Glutamine amidotransferase type 1 (InterPro:IPR017926), Asparagine synthase (InterPro:IPR001962), Anthranilate synthase component II/delta crystallin (InterPro:IPR006220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 734.0) &  (original description: no original description)","protein_coding"
"PSME_00047686-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00047811-RA","No alias","Pseudotsuga menziesii","(at3g13770 : 243.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 37890 Blast hits to 13461 proteins in 236 species: Archae - 0; Bacteria - 8; Metazoa - 36; Fungi - 51; Plants - 37361; Viruses - 0; Other Eukaryotes - 434 (source: NCBI BLink). & (reliability: 486.0) &  (original description: no original description)","protein_coding"
"PSME_00047947-RA","No alias","Pseudotsuga menziesii","(at1g27480 : 273.0) alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: phosphatidylcholine-sterol O-acyltransferase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lecithin:cholesterol acyltransferase (InterPro:IPR003386); Has 1076 Blast hits to 1070 proteins in 248 species: Archae - 0; Bacteria - 41; Metazoa - 667; Fungi - 0; Plants - 226; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink). & (reliability: 546.0) &  (original description: no original description)","protein_coding"
"PSME_00047975-RA","No alias","Pseudotsuga menziesii","(at2g23940 : 194.0) Protein of unknown function (DUF788); LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF788 (InterPro:IPR008506); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF788) (TAIR:AT4G30500.1); Has 311 Blast hits to 311 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 117; Fungi - 102; Plants - 52; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink). & (reliability: 388.0) &  (original description: no original description)","protein_coding"
"PSME_00047985-RA","No alias","Pseudotsuga menziesii","(at1g66910 : 310.0) Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G66930.1); Has 113951 Blast hits to 112305 proteins in 4393 species: Archae - 178; Bacteria - 12361; Metazoa - 42729; Fungi - 9627; Plants - 32494; Viruses - 324; Other Eukaryotes - 16238 (source: NCBI BLink). & (p17801|kpro_maize : 186.0) Putative receptor protein kinase ZmPK1 precursor (EC 2.7.11.1) - Zea mays (Maize) & (reliability: 594.0) &  (original description: no original description)","protein_coding"
"PSME_00047994-RA","No alias","Pseudotsuga menziesii","(at3g16230 : 224.0) Predicted eukaryotic LigT; FUNCTIONS IN: RNA binding, catalytic activity; INVOLVED IN: RNA metabolic process, regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088), Predicted eukaryotic LigT (InterPro:IPR009210), RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), Protein kinase A anchor protein, nuclear localisation signal domain (InterPro:IPR019510); BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT (TAIR:AT3G16220.1). & (reliability: 448.0) &  (original description: no original description)","protein_coding"
"PSME_00048141-RA","No alias","Pseudotsuga menziesii","(at5g57090 : 409.0) Encodes an auxin efflux carrier that is similar to bacterial membrane transporters. Root-specific role in the transport of auxin. Acts downstream of CTR1 and ethylene biosynthesis, in the same pathway as EIN2 and AUX1, and independent from EIN3 and EIN5/AIN1 pathway. In the root, the protein localizes apically in epidermal and lateral root cap cells and predominantly basally in cortical cells. Functions may be regulated by phosphorylation status. EIR1 expression is induced by brassinolide treatment in the brassinosteroid-insensitive br1 mutant. Gravistimulation resulted in asymmetric PIN2 distribution, with more protein degraded at the upper side of the gravistimulated root. Protein turnover is affected by the proteasome and by endosomal cycling. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific  to auxins and sensitive to auxin transport inhibitors. Membrane sterol composition is essential for the acquisition of  PIN2 polarity.; ETHYLENE INSENSITIVE ROOT 1 (EIR1); CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT2G01420.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q5smq9|pin1_orysa : 374.0) Auxin efflux carrier component 1 (OsPIN1) (Ethylene insensitive root 1 homolog) - Oryza sativa (Rice) & (reliability: 818.0) &  (original description: no original description)","protein_coding"
"PSME_00048394-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00048615-RA","No alias","Pseudotsuga menziesii","(at1g47420 : 97.4) succinate dehydrogenase 5 (SDH5); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase 2 (TAIR:AT1G47260.1); Has 145 Blast hits to 145 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 194.8) &  (original description: no original description)","protein_coding"
"PSME_00048898-RA","No alias","Pseudotsuga menziesii","(at3g17450 : 86.7) hAT dimerisation domain-containing protein; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 1280 Blast hits to 918 proteins in 67 species: Archae - 0; Bacteria - 8; Metazoa - 57; Fungi - 19; Plants - 1102; Viruses - 13; Other Eukaryotes - 81 (source: NCBI BLink). & (reliability: 173.4) &  (original description: no original description)","protein_coding"
"PSME_00048944-RA","No alias","Pseudotsuga menziesii","(at5g66460 : 360.0) Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, 4 leaf senescence stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT3G10890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 720.0) &  (original description: no original description)","protein_coding"
"PSME_00048947-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00048990-RA","No alias","Pseudotsuga menziesii","(at3g33520 : 234.0) Encodes ACTIN-RELATED PROTEIN6 (ARP6), a putative component of a chromatin-remodeling complex. Required for both histone acetylation and methylation of the FLC chromatin in Arabidopsis.  Along with PIE1 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6).  Incorporation of this variant histone into chromatin mediates the ambient temperature response. Located at specific regions of the nuclear periphery. Expression throughout plants shown by in-situ and immunolocalization methods. Mutants show defects in fertility, leaf, flower and inflorescence development and shorter flowering times.  ARP6 also is involved in globally controlling developmental responses to ambient temperature.; actin-related protein 6 (ARP6); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1); Has 12358 Blast hits to 12072 proteins in 2463 species: Archae - 0; Bacteria - 4; Metazoa - 5326; Fungi - 3155; Plants - 1501; Viruses - 2; Other Eukaryotes - 2370 (source: NCBI BLink). & (p20904|act_volca : 80.9) Actin - Volvox carteri & (reliability: 468.0) &  (original description: no original description)","protein_coding"
"PSME_00049373-RA","No alias","Pseudotsuga menziesii","(at5g06050 : 232.0) Putative methyltransferase family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT2G39750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 464.0) &  (original description: no original description)","protein_coding"
"PSME_00049375-RA","No alias","Pseudotsuga menziesii","(at4g25050 : 122.0) encodes an acyl carrier protein predominantly expressed in leaves. Gene expression is upregulated by light.; acyl carrier protein 4 (ACP4); CONTAINS InterPro DOMAIN/s: Acyl carrier protein-like (InterPro:IPR009081); BEST Arabidopsis thaliana protein match is: acyl carrier protein 1 (TAIR:AT3G05020.1). & (p02902|acp1_horvu : 109.0) Acyl carrier protein 1, chloroplast precursor (Acyl carrier protein I) (ACP I) - Hordeum vulgare (Barley) & (reliability: 244.0) &  (original description: no original description)","protein_coding"
"PSME_00049416-RA","No alias","Pseudotsuga menziesii","(at5g04895 : 370.0) DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: double-stranded RNA binding, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, intracellular; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), Double-stranded RNA-binding (InterPro:IPR001159), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT1G48650.2); Has 12653 Blast hits to 8846 proteins in 1499 species: Archae - 0; Bacteria - 5024; Metazoa - 2916; Fungi - 1709; Plants - 1004; Viruses - 56; Other Eukaryotes - 1944 (source: NCBI BLink). & (reliability: 740.0) &  (original description: no original description)","protein_coding"
"PSME_00049690-RA","No alias","Pseudotsuga menziesii","(at4g23140 : 271.0) Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307); cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (CRK6); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (TAIR:AT4G23160.1); Has 119608 Blast hits to 118061 proteins in 4543 species: Archae - 108; Bacteria - 13357; Metazoa - 44377; Fungi - 10093; Plants - 34036; Viruses - 376; Other Eukaryotes - 17261 (source: NCBI BLink). & (q8lkz1|nork_pea : 173.0) Nodulation receptor kinase precursor (EC 2.7.11.1) - Pisum sativum (Garden pea) & (reliability: 528.0) &  (original description: no original description)","protein_coding"
"PSME_00049835-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00050208-RA","No alias","Pseudotsuga menziesii","(at5g04870 : 235.0) A calcium-dependent protein kinase that can phosphorylate phenylalanine ammonia lyase (PAL), a key enzyme in pathogen defense.; calcium dependent protein kinase 1 (CPK1); FUNCTIONS IN: protein binding, calmodulin-dependent protein kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: peroxisome, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calmodulin-domain protein kinase cdpk isoform 2 (TAIR:AT3G10660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p53684|cdpk3_orysa : 228.0) Calcium-dependent protein kinase, isoform 11 (EC 2.7.11.1) (CDPK 11) - Oryza sativa (Rice) & (reliability: 452.0) &  (original description: no original description)","protein_coding"
"PSME_00050239-RA","No alias","Pseudotsuga menziesii","(at4g33470 : 233.0) Encodes HDA14, a member of the histone deacetylase family proteins.; histone deacetylase 14 (hda14); FUNCTIONS IN: histone deacetylase activity; INVOLVED IN: histone deacetylation; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 466.0) &  (original description: no original description)","protein_coding"
"PSME_00050330-RA","No alias","Pseudotsuga menziesii","(at4g38620 : 248.0) Encodes a R2R3 MYB protein which is involved in the response to UV-B.  It functions as a repressor of target gene expression.  One of its target genes encodes cinnamate 4-hydroxylase; mutants accumulate sinapate esters in their leaves. MYB4 binds to its own promoter and represses its own expression. Nuclear localization of MYB4 depends on the action of the beta importin SAD2.; myb domain protein 4 (MYB4); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 32 (TAIR:AT4G34990.1); Has 9208 Blast hits to 8453 proteins in 515 species: Archae - 0; Bacteria - 0; Metazoa - 855; Fungi - 510; Plants - 6018; Viruses - 3; Other Eukaryotes - 1822 (source: NCBI BLink). & (p20025|myb38_maize : 247.0) Myb-related protein Zm38 - Zea mays (Maize) & (reliability: 496.0) &  (original description: no original description)","protein_coding"
"PSME_00050335-RA","No alias","Pseudotsuga menziesii","(at2g47900 : 325.0) Member of TLP family; tubby like protein 3 (TLP3); FUNCTIONS IN: phosphoric diester hydrolase activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby-like protein 9 (TAIR:AT3G06380.1). & (reliability: 620.0) &  (original description: no original description)","protein_coding"
"PSME_00050348-RA","No alias","Pseudotsuga menziesii","(at3g52220 : 155.0) CONTAINS InterPro DOMAIN/s: Kinase phosphorylation domain (InterPro:IPR019315); Has 8882 Blast hits to 4920 proteins in 346 species: Archae - 10; Bacteria - 184; Metazoa - 3955; Fungi - 1221; Plants - 712; Viruses - 24; Other Eukaryotes - 2776 (source: NCBI BLink). & (reliability: 310.0) &  (original description: no original description)","protein_coding"
"PSME_00050363-RA","No alias","Pseudotsuga menziesii","(at1g23740 : 280.0) Oxidoreductase, zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Quinone oxidoreductase/zeta-crystallin, conserved site (InterPro:IPR002364), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT4G13010.1); Has 40144 Blast hits to 39997 proteins in 2741 species: Archae - 622; Bacteria - 25898; Metazoa - 1494; Fungi - 3833; Plants - 1284; Viruses - 3; Other Eukaryotes - 7010 (source: NCBI BLink). & (q8h0m1|qorh_spiol : 139.0) Chloroplastic quinone-oxidoreductase homolog (EC 1.-.-.-) (ceQORH) - Spinacia oleracea (Spinach) & (reliability: 560.0) &  (original description: no original description)","protein_coding"
"PSME_00050428-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00050535-RA","No alias","Pseudotsuga menziesii","(at3g50790 : 190.0) esterase/lipase/thioesterase family protein; FUNCTIONS IN: hydrolase activity, carboxylesterase activity; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0017, hydrolase-like, conserved site (InterPro:IPR000952), AB-hydrolase YheT, putative (InterPro:IPR012020), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G49950.1); Has 2554 Blast hits to 2547 proteins in 951 species: Archae - 0; Bacteria - 1494; Metazoa - 334; Fungi - 200; Plants - 135; Viruses - 0; Other Eukaryotes - 391 (source: NCBI BLink). & (reliability: 380.0) &  (original description: no original description)","protein_coding"
"PSME_00050919-RA","No alias","Pseudotsuga menziesii","(at5g65550 : 252.0) UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT5G49690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q43716|ufog_pethy : 219.0) Anthocyanidin 3-O-glucosyltransferase (EC 2.4.1.115) (Flavonol 3-O-glucosyltransferase) (UDP-glucose flavonoid 3-O-glucosyltransferase) (Anthocyanin rhamnosyl transferase) - Petunia hybrida (Petunia) & (reliability: 488.0) &  (original description: no original description)","protein_coding"
"PSME_00050968-RA","No alias","Pseudotsuga menziesii","(at2g03200 : 133.0) Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT1G01300.1); Has 2634 Blast hits to 2609 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 187; Fungi - 441; Plants - 1862; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink). & (reliability: 256.0) &  (original description: no original description)","protein_coding"
"PSME_00051001-RA","No alias","Pseudotsuga menziesii","(q9sbq9|f3ph_pethy : 396.0) Flavonoid 3'-monooxygenase (EC 1.14.13.21) (Flavonoid 3'-hydroxylase) (Cytochrome P450 75B2) - Petunia hybrida (Petunia) & (at5g07990 : 387.0) Required for flavonoid 3' hydroxylase activity.; TRANSPARENT TESTA 7 (TT7); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 706, subfamily A, polypeptide 6 (TAIR:AT4G12320.1); Has 35179 Blast hits to 34934 proteins in 1774 species: Archae - 51; Bacteria - 4733; Metazoa - 12156; Fungi - 7299; Plants - 9637; Viruses - 3; Other Eukaryotes - 1300 (source: NCBI BLink). & (reliability: 774.0) &  (original description: no original description)","protein_coding"
"PSME_00051294-RA","No alias","Pseudotsuga menziesii","(at3g29230 : 103.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 41738 Blast hits to 14344 proteins in 280 species: Archae - 0; Bacteria - 4; Metazoa - 166; Fungi - 161; Plants - 40664; Viruses - 0; Other Eukaryotes - 743 (source: NCBI BLink). & (reliability: 206.0) &  (original description: no original description)","protein_coding"
"PSME_00051301-RA","No alias","Pseudotsuga menziesii","(at3g04610 : 219.0) flowering locus KH domain (FLK); FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: positive regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT4G26000.1); Has 8156 Blast hits to 5360 proteins in 381 species: Archae - 0; Bacteria - 269; Metazoa - 3587; Fungi - 776; Plants - 1209; Viruses - 216; Other Eukaryotes - 2099 (source: NCBI BLink). & (reliability: 438.0) &  (original description: no original description)","protein_coding"
"PSME_00051352-RA","No alias","Pseudotsuga menziesii","(at5g23850 : 173.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF821) (TAIR:AT3G48980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 346.0) &  (original description: no original description)","protein_coding"
"PSME_00051409-RA","No alias","Pseudotsuga menziesii","(q07353|fl3h_pethy : 503.0) Naringenin,2-oxoglutarate 3-dioxygenase (EC 1.14.11.9) (Flavonone-3-hydroxylase) (F3H) (FHT) (Fragment) - Petunia hybrida (Petunia) & (at3g51240 : 488.0) Encodes flavanone 3-hydroxylase that is coordinately expressed with chalcone synthase and chalcone isomerases. Regulates flavonoid biosynthesis.; flavanone 3-hydroxylase (F3H); CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G10490.1). & (reliability: 976.0) &  (original description: no original description)","protein_coding"
"PSME_00051603-RA","No alias","Pseudotsuga menziesii",""(at4g31940 : 348.0) member of CYP82C; ""cytochrome P450, family 82, subfamily C, polypeptide 4"" (CYP82C4); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 82, subfamily C, polypeptide 2 (TAIR:AT4G31970.1); Has 33616 Blast hits to 33393 proteins in 1726 species: Archae - 49; Bacteria - 3806; Metazoa - 11816; Fungi - 7242; Plants - 9457; Viruses - 3; Other Eukaryotes - 1243 (source: NCBI BLink). & (p48419|c75a3_pethy : 335.0) Flavonoid 3',5'-hydroxylase 2 (EC 1.14.13.88) (F3'5'H) (Cytochrome P450 75A3) (CYPLXXVA3) - Petunia hybrida (Petunia) & (reliability: 680.0) &  (original description: no original description)"","protein_coding"
"PSME_00051876-RA","No alias","Pseudotsuga menziesii","(at5g21010 : 127.0) BTB-POZ and MATH domain 5 (BPM5); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 6 (TAIR:AT3G43700.1); Has 6893 Blast hits to 6668 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 4820; Fungi - 220; Plants - 1514; Viruses - 55; Other Eukaryotes - 284 (source: NCBI BLink). & (reliability: 252.0) &  (original description: no original description)","protein_coding"
"PSME_00051881-RA","No alias","Pseudotsuga menziesii","(at5g64730 : 117.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 234.0) &  (original description: no original description)","protein_coding"
"PSME_00052110-RA","No alias","Pseudotsuga menziesii","(at1g06240 : 90.5) Protein of unknown function DUF455; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF455 (InterPro:IPR007402); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF455 (TAIR:AT5G04520.1); Has 954 Blast hits to 954 proteins in 412 species: Archae - 0; Bacteria - 697; Metazoa - 13; Fungi - 46; Plants - 75; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). & (reliability: 181.0) &  (original description: no original description)","protein_coding"
"PSME_00052332-RA","No alias","Pseudotsuga menziesii","(at1g06430 : 359.0) encodes a FtsH protease that is localized to the chloroplast; FTSH protease 8 (FTSH8); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1); Has 41562 Blast hits to 39150 proteins in 3282 species: Archae - 1592; Bacteria - 17123; Metazoa - 4966; Fungi - 3846; Plants - 3320; Viruses - 34; Other Eukaryotes - 10681 (source: NCBI BLink). & (q39444|ftsh_capan : 264.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (Fragment) - Capsicum annuum (Bell pepper) & (reliability: 718.0) &  (original description: no original description)","protein_coding"
"PSME_00052382-RA","No alias","Pseudotsuga menziesii","(at3g03740 : 193.0) BTB-POZ and MATH domain 4 (BPM4); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 5789 Blast hits to 5682 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 3860; Fungi - 138; Plants - 1466; Viruses - 48; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 362.0) &  (original description: no original description)","protein_coding"
"PSME_00052405-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00052535-RA","No alias","Pseudotsuga menziesii","(at5g49780 : 103.0) Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: shoot, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G49760.1); Has 183125 Blast hits to 134769 proteins in 4858 species: Archae - 153; Bacteria - 18167; Metazoa - 52558; Fungi - 10368; Plants - 80336; Viruses - 459; Other Eukaryotes - 21084 (source: NCBI BLink). & (reliability: 191.8) &  (original description: no original description)","protein_coding"
"PSME_00053083-RA","No alias","Pseudotsuga menziesii","(at1g48320 : 128.0) Thioesterase superfamily protein; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683), Phenylacetic acid degradation-related protein (InterPro:IPR003736); BEST Arabidopsis thaliana protein match is: Thioesterase superfamily protein (TAIR:AT5G48950.1); Has 2845 Blast hits to 2845 proteins in 1040 species: Archae - 0; Bacteria - 2337; Metazoa - 4; Fungi - 0; Plants - 128; Viruses - 0; Other Eukaryotes - 376 (source: NCBI BLink). & (reliability: 256.0) &  (original description: no original description)","protein_coding"
"PSME_00053255-RA","No alias","Pseudotsuga menziesii",""(at5g63450 : 280.0) member of CYP94B; ""cytochrome P450, family 94, subfamily B, polypeptide 1"" (CYP94B1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 94, subfamily B, polypeptide 3 (TAIR:AT3G48520.1); Has 25811 Blast hits to 25731 proteins in 1391 species: Archae - 44; Bacteria - 2296; Metazoa - 9758; Fungi - 5338; Plants - 7375; Viruses - 3; Other Eukaryotes - 997 (source: NCBI BLink). & (reliability: 560.0) &  (original description: no original description)"","protein_coding"
"PSME_00053263-RA","No alias","Pseudotsuga menziesii","(p16867|h2b3_volca : 133.0) Histone H2B.3 (H2B-III) - Volvox carteri & (at2g28720 : 129.0) Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT3G45980.1); Has 3535 Blast hits to 3431 proteins in 349 species: Archae - 0; Bacteria - 57; Metazoa - 2253; Fungi - 226; Plants - 491; Viruses - 2; Other Eukaryotes - 506 (source: NCBI BLink). & (reliability: 254.0) &  (original description: no original description)","protein_coding"
"PSME_00053656-RA","No alias","Pseudotsuga menziesii","(at4g20140 : 320.0) Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase.  GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis.; GASSHO1 (GSO1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, embryo development, epidermis development; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT5G44700.1); Has 301150 Blast hits to 144127 proteins in 5007 species: Archae - 193; Bacteria - 28594; Metazoa - 96322; Fungi - 11667; Plants - 129816; Viruses - 411; Other Eukaryotes - 34147 (source: NCBI BLink). & (p93194|rpk1_iponi : 266.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 576.0) &  (original description: no original description)","protein_coding"
"PSME_00053782-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00053852-RA","No alias","Pseudotsuga menziesii","(p48489|pp1_orysa : 367.0) Serine/threonine-protein phosphatase PP1 (EC 3.1.3.16) - Oryza sativa (Rice) & (at2g39840 : 360.0) Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.; type one serine/threonine protein phosphatase 4 (TOPP4); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: type one serine/threonine protein phosphatase 2 (TAIR:AT5G59160.3); Has 7176 Blast hits to 6978 proteins in 618 species: Archae - 78; Bacteria - 533; Metazoa - 2415; Fungi - 1410; Plants - 987; Viruses - 16; Other Eukaryotes - 1737 (source: NCBI BLink). & (reliability: 720.0) &  (original description: no original description)","protein_coding"
"PSME_00053888-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00054054-RA","No alias","Pseudotsuga menziesii","(at5g17540 : 333.0) HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (TAIR:AT3G03480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o24645|hcbt1_diaca : 171.0) Anthranilate N-benzoyltransferase protein 1 (EC 2.3.1.144) (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 1) - Dianthus caryophyllus (Carnation) (Clove pink) & (reliability: 666.0) &  (original description: no original description)","protein_coding"
"PSME_00054185-RA","No alias","Pseudotsuga menziesii","(at5g01340 : 445.0) Mitochondrial substrate carrier family protein; FUNCTIONS IN: transporter activity, binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrial inner membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108), Adenine nucleotide translocator 1 (InterPro:IPR002113); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT2G37890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 890.0) &  (original description: no original description)","protein_coding"
"PSME_00054466-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00054552-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00054565-RA","No alias","Pseudotsuga menziesii","(at2g03880 : 473.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G24000.1); Has 41924 Blast hits to 14587 proteins in 276 species: Archae - 3; Bacteria - 26; Metazoa - 84; Fungi - 128; Plants - 40967; Viruses - 0; Other Eukaryotes - 716 (source: NCBI BLink). & (q76c99|rf1_orysa : 90.5) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 902.0) &  (original description: no original description)","protein_coding"
"PSME_00054606-RA","No alias","Pseudotsuga menziesii","(at2g26870 : 568.0) non-specific phospholipase C2 (NPC2); FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: triglyceride biosynthetic process, phospholipid biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoesterase (InterPro:IPR007312); BEST Arabidopsis thaliana protein match is: non-specific phospholipase C1 (TAIR:AT1G07230.1); Has 2169 Blast hits to 2123 proteins in 400 species: Archae - 32; Bacteria - 1806; Metazoa - 0; Fungi - 127; Plants - 155; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). & (reliability: 1136.0) &  (original description: no original description)","protein_coding"
"PSME_00054926-RA","No alias","Pseudotsuga menziesii","(at5g54060 : 132.0) UDP-glucose:flavonoid 3-o-glucosyltransferase (UF3GT); FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: N-terminal protein myristoylation, response to sucrose stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT5G54010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q43716|ufog_pethy : 130.0) Anthocyanidin 3-O-glucosyltransferase (EC 2.4.1.115) (Flavonol 3-O-glucosyltransferase) (UDP-glucose flavonoid 3-O-glucosyltransferase) (Anthocyanin rhamnosyl transferase) - Petunia hybrida (Petunia) & (reliability: 244.0) &  (original description: no original description)","protein_coding"
"PSME_00055060-RA","No alias","Pseudotsuga menziesii","(at5g11730 : 421.0) Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G25970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 842.0) &  (original description: no original description)","protein_coding"
"PSME_00055219-RA","No alias","Pseudotsuga menziesii","(at1g22360 : 389.0) UDP-glucosyl transferase 85A2 (UGT85A2); FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 85A3 (TAIR:AT1G22380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q43641|ufog_solme : 155.0) Anthocyanidin 3-O-glucosyltransferase (EC 2.4.1.115) (Flavonol 3-O-glucosyltransferase) (UDP-glucose flavonoid 3-O-glucosyltransferase) - Solanum melongena (Eggplant) (Aubergine) & (gnl|cdd|68872 : 140.0) no description available & (reliability: 770.0) &  (original description: no original description)","protein_coding"
"PSME_00055438-RA","No alias","Pseudotsuga menziesii"," (original description: no original description)","protein_coding"
"PSME_00055488-RA","No alias","Pseudotsuga menziesii","(at2g37710 : 526.0) Induced in response to Salicylic acid.; receptor lectin kinase (RLK); FUNCTIONS IN: kinase activity; INVOLVED IN: response to salicylic acid stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT3G53810.1); Has 113290 Blast hits to 111820 proteins in 4637 species: Archae - 92; Bacteria - 13273; Metazoa - 41290; Fungi - 9298; Plants - 33316; Viruses - 357; Other Eukaryotes - 15664 (source: NCBI BLink). & (q8lpb4|pskr_dauca : 191.0) Phytosulfokine receptor precursor (EC 2.7.11.1) (Phytosulfokine LRR receptor kinase) - Daucus carota (Carrot) & (reliability: 1042.0) &  (original description: no original description)","protein_coding"
"PSME_00055766-RA","No alias","Pseudotsuga menziesii","(q8lnz5|xthb_phaan : 137.0) Probable xyloglucan endotransglucosylase/hydrolase protein B precursor (EC 2.4.1.207) (VaXTH2) - Phaseolus angularis (Adzuki bean) (Vigna angularis) & (at5g13870 : 132.0) EXGT-A4, endoxyloglucan transferase,; xyloglucan endotransglucosylase/hydrolase 5 (XTH5); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 4 (TAIR:AT2G06850.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 264.0) &  (original description: no original description)","protein_coding"
"PSME_00055941-RA","No alias","Pseudotsuga menziesii","(at4g38540 : 125.0) FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: monooxygenase activity; INVOLVED IN: oxidation reduction; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Monooxygenase, FAD-binding (InterPro:IPR002938); BEST Arabidopsis thaliana protein match is: FAD/NAD(P)-binding oxidoreductase family protein (TAIR:AT5G05320.1); Has 5392 Blast hits to 5382 proteins in 1070 species: Archae - 48; Bacteria - 3093; Metazoa - 5; Fungi - 1172; Plants - 539; Viruses - 0; Other Eukaryotes - 535 (source: NCBI BLink). & (reliability: 250.0) &  (original description: no original description)","protein_coding"
"PSME_00056214-RA","No alias","Pseudotsuga menziesii","(at3g52500 : 210.0) Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT5G45120.1); Has 2297 Blast hits to 2281 proteins in 180 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 122; Plants - 1871; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink). & (reliability: 420.0) &  (original description: no original description)","protein_coding"
"PSME_00056320-RA","No alias","Pseudotsuga menziesii",""(at3g48290 : 172.0) putative cytochrome P450; ""cytochrome P450, family 71, subfamily A, polypeptide 24"" (CYP71A24); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 71, subfamily A, polypeptide 22 (TAIR:AT3G48310.1). & (p37118|c71a2_solme : 166.0) Cytochrome P450 71A2 (EC 1.14.-.-) (CYPLXXIA2) (P-450EG4) - Solanum melongena (Eggplant) (Aubergine) & (reliability: 320.0) &  (original description: no original description)"","protein_coding"
"PSME_00056558-RA","No alias","Pseudotsuga menziesii","(at1g12775 : 297.0) Pentatricopeptide repeat (PPR) superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G12300.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q76c99|rf1_orysa : 249.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 550.0) &  (original description: no original description)","protein_coding"
"PSME_00056828-RA","No alias","Pseudotsuga menziesii","(at1g48175 : 216.0) embryo defective 2191 (emb2191); FUNCTIONS IN: hydrolase activity, zinc ion binding, catalytic activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193); BEST Arabidopsis thaliana protein match is: tRNA arginine adenosine deaminase (TAIR:AT1G68720.1); Has 7475 Blast hits to 7473 proteins in 2425 species: Archae - 62; Bacteria - 5225; Metazoa - 126; Fungi - 224; Plants - 142; Viruses - 0; Other Eukaryotes - 1696 (source: NCBI BLink). & (reliability: 432.0) &  (original description: no original description)","protein_coding"
"PSME_00057103-RA","No alias","Pseudotsuga menziesii","(at3g46950 : 137.0) Mitochondrial transcription termination factor family protein; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); BEST Arabidopsis thaliana protein match is: Mitochondrial transcription termination factor family protein (TAIR:AT1G61960.1); Has 1049 Blast hits to 852 proteins in 58 species: Archae - 2; Bacteria - 13; Metazoa - 40; Fungi - 2; Plants - 981; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). & (reliability: 274.0) &  (original description: no original description)","protein_coding"
"PSME_00057202-RA","No alias","Pseudotsuga menziesii","(at1g71060 : 107.0) Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G77360.1); Has 34236 Blast hits to 11484 proteins in 290 species: Archae - 3; Bacteria - 45; Metazoa - 348; Fungi - 482; Plants - 32361; Viruses - 0; Other Eukaryotes - 997 (source: NCBI BLink). & (reliability: 214.0) &  (original description: no original description)","protein_coding"
"Seita.1G051300.1","No alias","Setaria italica ","citrate synthase *(CSY4/5) & EC_2.3 acyltransferase","protein_coding"
"Seita.1G137400.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.1G191400.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.1G227600.1","No alias","Setaria italica ","regulatory subunit of acetolactate synthase complex & regulatory subunit of acetolactate synthase complex","protein_coding"
"Seita.1G239500.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.1G344400.1","No alias","Setaria italica ","component *(APC4) of (APC/C)-dependent ubiquitination platform subcomplex","protein_coding"
"Seita.2G095100.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G173900.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G186700.1","No alias","Setaria italica ","CWF19-type post-transcriptionally regulatory factor","protein_coding"
"Seita.2G187100.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G261100.1","No alias","Setaria italica ","mannan synthesis accessory protein *(MSR)","protein_coding"
"Seita.2G278000.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G291200.1","No alias","Setaria italica ","component *(CAF1c/MSI) of CAF1 histone chaperone complex & component *(MSI3) of ISWI chromatin remodeling complex","protein_coding"
"Seita.2G394100.1","No alias","Setaria italica ","E3 ubiquitin ligase *(RBR-Helicase)","protein_coding"
"Seita.2G400300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G405600.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G426300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.3G051100.1","No alias","Setaria italica ","cyclopropylsterol isomerase","protein_coding"
"Seita.3G144600.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.3G218700.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.3G370100.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.3G392500.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.3G394000.1","No alias","Setaria italica ","ARF-type transcription factor","protein_coding"
"Seita.4G008500.1","No alias","Setaria italica ","RNA editing factor *(CRR22)","protein_coding"
"Seita.4G015000.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.4G048800.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.4G059100.1","No alias","Setaria italica ","component *(Metaxin) of outer mitochondrion membrane SAM insertion system","protein_coding"
"Seita.4G076900.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.4G141500.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.4G168900.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.4G218400.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G056900.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G069200.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G099200.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G117900.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G141100.1","No alias","Setaria italica ","aminoimidazole RN carboxylase *(PUR6)","protein_coding"
"Seita.5G276000.1","No alias","Setaria italica ","monoacylglycerol lipase","protein_coding"
"Seita.5G285600.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G344900.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G384300.1","No alias","Setaria italica ","phosphate transporter *(PHT4)","protein_coding"
"Seita.5G388800.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G454100.1","No alias","Setaria italica ","UMP synthase *(UMPS)","protein_coding"
"Seita.6G012800.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.6G051400.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.6G055300.1","No alias","Setaria italica ","EC_1.1 oxidoreductase acting on CH-OH group of donor","protein_coding"
"Seita.6G074500.1","No alias","Setaria italica ","medium-chain fatty acid hydroxylase *(DEX2) & EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen","protein_coding"
"Seita.6G101000.1","No alias","Setaria italica ","regulatory co-factor *(RRP47) of RRP6L exoribonuclease activity","protein_coding"
"Seita.6G113200.1","No alias","Setaria italica ","GMP synthetase *(GMPS) & EC_6.3 ligase forming carbon-nitrogen bond","protein_coding"
"Seita.6G129100.1","No alias","Setaria italica ","Z-type thioredoxin *(Trx-Z) & cofactor of plastid-encoded RNA polymerase *(PAP10/TrxZ)","protein_coding"
"Seita.6G250100.1","No alias","Setaria italica ","dihydroxy-acid dehydratase & dihydroxy-acid dehydratase & EC_4.2 carbon-oxygen lyase","protein_coding"
"Seita.7G137300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.7G267500.1","No alias","Setaria italica ","component *(eL18) of large ribosomal-subunit (LSU) proteome","protein_coding"
"Seita.8G161400.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.8G163100.1","No alias","Setaria italica ","RNA editing factor *(MEF11)","protein_coding"
"Seita.8G167800.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G068200.1","No alias","Setaria italica ","RNA editing factor *(DEK36)","protein_coding"
"Seita.9G076100.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G101600.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G118800.1","No alias","Setaria italica ","RNA editing factor *(OZ)","protein_coding"
"Seita.9G173600.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G239500.1","No alias","Setaria italica ","RNA editing factor *(MEF37)","protein_coding"
"Seita.9G388600.1","No alias","Setaria italica ","plastidial ribonucleoprotein *(CP29)","protein_coding"
"Seita.9G413600.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G444800.1","No alias","Setaria italica ","component *(TOP6A) of somatic DNA topoisomerase VI complex","protein_coding"
"Seita.9G476300.1","No alias","Setaria italica ","component *(APC6) of (APC/C)-dependent ubiquitination arc lamp subcomplex","protein_coding"
"Seita.9G552600.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Sobic.001G007800.1","No alias","Sorghum bicolor ","SSU processome assembly factor *(SOF1)","protein_coding"
"Sobic.001G017700.1","No alias","Sorghum bicolor ","diphthamide biosynthesis protein *(DPH2)","protein_coding"
"Sobic.001G052400.2","No alias","Sorghum bicolor ","pre-60S ribosomal subunit assembly factor *(NOP4)","protein_coding"
"Sobic.001G099800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G115500.1","No alias","Sorghum bicolor ","nucleocytoplasmic export karyopherin *(XPO2)","protein_coding"
"Sobic.001G132900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G206500.1","No alias","Sorghum bicolor ","component *(NOC2) of ribosomal-subunit proteome nuclear export complexes","protein_coding"
"Sobic.001G214900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G259000.4","No alias","Sorghum bicolor ","component *(eIF2B-beta) of eIF2B eIF2-GDP recycling complex","protein_coding"
"Sobic.001G291800.1","No alias","Sorghum bicolor ","component *(eIF3b) of eIF3 mRNA-to-PIC binding complex","protein_coding"
"Sobic.001G335500.1","No alias","Sorghum bicolor ","mRNA endoribonuclease *(G3BP)","protein_coding"
"Sobic.001G363000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G376400.1","No alias","Sorghum bicolor ","pre-60S ribosomal subunit assembly factor *(SSF1)","protein_coding"
"Sobic.001G376900.1","No alias","Sorghum bicolor ","SSU processome assembly factor *(UTP14)","protein_coding"
"Sobic.001G382500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G429600.1","No alias","Sorghum bicolor ","nucleocytoplasmic import karyopherin *(IMB4)","protein_coding"
"Sobic.001G453400.2","No alias","Sorghum bicolor ","component *(NOC1) of ribosomal-subunit proteome nuclear export complex","protein_coding"
"Sobic.001G530800.1","No alias","Sorghum bicolor ","subunit delta *(CCT4) of CCT chaperonin folding complex","protein_coding"
"Sobic.001G532400.1","No alias","Sorghum bicolor ","insertase component *(Oxa1) of inner mitochondrion membrane presequence-dependent insertion system & membrane insertase (Oxa1) of cytochrome c oxidase assembly","protein_coding"
"Sobic.002G005700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G052700.1","No alias","Sorghum bicolor ","peptidyl-prolyl cis-trans isomerase *(CYP63/CYP95) & EC_5.2 cis-trans-isomerase","protein_coding"
"Sobic.002G069500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G112100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G155000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G174900.1","No alias","Sorghum bicolor ","cysteine desulfurase component *(NFS1) of mitochondrial ISC system assembly phase & EC_2.8 transferase transferring sulfur-containing group","protein_coding"
"Sobic.002G234300.1","No alias","Sorghum bicolor ","tRNA cytidine-methyltransferase *(TRM4) & EC_2.1 transferase transferring one-carbon group","protein_coding"
"Sobic.002G238000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G295900.1","No alias","Sorghum bicolor ","component *(uS15m) of small mitoribosomal-subunit proteome","protein_coding"
"Sobic.002G312800.1","No alias","Sorghum bicolor ","pre-60S ribosomal subunit assembly factor *(NSA1)","protein_coding"
"Sobic.002G325400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G364900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G365900.1","No alias","Sorghum bicolor ","component *(WDR12) of ribosome PES-BOP1-WDR12 (PeBoW) complex","protein_coding"
"Sobic.002G371100.1","No alias","Sorghum bicolor ","component *(uS3) of small ribosomal-subunit (SSU) proteome","protein_coding"
"Sobic.002G399200.1","No alias","Sorghum bicolor ","rRNA biogenesis RNA helicase *(ROK1)","protein_coding"
"Sobic.002G402500.1","No alias","Sorghum bicolor ","component *(uS9m) of small mitoribosomal-subunit proteome","protein_coding"
"Sobic.002G408900.1","No alias","Sorghum bicolor ","component *(mS83) of small mitoribosomal-subunit proteome","protein_coding"
"Sobic.002G412700.1","No alias","Sorghum bicolor ","histone methylase *(PRMT4)","protein_coding"
"Sobic.003G008600.1","No alias","Sorghum bicolor ","component *(eIF3l) of eIF3 mRNA-to-PIC binding complex","protein_coding"
"Sobic.003G028100.1","No alias","Sorghum bicolor ","nucleoporin of nuclear pore complex *(NUP35)","protein_coding"
"Sobic.003G059400.1","No alias","Sorghum bicolor ","SSU processome assembly factor *(UTP10)","protein_coding"
"Sobic.003G113400.1","No alias","Sorghum bicolor ","component *(uL3m) of large mitoribosomal-subunit proteome","protein_coding"
"Sobic.003G156500.1","No alias","Sorghum bicolor ","component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex","protein_coding"
"Sobic.003G291500.1","No alias","Sorghum bicolor ","mRNA-translocation factor *(eEF2))","protein_coding"
"Sobic.003G326900.1","No alias","Sorghum bicolor ","regulatory protein *(GCD1) involved in gametogenesis","protein_coding"
"Sobic.003G330000.1","No alias","Sorghum bicolor ","SSU processome assembly factor *(UTP11)","protein_coding"
"Sobic.003G407600.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.003G408300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.003G424800.1","No alias","Sorghum bicolor ","pre-60S ribosomal subunit assembly factor *(NOP15)","protein_coding"
"Sobic.004G011000.1","No alias","Sorghum bicolor ","pre-rRNA processing endonuclease involved in ITS1 rRNA removal *(NOB1)","protein_coding"
"Sobic.004G033300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.004G173100.1","No alias","Sorghum bicolor ","component *(RRP45) of exosome EXO9 core complex","protein_coding"
"Sobic.004G198500.1","No alias","Sorghum bicolor ","assembly factor involved in ITS1 rRNA removal *(BRIX1)","protein_coding"
"Sobic.004G244000.1","No alias","Sorghum bicolor ","subunit alpha of E1 subcomplex of pyruvate dehydrogenase complex & EC_1.2 oxidoreductase acting on aldehyde or oxo group of donor","protein_coding"
"Sobic.004G256000.1","No alias","Sorghum bicolor ","rRNA methyltransferase *(NOP2)","protein_coding"
"Sobic.004G279800.1","No alias","Sorghum bicolor ","nucleoporin of nuclear pore complex *(NDC1)","protein_coding"
"Sobic.004G305100.1","No alias","Sorghum bicolor ","mTERF-type transcription factor","protein_coding"
"Sobic.004G320500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.004G340400.1","No alias","Sorghum bicolor ","component *(eIF2B-epsilon) of eIF2B eIF2-GDP recycling complex","protein_coding"
"Sobic.005G100900.1","No alias","Sorghum bicolor ","RNA editing factor *(MORF)","protein_coding"
"Sobic.005G187400.2","No alias","Sorghum bicolor ","large subunit of TFIf basal transcription factor complex","protein_coding"
"Sobic.006G032100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.006G084000.1","No alias","Sorghum bicolor ","threonylcarbamoyladenosine methylthiotransferase","protein_coding"
"Sobic.006G143200.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.006G153200.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.006G213400.2","No alias","Sorghum bicolor ","bifunctional aminoimidazole-carboximide RN transformylase and IMP cyclohydrolase *(PUR9/10)","protein_coding"
"Sobic.006G221600.1","No alias","Sorghum bicolor ","transposon-derived factor HDP1","protein_coding"
"Sobic.006G226300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.006G235700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.006G278500.2","No alias","Sorghum bicolor ","GMP synthetase *(GMPS) & EC_6.3 ligase forming carbon-nitrogen bond","protein_coding"
"Sobic.007G039400.1","No alias","Sorghum bicolor ","tyrosine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond","protein_coding"
"Sobic.007G220300.1","No alias","Sorghum bicolor ","component *(ELP2) of ELONGATOR transcription elongation complex","protein_coding"
"Sobic.009G040500.1","No alias","Sorghum bicolor ","pre-60S ribosomal subunit assembly factor *(SMO4)","protein_coding"
"Sobic.009G045900.2","No alias","Sorghum bicolor ","EC_6.1 ligase forming carbon-oxygen bond & histidine-tRNA ligase","protein_coding"
"Sobic.009G046700.1","No alias","Sorghum bicolor ","nucleoporin of nuclear pore complex *(NUP50)","protein_coding"
"Sobic.009G101200.1","No alias","Sorghum bicolor ","auxiliary component *(NAA25) of NatB N-terminal acetylase complex","protein_coding"
"Sobic.009G190300.1","No alias","Sorghum bicolor ","component *(ARPF2) of ARPF2-ARRS1 complex","protein_coding"
"Sobic.009G204400.1","No alias","Sorghum bicolor ","SSU processome assembly factor *(MPP10)","protein_coding"
"Sobic.009G211700.1","No alias","Sorghum bicolor ","HD2-type histone deacetylase *(HD2/HDT)","protein_coding"
"Sobic.009G217200.1","No alias","Sorghum bicolor ","component *(NRPA1) of RNA polymerase I complex","protein_coding"
"Sobic.009G219400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.009G234700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.009G235200.1","No alias","Sorghum bicolor ","MRM2-type rRNA methyltransferase","protein_coding"
"Sobic.009G249800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.009G257600.1","No alias","Sorghum bicolor ","helicase UAP56","protein_coding"
"Sobic.010G003400.1","No alias","Sorghum bicolor ","RNA helicase component *(MTR4) of TRAMP nucleolar regulation complex","protein_coding"
"Sobic.010G054300.2","No alias","Sorghum bicolor ","component *(Metaxin) of outer mitochondrion membrane SAM insertion system","protein_coding"
"Sobic.010G073200.1","No alias","Sorghum bicolor ","regulatory GTPase (NOG1) of LSU processome","protein_coding"
"Sobic.010G103200.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.010G188000.1","No alias","Sorghum bicolor ","component *(CLO/SNU114/MAC11)  of MAC spliceosome-associated complex","protein_coding"
"Solyc01g044360","No alias","Solanum lycopersicum","Importin 5 (AHRD V3.3 *** A0A0U3C0Z7_HEVBR)","protein_coding"
"Solyc01g098000","No alias","Solanum lycopersicum","Elongation factor 1-beta (AHRD V3.3 *** D7KES3_ARALL)","protein_coding"
"Solyc01g098100","No alias","Solanum lycopersicum","60S ribosome subunit biogenesis protein NIP7 homolog (AHRD V3.3 *** K4B0J7_SOLLC)","protein_coding"
"Solyc01g102570","No alias","Solanum lycopersicum","Eukaryotic translation initiation factor 3 subunit C (AHRD V3.3 *** M1BJV6_SOLTU)","protein_coding"
"Solyc01g103220","No alias","Solanum lycopersicum","Cytochrome c (AHRD V3.3 *** CYC_SOLTU)","protein_coding"
"Solyc01g104180","No alias","Solanum lycopersicum","LOW QUALITY:GNS1/SUR4 membrane protein family (AHRD V3.3 *** AT3G06470.1)","protein_coding"
"Solyc01g108600","No alias","Solanum lycopersicum","presequence protease 2 (AHRD V3.3 *** AT1G49630.3)","protein_coding"
"Solyc02g078120","No alias","Solanum lycopersicum","Eukaryotic translation initiation factor 3 subunit D (AHRD V3.3 *** K4B937_SOLLC)","protein_coding"
"Solyc02g089280","No alias","Solanum lycopersicum","alpha-L RNA-binding motif/ribosomal protein S4 family protein","protein_coding"
"Solyc02g094490","No alias","Solanum lycopersicum","ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (AHRD V3.3 --* AT1G68710.3)","protein_coding"
"Solyc03g079930","No alias","Solanum lycopersicum","Mitochondrial glycoprotein (AHRD V3.3 *** A0A103YDB4_CYNCS)","protein_coding"
"Solyc03g114370","No alias","Solanum lycopersicum","RNA helicase DEAD13","protein_coding"
"Solyc03g120780","No alias","Solanum lycopersicum","Ribosomal protein L37 (AHRD V3.3 *** K4BMM7_SOLLC)","protein_coding"
"Solyc05g010480","No alias","Solanum lycopersicum","No description available","protein_coding"
"Solyc05g010660","No alias","Solanum lycopersicum","DNA-directed RNA polymerase (AHRD V3.3 *** K4BXN8_SOLLC)","protein_coding"
"Solyc05g055880","No alias","Solanum lycopersicum","NOP56-like pre RNA processing ribonucleoprotein (AHRD V3.3 *** AT5G27120.1)","protein_coding"
"Solyc06g005860","No alias","Solanum lycopersicum","Exosome complex component (AHRD V3.3 *** W9QJQ0_9ROSA)","protein_coding"
"Solyc06g011280","No alias","Solanum lycopersicum","Elongation factor 1-gamma 1 (AHRD V3.3 *** EF1G1_ORYSJ)","protein_coding"
"Solyc06g035690","No alias","Solanum lycopersicum","Post-GPI attachment-like factor-protein (AHRD V3.3 *** A0A072UAB4_MEDTR)","protein_coding"
"Solyc07g042380","No alias","Solanum lycopersicum","ARM repeat superfamily protein isoform 2 (AHRD V3.3 *** A0A061GL04_THECC)","protein_coding"
"Solyc07g053730","No alias","Solanum lycopersicum","Nucleolar GTP-binding protein 1 (AHRD V3.3 *** K4CFR8_SOLLC)","protein_coding"
"Solyc07g056550","No alias","Solanum lycopersicum","bystin-like protein (AHRD V3.3 *** AT1G31660.1)","protein_coding"
"Solyc08g006040","No alias","Solanum lycopersicum","40S ribosomal protein S6 (AHRD V3.3 *** K4CI93_SOLLC)","protein_coding"
"Solyc08g029190","No alias","Solanum lycopersicum","Octicosapeptide/Phox/Bem1p domain-containing protein / tetratricopeptide repeat-containing protein (AHRD V3.3 *** A0A061GVW9_THECC)","protein_coding"
"Solyc08g067160","No alias","Solanum lycopersicum","Acyl-protein thioesterase 2 (AHRD V3.3 *** A0A061GQK2_THECC)","protein_coding"
"Solyc08g075720","No alias","Solanum lycopersicum","30S ribosomal protein S11 (AHRD V3.3 *-* A0A0B2QWJ9_GLYSO)","protein_coding"
"Solyc08g081150","No alias","Solanum lycopersicum","GMP synthase (AHRD V3.3 *** W8TFM6_TOBAC)","protein_coding"
"Solyc08g083380","No alias","Solanum lycopersicum","Mitochondrial import inner membrane translocase subunit Tim13 (AHRD V3.3 *** A0A0B0NRT8_GOSAR)","protein_coding"
"Solyc09g011360","No alias","Solanum lycopersicum","Mitochondrial substrate carrier family protein (AHRD V3.3 *** AT3G53940.1)","protein_coding"
"Solyc09g090610","No alias","Solanum lycopersicum","50S ribosomal protein L14 (AHRD V3.3 *** A0A0K9PMD0_ZOSMR)","protein_coding"
"Solyc10g084610","No alias","Solanum lycopersicum","60S ribosomal protein L23a (AHRD V3.3 *** RL23A_DAUCA)","protein_coding"
"Solyc11g020810","No alias","Solanum lycopersicum","FtsJ-like methyltransferase family protein (AHRD V3.3 *** AT4G25730.1)","protein_coding"
"Solyc11g040300","No alias","Solanum lycopersicum","transmembrane protein (AHRD V3.3 *-* AT4G10080.1)","protein_coding"
"Solyc11g068980","No alias","Solanum lycopersicum","Mitochondrial import inner membrane translocase subunit TIM22 (AHRD V3.3 *** A0A0B2PVQ5_GLYSO)","protein_coding"
"Solyc11g069700","No alias","Solanum lycopersicum","Elongation factor 1-alpha (AHRD V3.3 *** EF1A_SOLLC)","protein_coding"
"Solyc12g010520","No alias","Solanum lycopersicum","Eukaryotic peptide chain release factor subunit 1-1 (AHRD V3.3 *** B6U1I9_MAIZE)","protein_coding"
"Solyc12g040510","No alias","Solanum lycopersicum","Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** AT1G18080.1)","protein_coding"
"Solyc12g096150","No alias","Solanum lycopersicum","60S ribosomal protein L13 (AHRD V3.3 *** K4DH88_SOLLC)","protein_coding"
"Solyc12g099890","No alias","Solanum lycopersicum","Protein SDA1 like (AHRD V3.3 *** A0A0B2SJ94_GLYSO)","protein_coding"
"Sopen08g029450","No alias","Solanum pennellii","GMP synthase C terminal domain","protein_coding"