"sequence_id","alias","species","description","type"
"100351","No alias","Selaginella moellendorffii ","hydroxysteroid dehydrogenase 1","protein_coding"
"100748","No alias","Selaginella moellendorffii ","yeast YAK1-related gene 1","protein_coding"
"109372","No alias","Selaginella moellendorffii ","Zinc finger (C3HC4-type RING finger) family protein","protein_coding"
"109892","No alias","Selaginella moellendorffii ","NAD(P)-linked oxidoreductase superfamily protein","protein_coding"
"126723","No alias","Selaginella moellendorffii ","beta-hydroxylase 1","protein_coding"
"168321","No alias","Selaginella moellendorffii ","ARM repeat superfamily protein","protein_coding"
"230318","No alias","Selaginella moellendorffii ","O-Glycosyl hydrolases family 17 protein","protein_coding"
"233334","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"25673","No alias","Selaginella moellendorffii ","NAC domain containing protein 94","protein_coding"
"36615","No alias","Selaginella moellendorffii ","SGNH hydrolase-type esterase superfamily protein","protein_coding"
"405061","No alias","Selaginella moellendorffii ","Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein","protein_coding"
"405848","No alias","Selaginella moellendorffii ","hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase","protein_coding"
"409913","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"410698","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"417764","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"419485","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"421235","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"430930","No alias","Selaginella moellendorffii ","DNA/RNA helicase protein","protein_coding"
"431040","No alias","Selaginella moellendorffii ","Leucine-rich repeat receptor-like protein kinase family protein","protein_coding"
"432203","No alias","Selaginella moellendorffii ","Galactose oxidase/kelch repeat superfamily protein","protein_coding"
"59805","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"66149","No alias","Selaginella moellendorffii ","DNA-binding HORMA family protein","protein_coding"
"66328","No alias","Selaginella moellendorffii ","Galactosyltransferase family protein","protein_coding"
"7420","No alias","Selaginella moellendorffii ","protein phosphatase 5.2","protein_coding"
"82382","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"89107","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"98973","No alias","Selaginella moellendorffii ","RING/U-box superfamily protein","protein_coding"
"Cre01.g002900","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre01.g004250","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre01.g004651","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre01.g005400","No alias","Chlamydomonas reinhardtii","NAD(P)-binding Rossmann-fold superfamily protein","protein_coding"
"Cre01.g005450","No alias","Chlamydomonas reinhardtii","Phosphatidylinositol-4-phosphate 5-kinase family protein","protein_coding"
"Cre01.g034550","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre01.g038750","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre01.g039200","No alias","Chlamydomonas reinhardtii","RAB GTPase homolog G3A","protein_coding"
"Cre01.g045350","No alias","Chlamydomonas reinhardtii","RNI-like superfamily protein","protein_coding"
"Cre01.g051250","No alias","Chlamydomonas reinhardtii","calmodulin 1","protein_coding"
"Cre02.g078600","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre02.g092850","No alias","Chlamydomonas reinhardtii","Outer arm dynein light chain 1 protein","protein_coding"
"Cre02.g095072","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre02.g095110","No alias","Chlamydomonas reinhardtii","inhibitor-3","protein_coding"
"Cre02.g110950","No alias","Chlamydomonas reinhardtii","Transducin family protein / WD-40 repeat family protein","protein_coding"
"Cre02.g113400","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre02.g142126","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre02.g144350","No alias","Chlamydomonas reinhardtii","RAB GTPase homolog B1A","protein_coding"
"Cre02.g147050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre03.g160700","No alias","Chlamydomonas reinhardtii","GATA transcription factor 10","protein_coding"
"Cre03.g178350","No alias","Chlamydomonas reinhardtii","calmodulin 4","protein_coding"
"Cre03.g178500","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre03.g179840","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre03.g186300","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre03.g187200","No alias","Chlamydomonas reinhardtii","Dynein light chain type 1 family protein","protein_coding"
"Cre03.g194750","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre03.g197513","No alias","Chlamydomonas reinhardtii","Low temperature and salt responsive protein family","protein_coding"
"Cre03.g200700","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre03.g204150","No alias","Chlamydomonas reinhardtii","WD-40 repeat family protein","protein_coding"
"Cre03.g205361","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre05.g241637","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre05.g242500","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre05.g242550","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre06.g251200","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre06.g260150","No alias","Chlamydomonas reinhardtii","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding"
"Cre06.g267550","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre06.g283100","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre06.g308600","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre07.g312950","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre07.g325650","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre07.g330200","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre07.g342200","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre07.g343800","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre07.g351650","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre08.g385100","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre09.g389282","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre09.g390615","No alias","Chlamydomonas reinhardtii","Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3","protein_coding"
"Cre09.g390949","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre09.g394251","No alias","Chlamydomonas reinhardtii","ARM repeat superfamily protein","protein_coding"
"Cre09.g403200","No alias","Chlamydomonas reinhardtii","Fatty acid/sphingolipid desaturase","protein_coding"
"Cre10.g418150","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre10.g424250","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre10.g428664","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre10.g442041","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre10.g443750","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre10.g447050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre10.g457850","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre10.g465250","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre10.g466650","No alias","Chlamydomonas reinhardtii","calcium-dependent protein kinase 20","protein_coding"
"Cre11.g467561","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre11.g467582","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre11.g467721","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre11.g468850","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g485000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g489750","No alias","Chlamydomonas reinhardtii","Transducin family protein / WD-40 repeat family protein","protein_coding"
"Cre12.g490700","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g498200","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g505250","No alias","Chlamydomonas reinhardtii","calcium-dependent protein kinase 24","protein_coding"
"Cre12.g506000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g509800","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g511050","No alias","Chlamydomonas reinhardtii","DNAJ heat shock family protein","protein_coding"
"Cre12.g511750","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g527750","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g529150","No alias","Chlamydomonas reinhardtii","HOPW1-1-interacting 2","protein_coding"
"Cre12.g536100","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g543500","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g544000","No alias","Chlamydomonas reinhardtii","NAD(P)-linked oxidoreductase superfamily protein","protein_coding"
"Cre12.g545850","No alias","Chlamydomonas reinhardtii","mitochondrial HSO70 2","protein_coding"
"Cre12.g546400","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre12.g558700","No alias","Chlamydomonas reinhardtii","Nucleoside diphosphate kinase family protein","protein_coding"
"Cre13.g565950","No alias","Chlamydomonas reinhardtii","zinc finger (C3HC4-type RING finger) family protein","protein_coding"
"Cre13.g570200","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre13.g572550","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre13.g573500","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre14.g617250","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre14.g617500","No alias","Chlamydomonas reinhardtii","armadillo repeat kinesin 2","protein_coding"
"Cre14.g617550","No alias","Chlamydomonas reinhardtii","calmodulin 5","protein_coding"
"Cre16.g654300","No alias","Chlamydomonas reinhardtii","Nucleoside diphosphate kinase family protein","protein_coding"
"Cre16.g659667","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre16.g663000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre16.g665850","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre16.g678350","No alias","Chlamydomonas reinhardtii","calmodulin-like domain protein kinase 9","protein_coding"
"Cre16.g685000","No alias","Chlamydomonas reinhardtii","plastid transcriptionally active 17","protein_coding"
"Cre16.g688650","No alias","Chlamydomonas reinhardtii","phosphatidyl inositol monophosphate 5 kinase","protein_coding"
"Cre16.g691103","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"Cre16.g695700","No alias","Chlamydomonas reinhardtii","PLAC8 family protein","protein_coding"
"Cre17.g718750","No alias","Chlamydomonas reinhardtii","Calcium-binding EF hand family protein","protein_coding"
"Cre17.g729850","No alias","Chlamydomonas reinhardtii","Histone H3 K4-specific methyltransferase SET7/9 family protein","protein_coding"
"Cre17.g732150","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding"
"evm.model.tig00000025.3","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000025.30","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000042.34","No alias","Cyanophora paradoxa","(at1g55350 : 180.0) Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway.; DEFECTIVE KERNEL 1 (DEK1); FUNCTIONS IN: cysteine-type endopeptidase activity, calcium-dependent cysteine-type endopeptidase activity; INVOLVED IN: cell fate specification, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C2, calpain, domain III (InterPro:IPR022683), Peptidase C2, calpain, large subunit, domain III (InterPro:IPR022682), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Peptidase C2, calpain, catalytic domain (InterPro:IPR001300), Peptidase C2, calpain family (InterPro:IPR022684). & (reliability: 360.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000076.39","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000093.147","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000093.233","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000114.31","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000142.8","No alias","Cyanophora paradoxa"," (original description: no original description)","protein_coding"
"evm.model.tig00000144.42","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000145.4","No alias","Cyanophora paradoxa","(at3g19050 : 249.0) PHRAGMOPLAST ORIENTING KINESIN 2 is one of the two Arabidopsis homologs isolated in yeast two-hybrid screen for interaction partners of maize gene TANGLED1 (TAN1). Based on sequence homology in their motor domains, POK1 and POK2 belong to the kinesin-12 class which also includes the well-characterized group of phragmoplast-associated kinesins AtPAKRPs. Both kinesins are composed of an N-terminal motor domain throughout the entire C terminus and putative cargo binding tail domains. The expression domains for POK2 constructs were broader than those for POK1; both are expressed in tissues enriched for dividing cells. The phenotype of pok1/pok2 double mutants strongly resembles that of maize tan1 mutants, characterized by misoriented mitotic cytoskeletal arrays and misplaced cell walls.; phragmoplast orienting kinesin 2 (POK2); FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: cytokinesis; EXPRESSED IN: root vascular system, primary root tip, lateral root primordium; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast orienting kinesin 1 (TAIR:AT3G17360.1); Has 204267 Blast hits to 80386 proteins in 3219 species: Archae - 3327; Bacteria - 35963; Metazoa - 90351; Fungi - 17822; Plants - 12667; Viruses - 746; Other Eukaryotes - 43391 (source: NCBI BLink). & (p46869|fla10_chlre : 228.0) Kinesin-like protein FLA10 (Protein KHP1) - Chlamydomonas reinhardtii & (reliability: 498.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000227.45","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000237.16","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000254.127","No alias","Cyanophora paradoxa","(at5g11100 : 99.0) SYTD; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G05500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 181.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000404.34","No alias","Cyanophora paradoxa","(q9zrj4|tba_chlvu : 793.0) Tubulin alpha chain - Chlorella vulgaris (Green alga) & (at1g50010 : 780.0) Encodes alpha-2,4 tubulin.  TUA2 and TUA4 encode identical proteins.; tubulin alpha-2 chain (TUA2); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, response to salt stress; LOCATED IN: tubulin complex, cytosol, cell wall, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alpha tubulin (InterPro:IPR002452), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin alpha-4 chain (TAIR:AT1G04820.1); Has 22626 Blast hits to 22529 proteins in 4679 species: Archae - 4; Bacteria - 25; Metazoa - 4391; Fungi - 13400; Plants - 1532; Viruses - 0; Other Eukaryotes - 3274 (source: NCBI BLink). & (reliability: 1560.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000630.17","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000691.30","No alias","Cyanophora paradoxa","(at3g07720 : 97.4) Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: nitrile specifier protein 5 (TAIR:AT5G48180.1); Has 10920 Blast hits to 5857 proteins in 349 species: Archae - 8; Bacteria - 366; Metazoa - 5368; Fungi - 1057; Plants - 2178; Viruses - 16; Other Eukaryotes - 1927 (source: NCBI BLink). & (reliability: 194.8) &  (original description: no original description)","protein_coding"
"evm.model.tig00000802.20","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000802.48","No alias","Cyanophora paradoxa"," (original description: no original description)","protein_coding"
"evm.model.tig00000944.51","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001003.30","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001017.4","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001067.14","No alias","Cyanophora paradoxa","(p04690|tbb_chlre : 810.0) Tubulin beta-1/beta-2 chain - Chlamydomonas reinhardtii & (at5g62700 : 783.0) encodes tubulin beta-2/beta-3 chain; tubulin beta chain 3 (TUB3); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: response to cold; LOCATED IN: tubulin complex, cell wall; EXPRESSED IN: cultured cell, seed; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 2 (TAIR:AT5G62690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1566.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001067.18","No alias","Cyanophora paradoxa","(at5g35840 : 148.0) Encodes the apoprotein of phytochrome;one of a family of photoreceptors that modulate plant  growth and development.; phytochrome C (PHYC); FUNCTIONS IN: protein histidine kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome A (TAIR:AT1G09570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p42496|phy_adica : 141.0) Phytochrome 1 - Adiantum capillus-veneris (Maidenhair fern) & (reliability: 296.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001067.6","No alias","Cyanophora paradoxa","(p04690|tbb_chlre : 752.0) Tubulin beta-1/beta-2 chain - Chlamydomonas reinhardtii & (at5g62700 : 726.0) encodes tubulin beta-2/beta-3 chain; tubulin beta chain 3 (TUB3); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: response to cold; LOCATED IN: tubulin complex, cell wall; EXPRESSED IN: cultured cell, seed; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 2 (TAIR:AT5G62690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1452.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001073.11","No alias","Cyanophora paradoxa","(at3g27325 : 118.0) hydrolases, acting on ester bonds; FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: intracellular protein transport, GPI anchor metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: PGAP1-like (InterPro:IPR012908). & (reliability: 236.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001187.16","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001214.17","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001299.1","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001339.8","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001366.21","No alias","Cyanophora paradoxa","(at3g57410 : 107.0) Encodes a protein with high homology to animal villin. VLN3 is a Ca2+-regulated villin involved in actin filament bundling.; villin 3 (VLN3); FUNCTIONS IN: actin binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gelsolin (InterPro:IPR007122), Villin headpiece (InterPro:IPR003128), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: villin 2 (TAIR:AT2G41740.1); Has 7542 Blast hits to 2948 proteins in 413 species: Archae - 0; Bacteria - 496; Metazoa - 2427; Fungi - 350; Plants - 307; Viruses - 25; Other Eukaryotes - 3937 (source: NCBI BLink). & (reliability: 214.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001371.9","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001497.1","No alias","Cyanophora paradoxa","(at5g47120 : 134.0) Encodes BI-1, a homolog of mammalian Bax inhibitor 1.  Functions as an attenuator of biotic and abiotic types of cell death.  Bax-induced cell death can be downregulated by ectopically expressing AtBI in planta.; BAX inhibitor 1 (BI1); CONTAINS InterPro DOMAIN/s: Inhibitor of apoptosis-promoting Bax1 related (InterPro:IPR006214), Bax inhibitor 1, conserved site (InterPro:IPR006213); BEST Arabidopsis thaliana protein match is: Bax inhibitor-1 family protein (TAIR:AT4G17580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q9mbd8|bi1_orysa : 107.0) Bax inhibitor 1 (BI-1) (OsBI-1) - Oryza sativa (Rice) & (reliability: 268.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001537.11","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001542.16","No alias","Cyanophora paradoxa","(at3g15380 : 208.0) Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); Has 948 Blast hits to 937 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 503; Fungi - 120; Plants - 118; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink). & (reliability: 416.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001574.3","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020554.111","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020556.51","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020560.29","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020603.37","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020614.96","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020723.17","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020801.33","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020812.7","No alias","Cyanophora paradoxa","(at4g19110 : 432.0) Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G45430.2); Has 112836 Blast hits to 111739 proteins in 3697 species: Archae - 107; Bacteria - 12214; Metazoa - 43480; Fungi - 11684; Plants - 25102; Viruses - 509; Other Eukaryotes - 19740 (source: NCBI BLink). & (p23111|cdc2_maize : 237.0) Cell division control protein 2 homolog (EC 2.7.11.22) (EC 2.7.11.23) (p34cdc2) - Zea mays (Maize) & (reliability: 864.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020828.2","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020902.22","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020902.9","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020903.31","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020904.92","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020912.20","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020938.14","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020943.51","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020943.89","No alias","Cyanophora paradoxa"," (original description: no original description)","protein_coding"
"evm.model.tig00020960.44","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020999.7","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021017.19","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021038.82","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021038.83","No alias","Cyanophora paradoxa",""(at5g12840 : 105.0) Encodes a subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences. One of three members of this class (HAP2A, HAP2B, HAP2C), it is expressed in vegetative and reproductive tissues.; ""nuclear factor Y, subunit A1"" (NF-YA1); CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A9 (TAIR:AT3G20910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 210.0) &  (original description: no original description)"","protein_coding"
"evm.model.tig00021094.28","No alias","Cyanophora paradoxa","(at3g55270 : 164.0) MAP kinase phosphatase (MKP1); mitogen-activated protein kinase phosphatase 1 (MKP1); CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: MAPK phosphatase 2 (TAIR:AT3G06110.3); Has 4115 Blast hits to 4050 proteins in 297 species: Archae - 2; Bacteria - 48; Metazoa - 2335; Fungi - 439; Plants - 312; Viruses - 98; Other Eukaryotes - 881 (source: NCBI BLink). & (reliability: 328.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021108.32","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021168.15","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021244.23","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021293.30","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021312.53","No alias","Cyanophora paradoxa","(at5g22770 : 587.0) alpha-adaptin (alpha-ADR); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: male gametophyte, pollen tube, leaf; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Adaptor protein complex AP-2, alpha subunit (InterPro:IPR017104), Armadillo-like helical (InterPro:IPR011989), Clathrin adaptor, alpha-adaptin, appendage, Ig-like subdomain (InterPro:IPR013038), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, alpha-adaptin, appendage, C-terminal subdomain (InterPro:IPR003164), Armadillo-type fold (InterPro:IPR016024), Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain (InterPro:IPR015873), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: Adaptor protein complex AP-2, alpha subunit (TAIR:AT5G22780.1); Has 2529 Blast hits to 2470 proteins in 297 species: Archae - 0; Bacteria - 0; Metazoa - 987; Fungi - 687; Plants - 265; Viruses - 0; Other Eukaryotes - 590 (source: NCBI BLink). & (reliability: 1174.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021339.26","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021348.93","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021357.7","No alias","Cyanophora paradoxa","(at3g49400 : 82.4) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, sperm cell, flower; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781). & (reliability: 164.8) &  (original description: no original description)","protein_coding"
"evm.model.tig00021432.7","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021438.12","No alias","Cyanophora paradoxa","(at5g11850 : 108.0) Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein tyrosine kinase family protein (TAIR:AT1G73660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 214.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021464.10","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021521.27","No alias","Cyanophora paradoxa","(at5g58700 : 104.0) phosphatidylinositol-speciwc phospholipase C4 (PLC4); FUNCTIONS IN: phosphoinositide phospholipase C activity, phospholipase C activity, phosphoric diester hydrolase activity; INVOLVED IN: signal transduction, intracellular signaling pathway, lipid metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase C, phosphatidylinositol-specific , X domain (InterPro:IPR000909), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase C, phosphoinositol-specific (InterPro:IPR001192), Phospholipase C, phosphatidylinositol-specific, Y domain (InterPro:IPR001711), PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Phosphoinositide-specific phospholipase C family protein (TAIR:AT2G40116.1); Has 2441 Blast hits to 1951 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 1601; Fungi - 365; Plants - 252; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink). & (reliability: 208.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021534.3","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021579.20","No alias","Cyanophora paradoxa","(q43793|g6pdc_tobac : 414.0) Glucose-6-phosphate 1-dehydrogenase, chloroplast precursor (EC 1.1.1.49) (G6PD) - Nicotiana tabacum (Common tobacco) & (at5g35790 : 411.0) Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is more prevalent in developing organs but absent in the root.; glucose-6-phosphate dehydrogenase 1 (G6PD1); FUNCTIONS IN: glucose-6-phosphate dehydrogenase activity, protein binding; INVOLVED IN: pentose-phosphate shunt, oxidative branch, glucose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-6-phosphate dehydrogenase, C-terminal (InterPro:IPR022675), Glucose-6-phosphate dehydrogenase, active site (InterPro:IPR019796), NAD(P)-binding domain (InterPro:IPR016040), Glucose-6-phosphate dehydrogenase (InterPro:IPR001282), Glucose-6-phosphate dehydrogenase, NAD-binding (InterPro:IPR022674); BEST Arabidopsis thaliana protein match is: glucose-6-phosphate dehydrogenase 2 (TAIR:AT5G13110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 822.0) &  (original description: no original description)","protein_coding"
"Kfl00001_0720","kfl00001_0720_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00012_0140","kfl00012_0140_v1.1","Klebsormidium nitens","(at5g18230 : 336.0) transcription regulator NOT2/NOT3/NOT5 family protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: negative regulation of transcription, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282), CCR4-NOT complex, subunit 3/ 5 (InterPro:IPR012270), Not CCR4-Not complex component, N-terminal (InterPro:IPR007207); BEST Arabidopsis thaliana protein match is: NOT2 / NOT3 / NOT5 family (TAIR:AT1G07705.2); Has 3972 Blast hits to 2940 proteins in 410 species: Archae - 18; Bacteria - 365; Metazoa - 1231; Fungi - 912; Plants - 255; Viruses - 11; Other Eukaryotes - 1180 (source: NCBI BLink). & (reliability: 672.0) &  (original description: no original description)","protein_coding"
"Kfl00013_0230","kfl00013_0230_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00020_0360","kfl00020_0360_v1.1","Klebsormidium nitens","(at5g44180 : 223.0) Homeodomain-like transcriptional regulator; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), Homeobox (InterPro:IPR001356), DDT domain (InterPro:IPR004022), Homeodomain-like (InterPro:IPR009057), DDT domain, subgroup (InterPro:IPR018500), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox-1 (TAIR:AT1G28420.1). & (reliability: 446.0) &  (original description: no original description)","protein_coding"
"Kfl00020_0660","kfl00020_0660_v1.1","Klebsormidium nitens","(at2g40700 : 447.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G65900.1); Has 40440 Blast hits to 37904 proteins in 2977 species: Archae - 739; Bacteria - 19708; Metazoa - 6217; Fungi - 4486; Plants - 2481; Viruses - 5; Other Eukaryotes - 6804 (source: NCBI BLink). & (p46942|db10_nicsy : 97.4) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 894.0) &  (original description: no original description)","protein_coding"
"Kfl00024_0030","kfl00024_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00025_0370","kfl00025_0370_v1.1","Klebsormidium nitens","(at2g06210 : 769.0) Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit.  Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin.  Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin.; EARLY FLOWERING 8 (ELF8); FUNCTIONS IN: binding; INVOLVED IN: positive regulation of transcription, DNA-dependent, histone methylation, negative regulation of flower development; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G04240.1); Has 39956 Blast hits to 25035 proteins in 1980 species: Archae - 1189; Bacteria - 13149; Metazoa - 9789; Fungi - 2497; Plants - 1315; Viruses - 192; Other Eukaryotes - 11825 (source: NCBI BLink). & (reliability: 1538.0) &  (original description: no original description)","protein_coding"
"Kfl00026_0050","kfl00026_0050_v1.1","Klebsormidium nitens","(at5g45140 : 1509.0) Encodes a subunit of RNA polymerase III (aka RNA polymerase C).; nuclear RNA polymerase C2 (NRPC2); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding; INVOLVED IN: transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase Rpb2, domain 4 (InterPro:IPR007646), RNA polymerase Rpb2, domain 5 (InterPro:IPR007647), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein (TAIR:AT4G21710.1); Has 31946 Blast hits to 25220 proteins in 8516 species: Archae - 496; Bacteria - 14545; Metazoa - 599; Fungi - 7189; Plants - 2320; Viruses - 240; Other Eukaryotes - 6557 (source: NCBI BLink). & (p60283|rpob_phypa : 163.0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta) (RNA polymerase subunit beta) - Physcomitrella patens (Moss) & (reliability: 3018.0) &  (original description: no original description)","protein_coding"
"Kfl00028_0060","kfl00028_0060_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00031_0470","kfl00031_0470_v1.1","Klebsormidium nitens","(at1g50240 : 422.0) The FUSED (FU) gene belongs to Ser/Thr protein kinase family and has a key role in the hedgehog signaling pathway known to control cell proliferation and patterning in fruit flies and humans . Arabidopsis thaliana genome has a single Fu gene. Cytokinesis-defective mutants, which we named two-in-one (tio), result from mutations in Arabidopsis Fu. Phenotypic analysis of tio mutants reveals an essential role for TIO in conventional modes of cytokinesis in plant meristems and during male gametogenesis. TIO is tightly localized to the midline of the nascent phragmoplast and remains associated with the expanding phragmoplast ring. This gene was previously annotated as two gene models, AT1G50230.1 and AT1G50240.1, however the experimental evidence exists (Oh et al, Current Biology, 2005) showing that these two models are in fact single gene, named FUSED.; FUSED (FU); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), 26S proteasome non-ATPase regulatory subunit 5 (InterPro:IPR019538), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: serine/threonine protein kinase 2 (TAIR:AT3G08720.2); Has 138334 Blast hits to 135590 proteins in 4834 species: Archae - 164; Bacteria - 15793; Metazoa - 51363; Fungi - 13983; Plants - 33508; Viruses - 544; Other Eukaryotes - 22979 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 134.0) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 844.0) &  (original description: no original description)","protein_coding"
"Kfl00039_0410","kfl00039_0410_v1.1","Klebsormidium nitens","(at2g41020 : 129.0) WW domain-containing protein; CONTAINS InterPro DOMAIN/s: WW/Rsp5/WWP (InterPro:IPR001202); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 258.0) &  (original description: no original description)","protein_coding"
"Kfl00040_0420","kfl00040_0420_v1.1","Klebsormidium nitens","(at1g48360 : 150.0) zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HIP116, Rad5p N-terminal (InterPro:IPR014905); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 300.0) &  (original description: no original description)","protein_coding"
"Kfl00051_0300","kfl00051_0300_v1.1","Klebsormidium nitens","(at4g32820 : 190.0) Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); Has 168 Blast hits to 155 proteins in 63 species: Archae - 8; Bacteria - 15; Metazoa - 66; Fungi - 5; Plants - 51; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink). & (reliability: 380.0) &  (original description: no original description)","protein_coding"
"Kfl00066_0080","kfl00066_0080_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00066_0170","kfl00066_0170_v1.1","Klebsormidium nitens","(at3g19860 : 112.0) basic Helix-Loop-Helix 121 (bHLH121); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G36060.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 224.0) &  (original description: no original description)","protein_coding"
"Kfl00068_0290","kfl00068_0290_v1.1","Klebsormidium nitens","(at4g00060 : 184.0) maternal effect embryo arrest 44 (MEE44); FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: embryo development ending in seed dormancy; CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934), PAP/25A-associated (InterPro:IPR002058); BEST Arabidopsis thaliana protein match is: Nucleotidyltransferase family protein (TAIR:AT5G53770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 368.0) &  (original description: no original description)","protein_coding"
"Kfl00075_0280","kfl00075_0280_v1.1","Klebsormidium nitens","(at5g58760 : 538.0) Encodes a DDB1a interacting protein DDB2 required for UV-B tolerance and genomic integrity.; damaged DNA binding 2 (DDB2); FUNCTIONS IN: nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: DNA repair, response to UV-B; LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Zinc finger, CCHC-type (InterPro:IPR001878), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: DROUGHT SENSITIVE 1 (TAIR:AT1G80710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1076.0) &  (original description: no original description)","protein_coding"
"Kfl00084_0030","kfl00084_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00086_0350","kfl00086_0350_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00095_0140","kfl00095_0140_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00101_0250","kfl00101_0250_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00108_0010","kfl00108_0010_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00109_0260","kfl00109_0260_v1.1","Klebsormidium nitens","(at5g44750 : 392.0) Homologous to Y-family DNA polymerases, contains BRCT domain. Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).; REV1; FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: DNA repair, response to UV-B, response to DNA damage stimulus; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, Y-family, little finger domain (InterPro:IPR017961), DNA-repair protein, UmuC-like (InterPro:IPR001126), DNA-repair protein, UmuC-like, N-terminal (InterPro:IPR017963), DNA repair protein, Rev1 (InterPro:IPR012112), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: DNA/RNA polymerases superfamily protein (TAIR:AT1G49980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 784.0) &  (original description: no original description)","protein_coding"
"Kfl00114_0050","kfl00114_0050_v1.1","Klebsormidium nitens","(at5g39900 : 857.0) Small GTP-binding protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein LepA (InterPro:IPR006297), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), GTP-binding protein LepA, C-terminal (InterPro:IPR013842), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: Small GTP-binding protein (TAIR:AT5G08650.1); Has 79800 Blast hits to 74702 proteins in 10641 species: Archae - 1192; Bacteria - 44258; Metazoa - 8966; Fungi - 6189; Plants - 1305; Viruses - 1; Other Eukaryotes - 17889 (source: NCBI BLink). & (q9fe64|efgm_orysa : 96.7) Elongation factor G, mitochondrial precursor (mEF-G) - Oryza sativa (Rice) & (reliability: 1714.0) &  (original description: no original description)","protein_coding"
"Kfl00120_0140","kfl00120_0140_v1.1","Klebsormidium nitens","(at3g18060 : 653.0) transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), Nitrous oxide reductase, N-terminal (InterPro:IPR011045), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: nucleotide binding (TAIR:AT2G01330.2); Has 46825 Blast hits to 21434 proteins in 724 species: Archae - 58; Bacteria - 7760; Metazoa - 18076; Fungi - 9371; Plants - 5681; Viruses - 0; Other Eukaryotes - 5879 (source: NCBI BLink). & (reliability: 1306.0) &  (original description: no original description)","protein_coding"
"Kfl00123_0100","kfl00123_0100_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00127_0110","kfl00127_0110_v1.1","Klebsormidium nitens","(at3g61740 : 120.0) ATX3; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Post-SET domain (InterPro:IPR003616), PWWP (InterPro:IPR000313), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), SAND domain (InterPro:IPR000770), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: SET domain group 29 (TAIR:AT5G53430.1); Has 7727 Blast hits to 7398 proteins in 492 species: Archae - 2; Bacteria - 431; Metazoa - 3516; Fungi - 841; Plants - 1504; Viruses - 0; Other Eukaryotes - 1433 (source: NCBI BLink). & (reliability: 240.0) &  (original description: no original description)","protein_coding"
"Kfl00157_0180","kfl00157_0180_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00160_0100","kfl00160_0100_v1.1","Klebsormidium nitens","(at3g55160 : 416.0) unknown protein; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2428, death-receptor-like (InterPro:IPR019442); Has 357 Blast hits to 330 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 118; Plants - 50; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). & (reliability: 832.0) &  (original description: no original description)","protein_coding"
"Kfl00166_0050","kfl00166_0050_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00172_0160","kfl00172_0160_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00177_0010","kfl00177_0010_v1.1","Klebsormidium nitens","(at3g09150 : 220.0) Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin.  Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase.  It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.; ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 440.0) &  (original description: no original description)","protein_coding"
"Kfl00178_0130","kfl00178_0130_v1.1","Klebsormidium nitens","(at1g44910 : 89.0) Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold  for RNA processing machineries.; pre-mRNA-processing protein 40A (PRP40A); CONTAINS InterPro DOMAIN/s: FF domain (InterPro:IPR002713), WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: pre-mRNA-processing protein 40B (TAIR:AT3G19670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 178.0) &  (original description: no original description)","protein_coding"
"Kfl00184_0060","kfl00184_0060_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00197_0045","kfl00197_0045_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00205_0140","kfl00205_0140_v1.1","Klebsormidium nitens","(at4g37470 : 209.0) alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G03990.1); Has 8593 Blast hits to 8591 proteins in 1653 species: Archae - 86; Bacteria - 6869; Metazoa - 120; Fungi - 103; Plants - 302; Viruses - 19; Other Eukaryotes - 1094 (source: NCBI BLink). & (reliability: 418.0) &  (original description: no original description)","protein_coding"
"Kfl00219_0030","kfl00219_0030_v1.1","Klebsormidium nitens","(at3g24650 : 102.0) Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade.  Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed.  Alternative splicing of ABI3 is developmentally regulated by SUA (AT3G54230).; ABA INSENSITIVE 3 (ABI3); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G26790.1); Has 4494 Blast hits to 2758 proteins in 300 species: Archae - 0; Bacteria - 132; Metazoa - 1104; Fungi - 405; Plants - 1155; Viruses - 101; Other Eukaryotes - 1597 (source: NCBI BLink). & (p26307|viv1_maize : 101.0) Regulatory protein viviparous-1 - Zea mays (Maize) & (reliability: 194.2) &  (original description: no original description)","protein_coding"
"Kfl00236_0100","kfl00236_0100_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00242_0140","kfl00242_0140_v1.1","Klebsormidium nitens","(at4g38890 : 591.0) FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity, zinc ion binding, nucleic acid binding; INVOLVED IN: oxidation reduction, tRNA processing, metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269), tRNA-dihydrouridine synthase, conserved site (InterPro:IPR018517); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G49640.1); Has 11364 Blast hits to 11268 proteins in 2588 species: Archae - 15; Bacteria - 7817; Metazoa - 496; Fungi - 531; Plants - 173; Viruses - 0; Other Eukaryotes - 2332 (source: NCBI BLink). & (reliability: 1182.0) &  (original description: no original description)","protein_coding"
"Kfl00248_0060","kfl00248_0060_v1.1","Klebsormidium nitens","(at1g54385 : 84.7) ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G03970.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 169.4) &  (original description: no original description)","protein_coding"
"Kfl00249_0120","kfl00249_0120_v1.1","Klebsormidium nitens","(at5g11040 : 605.0) TRS120; CONTAINS InterPro DOMAIN/s: Transport protein Trs120 (InterPro:IPR013935); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1210.0) &  (original description: no original description)","protein_coding"
"Kfl00253_0110","kfl00253_0110_v1.1","Klebsormidium nitens","(at5g14620 : 189.0) A putative DNA methyltransferase with rearranged catalytic domains; similar to mammalian DNMT3 methyltransferases; contains UBA domains.  The 3'-end proximal part of the gene coding region is highly methylated at both adenine and cytosine residues.; domains rearranged methyltransferase 2 (DRM2); FUNCTIONS IN: N-methyltransferase activity; INVOLVED IN: DNA methylation, histone H3-K9 methylation; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525); BEST Arabidopsis thaliana protein match is: domains rearranged methylase 1 (TAIR:AT5G15380.1); Has 741 Blast hits to 627 proteins in 144 species: Archae - 0; Bacteria - 170; Metazoa - 285; Fungi - 0; Plants - 156; Viruses - 13; Other Eukaryotes - 117 (source: NCBI BLink). & (reliability: 378.0) &  (original description: no original description)","protein_coding"
"Kfl00267_0060","kfl00267_0060_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00281_0070","kfl00281_0070_v1.1","Klebsormidium nitens","(at3g05350 : 701.0) Metallopeptidase M24 family protein; FUNCTIONS IN: hydrolase activity, aminopeptidase activity; INVOLVED IN: proteolysis, cellular process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24, structural domain (InterPro:IPR000994), Creatinase (InterPro:IPR000587); BEST Arabidopsis thaliana protein match is: aminopeptidase P1 (TAIR:AT4G36760.1); Has 11788 Blast hits to 11217 proteins in 2602 species: Archae - 275; Bacteria - 7526; Metazoa - 334; Fungi - 310; Plants - 154; Viruses - 0; Other Eukaryotes - 3189 (source: NCBI BLink). & (reliability: 1402.0) &  (original description: no original description)","protein_coding"
"Kfl00285_0060","kfl00285_0060_v1.1","Klebsormidium nitens","(at5g19660 : 991.0) S1P appears to function as a Golgi-localized subtilase and to help protect seedlings against salt and osmotic stress. The roots of s1p-3 mutants are hypersensitive to NaCl, KCl, LiCl, and mannitol. Several salt-stress responsive genes show weaker induction in an s1P-3 mutant background. The proteolytic cleavage of the bZIP17 transcription factor depends on S1P in vitro. And there is evidence that S1P can cleave bZIP17 in vitro.; SITE-1 protease (S1P); CONTAINS InterPro DOMAIN/s: Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT1G20160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1982.0) &  (original description: no original description)","protein_coding"
"Kfl00338_0040","kfl00338_0040_v1.1","Klebsormidium nitens","(at5g02310 : 216.0) Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE).  Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.; proteolysis 6 (PRT6); CONTAINS InterPro DOMAIN/s: Zinc finger, N-recognin,  metazoa (InterPro:IPR013993), Zinc finger, N-recognin (InterPro:IPR003126); Has 1893 Blast hits to 778 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 939; Fungi - 577; Plants - 100; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 432.0) &  (original description: no original description)","protein_coding"
"Kfl00338_0050","kfl00338_0050_v1.1","Klebsormidium nitens","(at5g02310 : 149.0) Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE).  Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.; proteolysis 6 (PRT6); CONTAINS InterPro DOMAIN/s: Zinc finger, N-recognin,  metazoa (InterPro:IPR013993), Zinc finger, N-recognin (InterPro:IPR003126); Has 1893 Blast hits to 778 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 939; Fungi - 577; Plants - 100; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 298.0) &  (original description: no original description)","protein_coding"
"Kfl00357_0040","kfl00357_0040_v1.1","Klebsormidium nitens","(at4g09140 : 680.0) Encodes a protein with similarity to Mut1 DNA mismatch repair protein, from E.coli. The protein is expressed during prophase I of meiosis, colocalizes with MLH3 throughout pachytene and is dependent on MLH3 for proper localization.; MUTL-homologue 1 (MLH1); FUNCTIONS IN: protein binding, bridging; INVOLVED IN: in 6 processes; LOCATED IN: nuclear chromatin; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein Mlh1 (InterPro:IPR011186), DNA mismatch repair, conserved site (InterPro:IPR014762), ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA mismatch repair protein, C-terminal (InterPro:IPR013507), DNA mismatch repair protein, N-terminal (InterPro:IPR014763), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), DNA mismatch repair protein (InterPro:IPR002099), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: DNA mismatch repair protein, putative (TAIR:AT4G02460.1); Has 6802 Blast hits to 6727 proteins in 2342 species: Archae - 68; Bacteria - 4480; Metazoa - 469; Fungi - 496; Plants - 114; Viruses - 0; Other Eukaryotes - 1175 (source: NCBI BLink). & (reliability: 1360.0) &  (original description: no original description)","protein_coding"
"Kfl00372_0140","kfl00372_0140_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00396_0060","kfl00396_0060_v1.1","Klebsormidium nitens","(at5g18440 : 84.3) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear fragile X mental retardation-interacting protein 1, conserved region (InterPro:IPR019496); Has 1333 Blast hits to 1211 proteins in 205 species: Archae - 0; Bacteria - 137; Metazoa - 339; Fungi - 162; Plants - 70; Viruses - 6; Other Eukaryotes - 619 (source: NCBI BLink). & (reliability: 168.6) &  (original description: no original description)","protein_coding"
"Kfl00462_0100","kfl00462_0100_v1.1","Klebsormidium nitens","(at5g59500 : 112.0) protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferases; FUNCTIONS IN: protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity; INVOLVED IN: C-terminal protein amino acid methylation; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isoprenylcysteine carboxyl methyltransferase (InterPro:IPR007269); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 224.0) &  (original description: no original description)","protein_coding"
"Kfl00462_0120","kfl00462_0120_v1.1","Klebsormidium nitens","(at4g19670 : 199.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G60250.1); Has 3330 Blast hits to 3305 proteins in 225 species: Archae - 1; Bacteria - 6; Metazoa - 1257; Fungi - 660; Plants - 920; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink). & (reliability: 398.0) &  (original description: no original description)","protein_coding"
"Kfl00476_0060","kfl00476_0060_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00479_0060","kfl00479_0060_v1.1","Klebsormidium nitens","(at4g39690 : 129.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane protein Mitofilin (InterPro:IPR019133); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 258.0) &  (original description: no original description)","protein_coding"
"Kfl00483_0020","kfl00483_0020_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00497_0010","kfl00497_0010_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00517_0050","kfl00517_0050_v1.1","Klebsormidium nitens","(at1g18610 : 266.0) Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G74150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q60ex6|bsl1_orysa : 101.0) Serine/threonine protein phosphatase BSL1 homolog (EC 3.1.3.16) (BSU1-like protein 1 homolog) - Oryza sativa (Rice) & (reliability: 532.0) &  (original description: no original description)","protein_coding"
"Kfl00538_0020","kfl00538_0020_v1.1","Klebsormidium nitens","(at5g14230 : 285.0) CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink). & (reliability: 570.0) &  (original description: no original description)","protein_coding"
"Kfl00605_0010","kfl00605_0010_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00704_0030","kfl00704_0030_v1.1","Klebsormidium nitens","(at2g04270 : 213.0) Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose.; RNAse E/G-like (RNEE/G); CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Carbohydrate-binding-like fold (InterPro:IPR013784), Ribonuclease E/G (InterPro:IPR004659), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Immunoglobulin-like fold (InterPro:IPR013783), RNA-binding protein AU-1/Ribonuclease E/G (InterPro:IPR019307). & (reliability: 426.0) &  (original description: no original description)","protein_coding"
"Kfl00704_g4","kfl00704_g4_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00733_0020","kfl00733_0020_v1.1","Klebsormidium nitens","(at2g31650 : 263.0) Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Involved in trimethylating histone H3-lysine 4. Involved in the formation, placement, and identity of flower organs. Role in regulation of homeotic genes. Functions as a receptor of  phosphatidylinositol 5-phosphate. Localizes to cytoplasm, plasma membrane and nuclei, shifting to nuclei in the presence of PI5P.; homologue of trithorax (ATX1); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), FY-rich, C-terminal (InterPro:IPR003889), Post-SET domain (InterPro:IPR003616), FY-rich, N-terminal (InterPro:IPR003888), Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Lamin-B receptor of TUDOR domain (InterPro:IPR019023), FY-rich, C-terminal subgroup (InterPro:IPR018516), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), PWWP (InterPro:IPR000313), FY-rich, N-terminal subgroup (InterPro:IPR018518), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: trithorax-like protein 2 (TAIR:AT1G05830.2); Has 7192 Blast hits to 6948 proteins in 474 species: Archae - 2; Bacteria - 393; Metazoa - 3480; Fungi - 840; Plants - 1251; Viruses - 0; Other Eukaryotes - 1226 (source: NCBI BLink). & (q8s4p6|ez1_maize : 92.4) Polycomb protein EZ1 (Enhancer of zeste protein 1) - Zea mays (Maize) & (reliability: 526.0) &  (original description: no original description)","protein_coding"
"Kfl00751_0010","kfl00751_0010_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00772_0010","kfl00772_0010_v1.1","Klebsormidium nitens"," (original description: no original description)","protein_coding"
"Kfl00780_0030","kfl00780_0030_v1.1","Klebsormidium nitens","(at1g55860 : 726.0) encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.; ubiquitin-protein ligase 1 (UPL1); CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), E3 ubiquitin ligase, domain of unknown function DUF913 (InterPro:IPR010314), Ubiquitin interacting motif (InterPro:IPR003903), E3 ubiquitin ligase, domain of unknown function DUF908 (InterPro:IPR010309), HECT (InterPro:IPR000569), Armadillo-type fold (InterPro:IPR016024), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 2 (TAIR:AT1G70320.1). & (reliability: 1452.0) &  (original description: no original description)","protein_coding"
"Kfl00868_0020","kfl00868_0020_v1.1","Klebsormidium nitens","(at3g14740 : 130.0) RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 246.0) &  (original description: no original description)","protein_coding"
"Mp1g10590.1","No alias","Marchantia polymorpha","Intraflagellar transport protein 46 OS=Chlamydomonas reinhardtii (sp|a2t2x4|ift46_chlre : 221.0)","protein_coding"
"Mp1g20340.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp2g03340.1","No alias","Marchantia polymorpha","Peroxidase 51 OS=Arabidopsis thaliana (sp|q9sze7|per51_arath : 258.0)","protein_coding"
"Mp2g14520.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp2g25900.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp3g17870.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp4g16400.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Pp1s87_27V6","No alias","Physcomitrella patens","ift46 protein","protein_coding"