"sequence_id","alias","species","description","type" "103635","No alias","Selaginella moellendorffii ","flowering promoting factor 1","protein_coding" "105194","No alias","Selaginella moellendorffii ","meristematic receptor-like kinase","protein_coding" "110353","No alias","Selaginella moellendorffii ","SET domain group 4","protein_coding" "112151","No alias","Selaginella moellendorffii ","cytochrome P450, family 716, subfamily A, polypeptide 1","protein_coding" "113793","No alias","Selaginella moellendorffii ","Nucleotide-diphospho-sugar transferases superfamily protein","protein_coding" "119860","No alias","Selaginella moellendorffii ","Leucine-rich receptor-like protein kinase family protein","protein_coding" "126297","No alias","Selaginella moellendorffii ","aluminum-activated malate transporter 9","protein_coding" "134000","No alias","Selaginella moellendorffii ","disease resistance protein (TIR-NBS-LRR class)","protein_coding" "135053","No alias","Selaginella moellendorffii ","Peroxidase superfamily protein","protein_coding" "137292","No alias","Selaginella moellendorffii ","DNA-directed RNA polymerase, subunit M, archaeal","protein_coding" "139849","No alias","Selaginella moellendorffii ","isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2","protein_coding" "141493","No alias","Selaginella moellendorffii ","RPA70-kDa subunit B","protein_coding" "172571","No alias","Selaginella moellendorffii ","NAD(P)-binding Rossmann-fold superfamily protein","protein_coding" "232066","No alias","Selaginella moellendorffii ","ADP-ribosylation factor A1F","protein_coding" "403330","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "403671","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "404557","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "407081","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "407326","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "408124","No alias","Selaginella moellendorffii ","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding" "408645","No alias","Selaginella moellendorffii ","inositol polyphosphate 5-phosphatase 11","protein_coding" "412258","No alias","Selaginella moellendorffii ","Cellulose-synthase-like C5","protein_coding" "413376","No alias","Selaginella moellendorffii ","ARM repeat superfamily protein","protein_coding" "413573","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "414672","No alias","Selaginella moellendorffii ","methyl esterase 18","protein_coding" "415236","No alias","Selaginella moellendorffii ","Class I peptide chain release factor","protein_coding" "416243","No alias","Selaginella moellendorffii ","plant U-box 25","protein_coding" "416307","No alias","Selaginella moellendorffii ","Sec23/Sec24 protein transport family protein","protein_coding" "417526","No alias","Selaginella moellendorffii ","UDP-Glycosyltransferase superfamily protein","protein_coding" "417843","No alias","Selaginella moellendorffii ","DNA topoisomerase, type IA, core","protein_coding" "420353","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "420429","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "422513","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "427627","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "427628","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "442656","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "443825","No alias","Selaginella moellendorffii ","basic region/leucine zipper motif protein 49","protein_coding" "444270","No alias","Selaginella moellendorffii ","glycine-rich protein","protein_coding" "59042","No alias","Selaginella moellendorffii ","Disease resistance-responsive (dirigent-like protein) family protein","protein_coding" "59628","No alias","Selaginella moellendorffii ","AP2/B3-like transcriptional factor family protein","protein_coding" "59777","No alias","Selaginella moellendorffii ","NADH-ubiquinone oxidoreductase-related","protein_coding" "60551","No alias","Selaginella moellendorffii ","Stabilizer of iron transporter SufD / Polynucleotidyl transferase","protein_coding" "69757","No alias","Selaginella moellendorffii ","Rab5-interacting family protein","protein_coding" "74439","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "75479","No alias","Selaginella moellendorffii ","O-Glycosyl hydrolases family 17 protein","protein_coding" "76283","No alias","Selaginella moellendorffii ","germin-like protein 5","protein_coding" "78362","No alias","Selaginella moellendorffii ","ABC transporter family protein","protein_coding" "78436","No alias","Selaginella moellendorffii ","DNA primases;DNA primases","protein_coding" "78525","No alias","Selaginella moellendorffii ","DNA primases;DNA primases","protein_coding" "80139","No alias","Selaginella moellendorffii ","SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein","protein_coding" "80644","No alias","Selaginella moellendorffii ","Thiamine pyrophosphate dependent pyruvate decarboxylase family protein","protein_coding" "81509","No alias","Selaginella moellendorffii ","glutamine-dependent asparagine synthase 1","protein_coding" "84640","No alias","Selaginella moellendorffii ","armadillo repeat kinesin 2","protein_coding" "88080","No alias","Selaginella moellendorffii ","DNA primase, large subunit family","protein_coding" "88206","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "9272","No alias","Selaginella moellendorffii ","cyclin-dependent kinase-subunit 1","protein_coding" "A4A49_16121","No alias","Nicotiana attenuata","hypothetical protein","protein_coding" "A4A49_19855","No alias","Nicotiana attenuata","putative dna primase large subunit","protein_coding" "AC205274.3_FG001","No alias","Zea mays","pathogenesis-related gene 1","protein_coding" "AC213398.3_FG007","No alias","Zea mays","Function unknown","protein_coding" "At1g02870","No alias","Arabidopsis thaliana","At1g02870 [Source:UniProtKB/TrEMBL;Acc:Q8RWK5]","protein_coding" "At1g03310","No alias","Arabidopsis thaliana","ISA2 [Source:UniProtKB/TrEMBL;Acc:A0A178WGA8]","protein_coding" "At1g03360","No alias","Arabidopsis thaliana","RRP4 [Source:UniProtKB/TrEMBL;Acc:A0A178W3N1]","protein_coding" "At1g04020","No alias","Arabidopsis thaliana","Breast cancer associated RING 1 [Source:UniProtKB/TrEMBL;Acc:A0A2H1ZEA6]","protein_coding" "At1g07370","No alias","Arabidopsis thaliana","Proliferating cellular nuclear antigen 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M7Q7]","protein_coding" "At1g08130","No alias","Arabidopsis thaliana","DNA ligase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42572]","protein_coding" "At1g08580","No alias","Arabidopsis thaliana","At1g08580 [Source:UniProtKB/TrEMBL;Acc:Q9FRS7]","protein_coding" "At1g10490","No alias","Arabidopsis thaliana","RNA cytidine acetyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIK4]","protein_coding" "At1g11320","No alias","Arabidopsis thaliana","GDSL esterase/lipase [Source:UniProtKB/TrEMBL;Acc:Q9SXB7]","protein_coding" "At1g15250","No alias","Arabidopsis thaliana","60S ribosomal protein L37-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFH7]","protein_coding" "At1g15480","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At1g15480, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9XI21]","protein_coding" "At1g29940","No alias","Arabidopsis thaliana","DNA-directed RNA polymerase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A178W5B4]","protein_coding" "At1g31860","No alias","Arabidopsis thaliana","Histidine biosynthesis bifunctional protein hisIE, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82768]","protein_coding" "At1g48630","No alias","Arabidopsis thaliana","RACK1B_AT [Source:UniProtKB/TrEMBL;Acc:A0A178W908]","protein_coding" "At1g48830","No alias","Arabidopsis thaliana","40S ribosomal protein S7 [Source:UniProtKB/TrEMBL;Acc:A0A178WGF0]","protein_coding" "At1g48920","No alias","Arabidopsis thaliana","Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1]","protein_coding" "At1g49540","No alias","Arabidopsis thaliana","Elongator protein 2 [Source:UniProtKB/TrEMBL;Acc:F4I1S8]","protein_coding" "At1g51380","No alias","Arabidopsis thaliana","DEAD-box ATP-dependent RNA helicase 34 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8J1]","protein_coding" "At1g51980","No alias","Arabidopsis thaliana","Probable mitochondrial-processing peptidase subunit alpha-1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU25]","protein_coding" "At1g52930","No alias","Arabidopsis thaliana","Ribosome biogenesis protein BRX1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C928]","protein_coding" "At1g54690","No alias","Arabidopsis thaliana","Probable histone H2AXb [Source:UniProtKB/Swiss-Prot;Acc:Q9S9K7]","protein_coding" "At1g57820","No alias","Arabidopsis thaliana","E3 ubiquitin-protein ligase ORTHRUS 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYZ0]","protein_coding" "At1g60800","No alias","Arabidopsis thaliana","Protein NSP-INTERACTING KINASE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93ZS4]","protein_coding" "At1g62150","No alias","Arabidopsis thaliana","Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:Q8GWB0]","protein_coding" "At1g63050","No alias","Arabidopsis thaliana","LPLAT2 [Source:UniProtKB/TrEMBL;Acc:A0A178WEX3]","protein_coding" "At1g63660","No alias","Arabidopsis thaliana","At1g63660 [Source:UniProtKB/TrEMBL;Acc:Q9CAD1]","protein_coding" "At1g64600","No alias","Arabidopsis thaliana","At1g64600 [Source:UniProtKB/TrEMBL;Acc:Q8GW63]","protein_coding" "At1g64880","No alias","Arabidopsis thaliana","At1g64880 [Source:UniProtKB/TrEMBL;Acc:Q6GKU7]","protein_coding" "At1g67320","No alias","Arabidopsis thaliana","DNA primase large subunit [Source:UniProtKB/TrEMBL;Acc:F4HRU9]","protein_coding" "At1g69200","No alias","Arabidopsis thaliana","Fructokinase-like 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4I0K2]","protein_coding" "At1g71260","No alias","Arabidopsis thaliana","Single-stranded DNA-binding protein WHY2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VYF7]","protein_coding" "At1g73620","No alias","Arabidopsis thaliana","Pathogenesis-related thaumatin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C9U9]","protein_coding" "At1g77550","No alias","Arabidopsis thaliana","At1g77550 [Source:UniProtKB/TrEMBL;Acc:Q6IDC7]","protein_coding" "At1g78610","No alias","Arabidopsis thaliana","Mechanosensitive ion channel protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYM1]","protein_coding" "At1g80270","No alias","Arabidopsis thaliana","PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6]","protein_coding" "At2g03090","No alias","Arabidopsis thaliana","EXPA15 [Source:UniProtKB/TrEMBL;Acc:A0A178VZP8]","protein_coding" "At2g07690","No alias","Arabidopsis thaliana","DNA replication licensing factor MCM5 [Source:UniProtKB/Swiss-Prot;Acc:O80786]","protein_coding" "At2g07750","No alias","Arabidopsis thaliana","Putative DEAD-box ATP-dependent RNA helicase 33 [Source:UniProtKB/Swiss-Prot;Acc:O80792]","protein_coding" "At2g15690","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At2g15690, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQE5]","protein_coding" "At2g16440","No alias","Arabidopsis thaliana","DNA replication licensing factor MCM4 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVF5]","protein_coding" "At2g18220","No alias","Arabidopsis thaliana","Nucleolar complex protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPV5]","protein_coding" "At2g18900","No alias","Arabidopsis thaliana","Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IRI1]","protein_coding" "At2g21380","No alias","Arabidopsis thaliana","Kinesin-like protein KIN-7M, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SJU0]","protein_coding" "At2g21790","No alias","Arabidopsis thaliana","Ribonucleoside-diphosphate reductase large subunit [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ20]","protein_coding" "At2g21860","No alias","Arabidopsis thaliana","At2g21860/F7D8.18 [Source:UniProtKB/TrEMBL;Acc:Q9SJ13]","protein_coding" "At2g24490","No alias","Arabidopsis thaliana","RPA32A [Source:UniProtKB/TrEMBL;Acc:A0A178VTA7]","protein_coding" "At2g25355","No alias","Arabidopsis thaliana","At2g25350/F13B15.1 [Source:UniProtKB/TrEMBL;Acc:Q94AW9]","protein_coding" "At2g30420","No alias","Arabidopsis thaliana","MYB-like transcription factor ETC2 [Source:UniProtKB/Swiss-Prot;Acc:Q84RD1]","protein_coding" "At2g37560","No alias","Arabidopsis thaliana","Origin of replication complex subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q38899]","protein_coding" "At2g37860","No alias","Arabidopsis thaliana","Protein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]","protein_coding" "At2g39710","No alias","Arabidopsis thaliana","Eukaryotic aspartyl protease family protein [Source:UniProtKB/TrEMBL;Acc:O22282]","protein_coding" "At2g39850","No alias","Arabidopsis thaliana","Subtilisin-like protease SBT4.1 [Source:UniProtKB/Swiss-Prot;Acc:F4IG09]","protein_coding" "At2g40660","No alias","Arabidopsis thaliana","Nucleic acid-binding, OB-fold-like protein [Source:UniProtKB/TrEMBL;Acc:Q93VB0]","protein_coding" "At2g41190","No alias","Arabidopsis thaliana","Amino acid transporter AVT1A [Source:UniProtKB/Swiss-Prot;Acc:O80668]","protein_coding" "At2g43630","No alias","Arabidopsis thaliana","Nucleusenvelope protein [Source:UniProtKB/TrEMBL;Acc:Q8VYY8]","protein_coding" "At3g02650","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At3g02650, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C896]","protein_coding" "At3g03060","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WVF7]","protein_coding" "At3g05650","No alias","Arabidopsis thaliana","Receptor-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9X0]","protein_coding" "At3g06530","No alias","Arabidopsis thaliana","ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP28]","protein_coding" "At3g06980","No alias","Arabidopsis thaliana","DEAD-box ATP-dependent RNA helicase 50 [Source:UniProtKB/Swiss-Prot;Acc:Q8GUG7]","protein_coding" "At3g07770","No alias","Arabidopsis thaliana","Heat shock protein 90-6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4JFN3]","protein_coding" "At3g09480","No alias","Arabidopsis thaliana","Histone H2B [Source:UniProtKB/TrEMBL;Acc:A0A178V4X7]","protein_coding" "At3g09630","No alias","Arabidopsis thaliana","60S ribosomal protein L4-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF40]","protein_coding" "At3g10530","No alias","Arabidopsis thaliana","F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]","protein_coding" "At3g12270","No alias","Arabidopsis thaliana","Probable protein arginine N-methyltransferase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVD6]","protein_coding" "At3g12340","No alias","Arabidopsis thaliana","Peptidyl-prolyl cis-trans isomerase FKBP43 [Source:UniProtKB/Swiss-Prot;Acc:F4J9Q6]","protein_coding" "At3g13940","No alias","Arabidopsis thaliana","DNA binding / DNA-directed RNA polymerase [Source:UniProtKB/TrEMBL;Acc:Q9LVK6]","protein_coding" "At3g16780","No alias","Arabidopsis thaliana","60S ribosomal protein L19-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUQ6]","protein_coding" "At3g18440","No alias","Arabidopsis thaliana","Aluminum-activated malate transporter 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS46]","protein_coding" "At3g20240","No alias","Arabidopsis thaliana","Probable mitochondrial adenine nucleotide transporter BTL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJX5]","protein_coding" "At3g25110","No alias","Arabidopsis thaliana","Oleoyl-acyl carrier protein thioesterase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42561]","protein_coding" "At3g27640","No alias","Arabidopsis thaliana","Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94C55]","protein_coding" "At3g42660","No alias","Arabidopsis thaliana","Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:F4JF14]","protein_coding" "At3g44590","No alias","Arabidopsis thaliana","Acidic ribosomal protein P2-like [Source:UniProtKB/TrEMBL;Acc:Q0WRF9]","protein_coding" "At3g44750","No alias","Arabidopsis thaliana","Histone deacetylase HDT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVE6]","protein_coding" "At3g46210","No alias","Arabidopsis thaliana","Exosome complex exonuclease RRP46 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LX74]","protein_coding" "At3g53020","No alias","Arabidopsis thaliana","60S ribosomal protein L24-2 [Source:UniProtKB/Swiss-Prot;Acc:P38666]","protein_coding" "At3g53700","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At3g53700, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LFF1]","protein_coding" "At3g55510","No alias","Arabidopsis thaliana","Noc2p family [Source:UniProtKB/TrEMBL;Acc:Q0WVH0]","protein_coding" "At3g57940","No alias","Arabidopsis thaliana","RNA cytidine acetyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Q4]","protein_coding" "At3g63090","No alias","Arabidopsis thaliana","Ubiquitin carboxyl-terminal hydrolase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYB3]","protein_coding" "At4g02060","No alias","Arabidopsis thaliana","DNA replication licensing factor MCM7 [Source:UniProtKB/Swiss-Prot;Acc:P43299]","protein_coding" "At4g03100","No alias","Arabidopsis thaliana","Rho GTPase-activating protein 2 [Source:UniProtKB/Swiss-Prot;Acc:F4JI46]","protein_coding" "At4g04790","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At4g04790, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ81]","protein_coding" "At4g05410","No alias","Arabidopsis thaliana","U3 snoRNP-associated protein-like YAO [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V4]","protein_coding" "At4g10480","No alias","Arabidopsis thaliana","Putative alpha NAC [Source:UniProtKB/TrEMBL;Acc:Q0WWN5]","protein_coding" "At4g15000","No alias","Arabidopsis thaliana","60S ribosomal protein L27 [Source:UniProtKB/TrEMBL;Acc:Q0WRB8]","protein_coding" "At4g15640","No alias","Arabidopsis thaliana","Adenylyl cyclase [Source:UniProtKB/TrEMBL;Acc:Q1JPP0]","protein_coding" "At4g16390","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]","protein_coding" "At4g17770","No alias","Arabidopsis thaliana","Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5 [Source:UniProtKB/Swiss-Prot;Acc:O23617]","protein_coding" "At4g21380","No alias","Arabidopsis thaliana","Receptor-like serine/threonine-protein kinase SD1-8 [Source:UniProtKB/Swiss-Prot;Acc:O81905]","protein_coding" "At4g26080","No alias","Arabidopsis thaliana","Protein phosphatase 2C 56 [Source:UniProtKB/Swiss-Prot;Acc:P49597]","protein_coding" "At4g26970","No alias","Arabidopsis thaliana","Aconitate hydratase [Source:UniProtKB/TrEMBL;Acc:A0A178UVE5]","protein_coding" "At4g28310","No alias","Arabidopsis thaliana","At4g28310 [Source:UniProtKB/TrEMBL;Acc:Q8LDV4]","protein_coding" "At4g29510","No alias","Arabidopsis thaliana","Protein arginine N-methyltransferase 1.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SU94]","protein_coding" "At4g31210","No alias","Arabidopsis thaliana","DNA topoisomerase, type IA, core [Source:UniProtKB/TrEMBL;Acc:F4JRX3]","protein_coding" "At4g31700","No alias","Arabidopsis thaliana","40S ribosomal protein S6-1 [Source:UniProtKB/Swiss-Prot;Acc:O48549]","protein_coding" "At4g34910","No alias","Arabidopsis thaliana","DEAD-box ATP-dependent RNA helicase 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW44]","protein_coding" "At4g38100","No alias","Arabidopsis thaliana","Protein CURVATURE THYLAKOID 1D, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LDD3]","protein_coding" "At5g02430","No alias","Arabidopsis thaliana","Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LZ59]","protein_coding" "At5g02820","No alias","Arabidopsis thaliana","DNA topoisomerase 6 subunit A [Source:UniProtKB/TrEMBL;Acc:A0A178UQD3]","protein_coding" "At5g03340","No alias","Arabidopsis thaliana","Cell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]","protein_coding" "At5g07320","No alias","Arabidopsis thaliana","Mitochondrial substrate carrier family protein [Source:UniProtKB/TrEMBL;Acc:Q9LY28]","protein_coding" "At5g07340","No alias","Arabidopsis thaliana","Calreticulin family protein [Source:UniProtKB/TrEMBL;Acc:F4K6M8]","protein_coding" "At5g08570","No alias","Arabidopsis thaliana","Pyruvate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178UBM6]","protein_coding" "At5g08610","No alias","Arabidopsis thaliana","PDE340 [Source:UniProtKB/TrEMBL;Acc:A0A178UFQ6]","protein_coding" "At5g10690","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At5g10690 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYD6]","protein_coding" "At5g13520","No alias","Arabidopsis thaliana","Leucine aminopeptidase [Source:UniProtKB/Swiss-Prot;Acc:Q9FY49]","protein_coding" "At5g14520","No alias","Arabidopsis thaliana","Pescadillo homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LYK7]","protein_coding" "At5g14580","No alias","Arabidopsis thaliana","Polyribonucleotide nucleotidyltransferase 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9S7G6]","protein_coding" "At5g15750","No alias","Arabidopsis thaliana","Alpha-L RNA-binding motif/Ribosomal protein S4 family protein [Source:UniProtKB/TrEMBL;Acc:Q683D4]","protein_coding" "At5g15980","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At5g15980, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF1]","protein_coding" "At5g16750","No alias","Arabidopsis thaliana","Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9LFE2]","protein_coding" "At5g18440","No alias","Arabidopsis thaliana","NUFIP [Source:UniProtKB/TrEMBL;Acc:A0A178UB40]","protein_coding" "At5g18750","No alias","Arabidopsis thaliana","DNAJ heat shock N-terminal domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q3E9D9]","protein_coding" "At5g20150","No alias","Arabidopsis thaliana","SPX domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBH4]","protein_coding" "At5g24330","No alias","Arabidopsis thaliana","Histone-lysine N-methyltransferase ATXR6 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNE9]","protein_coding" "At5g27330","No alias","Arabidopsis thaliana","Prefoldin chaperone subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4K498]","protein_coding" "At5g27390","No alias","Arabidopsis thaliana","Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein [Source:TAIR;Acc:AT5G27390]","protein_coding" "At5g37630","No alias","Arabidopsis thaliana","ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K790]","protein_coding" "At5g41190","No alias","Arabidopsis thaliana","RNA-binding NOB1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL1]","protein_coding" "At5g41880","No alias","Arabidopsis thaliana","DNA primase [Source:UniProtKB/TrEMBL;Acc:F4JZZ1]","protein_coding" "At5g46280","No alias","Arabidopsis thaliana","DNA replication licensing factor MCM3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL33]","protein_coding" "At5g46740","No alias","Arabidopsis thaliana","Ubiquitin carboxyl-terminal hydrolase 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIQ1]","protein_coding" "At5g46920","No alias","Arabidopsis thaliana","Nuclear intron maturase 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FJR9]","protein_coding" "At5g56500","No alias","Arabidopsis thaliana","Chaperonin 60 subunit beta 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:C0Z361]","protein_coding" "At5g59870","No alias","Arabidopsis thaliana","Probable histone H2A.7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJE8]","protein_coding" "At5g60040","No alias","Arabidopsis thaliana","DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F4JXF8]","protein_coding" "At5g61000","No alias","Arabidopsis thaliana","Replication protein A subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UJ91]","protein_coding" "At5g61780","No alias","Arabidopsis thaliana","Ribonuclease TUDOR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLT0]","protein_coding" "At5g61810","No alias","Arabidopsis thaliana","Mitochondrial substrate carrier family protein [Source:UniProtKB/TrEMBL;Acc:Q9FLS8]","protein_coding" "At5g64670","No alias","Arabidopsis thaliana","Ribosomal protein L18e/L15 superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FLF3]","protein_coding" "At5g65360","No alias","Arabidopsis thaliana","Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20]","protein_coding" "At5g65860","No alias","Arabidopsis thaliana","Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q2V2U9]","protein_coding" "At5g67510","No alias","Arabidopsis thaliana","60S ribosomal protein L26-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJX2]","protein_coding" "Bradi1g05735","No alias","Brachypodium distachyon","photosystem II reaction center protein H","protein_coding" "Bradi1g12130","No alias","Brachypodium distachyon","chlorophyll A/B binding protein 1","protein_coding" "Bradi1g18745","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi1g19400","No alias","Brachypodium distachyon","ARM repeat superfamily protein","protein_coding" "Bradi1g21632","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi1g32080","No alias","Brachypodium distachyon","RING-H2 finger A3A","protein_coding" "Bradi1g34080","No alias","Brachypodium distachyon","26S proteasome regulatory subunit S2 1A","protein_coding" "Bradi1g39221","No alias","Brachypodium distachyon","ATPase, F0 complex, subunit A protein","protein_coding" "Bradi1g44830","No alias","Brachypodium distachyon","Putative thiol-disulphide oxidoreductase DCC","protein_coding" "Bradi1g47130","No alias","Brachypodium distachyon","Leucine-rich receptor-like protein kinase family protein","protein_coding" "Bradi1g49854","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi1g54111","No alias","Brachypodium distachyon","basic helix-loop-helix (bHLH) DNA-binding superfamily protein","protein_coding" "Bradi1g54710","No alias","Brachypodium distachyon","Ankyrin repeat family protein","protein_coding" "Bradi1g57480","No alias","Brachypodium distachyon","Protein of unknown function, DUF547","protein_coding" "Bradi1g57970","No alias","Brachypodium distachyon","C-repeat/DRE binding factor 2","protein_coding" "Bradi1g68478","No alias","Brachypodium distachyon","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding" "Bradi2g05094","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi2g07640","No alias","Brachypodium distachyon","Late embryogenesis abundant protein, group 2","protein_coding" "Bradi2g09585","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi2g16190","No alias","Brachypodium distachyon","F-box/RNI-like/FBD-like domains-containing protein","protein_coding" "Bradi2g28050","No alias","Brachypodium distachyon","Ubiquitin supergroup;Ribosomal protein L40e","protein_coding" "Bradi2g29916","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi2g31611","No alias","Brachypodium distachyon","ribosomal protein S19","protein_coding" "Bradi2g39127","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi2g50615","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi2g56630","No alias","Brachypodium distachyon","Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein","protein_coding" "Bradi2g57427","No alias","Brachypodium distachyon","Pectin lyase-like superfamily protein","protein_coding" "Bradi2g59450","No alias","Brachypodium distachyon","Heavy metal transport/detoxification superfamily protein","protein_coding" "Bradi2g59670","No alias","Brachypodium distachyon","NAD(P)-binding Rossmann-fold superfamily protein","protein_coding" "Bradi3g03817","No alias","Brachypodium distachyon","DNA primases;DNA primases","protein_coding" "Bradi3g04162","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi3g05611","No alias","Brachypodium distachyon","ENTH/ANTH/VHS superfamily protein","protein_coding" "Bradi3g07533","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi3g19390","No alias","Brachypodium distachyon","Ribosomal protein L10 family protein","protein_coding" "Bradi3g26717","No alias","Brachypodium distachyon","Transmembrane amino acid transporter family protein","protein_coding" "Bradi3g27917","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi3g30160","No alias","Brachypodium distachyon","Glutamyl-tRNA reductase family protein","protein_coding" "Bradi3g36095","No alias","Brachypodium distachyon","glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein","protein_coding" "Bradi3g41507","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi3g42937","No alias","Brachypodium distachyon","DNA primases;DNA primases","protein_coding" "Bradi3g54398","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi3g59420","No alias","Brachypodium distachyon","RWP-RK domain-containing protein","protein_coding" "Bradi3g60420","No alias","Brachypodium distachyon","replicon protein A2","protein_coding" "Bradi4g05027","No alias","Brachypodium distachyon","cellulose synthase-like D5","protein_coding" "Bradi4g06780","No alias","Brachypodium distachyon","ureide permease 1","protein_coding" "Bradi4g09860","No alias","Brachypodium distachyon","tetratricopeptide repeat (TPR)-containing protein","protein_coding" "Bradi4g10422","No alias","Brachypodium distachyon","cysteine-rich RLK (RECEPTOR-like protein kinase) 7","protein_coding" "Bradi4g11810","No alias","Brachypodium distachyon","F-box/RNI-like/FBD-like domains-containing protein","protein_coding" "Bradi4g12975","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi4g14033","No alias","Brachypodium distachyon","BTB-POZ and MATH domain 2","protein_coding" "Bradi4g14861","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi4g21195","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi4g24100","No alias","Brachypodium distachyon","NAC domain containing protein 25","protein_coding" "Bradi4g24635","No alias","Brachypodium distachyon","Ribosomal L29e protein family","protein_coding" "Bradi4g26976","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi4g29707","No alias","Brachypodium distachyon","xyloglucan endotransglucosylase/hydrolase 28","protein_coding" "Bradi4g30960","No alias","Brachypodium distachyon","Histone superfamily protein","protein_coding" "Bradi4g31508","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi4g34910","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi5g03773","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi5g03780","No alias","Brachypodium distachyon","Subtilase family protein","protein_coding" "Bradi5g06936","No alias","Brachypodium distachyon","photosystem II reaction center protein E","protein_coding" "Bradi5g07930","No alias","Brachypodium distachyon","DNA primase, large subunit family","protein_coding" "Bradi5g21510","No alias","Brachypodium distachyon","Carbohydrate-binding X8 domain superfamily protein","protein_coding" "Bradi5g22611","No alias","Brachypodium distachyon","Translation initiation factor SUI1 family protein","protein_coding" "Brara.A00259.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A00332.1","No alias","Brassica rapa","peptidyl-prolyl cis-trans isomerase *(CYP21-1) & EC_5.2 cis-trans-isomerase","protein_coding" "Brara.A00392.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A00624.1","No alias","Brassica rapa","subunit beta of cargo adaptor F-subcomplex","protein_coding" "Brara.A00819.1","No alias","Brassica rapa","regulatory component *(RPT2) of 26S proteasome","protein_coding" "Brara.A00999.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A01054.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A01184.1","No alias","Brassica rapa","component *(APC4) of (APC/C)-dependent ubiquitination platform subcomplex","protein_coding" "Brara.A01274.1","No alias","Brassica rapa","component *(KAE1) of tRNA N6-threonylcarbamoylation KEOPS/EKC complex","protein_coding" "Brara.A01454.1","No alias","Brassica rapa","subunit alpha of RAB-GTPase geranylgeranyltransferase (RGT) complex & EC_2.5 transferase transferring alkyl or aryl group, other than methyl group","protein_coding" "Brara.A01757.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A01815.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A02267.1","No alias","Brassica rapa","ER luminal lectin chaperone *(CRT)","protein_coding" "Brara.A02480.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A02489.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A02836.1","No alias","Brassica rapa","subunit alpha of CCT chaperonin folding complex *(CCT1)","protein_coding" "Brara.A02993.1","No alias","Brassica rapa","component *(uL3m) of large mitoribosomal-subunit proteome","protein_coding" "Brara.A03871.1","No alias","Brassica rapa","component *(CTNNBL1) of MAC spliceosome-associated complex","protein_coding" "Brara.B00797.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.B01714.1","No alias","Brassica rapa","primase component *(POLA3) of DNA polymerase alpha complex","protein_coding" "Brara.B01734.1","No alias","Brassica rapa","replication fork tethering component *(POLA2) of DNA polymerase alpha complex","protein_coding" "Brara.B01744.1","No alias","Brassica rapa","clade B phosphatase","protein_coding" "Brara.B02372.1","No alias","Brassica rapa","glyceraldehyde 3-phosphate dehydrogenase & EC_1.2 oxidoreductase acting on aldehyde or oxo group of donor","protein_coding" "Brara.B02533.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.B02819.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.B02883.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.B03550.1","No alias","Brassica rapa","histone *(H2A)","protein_coding" "Brara.B03607.1","No alias","Brassica rapa","glutamate-tRNA ligase","protein_coding" "Brara.B03718.1","No alias","Brassica rapa","DNA bending architectural protein *(HMG-B)","protein_coding" "Brara.B03814.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.C00128.1","No alias","Brassica rapa","regulatory kinase *(CTR1) of EIN2 signal transducer activity & MAP3K-RAF protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.C00191.1","No alias","Brassica rapa","EC_3.1 hydrolase acting on ester bond & pectin methylesterase","protein_coding" "Brara.C00290.1","No alias","Brassica rapa","mRNA endoribonuclease *(TSN)","protein_coding" "Brara.C00322.1","No alias","Brassica rapa","component *(RPA1) of single-stranded-DNA binding RPA complex & component *(RPA1) of RPA presynaptic filament assembly factor complex","protein_coding" "Brara.C00427.1","No alias","Brassica rapa","AP2-type transcription factor *(WRI/AIL)","protein_coding" "Brara.C00699.1","No alias","Brassica rapa","component *(SMC5) of homologous recombination repair Smc5-Smc6 complex","protein_coding" "Brara.C00757.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.C00815.1","No alias","Brassica rapa","apyrase *(APY) & EC_3.6 hydrolase acting on acid anhydride","protein_coding" "Brara.C00973.1","No alias","Brassica rapa","calcium sensor *(CML) & calcium sensor *(CaM)","protein_coding" "Brara.C01220.1","No alias","Brassica rapa","histone *(H4)","protein_coding" "Brara.C01325.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.C01733.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.C01868.1","No alias","Brassica rapa","component *(mL102) of large mitoribosomal-subunit proteome","protein_coding" "Brara.C01870.1","No alias","Brassica rapa","adenylate kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.C02436.1","No alias","Brassica rapa","non-catalytic component *(Dpb2) of DNA polymerase epsilon complex","protein_coding" "Brara.C02615.1","No alias","Brassica rapa","G-class RAB GTPase","protein_coding" "Brara.C02829.1","No alias","Brassica rapa","component *(MCM7) of MCM replicative DNA helicase complex","protein_coding" "Brara.C04051.1","No alias","Brassica rapa","component *(MCM5) of MCM replicative DNA helicase complex","protein_coding" "Brara.C04147.1","No alias","Brassica rapa","component *(MCM4) of MCM replicative DNA helicase complex","protein_coding" "Brara.C04221.1","No alias","Brassica rapa","component *(RPA1) of single-stranded-DNA binding RPA complex & component *(RPA1) of RPA presynaptic filament assembly factor complex","protein_coding" "Brara.D00084.1","No alias","Brassica rapa","ARF-type transcription factor","protein_coding" "Brara.D00144.1","No alias","Brassica rapa","cofactor of post-CCT Tubulin folding pathway *(TFC-D)","protein_coding" "Brara.D00516.1","No alias","Brassica rapa","histone *(H2B)","protein_coding" "Brara.D01212.1","No alias","Brassica rapa","primase component *(POLA4) of DNA polymerase alpha complex","protein_coding" "Brara.D01536.1","No alias","Brassica rapa","hydroxyproline beta-1,4-arabinosyltransferase *(HPAT) & hydroxyproline-O-arabinosyltransferase *(HPAT)","protein_coding" "Brara.D01782.1","No alias","Brassica rapa","delta-12/delta-15 fatty acid desaturase","protein_coding" "Brara.D02165.1","No alias","Brassica rapa","serine carboxypeptidase & EC_3.4 hydrolase acting on peptide bond (peptidase)","protein_coding" "Brara.D02241.1","No alias","Brassica rapa","xyloglucan endotransglucosylase/hydrolase *(XTH) & EC_2.4 glycosyltransferase","protein_coding" "Brara.D02317.1","No alias","Brassica rapa","hydroxyalkyl alpha-pyrone synthase *(PKS) & EC_2.3 acyltransferase","protein_coding" "Brara.D02470.1","No alias","Brassica rapa","associated component *(ETG1) of MCM replicative DNA helicase complex","protein_coding" "Brara.E00300.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.E00326.1","No alias","Brassica rapa","RLCK-V receptor-like protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.E00338.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.E00383.1","No alias","Brassica rapa","group-I formin actin filament elongation factor","protein_coding" "Brara.E01156.1","No alias","Brassica rapa","component *(CAP-H) of condensin I complex","protein_coding" "Brara.E01242.1","No alias","Brassica rapa","bHLH-type transcription factor","protein_coding" "Brara.E01344.1","No alias","Brassica rapa","sliding clamp protein *(PCNA)","protein_coding" "Brara.E01685.1","No alias","Brassica rapa","alpha-Tubulin component *(TUA) of alpha-beta-Tubulin heterodimer","protein_coding" "Brara.E01856.1","No alias","Brassica rapa","DNA translocase component *(FANCM) of FANCM-MHF DNA remodeling complex","protein_coding" "Brara.E01911.1","No alias","Brassica rapa","component *(RACK1) of small ribosomal-subunit (SSU) proteome","protein_coding" "Brara.E02197.1","No alias","Brassica rapa","subunit alpha of CCT chaperonin folding complex *(CCT1)","protein_coding" "Brara.E02334.1","No alias","Brassica rapa","regulatory protein *(NCL) of rRNA transcription","protein_coding" "Brara.E02389.1","No alias","Brassica rapa","subunit delta *(CCT4) of CCT chaperonin folding complex","protein_coding" "Brara.E02452.1","No alias","Brassica rapa","nucleocytoplasmic transport karyopherin *(PLANTKAP)","protein_coding" "Brara.E02504.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.E02594.1","No alias","Brassica rapa","assembly factor involved in ITS1 rRNA removal *(BRIX1)","protein_coding" "Brara.E02631.1","No alias","Brassica rapa","protein involved in PS-II assembly *(HCF243/PAP90)","protein_coding" "Brara.E03197.1","No alias","Brassica rapa","group-I formin actin filament elongation factor","protein_coding" "Brara.E03225.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.E03315.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.E03571.1","No alias","Brassica rapa","component *(eS7) of small ribosomal-subunit (SSU) proteome","protein_coding" "Brara.F00115.1","No alias","Brassica rapa","UDP-L-rhamnose synthase *(RHM)","protein_coding" "Brara.F00449.1","No alias","Brassica rapa","PP7 phosphatase & EC_3.1 hydrolase acting on ester bond","protein_coding" "Brara.F00514.1","No alias","Brassica rapa","C2H2 subclass WIP transcription factor","protein_coding" "Brara.F00568.1","No alias","Brassica rapa","MAPK-kinase protein kinase *(NPK/ANP) & MAP3K-MEKK protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.F00611.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.F00763.1","No alias","Brassica rapa","DNA chromomethylase *(CMT)","protein_coding" "Brara.F00884.1","No alias","Brassica rapa","pyrophosphate-dependent phosphofructokinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.F00896.1","No alias","Brassica rapa","R-type SEC22-group component of SNARE longin membrane fusion complex","protein_coding" "Brara.F01176.1","No alias","Brassica rapa","component *(mS29) of small mitoribosomal-subunit proteome","protein_coding" "Brara.F01497.1","No alias","Brassica rapa","EC_2.7 transferase transferring phosphorus-containing group & pyrophosphate-dependent phosphofructokinase","protein_coding" "Brara.F01784.1","No alias","Brassica rapa","deoxyuridine triphosphatase *(DUT) & EC_3.6 hydrolase acting on acid anhydride","protein_coding" "Brara.F01985.1","No alias","Brassica rapa","microtubule-destabilizing kinesin *(NACK) & Kinesin-7-type motor protein","protein_coding" "Brara.F02824.1","No alias","Brassica rapa","LON-type protease","protein_coding" "Brara.F03113.1","No alias","Brassica rapa","component *(CAP-C/SMC4) of condensin I/II complex","protein_coding" "Brara.F03629.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.F03660.1","No alias","Brassica rapa","large subunit of ribonucleoside-diphosphate reductase heterodimer & EC_1.17 oxidoreductase acting on CH or CH2 group","protein_coding" "Brara.F03717.1","No alias","Brassica rapa","DNA polymerase eta *(POLH)","protein_coding" "Brara.F03728.1","No alias","Brassica rapa","component *(MCM6) of MCM replicative DNA helicase complex","protein_coding" "Brara.F03756.1","No alias","Brassica rapa","EC_2.1 transferase transferring one-carbon group","protein_coding" "Brara.G00116.1","No alias","Brassica rapa","protease *(SBT2)","protein_coding" "Brara.G00706.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.G01124.1","No alias","Brassica rapa","Kinesin-6-type motor protein","protein_coding" "Brara.G01195.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.G01198.1","No alias","Brassica rapa","catalytic component *(POLA1) of DNA polymerase alpha complex","protein_coding" "Brara.G01270.1","No alias","Brassica rapa","SRS-type transcription factor","protein_coding" "Brara.G01401.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.G01451.1","No alias","Brassica rapa","UDP-D-glucose 6-dehydrogenase & EC_1.1 oxidoreductase acting on CH-OH group of donor","protein_coding" "Brara.G01532.1","No alias","Brassica rapa","primase component *(POLA4) of DNA polymerase alpha complex","protein_coding" "Brara.G01559.1","No alias","Brassica rapa","AGC-VIII protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.G01572.1","No alias","Brassica rapa","pectate lyase & EC_4.2 carbon-oxygen lyase","protein_coding" "Brara.G01636.1","No alias","Brassica rapa","histone *(H2A)","protein_coding" "Brara.G01926.1","No alias","Brassica rapa","ER-tubule curvature-inducing protein *(Reticulon)","protein_coding" "Brara.G02014.1","No alias","Brassica rapa","regulatory helicase *(RTEL)","protein_coding" "Brara.G02217.1","No alias","Brassica rapa","GTPase effector *(RIP)","protein_coding" "Brara.G02580.1","No alias","Brassica rapa","primase component *(POLA3) of DNA polymerase alpha complex","protein_coding" "Brara.G02656.1","No alias","Brassica rapa","E3 ubiquitin ligase *(SINA)","protein_coding" "Brara.G02696.1","No alias","Brassica rapa","component *(DDR) of ISWI chromatin remodeling complex","protein_coding" "Brara.G03137.1","No alias","Brassica rapa","tRNA export karyopherin *(XPOT) & nucleocytoplasmic export karyopherin *(XPO3/XPOT)","protein_coding" "Brara.H00152.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.H00205.1","No alias","Brassica rapa","mannan synthesis accessory protein *(MSR)","protein_coding" "Brara.H00398.1","No alias","Brassica rapa","amino acid transporter *(LHT)","protein_coding" "Brara.H00686.1","No alias","Brassica rapa","1,2-beta-galactosyltransferase *(MUR3-like)","protein_coding" "Brara.H01358.1","No alias","Brassica rapa","beta-type-1 component *(PBA) of 26S proteasome","protein_coding" "Brara.H01488.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.H01535.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.H01642.1","No alias","Brassica rapa","phosphoserine aminotransferase & EC_2.6 transferase transferring nitrogenous group","protein_coding" "Brara.H02500.1","No alias","Brassica rapa","component *(bL20m) of large mitoribosomal-subunit proteome","protein_coding" "Brara.H02681.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.H02935.1","No alias","Brassica rapa","Ran-activation accessory protein *(RanBP1)","protein_coding" "Brara.I00118.1","No alias","Brassica rapa","glycerol-3-phosphate acyltransferase *(GPAT)","protein_coding" "Brara.I00125.1","No alias","Brassica rapa","component *(MCM7) of MCM replicative DNA helicase complex","protein_coding" "Brara.I00488.1","No alias","Brassica rapa","component *(EFOP) of phosphatidylinositol 4-kinase complex","protein_coding" "Brara.I00619.1","No alias","Brassica rapa","DNA bending architectural protein *(HMG-B)","protein_coding" "Brara.I00644.1","No alias","Brassica rapa","component *(RPA1) of single-stranded-DNA binding RPA complex & component *(RPA1) of RPA presynaptic filament assembly factor complex","protein_coding" "Brara.I00688.1","No alias","Brassica rapa","NAC-type transcription factor","protein_coding" "Brara.I00747.1","No alias","Brassica rapa","non-catalytic component *(RMI1) of RTR Holliday junction dissolution complex","protein_coding" "Brara.I00815.1","No alias","Brassica rapa","histone *(H3)","protein_coding" "Brara.I00886.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.I00925.1","No alias","Brassica rapa","prolyl hydroxylase","protein_coding" "Brara.I01216.1","No alias","Brassica rapa","component *(RFC2) of PCNA sliding clamp loader complex","protein_coding" "Brara.I01354.1","No alias","Brassica rapa","ER-tubule curvature-inducing protein *(Reticulon)","protein_coding" "Brara.I01380.1","No alias","Brassica rapa","SSU processome assembly factor *(IMP4)","protein_coding" "Brara.I01421.1","No alias","Brassica rapa","component *(Tim9) of inner mitochondrion membrane TIM22 insertion system","protein_coding" "Brara.I01839.1","No alias","Brassica rapa","component *(eIF3d) of eIF3 mRNA-to-PIC binding complex","protein_coding" "Brara.I01840.1","No alias","Brassica rapa","beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer","protein_coding" "Brara.I02248.1","No alias","Brassica rapa","component *(ORC1) of origin recognition complex","protein_coding" "Brara.I02808.1","No alias","Brassica rapa","HD-ZIP III-type transcription factor","protein_coding" "Brara.I03015.1","No alias","Brassica rapa","adenine phosphoribosyltransferase *(APT) & EC_2.4 glycosyltransferase","protein_coding" "Brara.I03112.1","No alias","Brassica rapa","RNA helicase *(Prp22)","protein_coding" "Brara.I03123.1","No alias","Brassica rapa","UDP-D-glucose 6-dehydrogenase & EC_1.1 oxidoreductase acting on CH-OH group of donor","protein_coding" "Brara.I03161.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.I03462.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.I03479.1","No alias","Brassica rapa","EC_1.10 oxidoreductase acting on diphenol or related substance as donor","protein_coding" "Brara.I03781.1","No alias","Brassica rapa","component *(uL23) of large ribosomal-subunit (LSU) proteome","protein_coding" "Brara.I04091.1","No alias","Brassica rapa","mitotic-specific Kleisin-type component *(SCC1) of cohesin regulator complex","protein_coding" "Brara.I04376.1","No alias","Brassica rapa","regulatory protein *(FLZ) of SnRK1 complex","protein_coding" "Brara.I04397.1","No alias","Brassica rapa","ERF-peptide receptor *(ER) & LRR-XIIIb protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.I04553.1","No alias","Brassica rapa","DNA methyltransferase *(MET)","protein_coding" "Brara.I05104.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.I05229.1","No alias","Brassica rapa","clathrin coated vesicle dynamin *(DRP2)","protein_coding" "Brara.I05375.1","No alias","Brassica rapa","Ran-activation accessory protein *(RanBP1)","protein_coding" "Brara.I05605.1","No alias","Brassica rapa","histone H3 variant *(CENH3)","protein_coding" "Brara.J00285.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J00584.1","No alias","Brassica rapa","component *(MCM2) of MCM replicative DNA helicase complex","protein_coding" "Brara.J00592.1","No alias","Brassica rapa","beta-galactosidase *(BGAL1) & EC_3.2 glycosylase","protein_coding" "Brara.J00650.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J01222.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J01452.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J01612.1","No alias","Brassica rapa","alpha-Tubulin component *(TUA) of alpha-beta-Tubulin heterodimer","protein_coding" "Brara.J01613.1","No alias","Brassica rapa","alpha-Tubulin component *(TUA) of alpha-beta-Tubulin heterodimer","protein_coding" "Brara.J01652.1","No alias","Brassica rapa","Ran-activating protein of nucleocytoplasmic transport","protein_coding" "Brara.J01919.1","No alias","Brassica rapa","component *(mS81) of small mitoribosomal-subunit proteome","protein_coding" "Brara.J02276.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J02414.1","No alias","Brassica rapa","pyruvate kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.J02529.1","No alias","Brassica rapa","component *(WDR8) of Katanin-recruiting microtubule-anchoring complex","protein_coding" "Brara.K00023.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.K00228.1","No alias","Brassica rapa","P4-type ATPase component *(ALA) of phospholipid flippase complex & active component *(ALA) of ALA-ALIS flippase complex & EC_3.6 hydrolase acting on acid anhydride","protein_coding" "Brara.K00306.1","No alias","Brassica rapa","EC_2.1 transferase transferring one-carbon group","protein_coding" "Brara.K00712.1","No alias","Brassica rapa","subunit G of V-type ATPase peripheral V1 subcomplex","protein_coding" "Brara.K01036.1","No alias","Brassica rapa","subunit gamma of co-translational insertion system Sec61 subcomplex","protein_coding" "Brara.K01237.1","No alias","Brassica rapa","component *(GRF) of GRF-GIF transcriptional complex","protein_coding" "Brara.K01859.1","No alias","Brassica rapa","Unknown function","protein_coding" "Cre01.g003463","No alias","Chlamydomonas reinhardtii","MUTS homolog 2","protein_coding" "Cre01.g009250","No alias","Chlamydomonas reinhardtii","topoisomerase II","protein_coding" "Cre01.g010816","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre01.g012100","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre01.g015250","No alias","Chlamydomonas reinhardtii","DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases","protein_coding" "Cre01.g017100","No alias","Chlamydomonas reinhardtii","Esterase/lipase/thioesterase family protein","protein_coding" "Cre01.g017450","No alias","Chlamydomonas reinhardtii","DNA polymerase alpha 2","protein_coding" "Cre01.g019150","No alias","Chlamydomonas reinhardtii","GAMMA-TUBULIN COMPLEX PROTEIN 4","protein_coding" "Cre01.g022000","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding" "Cre01.g022550","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre01.g029100","No alias","Chlamydomonas reinhardtii","PSF2","protein_coding" "Cre01.g034750","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre01.g036100","No alias","Chlamydomonas reinhardtii","Transducin/WD40 repeat-like superfamily protein","protein_coding" "Cre01.g055436","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre02.g094050","No alias","Chlamydomonas reinhardtii","Alkaline-phosphatase-like family protein","protein_coding" "Cre02.g095050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre02.g095294","No alias","Chlamydomonas reinhardtii","Zinc finger (C3HC4-type RING finger) family protein","protein_coding" "Cre02.g100000","No alias","Chlamydomonas reinhardtii","Replication protein A, subunit RPA32","protein_coding" "Cre02.g103350","No alias","Chlamydomonas reinhardtii","fatty acid amide hydrolase","protein_coding" "Cre02.g104951","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre02.g108050","No alias","Chlamydomonas reinhardtii","B-cell receptor-associated 31-like","protein_coding" "Cre02.g119800","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre02.g142186","No alias","Chlamydomonas reinhardtii","Tubulin/FtsZ family protein","protein_coding" "Cre02.g142366","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre03.g145687","No alias","Chlamydomonas reinhardtii","5\'-3\' exonuclease family protein","protein_coding" "Cre03.g158300","No alias","Chlamydomonas reinhardtii","Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain","protein_coding" "Cre03.g158550","No alias","Chlamydomonas reinhardtii","chromatin remodeling factor CHD3 (PICKLE)","protein_coding" "Cre03.g161050","No alias","Chlamydomonas reinhardtii","partner of SLD five 1","protein_coding" "Cre03.g163300","No alias","Chlamydomonas reinhardtii","homolog of yeast CDT1 B homolog of yeast CDT1 B","protein_coding" "Cre03.g163850","No alias","Chlamydomonas reinhardtii","Zinc finger (C3HC4-type RING finger) family protein","protein_coding" "Cre03.g178650","No alias","Chlamydomonas reinhardtii","minichromosome maintenance (MCM2/3/5) family protein","protein_coding" "Cre03.g178950","No alias","Chlamydomonas reinhardtii","RECQ helicase l1","protein_coding" "Cre03.g179961","No alias","Chlamydomonas reinhardtii","DNA polymerase epsilon catalytic subunit","protein_coding" "Cre03.g180050","No alias","Chlamydomonas reinhardtii","Transducin/WD40 repeat-like superfamily protein","protein_coding" "Cre03.g180350","No alias","Chlamydomonas reinhardtii","cyclin-dependent kinase-subunit 1","protein_coding" "Cre03.g184500","No alias","Chlamydomonas reinhardtii","Chaperone DnaJ-domain superfamily protein","protein_coding" "Cre03.g185350","No alias","Chlamydomonas reinhardtii","callose synthase 5","protein_coding" "Cre03.g191100","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre03.g193900","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre03.g197700","No alias","Chlamydomonas reinhardtii","trithorax-like protein 2","protein_coding" "Cre03.g199350","No alias","Chlamydomonas reinhardtii","chromatin remodeling factor18","protein_coding" "Cre03.g200900","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre03.g212417","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre04.g211700","No alias","Chlamydomonas reinhardtii","ARM repeat protein interacting with ABF2","protein_coding" "Cre04.g213050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre04.g214350","No alias","Chlamydomonas reinhardtii","DNA-directed DNA polymerases","protein_coding" "Cre04.g217944","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre04.g220950","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre04.g226001","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre04.g227000","No alias","Chlamydomonas reinhardtii","DNA mismatch repair protein, putative","protein_coding" "Cre04.g233102","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre05.g235750","No alias","Chlamydomonas reinhardtii","MUTS homolog 6","protein_coding" "Cre05.g239250","No alias","Chlamydomonas reinhardtii","Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein","protein_coding" "Cre05.g239800","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre05.g243900","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre05.g244450","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre06.g278161","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre06.g278199","No alias","Chlamydomonas reinhardtii","carotenoid cleavage dioxygenase 7","protein_coding" "Cre06.g280800","No alias","Chlamydomonas reinhardtii","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding" "Cre06.g281750","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre06.g281766","No alias","Chlamydomonas reinhardtii","Chaperone DnaJ-domain superfamily protein","protein_coding" "Cre06.g285650","No alias","Chlamydomonas reinhardtii","origin recognition complex protein 6","protein_coding" "Cre06.g293000","No alias","Chlamydomonas reinhardtii","DNA primase, large subunit family","protein_coding" "Cre06.g295700","No alias","Chlamydomonas reinhardtii","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding" "Cre06.g299250","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre06.g299300","No alias","Chlamydomonas reinhardtii","gamma-tubulin","protein_coding" "Cre06.g303536","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre07.g312350","No alias","Chlamydomonas reinhardtii","DNA primases;DNA primases","protein_coding" "Cre07.g314700","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre07.g316850","No alias","Chlamydomonas reinhardtii","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding" "Cre07.g323300","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre07.g325716","No alias","Chlamydomonas reinhardtii","DNA ligase 1","protein_coding" "Cre07.g334650","No alias","Chlamydomonas reinhardtii","breast cancer susceptibility1","protein_coding" "Cre07.g338000","No alias","Chlamydomonas reinhardtii","minichromosome maintenance (MCM2/3/5) family protein","protein_coding" "Cre07.g341700","No alias","Chlamydomonas reinhardtii","putative protein kinase 1","protein_coding" "Cre07.g351400","No alias","Chlamydomonas reinhardtii","minichromosome maintenance 10","protein_coding" "Cre07.g351450","No alias","Chlamydomonas reinhardtii","BUB1-related (BUB1: budding uninhibited by benzymidazol 1)","protein_coding" "Cre07.g355200","No alias","Chlamydomonas reinhardtii","origin recognition complex protein 5","protein_coding" "Cre08.g358100","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre08.g370000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre08.g376350","No alias","Chlamydomonas reinhardtii","ASF1 like histone chaperone","protein_coding" "Cre08.g381000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre09.g387615","No alias","Chlamydomonas reinhardtii","Zinc-finger domain of monoamine-oxidase A repressor R1","protein_coding" "Cre09.g389550","No alias","Chlamydomonas reinhardtii","Chaperone DnaJ-domain superfamily protein","protein_coding" "Cre09.g390150","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre09.g391000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre09.g393600","No alias","Chlamydomonas reinhardtii","DNA replication protein-related","protein_coding" "Cre09.g396957","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre09.g409000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre09.g409850","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre09.g412400","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre10.g426850","No alias","Chlamydomonas reinhardtii","HXXXD-type acyl-transferase family protein","protein_coding" "Cre10.g440200","No alias","Chlamydomonas reinhardtii","structural maintenance of chromosomes 5","protein_coding" "Cre10.g440800","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre10.g441250","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre10.g441700","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre10.g442500","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre10.g452300","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre10.g455600","No alias","Chlamydomonas reinhardtii","origin recognition complex 1","protein_coding" "Cre10.g455850","No alias","Chlamydomonas reinhardtii","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding" "Cre10.g460000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre10.g461750","No alias","Chlamydomonas reinhardtii","methyltransferase 1","protein_coding" "Cre11.g467637","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre11.g467745","No alias","Chlamydomonas reinhardtii","spindle pole body component 98","protein_coding" "Cre11.g481082","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre11.g482700","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre11.g483351","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre12.g488500","No alias","Chlamydomonas reinhardtii","Chaperone DnaJ-domain superfamily protein","protein_coding" "Cre12.g490150","No alias","Chlamydomonas reinhardtii","RECQ helicase SIM","protein_coding" "Cre12.g497650","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre12.g512450","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre12.g512500","No alias","Chlamydomonas reinhardtii","zinc knuckle (CCHC-type) family protein","protein_coding" "Cre12.g515850","No alias","Chlamydomonas reinhardtii","proliferating cellular nuclear antigen 1","protein_coding" "Cre12.g525500","No alias","Chlamydomonas reinhardtii","Spc97 / Spc98 family of spindle pole body (SBP) component","protein_coding" "Cre12.g540927","No alias","Chlamydomonas reinhardtii","minichromosome maintenance 9","protein_coding" "Cre12.g556653","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre13.g561900","No alias","Chlamydomonas reinhardtii","Polynucleotidyl transferase, ribonuclease H-like superfamily protein","protein_coding" "Cre13.g565150","No alias","Chlamydomonas reinhardtii","Transducin/WD40 repeat-like superfamily protein","protein_coding" "Cre13.g584901","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre14.g620050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre16.g651000","No alias","Chlamydomonas reinhardtii","Replication factor-A protein 1-related","protein_coding" "Cre16.g652950","No alias","Chlamydomonas reinhardtii","transducin family protein / WD-40 repeat family protein","protein_coding" "Cre16.g658600","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre16.g664100","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre16.g664301","No alias","Chlamydomonas reinhardtii","helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding","protein_coding" "Cre16.g667850","No alias","Chlamydomonas reinhardtii","DUTP-PYROPHOSPHATASE-LIKE 1","protein_coding" "Cre16.g667900","No alias","Chlamydomonas reinhardtii","AINTEGUMENTA-like 5","protein_coding" "Cre16.g672300","No alias","Chlamydomonas reinhardtii","HMG (high mobility group) box protein","protein_coding" "Cre16.g672500","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre16.g676100","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre16.g678650","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre16.g679950","No alias","Chlamydomonas reinhardtii","ATPase family associated with various cellular activities (AAA)","protein_coding" "Cre16.g694800","No alias","Chlamydomonas reinhardtii","Arabidopsis thaliana protein of unknown function (DUF821)","protein_coding" "Cre17.g701350","No alias","Chlamydomonas reinhardtii","Polynucleotidyl transferase, ribonuclease H-like superfamily protein","protein_coding" "Cre17.g711600","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre17.g712450","No alias","Chlamydomonas reinhardtii","Domain of unknown function (DUF1767)","protein_coding" "Cre17.g718400","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre17.g724900","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre17.g725900","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre17.g726500","No alias","Chlamydomonas reinhardtii","origin recognition complex subunit 4","protein_coding" "Cre17.g732566","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre17.g732600","No alias","Chlamydomonas reinhardtii","glyoxal oxidase-related protein","protein_coding" "Cre17.g741200","No alias","Chlamydomonas reinhardtii","microtubule end binding protein EB1A","protein_coding" "Cre17.g746347","No alias","Chlamydomonas reinhardtii","uracil dna glycosylase","protein_coding" "evm.model.contig_2042.4","No alias","Porphyridium purpureum","(at1g44900 : 727.0) Encodes MCM2 (MINICHROMOSOME MAINTENANCE 2), a protein essential to embryo development. Overexpression results in altered root meristem function.; MINICHROMOSOME MAINTENANCE 2 (MCM2); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: nuclear chromatin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 2 (InterPro:IPR008045), MCM protein 2, N-terminal (InterPro:IPR021092); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1). & (q43704|mcm3_maize : 303.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1454.0) & (original description: no original description)","protein_coding" "evm.model.contig_2048.10","No alias","Porphyridium purpureum","(at3g23580 : 461.0) Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes (RNR2A). Functionally redundant with the ribonucleotide reductase TSO2. mRNA was shown to specifically accumulate during the S-phase of the cell cycle in synchronized tobacco BY2 cells. Critical for cell cycle progression, DNA damage repair and plant development.; ribonucleotide reductase 2A (RNR2A); CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ribonucleotide reductase (InterPro:IPR000358), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: Ferritin/ribonucleotide reductase-like family protein (TAIR:AT3G27060.1); Has 9602 Blast hits to 9597 proteins in 2376 species: Archae - 34; Bacteria - 4358; Metazoa - 261; Fungi - 240; Plants - 185; Viruses - 729; Other Eukaryotes - 3795 (source: NCBI BLink). & (p49730|rir2_tobac : 453.0) Ribonucleoside-diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide reductase small subunit) (Ribonucleoside-diphosphate reductase R2 subunit) - Nicotiana tabacum (Common tobacco) & (reliability: 922.0) & (original description: no original description)","protein_coding" "evm.model.contig_2063.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2082.11","No alias","Porphyridium purpureum","(p21343|pfpb_soltu : 86.7) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) - Solanum tuberosum (Potato) & (at4g04040 : 85.1) maternal effect embryo arrest 51 (MEE51); CONTAINS InterPro DOMAIN/s: Pyrophosphate-dependent phosphofructokinase PfpB (InterPro:IPR011183), Phosphofructokinase (InterPro:IPR000023); BEST Arabidopsis thaliana protein match is: Phosphofructokinase family protein (TAIR:AT1G12000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 170.2) & (original description: no original description)","protein_coding" "evm.model.contig_2084.13","No alias","Porphyridium purpureum","(o48653|dpola_orysa : 558.0) DNA polymerase alpha catalytic subunit (EC 2.7.7.7) - Oryza sativa (Rice) & (at5g67100 : 531.0) Encodes the putative catalytic subunit of the DNA polymerase alpha. Interacts with genes involved in chromatin-mediated cellular memory. ICU2 genetically interacts with TERMINAL FLOWER2, the ortholog of HETEROCHROMATIN PROTEIN1 of animals and yeasts, and with the Polycomb group (PcG) gene CURLY LEAF. A number of regulatory genes were derepressed in the icu2-1 mutant, including genes associated with flowering time, floral meristem, and floral organ identity. Mutant has curled, involute leaves and causes early flowering.; INCURVATA2 (ICU2); FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: negative regulation of flower development, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134), Zinc finger, DNA-directed DNA polymerase, family B, alpha (InterPro:IPR015088), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, pol2 (InterPro:IPR004578); BEST Arabidopsis thaliana protein match is: DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (TAIR:AT5G63960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1062.0) & (original description: no original description)","protein_coding" "evm.model.contig_2085.14","No alias","Porphyridium purpureum","(q9m7j4|mfp1_tobac : 97.4) MAR-binding filament-like protein 1-1 - Nicotiana tabacum (Common tobacco) & (at4g21270 : 96.7) Encodes a kinesin-like motor protein heavy chain. Loss of function mutations have reduced fertility and are defective in spindle formation in male meiosis.; kinesin 1 (ATK1); CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin 5 (TAIR:AT4G05190.1); Has 113981 Blast hits to 63024 proteins in 3025 species: Archae - 1256; Bacteria - 16796; Metazoa - 54341; Fungi - 9779; Plants - 6646; Viruses - 430; Other Eukaryotes - 24733 (source: NCBI BLink). & (reliability: 178.8) & (original description: no original description)","protein_coding" "evm.model.contig_2088.4","No alias","Porphyridium purpureum","(at4g31790 : 296.0) Tetrapyrrole (Corrin/Porphyrin) Methylases; FUNCTIONS IN: methyltransferase activity, diphthine synthase activity; INVOLVED IN: peptidyl-diphthamide biosynthetic process from peptidyl-histidine, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diphthine synthase (InterPro:IPR004551), Tetrapyrrole methylase (InterPro:IPR000878), Tetrapyrrole methylase, subdomain 1 (InterPro:IPR014777), Tetrapyrrole methylase, subdomain 2 (InterPro:IPR014776); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 592.0) & (original description: no original description)","protein_coding" "evm.model.contig_2089.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2090.10","No alias","Porphyridium purpureum","(at3g45850 : 421.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G28620.1). & (o23826|k125_tobac : 421.0) 125 kDa kinesin-related protein - Nicotiana tabacum (Common tobacco) & (reliability: 842.0) & (original description: no original description)","protein_coding" "evm.model.contig_2090.32","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2100.8","No alias","Porphyridium purpureum","(at5g22110 : 178.0) Encodes a protein with similarity to DNA polymerase epsilon subunit B an essential gene that is required for DNA replication. Homozygous mutants are embryo lethal. Expressed in meristematic , rapidly dividing regions.; DNA polymerase epsilon subunit B2 (DPB2); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding; INVOLVED IN: DNA replication, DNA-dependent DNA replication; LOCATED IN: epsilon DNA polymerase complex, nucleus; EXPRESSED IN: embryo, male gametophyte, apical meristem, female gametophyte; CONTAINS InterPro DOMAIN/s: DNA polymerase epsilon, subunit B (InterPro:IPR016266), DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 412 Blast hits to 394 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 144; Plants - 62; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink). & (reliability: 356.0) & (original description: no original description)","protein_coding" "evm.model.contig_2102.12","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2104.15","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2112.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2114.1","No alias","Porphyridium purpureum","(at3g25580 : 111.0) Thioredoxin superfamily protein; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin domain-containing protein 9 homolog (TAIR:AT2G18990.1); Has 1084 Blast hits to 1084 proteins in 275 species: Archae - 18; Bacteria - 74; Metazoa - 392; Fungi - 176; Plants - 221; Viruses - 0; Other Eukaryotes - 203 (source: NCBI BLink). & (reliability: 222.0) & (original description: no original description)","protein_coding" "evm.model.contig_2121.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2122.18","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2126.13","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2126.7","No alias","Porphyridium purpureum","(at5g12470 : 136.0) Protein of unknown function (DUF3411); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF399 and DUF3411) (TAIR:AT2G40400.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 260.0) & (original description: no original description)","protein_coding" "evm.model.contig_2146.14","No alias","Porphyridium purpureum","(at1g19880 : 171.0) Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1); Has 17859 Blast hits to 6314 proteins in 497 species: Archae - 78; Bacteria - 2347; Metazoa - 6181; Fungi - 1100; Plants - 2708; Viruses - 16; Other Eukaryotes - 5429 (source: NCBI BLink). & (reliability: 342.0) & (original description: no original description)","protein_coding" "evm.model.contig_2149.20","No alias","Porphyridium purpureum","(at5g46280 : 571.0) MINICHROMOSOME MAINTENANCE 3 (MCM3); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 3 (InterPro:IPR008046); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT4G02060.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q43704|mcm3_maize : 491.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1142.0) & (original description: no original description)","protein_coding" "evm.model.contig_2169.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2244.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2255.5","No alias","Porphyridium purpureum","(at5g02820 : 500.0) Involved in the patterning and shape of leaf trichomes. Encodes the DNA topoisomerase VI SPO11-3, involved in endoreduplication; ROOT HAIRLESS 2 (RHL2); CONTAINS InterPro DOMAIN/s: Spo11/DNA topoisomerase VI, subunit A, N-terminal (InterPro:IPR013049), DNA topoisomerase VI, subunit A (InterPro:IPR004085), Spo11/DNA topoisomerase VI, subunit A (InterPro:IPR002815); BEST Arabidopsis thaliana protein match is: Spo11/DNA topoisomerase VI, subunit A protein (TAIR:AT3G13170.1); Has 936 Blast hits to 932 proteins in 314 species: Archae - 223; Bacteria - 16; Metazoa - 170; Fungi - 119; Plants - 152; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink). & (reliability: 1000.0) & (original description: no original description)","protein_coding" "evm.model.contig_2279.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2287.6","No alias","Porphyridium purpureum","(at2g27170 : 345.0) Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment.; TITAN7 (TTN7); FUNCTIONS IN: ATP binding; INVOLVED IN: sister chromatid cohesion, chromosome segregation; LOCATED IN: cohesin complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 2 (TAIR:AT5G62410.1); Has 158776 Blast hits to 77347 proteins in 3496 species: Archae - 2059; Bacteria - 28403; Metazoa - 67946; Fungi - 11949; Plants - 6773; Viruses - 706; Other Eukaryotes - 40940 (source: NCBI BLink). & (reliability: 690.0) & (original description: no original description)","protein_coding" "evm.model.contig_2305.2","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding" "evm.model.contig_2306.4","No alias","Porphyridium purpureum","(at3g54630 : 120.0) CONTAINS InterPro DOMAIN/s: Kinetochore protein Ndc80 (InterPro:IPR005550); Has 24780 Blast hits to 15608 proteins in 1321 species: Archae - 545; Bacteria - 2969; Metazoa - 12597; Fungi - 2181; Plants - 1581; Viruses - 39; Other Eukaryotes - 4868 (source: NCBI BLink). & (reliability: 240.0) & (original description: no original description)","protein_coding" "evm.model.contig_2348.7","No alias","Porphyridium purpureum","(at3g12530 : 99.4) PSF2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GINS complex (InterPro:IPR021151), GINS complex, subunit Psf2 (InterPro:IPR007257), GINS complex, subunit Psf2, subgroup (InterPro:IPR016906); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 198.8) & (original description: no original description)","protein_coding" "evm.model.contig_2349.8","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2452.2","No alias","Porphyridium purpureum","(at1g20930 : 332.0) Cyclin-dependent kinase, expressed in flowers and suspension cell culture, expression peaks during M phase in synchronized cultures. Required for proper organization of the shoot apical meristem and for hormone signaling. Expressed in the shoot apical meristem. Involved in regulation of the G2/M transition of the mitotic cell cycle.; cyclin-dependent kinase B2;2 (CDKB2;2); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase B2;1 (TAIR:AT1G76540.1); Has 109034 Blast hits to 107606 proteins in 3051 species: Archae - 93; Bacteria - 11427; Metazoa - 41458; Fungi - 12141; Plants - 24398; Viruses - 437; Other Eukaryotes - 19080 (source: NCBI BLink). & (q38774|cdc2c_antma : 326.0) Cell division control protein 2 homolog C (EC 2.7.11.22) (EC 2.7.11.23) - Antirrhinum majus (Garden snapdragon) & (reliability: 664.0) & (original description: no original description)","protein_coding" "evm.model.contig_2494.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2500.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2500.3","No alias","Porphyridium purpureum","(at3g12170 : 120.0) Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: J-domain protein 6 (TAIR:AT5G06910.1); Has 23895 Blast hits to 23888 proteins in 3317 species: Archae - 171; Bacteria - 9423; Metazoa - 4258; Fungi - 2263; Plants - 2420; Viruses - 67; Other Eukaryotes - 5293 (source: NCBI BLink). & (reliability: 240.0) & (original description: no original description)","protein_coding" "evm.model.contig_2501.4","No alias","Porphyridium purpureum","(at5g61000 : 172.0) RPA70D; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: DNA replication; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Replication factor-a protein 1 Rpa1 (InterPro:IPR004591), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication factor A, C-terminal (InterPro:IPR013955), Replication factor-A protein 1, N-terminal (InterPro:IPR007199); BEST Arabidopsis thaliana protein match is: RPA70-kDa subunit B (TAIR:AT5G08020.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 344.0) & (original description: no original description)","protein_coding" "evm.model.contig_2714.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3392.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3392.8","No alias","Porphyridium purpureum","(at2g21060 : 96.3) glycine-rich protein (AtGRP2b); glycine-rich protein 2B (GRP2B); FUNCTIONS IN: DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Cold-shock conserved site (InterPro:IPR019844), Zinc finger, CCHC retroviral-type (InterPro:IPR013084), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Cold shock protein (InterPro:IPR011129), Zinc finger, CCHC-type (InterPro:IPR001878), Cold-shock protein, DNA-binding (InterPro:IPR002059); BEST Arabidopsis thaliana protein match is: glycine rich protein 2 (TAIR:AT4G38680.1); Has 124576 Blast hits to 52040 proteins in 3306 species: Archae - 178; Bacteria - 46955; Metazoa - 35565; Fungi - 6939; Plants - 11254; Viruses - 1676; Other Eukaryotes - 22009 (source: NCBI BLink). & (p27484|grp2_nicsy : 92.8) Glycine-rich protein 2 - Nicotiana sylvestris (Wood tobacco) & (reliability: 185.6) & (original description: no original description)","protein_coding" "evm.model.contig_3397.17","No alias","Porphyridium purpureum","(at1g04730 : 120.0) Necessary for sister chromatid cohesion. Acts in synergy with ETG1.; CHROMOSOME TRANSMISSION FIDELITY 18 (CTF18); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: sister chromatid cohesion; LOCATED IN: replication fork; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: replication factor C1 (TAIR:AT5G22010.1); Has 4018 Blast hits to 4006 proteins in 709 species: Archae - 400; Bacteria - 666; Metazoa - 673; Fungi - 766; Plants - 379; Viruses - 21; Other Eukaryotes - 1113 (source: NCBI BLink). & (reliability: 240.0) & (original description: no original description)","protein_coding" "evm.model.contig_3407.6","No alias","Porphyridium purpureum","(at5g07590 : 177.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 672 Blast hits to 646 proteins in 166 species: Archae - 0; Bacteria - 97; Metazoa - 271; Fungi - 156; Plants - 85; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink). & (reliability: 354.0) & (original description: no original description)","protein_coding" "evm.model.contig_3416.15","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3416.16","No alias","Porphyridium purpureum","(at3g24515 : 142.0) ubiquitin-conjugating enzyme 37 (UBC37); FUNCTIONS IN: ubiquitin-protein ligase activity, small conjugating protein ligase activity; INVOLVED IN: regulation of protein metabolic process, post-translational protein modification; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 11 (TAIR:AT3G08690.2); Has 10163 Blast hits to 10152 proteins in 398 species: Archae - 0; Bacteria - 2; Metazoa - 4605; Fungi - 2137; Plants - 1818; Viruses - 27; Other Eukaryotes - 1574 (source: NCBI BLink). & (p25866|ubc2_wheat : 90.5) Ubiquitin-conjugating enzyme E2-17 kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) - Triticum aestivum (Wheat) & (reliability: 284.0) & (original description: no original description)","protein_coding" "evm.model.contig_3420.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3436.5","No alias","Porphyridium purpureum","(at3g18524 : 456.0) Encodes a DNA mismatch repair homolog of human MutS gene, MSH6. MSH2 is involved in maintaining genome stability and repressing recombination of mismatched heteroduplexes.There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2 has different binding specificity to different mismatches in combination with MSH3, MSH6, or MSH7.; MUTS homolog 2 (MSH2); FUNCTIONS IN: damaged DNA binding, protein binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, negative regulation of reciprocal meiotic recombination; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein, MSH2 (InterPro:IPR011184); BEST Arabidopsis thaliana protein match is: homolog of DNA mismatch repair protein MSH3 (TAIR:AT4G25540.1); Has 13560 Blast hits to 13453 proteins in 2654 species: Archae - 128; Bacteria - 8942; Metazoa - 734; Fungi - 813; Plants - 457; Viruses - 3; Other Eukaryotes - 2483 (source: NCBI BLink). & (q9xgc9|msh2_maize : 412.0) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 912.0) & (original description: no original description)","protein_coding" "evm.model.contig_3440.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3440.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3450.30","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3456.8","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3463.4","No alias","Porphyridium purpureum","(at5g22220 : 120.0) Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway. Binds DPA and RBR1 proteins. Expressed throughout the cell cycle. Abundance increased by auxin through stabilization of the protein. Elevates CDK levels and activity, even under hormone-free conditions. Promotes cell division and shortens cell doubling time, inhibits cell growth. Transgenic plants overexpressing AtE2Fa contained an increased level of AtE2Fb transcripts that is paralleled by an increase in the amount of the AtE2Fb protein, suggesting that AtE2Fb expression might actually be up-regulated by the AtE2Fa transcription factor.; E2F transcription factor 1 (E2F1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: E2F transcription factor 3 (TAIR:AT2G36010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 240.0) & (original description: no original description)","protein_coding" "evm.model.contig_3467.7","No alias","Porphyridium purpureum","(at1g67630 : 101.0) DNA polymerase alpha 2 (POLA2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase alpha, subunit B N-terminal (InterPro:IPR013627), DNA polymerase alpha, subunit B (InterPro:IPR016722), DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 415 Blast hits to 412 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 140; Plants - 46; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). & (reliability: 202.0) & (original description: no original description)","protein_coding" "evm.model.contig_3475.3","No alias","Porphyridium purpureum","(q00268|pcna1_dauca : 227.0) Proliferating cell nuclear antigen (PCNA) (Cyclin) - Daucus carota (Carrot) & (at1g07370 : 226.0) Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation.; proliferating cellular nuclear antigen 1 (PCNA1); CONTAINS InterPro DOMAIN/s: Proliferating cell nuclear antigen, PCNA (InterPro:IPR000730), Proliferating cell nuclear antigen, PCNA, C-terminal (InterPro:IPR022649), Proliferating cell nuclear antigen, PCNA, conserved site (InterPro:IPR022659), Proliferating cell nuclear antigen, PCNA, N-terminal (InterPro:IPR022648); BEST Arabidopsis thaliana protein match is: proliferating cell nuclear antigen 2 (TAIR:AT2G29570.1); Has 1857 Blast hits to 1845 proteins in 456 species: Archae - 391; Bacteria - 0; Metazoa - 315; Fungi - 169; Plants - 159; Viruses - 71; Other Eukaryotes - 752 (source: NCBI BLink). & (reliability: 452.0) & (original description: no original description)","protein_coding" "evm.model.contig_3488.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3494.10","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3498.4","No alias","Porphyridium purpureum","(at5g33320 : 260.0) Encodes a plastid inner envelope protein PPT (phosphoenolpyruvate/phosphate translocator) that catalyzes the transport of phosphoenolpyruvate and phosphate across the inner envelope membrane of plastids.; CAB UNDEREXPRESSED 1 (CUE1); FUNCTIONS IN: antiporter activity; INVOLVED IN: transport; LOCATED IN: mitochondrion, chloroplast, plastid, plastid inner membrane, chloroplast envelope; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620), Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696), Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate (pep)/phosphate translocator 2 (TAIR:AT3G01550.1); Has 2791 Blast hits to 2789 proteins in 409 species: Archae - 9; Bacteria - 295; Metazoa - 571; Fungi - 421; Plants - 1194; Viruses - 0; Other Eukaryotes - 301 (source: NCBI BLink). & (p21727|tpt_pea : 199.0) Triose phosphate/phosphate translocator, chloroplast precursor (cTPT) (p36) (E30) - Pisum sativum (Garden pea) & (reliability: 520.0) & (original description: no original description)","protein_coding" "evm.model.contig_3537.4","No alias","Porphyridium purpureum","(at2g07690 : 633.0) Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.; MINICHROMOSOME MAINTENANCE 5 (MCM5); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin, nucleus, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 5 (InterPro:IPR008048); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1). & (q43704|mcm3_maize : 282.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1266.0) & (original description: no original description)","protein_coding" "evm.model.contig_3572.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3646.5","No alias","Porphyridium purpureum","(at1g21690 : 280.0) embryo defective 1968 (EMB1968); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), Replication factor C (InterPro:IPR013748); BEST Arabidopsis thaliana protein match is: replication factor C 2 (TAIR:AT1G63160.1). & (gnl|cdd|68872 : 87.0) no description available & (reliability: 560.0) & (original description: no original description)","protein_coding" "evm.model.contig_3663.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3692.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3692.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3693.5","No alias","Porphyridium purpureum","(at5g41880 : 265.0) POLA3; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer, DNA replication; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, small subunit (InterPro:IPR002755), DNA primase, small subunit, eukaryotic/archaeal (InterPro:IPR014052); Has 510 Blast hits to 504 proteins in 249 species: Archae - 95; Bacteria - 0; Metazoa - 124; Fungi - 138; Plants - 44; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink). & (reliability: 530.0) & (original description: no original description)","protein_coding" "evm.model.contig_3702.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_429.9","No alias","Porphyridium purpureum","(at5g44635 : 608.0) MINICHROMOSOME MAINTENANCE 6 (MCM6); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: shoot apex; EXPRESSED DURING: IL.00 inflorescence just visible; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 6 (InterPro:IPR008049); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q43704|mcm3_maize : 262.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1216.0) & (original description: no original description)","protein_coding" "evm.model.contig_431.11","No alias","Porphyridium purpureum","(at1g77720 : 275.0) Encodes a predicted protein kinase based on sequence similarity.; putative protein kinase 1 (PPK1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: MAPK/ERK kinase kinase 3 (TAIR:AT4G08470.1); Has 102737 Blast hits to 99628 proteins in 3502 species: Archae - 97; Bacteria - 12996; Metazoa - 35733; Fungi - 11774; Plants - 22485; Viruses - 236; Other Eukaryotes - 19416 (source: NCBI BLink). & (p23111|cdc2_maize : 100.0) Cell division control protein 2 homolog (EC 2.7.11.22) (EC 2.7.11.23) (p34cdc2) - Zea mays (Maize) & (reliability: 550.0) & (original description: no original description)","protein_coding" "evm.model.contig_431.14","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_433.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4400.17","No alias","Porphyridium purpureum","(at1g77470 : 290.0) Encodes a protein with high homology to the Replication Factor C, Subunit 3 (RFC3) of yeast and other eukaryotes. rfc3 mutants are hypersensitive to salicylic acid and exhibit enhanced induction of PR genes and resistance against virulent oomycete Hyaloperonospora arabidopsidis Noco2. The enhanced pathogen resistance in the mutant is NPR1-independent.; replication factor C subunit 3 (RFC3); FUNCTIONS IN: in 6 functions; INVOLVED IN: negative regulation of defense response; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA) (TAIR:AT1G21690.1); Has 17584 Blast hits to 17541 proteins in 2810 species: Archae - 637; Bacteria - 9895; Metazoa - 902; Fungi - 991; Plants - 392; Viruses - 88; Other Eukaryotes - 4679 (source: NCBI BLink). & (reliability: 580.0) & (original description: no original description)","protein_coding" "evm.model.contig_4407.6","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding" "evm.model.contig_4408.4","No alias","Porphyridium purpureum","(at2g26060 : 174.0) embryo defective 1345 (emb1345); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G32990.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 348.0) & (original description: no original description)","protein_coding" "evm.model.contig_4408.5","No alias","Porphyridium purpureum","(q9xfh3|mad2_maize : 179.0) Mitotic spindle checkpoint protein MAD2 - Zea mays (Maize) & (at3g25980 : 176.0) Encodes MAD2 (MITOTIC ARREST-DEFICIENT 2). May have the spindle assembly checkpoint protein functions conserved from yeast to humans.; MITOTIC ARREST-DEFICIENT 2 (MAD2); CONTAINS InterPro DOMAIN/s: DNA-binding HORMA (InterPro:IPR003511). & (reliability: 352.0) & (original description: no original description)","protein_coding" "evm.model.contig_4416.17","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4416.18","No alias","Porphyridium purpureum","(at2g37420 : 117.0) ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G45850.2); Has 44433 Blast hits to 32365 proteins in 1868 species: Archae - 445; Bacteria - 6202; Metazoa - 19487; Fungi - 4140; Plants - 3247; Viruses - 113; Other Eukaryotes - 10799 (source: NCBI BLink). & (o23826|k125_tobac : 89.7) 125 kDa kinesin-related protein - Nicotiana tabacum (Common tobacco) & (reliability: 234.0) & (original description: no original description)","protein_coding" "evm.model.contig_4416.9","No alias","Porphyridium purpureum","(at1g67320 : 211.0) DNA primase, large subunit family; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, large subunit, eukaryotic (InterPro:IPR016558), DNA primase, large subunit, eukaryotic/archaeal (InterPro:IPR007238). & (reliability: 422.0) & (original description: no original description)","protein_coding" "evm.model.contig_4419.5","No alias","Porphyridium purpureum","(at5g37630 : 91.3) EMBRYO DEFECTIVE 2656 (EMB2656); FUNCTIONS IN: binding; INVOLVED IN: mitotic chromosome condensation, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 333 Blast hits to 316 proteins in 147 species: Archae - 0; Bacteria - 4; Metazoa - 113; Fungi - 138; Plants - 47; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). & (reliability: 182.6) & (original description: no original description)","protein_coding" "evm.model.contig_4420.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4440.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4443.19","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4450.7","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4458.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4458.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4463.1","No alias","Porphyridium purpureum","(at3g02360 : 590.0) 6-phosphogluconate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to salt stress; LOCATED IN: peroxisome; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), 6-phosphogluconate dehydrogenase, decarboxylating (InterPro:IPR006113), 6-phosphogluconate dehydrogenase, C-terminal (InterPro:IPR006114), 6-phosphogluconate dehydrogenase (InterPro:IPR006183), NAD(P)-binding domain (InterPro:IPR016040), Fibritin/6-phosphogluconate dehydrogenase, C-terminal extension (InterPro:IPR012284); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT5G41670.2); Has 12208 Blast hits to 12120 proteins in 2600 species: Archae - 108; Bacteria - 8004; Metazoa - 655; Fungi - 226; Plants - 316; Viruses - 4; Other Eukaryotes - 2895 (source: NCBI BLink). & (reliability: 1180.0) & (original description: no original description)","protein_coding" "evm.model.contig_4467.12","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4468.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4477.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4491.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4495.7","No alias","Porphyridium purpureum","(at3g27640 : 142.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 36714 Blast hits to 22017 proteins in 645 species: Archae - 42; Bacteria - 5151; Metazoa - 14249; Fungi - 8186; Plants - 4562; Viruses - 0; Other Eukaryotes - 4524 (source: NCBI BLink). & (reliability: 284.0) & (original description: no original description)","protein_coding" "evm.model.contig_450.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4594.3","No alias","Porphyridium purpureum","(at1g01290 : 113.0) COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli MoaC. Expression is low in all tissues examined, except in roots. Appears to have targeting signals for chloroplast or mitochondria; cofactor of nitrate reductase and xanthine dehydrogenase 3 (CNX3); CONTAINS InterPro DOMAIN/s: Molybdopterin cofactor biosynthesis C (MoaC) domain (InterPro:IPR002820); Has 5242 Blast hits to 5240 proteins in 1916 species: Archae - 213; Bacteria - 3669; Metazoa - 104; Fungi - 75; Plants - 45; Viruses - 0; Other Eukaryotes - 1136 (source: NCBI BLink). & (reliability: 226.0) & (original description: no original description)","protein_coding" "evm.model.contig_462.15","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_479.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_490.1","No alias","Porphyridium purpureum","(at4g02060 : 555.0) Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.; PROLIFERA (PRL); CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 7 (InterPro:IPR008050); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT5G44635.1). & (q43704|mcm3_maize : 239.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1110.0) & (original description: no original description)","protein_coding" "evm.model.contig_493.10","No alias","Porphyridium purpureum","(at2g16440 : 599.0) MINICHROMOSOME MAINTENANCE 4 (MCM4); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 4 (InterPro:IPR008047); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT5G44635.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q43704|mcm3_maize : 278.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1198.0) & (original description: no original description)","protein_coding" "evm.model.contig_494.1","No alias","Porphyridium purpureum","(at2g26980 : 238.0) encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers.; CBL-interacting protein kinase 3 (CIPK3); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: Ca2+regulated serine-threonine protein kinase family protein (TAIR:AT5G21326.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 234.0) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 476.0) & (original description: no original description)","protein_coding" "evm.model.contig_498.7","No alias","Porphyridium purpureum","(at3g18630 : 219.0) Encodes a uracil-DNA glycosylase (UDG) involved in a base excision DNA repair pathway in mitochondria.; uracil dna glycosylase (UNG); FUNCTIONS IN: uracil DNA N-glycosylase activity; INVOLVED IN: DNA repair, base-excision repair; LOCATED IN: mitochondrion; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Uracil-DNA glycosylase (InterPro:IPR002043), Uracil-DNA glycosylase-like (InterPro:IPR005122); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G10550.1); Has 5606 Blast hits to 5606 proteins in 2219 species: Archae - 2; Bacteria - 4117; Metazoa - 124; Fungi - 141; Plants - 47; Viruses - 234; Other Eukaryotes - 941 (source: NCBI BLink). & (reliability: 438.0) & (original description: no original description)","protein_coding" "evm.model.contig_510.3","No alias","Porphyridium purpureum","(at3g44530 : 196.0) Encodes a nuclear localized WD-repeat containing protein involved in negative regulation of knox gene expression via epigenetic mechanism of chromatin re-organization. Interacts physically and genetically with AS1. Expressed in meristem and leaf primordia. Homozygous mutants are embryo lethal. Phenotype of cosuppressed lines is variable but show effects on leaf development similar to as1/as2.; homolog of histone chaperone HIRA (HIRA); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), TUP1-like enhancer of split (InterPro:IPR011494), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G64630.2). & (reliability: 392.0) & (original description: no original description)","protein_coding" "evm.model.contig_522.19","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_537.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_539.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_559.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_567.4","No alias","Porphyridium purpureum","(at2g40550 : 167.0) Encodes a nuclear localized target of E2Fa-DPa, transcription factors controlling cell cycle progression. Required for sister chromatid cohesion and DNA repair.; E2F target gene 1 (ETG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: sister chromatid cohesion, postreplication repair, DNA replication; LOCATED IN: nuclear replisome, nucleus, chloroplast envelope, MCM complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2044, membrane (InterPro:IPR019140); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 334.0) & (original description: no original description)","protein_coding" "evm.model.contig_602.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_616.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_716.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_760.1","No alias","Porphyridium purpureum","(at4g24830 : 345.0) arginosuccinate synthase family; FUNCTIONS IN: argininosuccinate synthase activity, ATP binding; INVOLVED IN: arginine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Argininosuccinate synthase, conserved site (InterPro:IPR018223), Argininosuccinate synthase (InterPro:IPR001518); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 690.0) & (original description: no original description)","protein_coding" "evm.model.contig_790.3","No alias","Porphyridium purpureum","(at5g41480 : 92.0) Encodes a dihydrofolate synthetase based on yeast complementation experiments. This protein is involved in folate biosynthesis.; GLOBULAR ARREST1 (GLA1); FUNCTIONS IN: dihydrofolate synthase activity; INVOLVED IN: one-carbon metabolic process, embryo development ending in seed dormancy; LOCATED IN: mitochondrial matrix; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mur ligase, central (InterPro:IPR013221), Folylpolyglutamate synthetase, conserved site (InterPro:IPR018109), Mur ligase, C-terminal (InterPro:IPR004101), Folylpolyglutamate synthetase (InterPro:IPR001645); BEST Arabidopsis thaliana protein match is: DHFS-FPGS homolog B (TAIR:AT5G05980.2); Has 8245 Blast hits to 8243 proteins in 2505 species: Archae - 47; Bacteria - 5105; Metazoa - 156; Fungi - 354; Plants - 131; Viruses - 0; Other Eukaryotes - 2452 (source: NCBI BLink). & (reliability: 184.0) & (original description: no original description)","protein_coding" "evm.model.tig00000042.231","No alias","Cyanophora paradoxa","(o81263|kith_orysa : 138.0) Thymidine kinase (EC 2.7.1.21) - Oryza sativa (Rice) & (at5g23070 : 136.0) Thymidine kinase; FUNCTIONS IN: thymidine kinase activity, ATP binding; INVOLVED IN: pyrimidine deoxyribonucleoside interconversion, anaerobic respiration; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thymidine kinase (InterPro:IPR001267), Thymidine kinase, conserved site (InterPro:IPR020633); BEST Arabidopsis thaliana protein match is: Thymidine kinase (TAIR:AT3G07800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 272.0) & (original description: no original description)","protein_coding" "evm.model.tig00000042.241","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000042.30","No alias","Cyanophora paradoxa","(at1g63160 : 390.0) replication factor C 2 (RFC2); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA) (TAIR:AT1G21690.1); Has 17520 Blast hits to 17472 proteins in 2840 species: Archae - 620; Bacteria - 9832; Metazoa - 859; Fungi - 958; Plants - 372; Viruses - 89; Other Eukaryotes - 4790 (source: NCBI BLink). & (reliability: 780.0) & (original description: no original description)","protein_coding" "evm.model.tig00000057.46","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000076.93","No alias","Cyanophora paradoxa","(o04235|ssrp1_vicfa : 250.0) FACT complex subunit SSRP1 (Facilitates chromatin transcription complex subunit SSRP1) (Recombination signal sequence recognition protein 1) - Vicia faba (Broad bean) & (at3g28730 : 239.0) encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SSRP1. Along with STP16 binds to the promoter of FLC.; high mobility group (HMG); CONTAINS InterPro DOMAIN/s: Structure-specific recognition protein (InterPro:IPR000969), High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B1 (TAIR:AT3G51880.2); Has 8066 Blast hits to 7188 proteins in 653 species: Archae - 0; Bacteria - 14; Metazoa - 5623; Fungi - 822; Plants - 671; Viruses - 15; Other Eukaryotes - 921 (source: NCBI BLink). & (reliability: 478.0) & (original description: no original description)","protein_coding" "evm.model.tig00000093.121","No alias","Cyanophora paradoxa","(q9xfg3|tbg_phypa : 270.0) Tubulin gamma chain (Gamma tubulin) - Physcomitrella patens (Moss) & (at5g05620 : 262.0) Paralog of TUBG1, required for centrosomal and noncentrosomal microtubule nucleation. Involved in specification of cell identity, such as stomatal patterning. Constitutively expressed throughout plant.; gamma-tubulin complex protein 2 (GCP2); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: in 9 processes; LOCATED IN: in 6 components; CONTAINS InterPro DOMAIN/s: Gamma tubulin (InterPro:IPR002454), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: gamma-tubulin (TAIR:AT3G61650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 524.0) & (original description: no original description)","protein_coding" "evm.model.tig00000093.122","No alias","Cyanophora paradoxa","(q9xfg3|tbg_phypa : 385.0) Tubulin gamma chain (Gamma tubulin) - Physcomitrella patens (Moss) & (at5g05620 : 376.0) Paralog of TUBG1, required for centrosomal and noncentrosomal microtubule nucleation. Involved in specification of cell identity, such as stomatal patterning. Constitutively expressed throughout plant.; gamma-tubulin complex protein 2 (GCP2); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: in 9 processes; LOCATED IN: in 6 components; CONTAINS InterPro DOMAIN/s: Gamma tubulin (InterPro:IPR002454), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: gamma-tubulin (TAIR:AT3G61650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 752.0) & (original description: no original description)","protein_coding" "evm.model.tig00000093.4","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000144.112","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000144.164","No alias","Cyanophora paradoxa","(at2g16440 : 634.0) MINICHROMOSOME MAINTENANCE 4 (MCM4); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 4 (InterPro:IPR008047); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT5G44635.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q43704|mcm3_maize : 294.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1268.0) & (original description: no original description)","protein_coding" "evm.model.tig00000144.81","No alias","Cyanophora paradoxa","(at5g05970 : 123.0) a WD40 repeat protein related to the animal NEDD1/GCP-WD protein, which interacts with the g-tubulin complex. Plays a critical role in MT organization during mitosis; NEURAL PRECURSOR CELL EXPRESSED, DEVELOPMENTALLY DOWN-REGULATED GENE 1 (NEDD1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: in 6 processes; LOCATED IN: kinetochore microtubule, CUL4 RING ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 246.0) & (original description: no original description)","protein_coding" "evm.model.tig00000147.46","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000157.40","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000157.83","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000237.42","No alias","Cyanophora paradoxa","(o48653|dpola_orysa : 568.0) DNA polymerase alpha catalytic subunit (EC 2.7.7.7) - Oryza sativa (Rice) & (at5g67100 : 554.0) Encodes the putative catalytic subunit of the DNA polymerase alpha. Interacts with genes involved in chromatin-mediated cellular memory. ICU2 genetically interacts with TERMINAL FLOWER2, the ortholog of HETEROCHROMATIN PROTEIN1 of animals and yeasts, and with the Polycomb group (PcG) gene CURLY LEAF. A number of regulatory genes were derepressed in the icu2-1 mutant, including genes associated with flowering time, floral meristem, and floral organ identity. Mutant has curled, involute leaves and causes early flowering.; INCURVATA2 (ICU2); FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: negative regulation of flower development, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134), Zinc finger, DNA-directed DNA polymerase, family B, alpha (InterPro:IPR015088), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, pol2 (InterPro:IPR004578); BEST Arabidopsis thaliana protein match is: DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (TAIR:AT5G63960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1108.0) & (original description: no original description)","protein_coding" "evm.model.tig00000241.178","No alias","Cyanophora paradoxa","(q9lre5|dpod2_orysa : 317.0) DNA polymerase delta small subunit (EC 2.7.7.7) - Oryza sativa (Rice) & (at2g42120 : 311.0) DNA polymerase delta small subunit (POLD2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 622.0) & (original description: no original description)","protein_coding" "evm.model.tig00000241.188","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000241.38","No alias","Cyanophora paradoxa","(at4g02060 : 657.0) Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.; PROLIFERA (PRL); CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 7 (InterPro:IPR008050); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT5G44635.1). & (q43704|mcm3_maize : 291.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1314.0) & (original description: no original description)","protein_coding" "evm.model.tig00000241.91","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000254.120","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000342.9","No alias","Cyanophora paradoxa","(at5g41880 : 330.0) POLA3; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer, DNA replication; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, small subunit (InterPro:IPR002755), DNA primase, small subunit, eukaryotic/archaeal (InterPro:IPR014052); Has 510 Blast hits to 504 proteins in 249 species: Archae - 95; Bacteria - 0; Metazoa - 124; Fungi - 138; Plants - 44; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink). & (reliability: 660.0) & (original description: no original description)","protein_coding" "evm.model.tig00000350.25","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000383.42","No alias","Cyanophora paradoxa","(at3g27060 : 431.0) Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development.; TSO MEANING 'UGLY' IN CHINESE 2 (TSO2); FUNCTIONS IN: oxidoreductase activity, transition metal ion binding, ribonucleoside-diphosphate reductase activity; INVOLVED IN: in 6 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase-related (InterPro:IPR012348), Ribonucleotide reductase (InterPro:IPR000358), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078); BEST Arabidopsis thaliana protein match is: ribonucleotide reductase 2A (TAIR:AT3G23580.1); Has 9355 Blast hits to 9350 proteins in 2299 species: Archae - 34; Bacteria - 4270; Metazoa - 263; Fungi - 240; Plants - 185; Viruses - 729; Other Eukaryotes - 3634 (source: NCBI BLink). & (p49730|rir2_tobac : 427.0) Ribonucleoside-diphosphate reductase small chain (EC 1.17.4.1) (Ribonucleotide reductase small subunit) (Ribonucleoside-diphosphate reductase R2 subunit) - Nicotiana tabacum (Common tobacco) & (reliability: 862.0) & (original description: no original description)","protein_coding" "evm.model.tig00000383.89","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000405.51","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000551.12","No alias","Cyanophora paradoxa"," (original description: no original description)","protein_coding" "evm.model.tig00000571.19","No alias","Cyanophora paradoxa","(at2g19330 : 115.0) Encodes PIRL6, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.; plant intracellular ras group-related LRR 6 (PIRL6); INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 7 (TAIR:AT4G29880.1); Has 63918 Blast hits to 28732 proteins in 1043 species: Archae - 35; Bacteria - 6419; Metazoa - 27911; Fungi - 2141; Plants - 23572; Viruses - 21; Other Eukaryotes - 3819 (source: NCBI BLink). & (reliability: 208.0) & (original description: no original description)","protein_coding" "evm.model.tig00000615.16","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000704.48","No alias","Cyanophora paradoxa","(at5g27740 : 386.0) A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.; EMBRYO DEFECTIVE 2775 (EMB2775); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp-loader complex, subunit E, C-terminal (InterPro:IPR019483), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA) (TAIR:AT1G21690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 772.0) & (original description: no original description)","protein_coding" "evm.model.tig00000711.46","No alias","Cyanophora paradoxa","(at2g27170 : 471.0) Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment.; TITAN7 (TTN7); FUNCTIONS IN: ATP binding; INVOLVED IN: sister chromatid cohesion, chromosome segregation; LOCATED IN: cohesin complex, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 2 (TAIR:AT5G62410.1); Has 158776 Blast hits to 77347 proteins in 3496 species: Archae - 2059; Bacteria - 28403; Metazoa - 67946; Fungi - 11949; Plants - 6773; Viruses - 706; Other Eukaryotes - 40940 (source: NCBI BLink). & (reliability: 942.0) & (original description: no original description)","protein_coding" "evm.model.tig00000718.32","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000718.65","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000754.31","No alias","Cyanophora paradoxa","(at1g08130 : 306.0) Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus.; DNA ligase 1 (LIG1); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, DNA replication, DNA recombination; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059); BEST Arabidopsis thaliana protein match is: ATP-dependent DNA ligase (TAIR:AT1G49250.1); Has 3556 Blast hits to 3521 proteins in 879 species: Archae - 298; Bacteria - 1538; Metazoa - 375; Fungi - 434; Plants - 112; Viruses - 159; Other Eukaryotes - 640 (source: NCBI BLink). & (q7x7e9|dnl4_orysa : 80.9) Putative DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (Polydeoxyribonucleotide synthase [ATP] 4) - Oryza sativa (Rice) & (reliability: 612.0) & (original description: no original description)","protein_coding" "evm.model.tig00000789.15","No alias","Cyanophora paradoxa","(at4g32700 : 299.0) Encodes a homolog of Drosophila MUS308 and mammalian DNA polymerase, which prevent spontaneous or DNA damage-induced production of DNA double strand breaks. Two conserved functional domains: an N-terminal superfamily II DNA/RNA helicase domain and a C-terminal prokaryotic-type DNA polymerase I domain. Required for regulated cell division and differentiation in meristems. Mutant plants show morphological defects, such as short roots, serrated leaves, and fasciation, as well as defective patterns of cell division and differentiation in the meristem. Mutant plants had 2.5 to 4.5-fold higher expression of ATGR1, ATBRCA1 and RAD51 genes. TEB is required for normal progression of DNA replication and for correct expression of genes during development.; helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding; FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of gene expression, DNA replication, DNA recombination, photomorphogenesis; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA-directed DNA polymerase, family A, palm domain (InterPro:IPR001098), DNA/RNA helicase, C-terminal (InterPro:IPR001650), DNA polymerase A domain (InterPro:IPR002298), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT2G42270.1); Has 17628 Blast hits to 16579 proteins in 2941 species: Archae - 600; Bacteria - 7507; Metazoa - 1254; Fungi - 1190; Plants - 590; Viruses - 412; Other Eukaryotes - 6075 (source: NCBI BLink). & (reliability: 598.0) & (original description: no original description)","protein_coding" "evm.model.tig00000789.46","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000808.15","No alias","Cyanophora paradoxa","(at5g58230 : 455.0) Encodes a WD-40 repeat containing protein that functions in chromatin assembly as part of the CAF1 and FIE complex. Mutants exhibit parthenogenetic development that includes proliferation of unfertilized endosperm and embryos. In heterozygous plants 50% of embryos abort. Of the aborted embryos the early aborted class are homozygous and the later aborting lass are heterozygotes in which the defective allele is maternally transmitted. Other phenotypes include defects in ovule morphogenesis and organ initiation,as well as increased levels of heterochromatic DNA. MSI1 is needed for the transition to flowering. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis. In the ovule, the MSI1 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization. MSI is biallelically expressed, the paternall allele is expressed in the endosperm and embryo and is not imprinted. MSI1 forms a complex with RBR1 that is required for activation of the imprinted genes FIS2 and FWA. This activation is mediated by MSI1/RBR1 mediated repression of MET1.; MULTICOPY SUPRESSOR OF IRA1 (MSI1); FUNCTIONS IN: protein binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus, chloroplast, chromatin remodeling complex, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone-binding protein RBBP4 (InterPro:IPR022052), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT2G16780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 910.0) & (original description: no original description)","protein_coding" "evm.model.tig00000823.25","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000857.21","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000865.33","No alias","Cyanophora paradoxa","(p25387|gblp_chlre : 151.0) Guanine nucleotide-binding protein subunit beta-like protein - Chlamydomonas reinhardtii & (at3g49660 : 140.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: G-protein coupled receptor protein signaling pathway; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 118516 Blast hits to 43755 proteins in 1024 species: Archae - 92; Bacteria - 12360; Metazoa - 47439; Fungi - 25856; Plants - 15887; Viruses - 9; Other Eukaryotes - 16873 (source: NCBI BLink). & (reliability: 270.0) & (original description: no original description)","protein_coding" "evm.model.tig00000889.12","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000900.23","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000940.20","No alias","Cyanophora paradoxa","(at4g35470 : 118.0) Encodes PIRL4, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.; plant intracellular ras group-related LRR 4 (PIRL4); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 5 (TAIR:AT2G17440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 230.0) & (original description: no original description)","protein_coding" "evm.model.tig00000970.31","No alias","Cyanophora paradoxa","(at1g08260 : 86.3) Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.; TILTED 1 (TIL1); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: positive regulation of S phase of mitotic cell cycle, negative regulation of long-day photoperiodism, flowering, embryo development ending in seed dormancy; LOCATED IN: apoplast, epsilon DNA polymerase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), Domain of unknown function DUF1744 (InterPro:IPR013697), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134); BEST Arabidopsis thaliana protein match is: DNA polymerase epsilon catalytic subunit (TAIR:AT2G27120.1); Has 2011 Blast hits to 1700 proteins in 652 species: Archae - 331; Bacteria - 603; Metazoa - 305; Fungi - 291; Plants - 83; Viruses - 58; Other Eukaryotes - 340 (source: NCBI BLink). & (reliability: 172.6) & (original description: no original description)","protein_coding" "evm.model.tig00000980.11","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000980.12","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000984.18","No alias","Cyanophora paradoxa","(at5g15920 : 305.0) Encodes SMC5 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 5), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage.; structural maintenance of chromosomes 5 (SMC5); FUNCTIONS IN: ATP binding; INVOLVED IN: sister chromatid cohesion, chromosome segregation; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G61460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 610.0) & (original description: no original description)","protein_coding" "evm.model.tig00000989.31","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00001049.34","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00001056.24","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00001073.15","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00001094.18","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00001107.10","No alias","Cyanophora paradoxa","(at1g67630 : 106.0) DNA polymerase alpha 2 (POLA2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase alpha, subunit B N-terminal (InterPro:IPR013627), DNA polymerase alpha, subunit B (InterPro:IPR016722), DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 415 Blast hits to 412 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 140; Plants - 46; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). & (reliability: 212.0) & (original description: no original description)","protein_coding" "evm.model.tig00001154.43","No alias","Cyanophora paradoxa","(at5g52910 : 104.0) homolog of Drosophila timeless; TIMELESS (ATIM); CONTAINS InterPro DOMAIN/s: Timeless C-terminal (InterPro:IPR007725), Timeless protein (InterPro:IPR006906); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 208.0) & (original description: no original description)","protein_coding" "evm.model.tig00001224.8","No alias","Cyanophora paradoxa","(at3g18524 : 614.0) Encodes a DNA mismatch repair homolog of human MutS gene, MSH6. MSH2 is involved in maintaining genome stability and repressing recombination of mismatched heteroduplexes.There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2 has different binding specificity to different mismatches in combination with MSH3, MSH6, or MSH7.; MUTS homolog 2 (MSH2); FUNCTIONS IN: damaged DNA binding, protein binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, negative regulation of reciprocal meiotic recombination; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein, MSH2 (InterPro:IPR011184); BEST Arabidopsis thaliana protein match is: homolog of DNA mismatch repair protein MSH3 (TAIR:AT4G25540.1); Has 13560 Blast hits to 13453 proteins in 2654 species: Archae - 128; Bacteria - 8942; Metazoa - 734; Fungi - 813; Plants - 457; Viruses - 3; Other Eukaryotes - 2483 (source: NCBI BLink). & (q9xgc9|msh2_maize : 591.0) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 1228.0) & (original description: no original description)","protein_coding" "evm.model.tig00001299.12","No alias","Cyanophora paradoxa","(at4g31400 : 91.7) Encodes CTF7, a homolog of the yeast CTF protein required for the formation of sister chromatid cohesion. Arabidopsis CTF7 is similar to Saccharomyces cerevisiae CTF7 in that it lacks an N-terminal extension, exhibits acetyltransferase activity, and can complement a yeast ctf7 temperature-sensitive mutation. Arabidopsis CTF7 is critical for female gametophyte and embryo development, but not for the establishment of mitotic cohesion during microgametogenesis or during endosperm development.; CTF7; FUNCTIONS IN: damaged DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: sister chromatid cohesion, embryo sac development, embryo development; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA-repair protein, UmuC-like (InterPro:IPR001126); Has 328 Blast hits to 327 proteins in 141 species: Archae - 0; Bacteria - 2; Metazoa - 149; Fungi - 104; Plants - 43; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). & (reliability: 183.4) & (original description: no original description)","protein_coding" "evm.model.tig00001302.6","No alias","Cyanophora paradoxa","(at3g25100 : 125.0) Required for normal meiosis, may act in the last round of DNA replication prior to meiosis, sequence similar to yeast CDC45; cell division cycle 45 (CDC45); CONTAINS InterPro DOMAIN/s: CDC45-like protein (InterPro:IPR003874); Has 1810 Blast hits to 1657 proteins in 252 species: Archae - 0; Bacteria - 25; Metazoa - 666; Fungi - 449; Plants - 176; Viruses - 35; Other Eukaryotes - 459 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description)","protein_coding" "evm.model.tig00001333.26","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00001374.22","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00001545.7","No alias","Cyanophora paradoxa","(q9lre6|dpod1_orysa : 1007.0) DNA polymerase delta catalytic subunit (EC 2.7.7.7) - Oryza sativa (Rice) & (at5g63960 : 1000.0) EMBRYO DEFECTIVE 2780 (EMB2780); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: DNA replication, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, pol2 (InterPro:IPR004578); BEST Arabidopsis thaliana protein match is: recovery protein 3 (TAIR:AT1G67500.2). & (reliability: 2000.0) & (original description: no original description)","protein_coding" "evm.model.tig00001574.4","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020531.58","No alias","Cyanophora paradoxa","(at2g23530 : 96.7) Zinc-finger domain of monoamine-oxidase A repressor R1; CONTAINS InterPro DOMAIN/s: Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: Zinc-finger domain of monoamine-oxidase A repressor R1 (TAIR:AT4G37110.1); Has 512 Blast hits to 506 proteins in 112 species: Archae - 0; Bacteria - 4; Metazoa - 144; Fungi - 73; Plants - 256; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). & (reliability: 193.4) & (original description: no original description)","protein_coding" "evm.model.tig00020537.14","No alias","Cyanophora paradoxa","(at1g04020 : 90.1) Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent proteinñprotein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.; breast cancer associated RING 1 (BARD1); FUNCTIONS IN: transcription coactivator activity, DNA binding; INVOLVED IN: DNA repair, regulation of meristem structural organization, leaf development; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 (TAIR:AT4G21070.1); Has 6045 Blast hits to 5706 proteins in 320 species: Archae - 0; Bacteria - 47; Metazoa - 4577; Fungi - 362; Plants - 542; Viruses - 11; Other Eukaryotes - 506 (source: NCBI BLink). & (reliability: 180.2) & (original description: no original description)","protein_coding" "evm.model.tig00020537.22","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020553.141","No alias","Cyanophora paradoxa","(q43266|pcna_maize : 272.0) Proliferating cell nuclear antigen (PCNA) - Zea mays (Maize) & (at1g07370 : 265.0) Encodes putative proliferating cell nuclear antigen involved in cell cycle regulation.; proliferating cellular nuclear antigen 1 (PCNA1); CONTAINS InterPro DOMAIN/s: Proliferating cell nuclear antigen, PCNA (InterPro:IPR000730), Proliferating cell nuclear antigen, PCNA, C-terminal (InterPro:IPR022649), Proliferating cell nuclear antigen, PCNA, conserved site (InterPro:IPR022659), Proliferating cell nuclear antigen, PCNA, N-terminal (InterPro:IPR022648); BEST Arabidopsis thaliana protein match is: proliferating cell nuclear antigen 2 (TAIR:AT2G29570.1); Has 1857 Blast hits to 1845 proteins in 456 species: Archae - 391; Bacteria - 0; Metazoa - 315; Fungi - 169; Plants - 159; Viruses - 71; Other Eukaryotes - 752 (source: NCBI BLink). & (reliability: 530.0) & (original description: no original description)","protein_coding" "evm.model.tig00020553.145","No alias","Cyanophora paradoxa","(at3g54670 : 678.0) Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment.; TITAN8 (TTN8); CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosome 3 (TAIR:AT5G48600.1). & (reliability: 1356.0) & (original description: no original description)","protein_coding" "evm.model.tig00020553.90","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020554.125","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020554.132","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020554.16","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020554.77","No alias","Cyanophora paradoxa","(at1g44900 : 595.0) Encodes MCM2 (MINICHROMOSOME MAINTENANCE 2), a protein essential to embryo development. Overexpression results in altered root meristem function.; MINICHROMOSOME MAINTENANCE 2 (MCM2); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: nuclear chromatin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 2 (InterPro:IPR008045), MCM protein 2, N-terminal (InterPro:IPR021092); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1). & (q43704|mcm3_maize : 207.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1190.0) & (original description: no original description)","protein_coding" "evm.model.tig00020556.69","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020563.160","No alias","Cyanophora paradoxa","(at5g24630 : 114.0) This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.; brassinosteroid-insensitive4 (BIN4); FUNCTIONS IN: double-stranded DNA binding; INVOLVED IN: in 7 processes; LOCATED IN: DNA topoisomerase complex (ATP-hydrolyzing), nucleus; EXPRESSED IN: cotyledon vascular system, cotyledon, root tip, leaf trichome, leaf; Has 3628 Blast hits to 2405 proteins in 320 species: Archae - 6; Bacteria - 1196; Metazoa - 1107; Fungi - 390; Plants - 165; Viruses - 17; Other Eukaryotes - 747 (source: NCBI BLink). & (reliability: 228.0) & (original description: no original description)","protein_coding" "evm.model.tig00020563.82","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020610.31","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020614.100","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020684.26","No alias","Cyanophora paradoxa","(at3g02920 : 90.9) RPA32B; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Replication protein A, subunit RPA32 (InterPro:IPR014646), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Replication protein A, C-terminal (InterPro:IPR014892); BEST Arabidopsis thaliana protein match is: replicon protein A2 (TAIR:AT2G24490.2). & (reliability: 181.8) & (original description: no original description)","protein_coding" "evm.model.tig00020685.12","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020746.1","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020780.19","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020848.68","No alias","Cyanophora paradoxa","(at1g67320 : 337.0) DNA primase, large subunit family; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, large subunit, eukaryotic (InterPro:IPR016558), DNA primase, large subunit, eukaryotic/archaeal (InterPro:IPR007238). & (reliability: 674.0) & (original description: no original description)","protein_coding" "evm.model.tig00020902.41","No alias","Cyanophora paradoxa","(at5g02820 : 489.0) Involved in the patterning and shape of leaf trichomes. Encodes the DNA topoisomerase VI SPO11-3, involved in endoreduplication; ROOT HAIRLESS 2 (RHL2); CONTAINS InterPro DOMAIN/s: Spo11/DNA topoisomerase VI, subunit A, N-terminal (InterPro:IPR013049), DNA topoisomerase VI, subunit A (InterPro:IPR004085), Spo11/DNA topoisomerase VI, subunit A (InterPro:IPR002815); BEST Arabidopsis thaliana protein match is: Spo11/DNA topoisomerase VI, subunit A protein (TAIR:AT3G13170.1); Has 936 Blast hits to 932 proteins in 314 species: Archae - 223; Bacteria - 16; Metazoa - 170; Fungi - 119; Plants - 152; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink). & (reliability: 978.0) & (original description: no original description)","protein_coding" "evm.model.tig00020904.52","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020911.14","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020912.93","No alias","Cyanophora paradoxa","(at5g20930 : 230.0) Nuclear serine/threonine protein kinase that requires a coiled-coil region for oligomerization and catalytic activity. Required for leaf and flower development. Expression localized to the developing style by stage 13.; TOUSLED (TSL); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, chloroplast, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ataurora3 (TAIR:AT2G45490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 460.0) & (original description: no original description)","protein_coding" "evm.model.tig00020918.5","No alias","Cyanophora paradoxa","(at5g44635 : 634.0) MINICHROMOSOME MAINTENANCE 6 (MCM6); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: shoot apex; EXPRESSED DURING: IL.00 inflorescence just visible; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 6 (InterPro:IPR008049); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q43704|mcm3_maize : 243.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1268.0) & (original description: no original description)","protein_coding" "evm.model.tig00020918.6","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020943.41","No alias","Cyanophora paradoxa","(at2g25100 : 214.0) Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease H activity, RNA binding, catalytic activity, nucleic acid binding; INVOLVED IN: RNA metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit A (InterPro:IPR004649), Ribonuclease HII/HIII (InterPro:IPR001352), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); Has 6305 Blast hits to 6298 proteins in 2456 species: Archae - 256; Bacteria - 4469; Metazoa - 152; Fungi - 137; Plants - 56; Viruses - 3; Other Eukaryotes - 1232 (source: NCBI BLink). & (reliability: 428.0) & (original description: no original description)","protein_coding" "evm.model.tig00021070.70","No alias","Cyanophora paradoxa","(at2g29680 : 205.0) Encodes cell division control protein 6 (CDC6).; cell division control 6 (CDC6); FUNCTIONS IN: ATP binding; INVOLVED IN: regulation of cell cycle, DNA replication; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), CDC6, C-terminal (InterPro:IPR015163), Cell division control, Cdc6 (InterPro:IPR016314); BEST Arabidopsis thaliana protein match is: Cell division control, Cdc6 (TAIR:AT1G07270.1); Has 1385 Blast hits to 1377 proteins in 339 species: Archae - 397; Bacteria - 0; Metazoa - 348; Fungi - 289; Plants - 116; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink). & (reliability: 410.0) & (original description: no original description)","protein_coding" "evm.model.tig00021072.44","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00021105.53","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00021127.4","No alias","Cyanophora paradoxa","(at3g48150 : 429.0) anaphase-promoting complex or cyclosome subunit; anaphase-promoting complex subunit 8 (APC8); FUNCTIONS IN: binding; INVOLVED IN: cell cycle, regulation of mitotic metaphase/anaphase transition; LOCATED IN: anaphase-promoting complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Cdc23 (InterPro:IPR007192), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G16320.1); Has 14789 Blast hits to 8989 proteins in 1164 species: Archae - 889; Bacteria - 6197; Metazoa - 2204; Fungi - 825; Plants - 603; Viruses - 0; Other Eukaryotes - 4071 (source: NCBI BLink). & (reliability: 858.0) & (original description: no original description)","protein_coding" "evm.model.tig00021234.25","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00021254.39","No alias","Cyanophora paradoxa","(at5g59440 : 149.0) Encodes thymidylate kinase which exists in two isoforms in plants. The longer variant of 263 amino acids with a N-terminal extension that is required for localization to the mitochondrion. The second isoform of 224 residues is localized to the cytoplasm and nucleoplasm. Peak of expression occurs during G1/S phase transition.; ZEUS1 (ZEU1); FUNCTIONS IN: thymidylate kinase activity, ATP binding; INVOLVED IN: dTDP biosynthetic process; LOCATED IN: nucleoplasm, mitochondrion, cytoplasm; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thymidylate kinase (InterPro:IPR018094), Thymidylate kinase-like (InterPro:IPR000062), Thymidylate kinase, conserved site (InterPro:IPR018095); Has 5505 Blast hits to 5503 proteins in 2206 species: Archae - 247; Bacteria - 3933; Metazoa - 204; Fungi - 151; Plants - 114; Viruses - 143; Other Eukaryotes - 713 (source: NCBI BLink). & (reliability: 298.0) & (original description: no original description)","protein_coding" "evm.model.tig00021319.28","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00021319.67","No alias","Cyanophora paradoxa","(at2g29570 : 310.0) Functionally interacts with POLH to repair DNA damaged by UVB damage.; proliferating cell nuclear antigen 2 (PCNA2); FUNCTIONS IN: DNA binding, DNA polymerase processivity factor activity; INVOLVED IN: regulation of DNA replication, error-prone translesion synthesis; LOCATED IN: PCNA complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proliferating cell nuclear antigen, PCNA (InterPro:IPR000730), Proliferating cell nuclear antigen, PCNA, C-terminal (InterPro:IPR022649), Proliferating cell nuclear antigen, PCNA, conserved site (InterPro:IPR022659), Proliferating cell nuclear antigen, PCNA, N-terminal (InterPro:IPR022648); BEST Arabidopsis thaliana protein match is: proliferating cellular nuclear antigen 1 (TAIR:AT1G07370.1); Has 1860 Blast hits to 1848 proteins in 457 species: Archae - 391; Bacteria - 0; Metazoa - 314; Fungi - 169; Plants - 159; Viruses - 73; Other Eukaryotes - 754 (source: NCBI BLink). & (o82134|pcna_pea : 310.0) Proliferating cell nuclear antigen - Pisum sativum (Garden pea) & (reliability: 620.0) & (original description: no original description)","protein_coding" "evm.model.tig00021352.40","No alias","Cyanophora paradoxa","(at5g46280 : 487.0) MINICHROMOSOME MAINTENANCE 3 (MCM3); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 3 (InterPro:IPR008046); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT4G02060.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q43704|mcm3_maize : 436.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 974.0) & (original description: no original description)","protein_coding" "evm.model.tig00021374.49","No alias","Cyanophora paradoxa","(at3g57870 : 204.0) Encodes a SUMO liagse that directs the attachment of the small protein SUMO to target proteins via an isopeptide bond. This enzyme is localized to the nucleus and plants with reduced levels of this protein show higher sensitivity to ABA in root growth inhibition assays. It has high similarity to the yeast UBC9 SUMO ligase and is sometimes referred to by that name.; sumo conjugation enzyme 1 (SCE1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1); Has 9584 Blast hits to 9566 proteins in 388 species: Archae - 0; Bacteria - 0; Metazoa - 4206; Fungi - 2037; Plants - 1834; Viruses - 20; Other Eukaryotes - 1487 (source: NCBI BLink). & (p35130|ubc2_medsa : 110.0) Ubiquitin-conjugating enzyme E2-17 kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) - Medicago sativa (Alfalfa) & (reliability: 408.0) & (original description: no original description)","protein_coding" "evm.model.tig00021432.30","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00021434.9","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00021462.13","No alias","Cyanophora paradoxa","(at3g54610 : 310.0) Encodes a histone acetyltransferase that is plays a role in the determination of the embryonic root-shoot axis. It is also required to regulate the floral meristem activity by modulating the extent of expression of WUS and AG. In other eukaryotes, this protein is recruited to specific promoters by DNA binding transcription factors and is thought to promote transcription by acetylating the N-terminal tail of histone H3. The enzyme has indeed been shown to catalyse primarily the acetylation of H3 histone with only traces of H4 and H2A/B being acetylated. Non-acetylated H3 peptide or an H3 peptide that had been previously acetylated on K9 both serve as excellent substrates for HAG1-catalyzed acetylation. However, prior acetylation of H3 lysine 14 blocks radioactive acetylation of the peptide by HAG1. HAG1 is specific for histone H3 lysine 14.; histone acetyltransferase of the GNAT family 1 (HAG1); FUNCTIONS IN: histone acetyltransferase activity, DNA binding, H3 histone acetyltransferase activity; INVOLVED IN: flower development, histone acetylation, response to light stimulus, positive regulation of transcription, root morphogenesis; LOCATED IN: histone acetyltransferase complex, nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Bromodomain, conserved site (InterPro:IPR018359), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: nuclear protein X1 (TAIR:AT5G63320.1); Has 13698 Blast hits to 5805 proteins in 367 species: Archae - 4; Bacteria - 1437; Metazoa - 4852; Fungi - 1484; Plants - 516; Viruses - 1; Other Eukaryotes - 5404 (source: NCBI BLink). & (reliability: 620.0) & (original description: no original description)","protein_coding" "evm.model.tig00021521.14","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00021582.33","No alias","Cyanophora paradoxa","(at4g37110 : 102.0) Zinc-finger domain of monoamine-oxidase A repressor R1; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: Zinc-finger domain of monoamine-oxidase A repressor R1 (TAIR:AT2G23530.1); Has 452 Blast hits to 447 proteins in 93 species: Archae - 0; Bacteria - 0; Metazoa - 137; Fungi - 54; Plants - 229; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description)","protein_coding" "evm.model.tig00021616.10","No alias","Cyanophora paradoxa","(at4g25540 : 375.0) encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH3 heterodimers bound 'insertion-deletion' DNA with three nucleotides (+AAG) or one nucleotide (+T) looped out much better than they bound DNA with a base/base mispair (T/G).; homolog of DNA mismatch repair protein MSH3 (MSH3); CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695); BEST Arabidopsis thaliana protein match is: MUTS homolog 6 (TAIR:AT4G02070.2); Has 14547 Blast hits to 13713 proteins in 2703 species: Archae - 153; Bacteria - 9793; Metazoa - 705; Fungi - 864; Plants - 451; Viruses - 3; Other Eukaryotes - 2578 (source: NCBI BLink). & (q9xgc9|msh2_maize : 143.0) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 750.0) & (original description: no original description)","protein_coding" "evm.model.tig00021621.26","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00021621.29","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00022075.57","No alias","Cyanophora paradoxa","(at5g06910 : 139.0) DnaJ homologue, contains J domain which is common in all known DnaJ proteins but missing G/F domain.; J-domain protein 6 (ATJ6); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT3G12170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 278.0) & (original description: no original description)","protein_coding" "evm.model.tig00022104.3","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "Glyma.01G104600","No alias","Glycine max","Function unknown","protein_coding" "Glyma.01G185800","No alias","Glycine max","heat shock factor 4","protein_coding" "Glyma.01G197300","No alias","Glycine max","Function unknown","protein_coding" "Glyma.02G001800","No alias","Glycine max","Function unknown","protein_coding" "Glyma.02G046100","No alias","Glycine max","RAC-like 6","protein_coding" "Glyma.02G080700","No alias","Glycine max","Function unknown","protein_coding" "Glyma.02G082300","No alias","Glycine max","Small nuclear ribonucleoprotein family protein","protein_coding" "Glyma.02G095600","No alias","Glycine max","ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6","protein_coding" "Glyma.02G106600","No alias","Glycine max","origin recognition complex protein 6","protein_coding" "Glyma.02G147200","No alias","Glycine max","RAN GTPase activating protein 1","protein_coding" "Glyma.02G177400","No alias","Glycine max","alfin-like 3","protein_coding" "Glyma.02G179401","No alias","Glycine max","Function unknown","protein_coding" "Glyma.02G205866","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding" "Glyma.02G252600","No alias","Glycine max","ROP guanine nucleotide exchange factor 5","protein_coding" "Glyma.02G286600","No alias","Glycine max","DNA primases;DNA primases","protein_coding" "Glyma.02G305600","No alias","Glycine max","HEAT SHOCK PROTEIN 89.1","protein_coding" "Glyma.03G026000","No alias","Glycine max","Protein of unknown function (DUF1442)","protein_coding" "Glyma.03G040400","No alias","Glycine max","lipid transfer protein 1","protein_coding" "Glyma.03G154000","No alias","Glycine max","ARM repeat protein interacting with ABF2","protein_coding" "Glyma.03G219200","No alias","Glycine max","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding" "Glyma.04G033100","No alias","Glycine max","Function unknown","protein_coding" "Glyma.04G050550","No alias","Glycine max","KH domain-containing protein","protein_coding" "Glyma.04G089200","No alias","Glycine max","sucrose transporter 4","protein_coding" "Glyma.04G093200","No alias","Glycine max","Protein kinase superfamily protein","protein_coding" "Glyma.04G124800","No alias","Glycine max","zinc induced facilitator-like 1","protein_coding" "Glyma.04G158400","No alias","Glycine max","transducin family protein / WD-40 repeat family protein","protein_coding" "Glyma.04G177100","No alias","Glycine max","Protein of unknown function, DUF593","protein_coding" "Glyma.04G210700","No alias","Glycine max","DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases","protein_coding" "Glyma.04G235500","No alias","Glycine max","defective in meristem silencing 3","protein_coding" "Glyma.04G248700","No alias","Glycine max","Eukaryotic aspartyl protease family protein","protein_coding" "Glyma.04G250200","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding" "Glyma.05G062400","No alias","Glycine max","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein","protein_coding" "Glyma.05G129700","No alias","Glycine max","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding" "Glyma.05G148900","No alias","Glycine max","DNA primase, large subunit family","protein_coding" "Glyma.05G150500","No alias","Glycine max","Function unknown","protein_coding" "Glyma.05G164500","No alias","Glycine max","16S rRNA processing protein RimM family","protein_coding" "Glyma.05G181401","No alias","Glycine max","FK506-binding protein 16-2","protein_coding" "Glyma.05G191333","No alias","Glycine max","Function unknown","protein_coding" "Glyma.05G195200","No alias","Glycine max","Function unknown","protein_coding" "Glyma.05G197900","No alias","Glycine max","SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein","protein_coding" "Glyma.05G232100","No alias","Glycine max","Serinc-domain containing serine and sphingolipid biosynthesis protein","protein_coding" "Glyma.05G234800","No alias","Glycine max","Ribosomal protein S19 family protein","protein_coding" "Glyma.06G037700","No alias","Glycine max","Function unknown","protein_coding" "Glyma.06G045600","No alias","Glycine max","Ubiquitin system component Cue protein","protein_coding" "Glyma.06G080900","No alias","Glycine max","Protein of unknown function (DUF630 and DUF632)","protein_coding" "Glyma.06G116400","No alias","Glycine max","amino acid permease 3","protein_coding" "Glyma.06G132900","No alias","Glycine max","HIT-type Zinc finger family protein","protein_coding" "Glyma.06G143400","No alias","Glycine max","E2F target gene 1","protein_coding" "Glyma.06G145300","No alias","Glycine max","Peroxidase superfamily protein","protein_coding" "Glyma.06G148500","No alias","Glycine max","ribonucleotide reductase 1","protein_coding" "Glyma.06G163700","No alias","Glycine max","Integrase-type DNA-binding superfamily protein","protein_coding" "Glyma.06G187900","No alias","Glycine max","Protein of unknown function, DUF593","protein_coding" "Glyma.06G206800","No alias","Glycine max","transducin family protein / WD-40 repeat family protein","protein_coding" "Glyma.06G310500","No alias","Glycine max","DNA replication helicase, putative","protein_coding" "Glyma.07G005000","No alias","Glycine max","RAD3-like DNA-binding helicase protein","protein_coding" "Glyma.07G043800","No alias","Glycine max","40s ribosomal protein SA B","protein_coding" "Glyma.07G089900","No alias","Glycine max","cytochrome P450, family 71, subfamily A, polypeptide 22","protein_coding" "Glyma.07G107000","No alias","Glycine max","DNAse I-like superfamily protein","protein_coding" "Glyma.07G153500","No alias","Glycine max","receptor like protein 27","protein_coding" "Glyma.07G196800","No alias","Glycine max","lipoxygenase 3","protein_coding" "Glyma.07G213300","No alias","Glycine max","Function unknown","protein_coding" "Glyma.07G240200","No alias","Glycine max","Nucleic acid-binding proteins superfamily","protein_coding" "Glyma.07G254800","No alias","Glycine max","UDP-glycosyltransferase 73B4","protein_coding" "Glyma.07G256600","No alias","Glycine max","RNA-binding (RRM/RBD/RNP motifs) family protein","protein_coding" "Glyma.08G041400","No alias","Glycine max","Protein of unknown function (DUF1666)","protein_coding" "Glyma.08G056500","No alias","Glycine max","annexin 5","protein_coding" "Glyma.08G105600","No alias","Glycine max","DNA primase, large subunit family","protein_coding" "Glyma.08G107400","No alias","Glycine max","Function unknown","protein_coding" "Glyma.08G116100","No alias","Glycine max","Protein of unknown function (DUF640)","protein_coding" "Glyma.08G117500","No alias","Glycine max","cellulose synthase family protein","protein_coding" "Glyma.08G155900","No alias","Glycine max","telomerase reverse transcriptase","protein_coding" "Glyma.08G169900","No alias","Glycine max","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein","protein_coding" "Glyma.08G175050","No alias","Glycine max","glutathione S-transferase TAU 19","protein_coding" "Glyma.08G200800","No alias","Glycine max","protein kinase family protein / peptidoglycan-binding LysM domain-containing protein","protein_coding" "Glyma.08G293000","No alias","Glycine max","SIN3-like 3","protein_coding" "Glyma.08G300500","No alias","Glycine max","phytochrome kinase substrate 1","protein_coding" "Glyma.08G318400","No alias","Glycine max","GDSL-like Lipase/Acylhydrolase superfamily protein","protein_coding" "Glyma.08G334900","No alias","Glycine max","proliferating cell nuclear antigen 2","protein_coding" "Glyma.08G353900","No alias","Glycine max","Ribosomal protein L13 family protein","protein_coding" "Glyma.09G012400","No alias","Glycine max","Function unknown","protein_coding" "Glyma.09G039900","No alias","Glycine max","COBRA-like protein-7 precursor","protein_coding" "Glyma.09G042700","No alias","Glycine max","MATE efflux family protein","protein_coding" "Glyma.09G047300","No alias","Glycine max","minichromosome maintenance (MCM2/3/5) family protein","protein_coding" "Glyma.09G093050","No alias","Glycine max","Function unknown","protein_coding" "Glyma.09G125400","No alias","Glycine max","RING/FYVE/PHD zinc finger superfamily protein","protein_coding" "Glyma.09G140600","No alias","Glycine max","Function unknown","protein_coding" "Glyma.09G159400","No alias","Glycine max","Oxidoreductase family protein","protein_coding" "Glyma.09G165700","No alias","Glycine max","ARF-GAP domain 15","protein_coding" "Glyma.09G173700","No alias","Glycine max","Zinc-finger domain of monoamine-oxidase A repressor R1","protein_coding" "Glyma.09G175050","No alias","Glycine max","ketose-bisphosphate aldolase class-II family protein","protein_coding" "Glyma.09G202766","No alias","Glycine max","disease resistance protein (TIR-NBS-LRR class) family","protein_coding" "Glyma.09G206200","No alias","Glycine max","myb domain protein 39","protein_coding" "Glyma.09G214400","No alias","Glycine max","breast basic conserved 1","protein_coding" "Glyma.09G235300","No alias","Glycine max","myb domain protein 113","protein_coding" "Glyma.10G056000","No alias","Glycine max","SAUR-like auxin-responsive protein family","protein_coding" "Glyma.10G093400","No alias","Glycine max","Cornichon family protein","protein_coding" "Glyma.10G217000","No alias","Glycine max","calcium-dependent protein kinase 4","protein_coding" "Glyma.10G272700","No alias","Glycine max","Function unknown","protein_coding" "Glyma.10G273000","No alias","Glycine max","myb domain protein 62","protein_coding" "Glyma.10G296100","No alias","Glycine max","inositol transporter 1","protein_coding" "Glyma.11G011100","No alias","Glycine max","Function unknown","protein_coding" "Glyma.11G019000","No alias","Glycine max","cytokinin response factor 2","protein_coding" "Glyma.11G027500","No alias","Glycine max","FIZZY-related 2","protein_coding" "Glyma.11G031700","No alias","Glycine max","Function unknown","protein_coding" "Glyma.11G042900","No alias","Glycine max","AT hook motif DNA-binding family protein","protein_coding" "Glyma.11G048366","No alias","Glycine max","ARM repeat superfamily protein","protein_coding" "Glyma.11G086900","No alias","Glycine max","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding" "Glyma.11G100900","No alias","Glycine max","Ankyrin repeat family protein","protein_coding" "Glyma.11G143400","No alias","Glycine max","ribosomal protein L23AB","protein_coding" "Glyma.11G174500","No alias","Glycine max","Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein","protein_coding" "Glyma.11G193300","No alias","Glycine max","Shugoshin C terminus","protein_coding" "Glyma.11G200500","No alias","Glycine max","Protein of unknown function (DUF1191)","protein_coding" "Glyma.11G219800","No alias","Glycine max","lectin protein kinase family protein","protein_coding" "Glyma.11G227001","No alias","Glycine max","F-box family protein","protein_coding" "Glyma.11G239300","No alias","Glycine max","Haloacid dehalogenase-like hydrolase (HAD) superfamily protein","protein_coding" "Glyma.11G247900","No alias","Glycine max","DNA polymerase alpha 2","protein_coding" "Glyma.12G013500","No alias","Glycine max","DNA topoisomerase I alpha","protein_coding" "Glyma.12G014600","No alias","Glycine max","origin recognition complex subunit 3","protein_coding" "Glyma.12G039200","No alias","Glycine max","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding" "Glyma.12G072400","No alias","Glycine max","Dof-type zinc finger DNA-binding family protein","protein_coding" "Glyma.12G164900","No alias","Glycine max","NPK1-related protein kinase 3","protein_coding" "Glyma.12G202700","No alias","Glycine max","epidermal patterning factor 1","protein_coding" "Glyma.12G204600","No alias","Glycine max","Function unknown","protein_coding" "Glyma.12G229500","No alias","Glycine max","Protein of unknown function (DUF640)","protein_coding" "Glyma.12G231200","No alias","Glycine max","DNA-directed DNA polymerases","protein_coding" "Glyma.13G010700","No alias","Glycine max","BRCA2-like B","protein_coding" "Glyma.13G043200","No alias","Glycine max","light-mediated development protein 1 / deetiolated1 (DET1)","protein_coding" "Glyma.13G046800","No alias","Glycine max","Zinc-finger domain of monoamine-oxidase A repressor R1 protein","protein_coding" "Glyma.13G075000","No alias","Glycine max","Basic-leucine zipper (bZIP) transcription factor family protein","protein_coding" "Glyma.13G095400","No alias","Glycine max","Uncharacterised protein family (UPF0497)","protein_coding" "Glyma.13G143500","No alias","Glycine max","Function unknown","protein_coding" "Glyma.13G156300","No alias","Glycine max","DROUGHT SENSITIVE 1","protein_coding" "Glyma.13G182100","No alias","Glycine max","alpha/beta-Hydrolases superfamily protein","protein_coding" "Glyma.13G189600","No alias","Glycine max","microtubule-associated protein 65-5","protein_coding" "Glyma.13G189800","No alias","Glycine max","carboxyesterase 17","protein_coding" "Glyma.13G196200","No alias","Glycine max","Eukaryotic aspartyl protease family protein","protein_coding" "Glyma.13G208300","No alias","Glycine max","basic helix-loop-helix (bHLH) DNA-binding superfamily protein","protein_coding" "Glyma.13G214200","No alias","Glycine max","BRCT domain-containing DNA repair protein","protein_coding" "Glyma.13G220400","No alias","Glycine max","breast cancer susceptibility1","protein_coding" "Glyma.13G222800","No alias","Glycine max","subtilase family protein","protein_coding" "Glyma.13G262600","No alias","Glycine max","purine permease 11","protein_coding" "Glyma.13G270100","No alias","Glycine max","D-mannose binding lectin protein with Apple-like carbohydrate-binding domain","protein_coding" "Glyma.13G272700","No alias","Glycine max","RING/U-box superfamily protein","protein_coding" "Glyma.13G303200","No alias","Glycine max","myb domain protein 14","protein_coding" "Glyma.13G313700","No alias","Glycine max","Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family","protein_coding" "Glyma.13G328700","No alias","Glycine max","tetraspanin3","protein_coding" "Glyma.13G333100","No alias","Glycine max","tonoplast intrinsic protein 1;3","protein_coding" "Glyma.13G340400","No alias","Glycine max","RING/U-box superfamily protein","protein_coding" "Glyma.13G353500","No alias","Glycine max","mitochondrial processing peptidase alpha subunit","protein_coding" "Glyma.14G028200","No alias","Glycine max","DNA primases;DNA primases","protein_coding" "Glyma.14G073300","No alias","Glycine max","phloem protein 2-B10","protein_coding" "Glyma.14G101900","No alias","Glycine max","Function unknown","protein_coding" "Glyma.14G118000","No alias","Glycine max","homolog of Xeroderma pigmentosum complementation group B 2","protein_coding" "Glyma.14G130600","No alias","Glycine max","Function unknown","protein_coding" "Glyma.14G162100","No alias","Glycine max","highly ABA-induced PP2C gene 3","protein_coding" "Glyma.14G217600","No alias","Glycine max","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding" "Glyma.15G022700","No alias","Glycine max","Ribosomal L28e protein family","protein_coding" "Glyma.15G030000","No alias","Glycine max","crinkly4","protein_coding" "Glyma.15G045200","No alias","Glycine max","LOB domain-containing protein 11","protein_coding" "Glyma.15G046800","No alias","Glycine max","emp24/gp25L/p24 family/GOLD family protein","protein_coding" "Glyma.15G182600","No alias","Glycine max","sucrose synthase 4","protein_coding" "Glyma.15G200100","No alias","Glycine max","PLATZ transcription factor family protein","protein_coding" "Glyma.15G210800","No alias","Glycine max","Function unknown","protein_coding" "Glyma.15G259400","No alias","Glycine max","myb domain protein 63","protein_coding" "Glyma.16G126900","No alias","Glycine max","Pathogenesis-related thaumatin superfamily protein","protein_coding" "Glyma.16G163100","No alias","Glycine max","ATP binding;nucleic acid binding;helicases","protein_coding" "Glyma.16G165600","No alias","Glycine max","Function unknown","protein_coding" "Glyma.16G186600","No alias","Glycine max","disease resistance family protein / LRR family protein","protein_coding" "Glyma.16G194000","No alias","Glycine max","single-stranded DNA endonuclease family protein","protein_coding" "Glyma.17G103900","No alias","Glycine max","DROUGHT SENSITIVE 1","protein_coding" "Glyma.17G116700","No alias","Glycine max","Zinc finger (CCCH-type) family protein","protein_coding" "Glyma.17G233900","No alias","Glycine max","Transducin family protein / WD-40 repeat family protein","protein_coding" "Glyma.17G248600","No alias","Glycine max","Protein of unknown function (DUF607)","protein_coding" "Glyma.18G009300","No alias","Glycine max","DNA polymerase alpha 2","protein_coding" "Glyma.18G017500","No alias","Glycine max","Function unknown","protein_coding" "Glyma.18G067800","No alias","Glycine max","proliferating cell nuclear antigen 2","protein_coding" "Glyma.18G074900","No alias","Glycine max","Function unknown","protein_coding" "Glyma.18G078900","No alias","Glycine max","Ankyrin repeat family protein","protein_coding" "Glyma.18G081000","No alias","Glycine max","CCCH-type zinc fingerfamily protein with RNA-binding domain","protein_coding" "Glyma.18G094900","No alias","Glycine max","Pyridoxal phosphate (PLP)-dependent transferases superfamily protein","protein_coding" "Glyma.18G099700","No alias","Glycine max","Major facilitator superfamily protein","protein_coding" "Glyma.18G109100","No alias","Glycine max","glucan synthase-like 7","protein_coding" "Glyma.18G206600","No alias","Glycine max","Integrase-type DNA-binding superfamily protein","protein_coding" "Glyma.18G214700","No alias","Glycine max","MAC/Perforin domain-containing protein","protein_coding" "Glyma.18G228200","No alias","Glycine max","vacuolar iron transporter 1","protein_coding" "Glyma.18G296500","No alias","Glycine max","Function unknown","protein_coding" "Glyma.19G005700","No alias","Glycine max","cysteine-rich RLK (RECEPTOR-like protein kinase) 42","protein_coding" "Glyma.19G015000","No alias","Glycine max","cytochrome P450, family 82, subfamily C, polypeptide 4","protein_coding" "Glyma.19G047300","No alias","Glycine max","Ribosomal protein L36e family protein","protein_coding" "Glyma.19G143100","No alias","Glycine max","Chaperone DnaJ-domain superfamily protein","protein_coding" "Glyma.19G161300","No alias","Glycine max","RNI-like superfamily protein","protein_coding" "Glyma.19G161900","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding" "Glyma.19G196600","No alias","Glycine max","AP2/B3-like transcriptional factor family protein","protein_coding" "Glyma.19G206300","No alias","Glycine max","Kinase interacting (KIP1-like) family protein","protein_coding" "Glyma.19G216100","No alias","Glycine max","Minichromosome maintenance (MCM2/3/5) family protein","protein_coding" "Glyma.19G218900","No alias","Glycine max","Function unknown","protein_coding" "Glyma.20G019900","No alias","Glycine max","DCD (Development and Cell Death) domain protein","protein_coding" "Glyma.20G047400","No alias","Glycine max","Cofactor-independent phosphoglycerate mutase","protein_coding" "Glyma.20G067400","No alias","Glycine max","early nodulin-like protein 8","protein_coding" "Glyma.20G101800","No alias","Glycine max","GRAM domain-containing protein / ABA-responsive protein-related","protein_coding" "Glyma.20G123000","No alias","Glycine max","origin recognition complex subunit 4","protein_coding" "Glyma.20G131300","No alias","Glycine max","Protein of unknown function (DUF620)","protein_coding" "Glyma.20G135600","No alias","Glycine max","methyltransferases","protein_coding" "Glyma.20G197100","No alias","Glycine max","heat shock protein 60","protein_coding" "Glyma.20G197700","No alias","Glycine max","Function unknown","protein_coding" "Glyma.20G205800","No alias","Glycine max","Serine protease inhibitor, potato inhibitor I-type family protein","protein_coding" "Glyma.20G212700","No alias","Glycine max","Protein of unknown function (DUF1442)","protein_coding" "Glyma.20G249200","No alias","Glycine max","Function unknown","protein_coding" "Glyma.U003166","No alias","Glycine max","NAD(P)-binding Rossmann-fold superfamily protein","protein_coding" "GRMZM2G000093","No alias","Zea mays","essential meiotic endonuclease 1B","protein_coding" "GRMZM2G002678","No alias","Zea mays","MATE efflux family protein","protein_coding" "GRMZM2G006530","No alias","Zea mays","homolog of yeast sucrose nonfermenting 4","protein_coding" "GRMZM2G007258","No alias","Zea mays","titan9","protein_coding" "GRMZM2G024196","No alias","Zea mays","YELLOW STRIPE like 7","protein_coding" "GRMZM2G026758","No alias","Zea mays","NAD(P)-binding Rossmann-fold superfamily protein","protein_coding" "GRMZM2G026980","No alias","Zea mays","xyloglucan endotransglucosylase/hydrolase 21","protein_coding" "GRMZM2G029979","No alias","Zea mays","bZIP transcription factor family protein","protein_coding" "GRMZM2G031909","No alias","Zea mays","cytochrome P450, family 87, subfamily A, polypeptide 6","protein_coding" "GRMZM2G033644","No alias","Zea mays","2-oxoacid dehydrogenases acyltransferase family protein","protein_coding" "GRMZM2G036025","No alias","Zea mays","PDI-like 1-2","protein_coding" "GRMZM2G037614","No alias","Zea mays","Transketolase family protein","protein_coding" "GRMZM2G039848","No alias","Zea mays","alpha/beta-Hydrolases superfamily protein","protein_coding" "GRMZM2G042741","No alias","Zea mays","SAUR-like auxin-responsive protein family","protein_coding" "GRMZM2G044317","No alias","Zea mays","DNA primase, large subunit family","protein_coding" "GRMZM2G053916","No alias","Zea mays","electron transfer flavoprotein alpha","protein_coding" "GRMZM2G057571","No alias","Zea mays","zinc knuckle (CCHC-type) family protein","protein_coding" "GRMZM2G059877","No alias","Zea mays","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding" "GRMZM2G066480","No alias","Zea mays","Plant transposase (Ptta/En/Spm family)","protein_coding" "GRMZM2G070305","No alias","Zea mays","peroxisome 1","protein_coding" "GRMZM2G076034","No alias","Zea mays","Transducin/WD40 repeat-like superfamily protein","protein_coding" "GRMZM2G081441","No alias","Zea mays","BTB-POZ and MATH domain 1","protein_coding" "GRMZM2G086707","No alias","Zea mays","DNA-directed DNA polymerases","protein_coding" "GRMZM2G090156","No alias","Zea mays","methyltransferases","protein_coding" "GRMZM2G090505","No alias","Zea mays","Caleosin-related family protein","protein_coding" "GRMZM2G094353","No alias","Zea mays","Ran BP2/NZF zinc finger-like superfamily protein","protein_coding" "GRMZM2G097641","No alias","Zea mays","Sucrose-6F-phosphate phosphohydrolase family protein","protein_coding" "GRMZM2G099502","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G104783","No alias","Zea mays","cytochrome P450, family 78, subfamily A, polypeptide 6","protein_coding" "GRMZM2G107021","No alias","Zea mays","Seven transmembrane MLO family protein","protein_coding" "GRMZM2G111980","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G116158","No alias","Zea mays","P-type ATPase of Arabidopsis 2","protein_coding" "GRMZM2G124739","No alias","Zea mays","AGC kinase 1.5","protein_coding" "GRMZM2G125156","No alias","Zea mays","related to KPC1","protein_coding" "GRMZM2G126900","No alias","Zea mays","myo-inositol oxygenase 1","protein_coding" "GRMZM2G130351","No alias","Zea mays","DNA primase, large subunit family","protein_coding" "GRMZM2G133275","No alias","Zea mays","Lactoylglutathione lyase / glyoxalase I family protein","protein_coding" "GRMZM2G135052","No alias","Zea mays","Homeodomain-like superfamily protein","protein_coding" "GRMZM2G136964","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G141859","No alias","Zea mays","pol-like 5","protein_coding" "GRMZM2G160454","No alias","Zea mays","plant intracellular ras group-related LRR 4","protein_coding" "GRMZM2G160922","No alias","Zea mays","ACT-like protein tyrosine kinase family protein","protein_coding" "GRMZM2G176433","No alias","Zea mays","Beta-1,3-N-Acetylglucosaminyltransferase family protein","protein_coding" "GRMZM2G181507","No alias","Zea mays","MAC/Perforin domain-containing protein","protein_coding" "GRMZM2G320298","No alias","Zea mays","alpha/beta-Hydrolases superfamily protein","protein_coding" "GRMZM2G322817","No alias","Zea mays","Protein of unknown function (DUF581)","protein_coding" "GRMZM2G350711","No alias","Zea mays","POZ/BTB containin G-protein 1","protein_coding" "GRMZM2G363377","No alias","Zea mays","Sec14p-like phosphatidylinositol transfer family protein","protein_coding" "GRMZM2G377595","No alias","Zea mays","Wound-responsive family protein","protein_coding" "GRMZM2G403313","No alias","Zea mays","NAD(P)-binding Rossmann-fold superfamily protein","protein_coding" "GRMZM2G412846","No alias","Zea mays","Histone H3 K4-specific methyltransferase SET7/9 family protein","protein_coding" "GRMZM2G437859","No alias","Zea mays","Xanthine/uracil permease family protein","protein_coding" "GRMZM2G439297","No alias","Zea mays","DNA primases;DNA primases","protein_coding" "GRMZM2G451506","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G465764","No alias","Zea mays","glucan synthase-like 7","protein_coding" "GRMZM2G468610","No alias","Zea mays","cysteine-rich RLK (RECEPTOR-like protein kinase) 10","protein_coding" "GRMZM2G478876","No alias","Zea mays","Protein kinase superfamily protein","protein_coding" "GRMZM2G495337","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G504175","No alias","Zea mays","Function unknown","protein_coding" "GRMZM5G806012","No alias","Zea mays","Function unknown","protein_coding" "GRMZM5G808624","No alias","Zea mays","pantothenate kinase 2","protein_coding" "GRMZM5G820360","No alias","Zea mays","Function unknown","protein_coding" "GRMZM5G829738","No alias","Zea mays","CTC-interacting domain 4","protein_coding" "GRMZM5G839593","No alias","Zea mays","Major facilitator superfamily protein","protein_coding" "GRMZM5G873083","No alias","Zea mays","Function unknown","protein_coding" "GRMZM5G879211","No alias","Zea mays","Function unknown","protein_coding" "GRMZM5G882189","No alias","Zea mays","SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein","protein_coding" "GRMZM6G314950","No alias","Zea mays","DNA primases;DNA primases","protein_coding" "GRMZM6G748133","No alias","Zea mays","chitin elicitor receptor kinase 1","protein_coding" "HORVU0Hr1G004890.12","No alias","Hordeum vulgare","WRKY-type transcription factor","protein_coding" "HORVU0Hr1G022570.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU1Hr1G003340.9","No alias","Hordeum vulgare","EC_4.1 carbon-carbon lyase & aromatic amino acid decarboxylase","protein_coding" "HORVU1Hr1G004580.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase)","protein_coding" "HORVU1Hr1G031460.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU1Hr1G035160.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU1Hr1G043200.4","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU1Hr1G046320.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU1Hr1G059180.9","No alias","Hordeum vulgare","primase component *(POLA4) of DNA polymerase alpha complex","protein_coding" "HORVU1Hr1G067520.3","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU1Hr1G072420.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU1Hr1G076590.9","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU1Hr1G079970.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU1Hr1G086910.5","No alias","Hordeum vulgare","PSY precursor polypeptide","protein_coding" "HORVU1Hr1G091170.1","No alias","Hordeum vulgare","calcium sensor *(CML)","protein_coding" "HORVU1Hr1G093670.1","No alias","Hordeum vulgare","T2-type RNase *(RNS)","protein_coding" "HORVU2Hr1G003980.8","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU2Hr1G025290.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU2Hr1G053610.5","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU2Hr1G067250.4","No alias","Hordeum vulgare","regulatory protein (CIB) of blue light perception & bHLH-type transcription factor","protein_coding" "HORVU2Hr1G069780.3","No alias","Hordeum vulgare","primase component *(POLA3) of DNA polymerase alpha complex","protein_coding" "HORVU2Hr1G070520.2","No alias","Hordeum vulgare","component *(NdhB) of NDH membrane subcomplex M","protein_coding" "HORVU2Hr1G072090.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU2Hr1G098740.1","No alias","Hordeum vulgare","component *(NRPC4) of RNA polymerase III complex","protein_coding" "HORVU2Hr1G100090.7","No alias","Hordeum vulgare","nicotinate transporter *(NiaP)","protein_coding" "HORVU2Hr1G110650.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU2Hr1G111930.1","No alias","Hordeum vulgare","component *(p24-beta) of GPI-anchor protein cargo receptor complex","protein_coding" "HORVU2Hr1G112570.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU3Hr1G011580.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU3Hr1G019190.1","No alias","Hordeum vulgare","glutaredoxin","protein_coding" "HORVU3Hr1G022060.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU3Hr1G024700.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU3Hr1G035000.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU3Hr1G035280.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU3Hr1G048960.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU3Hr1G069430.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU3Hr1G094370.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU4Hr1G033810.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU4Hr1G060900.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU4Hr1G074180.9","No alias","Hordeum vulgare","topoisomerase component *(TOP3-alpha) of RTR Holliday junction dissolution complex","protein_coding" "HORVU4Hr1G086130.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU4Hr1G090190.4","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G007650.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G015220.9","No alias","Hordeum vulgare","cold-responsive protein kinase *(CRPK) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU5Hr1G016990.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G023440.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G029400.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G050240.3","No alias","Hordeum vulgare","regulatory protein *(CYCLASE) of Programmed Cell Death","protein_coding" "HORVU5Hr1G053320.3","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G057380.3","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G061340.1","No alias","Hordeum vulgare","EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen","protein_coding" "HORVU5Hr1G063050.1","No alias","Hordeum vulgare","EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU5Hr1G069340.1","No alias","Hordeum vulgare","mTERF-type transcription factor","protein_coding" "HORVU5Hr1G080220.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G107370.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G110090.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G110470.1","No alias","Hordeum vulgare","MADS/AGL-type transcription factor","protein_coding" "HORVU6Hr1G011860.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU6Hr1G014700.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU6Hr1G018350.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU6Hr1G021590.2","No alias","Hordeum vulgare","primase component *(POLA4) of DNA polymerase alpha complex","protein_coding" "HORVU6Hr1G022680.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU6Hr1G029780.1","No alias","Hordeum vulgare","MAPKKK-kinase protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU6Hr1G031910.6","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU6Hr1G036200.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU6Hr1G053120.1","No alias","Hordeum vulgare","L-lectin protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU6Hr1G054820.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU6Hr1G067420.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU6Hr1G069340.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU6Hr1G085030.6","No alias","Hordeum vulgare","group-II formin actin filament elongation factor","protein_coding" "HORVU6Hr1G091230.1","No alias","Hordeum vulgare","NAC-type transcription factor","protein_coding" "HORVU7Hr1G001820.3","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU7Hr1G002320.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU7Hr1G008170.3","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU7Hr1G016130.1","No alias","Hordeum vulgare","component *(eIF3a) of eIF3 mRNA-to-PIC binding complex","protein_coding" "HORVU7Hr1G027430.1","No alias","Hordeum vulgare","large subunit of ribonucleoside-diphosphate reductase heterodimer & EC_1.17 oxidoreductase acting on CH or CH2 group","protein_coding" "HORVU7Hr1G030120.1","No alias","Hordeum vulgare","histone *(H2A)","protein_coding" "HORVU7Hr1G038980.9","No alias","Hordeum vulgare","small GTPase *(ROP)","protein_coding" "HORVU7Hr1G051560.4","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU7Hr1G060240.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU7Hr1G081320.3","No alias","Hordeum vulgare","anion channel *(QUAC/ALMT)","protein_coding" "HORVU7Hr1G121400.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "Kfl00001_0690","kfl00001_0690_v1.1","Klebsormidium nitens","(at5g62410 : 1028.0) SMC2-1 (SMC2); structural maintenance of chromosomes 2 (SMC2); FUNCTIONS IN: transporter activity; INVOLVED IN: chromosome organization; LOCATED IN: condensin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: Structural maintenance of chromosomes (SMC) family protein (TAIR:AT3G47460.1); Has 126046 Blast hits to 65003 proteins in 3391 species: Archae - 1784; Bacteria - 23628; Metazoa - 52968; Fungi - 10094; Plants - 6737; Viruses - 431; Other Eukaryotes - 30404 (source: NCBI BLink). & (reliability: 2056.0) & (original description: no original description)","protein_coding" "Kfl00003_0170","kfl00003_0170_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00004_0070","kfl00004_0070_v1.1","Klebsormidium nitens","(at3g19180 : 127.0) Encodes a chloroplast division factor located in the plastid inner envelope with its N-terminus exposed to the stroma. PARC6 influences FtsZ assembly and is required for recruitment of PDV1 during chloroplast division.; paralog of ARC6 (PARC6); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT5G42480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 254.0) & (original description: no original description)","protein_coding" "Kfl00005_0580","kfl00005_0580_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00007_0060","kfl00007_0060_v1.1","Klebsormidium nitens","(at5g01630 : 307.0) Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with with both Rad51 and Dss1(I) or both Dmc1 and Dss1(I) in a tripartite complex.; BRCA2-like B (BRCA2B); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BREAST CANCER 2 like 2A (TAIR:AT4G00020.1); Has 281 Blast hits to 210 proteins in 91 species: Archae - 0; Bacteria - 4; Metazoa - 134; Fungi - 18; Plants - 61; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). & (reliability: 614.0) & (original description: no original description)","protein_coding" "Kfl00007_0070","kfl00007_0070_v1.1","Klebsormidium nitens","(at1g59600 : 87.0) ZCW7; Has 136 Blast hits to 136 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 174.0) & (original description: no original description)","protein_coding" "Kfl00014_0390","kfl00014_0390_v1.1","Klebsormidium nitens","(at4g20325 : 186.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 372.0) & (original description: no original description)","protein_coding" "Kfl00021_0400","kfl00021_0400_v1.1","Klebsormidium nitens","(at5g50375 : 289.0) Converts pentacyclic cyclopropyl sterols to conventional tetracyclic sterols. CPI1 function during and just after division and support gravitropism by establishing polar PIN2 localization. Required for endocytosis of PIN2; cyclopropyl isomerase (CPI1); FUNCTIONS IN: cycloeucalenol cycloisomerase activity; INVOLVED IN: pinocytosis, sterol biosynthetic process, positive gravitropism, cytokinesis; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cycloeucalenol cycloisomerase (InterPro:IPR020532). & (reliability: 578.0) & (original description: no original description)","protein_coding" "Kfl00024_0350","kfl00024_0350_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00025_0110","kfl00025_0110_v1.1","Klebsormidium nitens","(at3g52155 : 141.0) Phosphoglycerate mutase family protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078); Has 1391 Blast hits to 1391 proteins in 390 species: Archae - 1; Bacteria - 792; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 554 (source: NCBI BLink). & (reliability: 282.0) & (original description: no original description)","protein_coding" "Kfl00026_0270","kfl00026_0270_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00028_0260","kfl00028_0260_v1.1","Klebsormidium nitens","(at2g44580 : 266.0) zinc ion binding; CONTAINS InterPro DOMAIN/s: Sister chromatid cohesion protein DCC1 (InterPro:IPR019128); Has 214 Blast hits to 211 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 49; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 532.0) & (original description: no original description)","protein_coding" "Kfl00028_0370","kfl00028_0370_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00028_g56","kfl00028_g56_v1.1","Klebsormidium nitens","(at2g27960 : 105.0) catalytic subunit of cyclin dependent kinase 1. physically interact with cyclin-dependent kinases (CDKs) and play an essential, but yet not entirely resolved, role in the regulation of the cell cycle; cyclin-dependent kinase-subunit 1 (CKS1); CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase, regulatory subunit (InterPro:IPR000789); BEST Arabidopsis thaliana protein match is: CDK-subunit 2 (TAIR:AT2G27970.1); Has 657 Blast hits to 657 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 305; Fungi - 139; Plants - 105; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). & (reliability: 210.0) & (original description: no original description)","protein_coding" "Kfl00029_0090","kfl00029_0090_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00029_g28","kfl00029_g28_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00031_0310","kfl00031_0310_v1.1","Klebsormidium nitens","(at2g05210 : 102.0) Encodes AtPOT1a, an accessory factor for telomerase required for positive telomere length regulation. Note on nomenclature: different names have been given to Arabidopsis POT-like genes (Kuchar and Fajkus, 2004; Shakirov et al, 2005; Tani and Murata, 2005). According to a unifying nomenclature (Surovtseva et al, 2007), At2g05210 (previously named AtPOT1) is designated AtPOT1a, while At5g06310 (previously named AtPOT2) is designated AtPOT1b.; Protection of Telomeres 1a (AtPOT1a); CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Telomere end binding protein (InterPro:IPR011564); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G06310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description)","protein_coding" "Kfl00038_0210","kfl00038_0210_v1.1","Klebsormidium nitens","(at3g27120 : 445.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27130.1); Has 33109 Blast hits to 30842 proteins in 3139 species: Archae - 1459; Bacteria - 13342; Metazoa - 4781; Fungi - 3652; Plants - 2738; Viruses - 26; Other Eukaryotes - 7111 (source: NCBI BLink). & (q96372|cdc48_capan : 131.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 890.0) & (original description: no original description)","protein_coding" "Kfl00038_0260","kfl00038_0260_v1.1","Klebsormidium nitens","(q9lre6|dpod1_orysa : 1360.0) DNA polymerase delta catalytic subunit (EC 2.7.7.7) - Oryza sativa (Rice) & (at5g63960 : 1356.0) EMBRYO DEFECTIVE 2780 (EMB2780); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: DNA replication, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, pol2 (InterPro:IPR004578); BEST Arabidopsis thaliana protein match is: recovery protein 3 (TAIR:AT1G67500.2). & (reliability: 2712.0) & (original description: no original description)","protein_coding" "Kfl00039_0170","kfl00039_0170_v1.1","Klebsormidium nitens","(at2g32590 : 335.0) LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barren (InterPro:IPR008418); Has 467 Blast hits to 447 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 147; Fungi - 168; Plants - 39; Viruses - 1; Other Eukaryotes - 108 (source: NCBI BLink). & (reliability: 670.0) & (original description: no original description)","protein_coding" "Kfl00049_0150","kfl00049_0150_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00050_0180","kfl00050_0180_v1.1","Klebsormidium nitens","(at1g27880 : 512.0) DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEAD/DEAH box RNA helicase family protein (TAIR:AT4G35740.1); Has 41244 Blast hits to 39032 proteins in 2984 species: Archae - 762; Bacteria - 21282; Metazoa - 5401; Fungi - 4173; Plants - 3671; Viruses - 588; Other Eukaryotes - 5367 (source: NCBI BLink). & (reliability: 1024.0) & (original description: no original description)","protein_coding" "Kfl00052_0340","kfl00052_0340_v1.1","Klebsormidium nitens","(at5g22110 : 456.0) Encodes a protein with similarity to DNA polymerase epsilon subunit B an essential gene that is required for DNA replication. Homozygous mutants are embryo lethal. Expressed in meristematic , rapidly dividing regions.; DNA polymerase epsilon subunit B2 (DPB2); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding; INVOLVED IN: DNA replication, DNA-dependent DNA replication; LOCATED IN: epsilon DNA polymerase complex, nucleus; EXPRESSED IN: embryo, male gametophyte, apical meristem, female gametophyte; CONTAINS InterPro DOMAIN/s: DNA polymerase epsilon, subunit B (InterPro:IPR016266), DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 412 Blast hits to 394 proteins in 202 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 144; Plants - 62; Viruses - 0; Other Eukaryotes - 81 (source: NCBI BLink). & (reliability: 912.0) & (original description: no original description)","protein_coding" "Kfl00053_0050","kfl00053_0050_v1.1","Klebsormidium nitens","(p08437|h3_volca : 147.0) Histone H3 - Volvox carteri & (at5g10980 : 146.0) Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 292.0) & (original description: no original description)","protein_coding" "Kfl00054_0235","kfl00054_0235_v1.1","Klebsormidium nitens","(at5g42480 : 110.0) Shows homology to the cyanobacterial cell division protein Ftn2, mutant only has two mesophyll cell chloroplasts. Protein was localized to a ring at the center of the chloroplasts. Probably involved in functions in the assembly and/or stabilization of the plastid-dividing FtsZ ring, inhibiting FtsZ filament formation in the chloroplast.; ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6 (ARC6); FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, chloroplast fission, chloroplast organization; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: paralog of ARC6 (TAIR:AT3G19180.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 220.0) & (original description: no original description)","protein_coding" "Kfl00055_0170","kfl00055_0170_v1.1","Klebsormidium nitens","(at3g57060 : 412.0) binding; FUNCTIONS IN: binding; INVOLVED IN: mitosis, chromosome condensation; LOCATED IN: nucleus, condensin complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Non-SMC condensin subunit, XCAP-D2/Cnd1 (InterPro:IPR007673), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT4G15890.1). & (reliability: 824.0) & (original description: no original description)","protein_coding" "Kfl00057_0090","kfl00057_0090_v1.1","Klebsormidium nitens","(at2g22140 : 132.0) Forms a complex with MUS81 that functions as endonuclease in DNA recombination and repair processes.; essential meiotic endonuclease 1B (EME1B); CONTAINS InterPro DOMAIN/s: ERCC4 domain (InterPro:IPR006166); BEST Arabidopsis thaliana protein match is: essential meiotic endonuclease 1A (TAIR:AT2G21800.1); Has 542 Blast hits to 486 proteins in 142 species: Archae - 0; Bacteria - 42; Metazoa - 170; Fungi - 104; Plants - 48; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). & (reliability: 264.0) & (original description: no original description)","protein_coding" "Kfl00061_0280","kfl00061_0280_v1.1","Klebsormidium nitens","(at1g08260 : 1660.0) Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.; TILTED 1 (TIL1); FUNCTIONS IN: DNA-directed DNA polymerase activity, DNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: positive regulation of S phase of mitotic cell cycle, negative regulation of long-day photoperiodism, flowering, embryo development ending in seed dormancy; LOCATED IN: apoplast, epsilon DNA polymerase complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), Domain of unknown function DUF1744 (InterPro:IPR013697), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134); BEST Arabidopsis thaliana protein match is: DNA polymerase epsilon catalytic subunit (TAIR:AT2G27120.1); Has 2011 Blast hits to 1700 proteins in 652 species: Archae - 331; Bacteria - 603; Metazoa - 305; Fungi - 291; Plants - 83; Viruses - 58; Other Eukaryotes - 340 (source: NCBI BLink). & (reliability: 3320.0) & (original description: no original description)","protein_coding" "Kfl00062_0110","kfl00062_0110_v1.1","Klebsormidium nitens","(at4g01160 : 99.8) BTB/POZ/Kelch-associated protein; CONTAINS InterPro DOMAIN/s: BTB/POZ (InterPro:IPR013069), BTB/Kelch-associated (InterPro:IPR011705), BTB/POZ fold (InterPro:IPR011333), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: POZ/BTB containin G-protein 1 (TAIR:AT3G61600.2); Has 3481 Blast hits to 3463 proteins in 124 species: Archae - 0; Bacteria - 0; Metazoa - 3173; Fungi - 4; Plants - 136; Viruses - 49; Other Eukaryotes - 119 (source: NCBI BLink). & (reliability: 199.6) & (original description: no original description)","protein_coding" "Kfl00063_0180","kfl00063_0180_v1.1","Klebsormidium nitens","(at1g65470 : 90.9) Chromatin Assembly Factor-1 (CAF-1) p150 subunit. Mutants have reduced heterochromatin content. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.; FASCIATA 1 (FAS1); FUNCTIONS IN: histone binding; INVOLVED IN: in 11 processes; LOCATED IN: chromatin assembly complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chromatin assembly factor 1 subunit A (InterPro:IPR022043). & (reliability: 181.8) & (original description: no original description)","protein_coding" "Kfl00066_0260","kfl00066_0260_v1.1","Klebsormidium nitens","(at5g15920 : 686.0) Encodes SMC5 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 5), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage.; structural maintenance of chromosomes 5 (SMC5); FUNCTIONS IN: ATP binding; INVOLVED IN: sister chromatid cohesion, chromosome segregation; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G61460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1372.0) & (original description: no original description)","protein_coding" "Kfl00066_0340","kfl00066_0340_v1.1","Klebsormidium nitens","(at3g42660 : 451.0) transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), Protein of unknown function DUF3639 (InterPro:IPR022100), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G23430.1); Has 41589 Blast hits to 20655 proteins in 706 species: Archae - 66; Bacteria - 8583; Metazoa - 14223; Fungi - 8894; Plants - 4578; Viruses - 3; Other Eukaryotes - 5242 (source: NCBI BLink). & (reliability: 902.0) & (original description: no original description)","protein_coding" "Kfl00067_0060","kfl00067_0060_v1.1","Klebsormidium nitens","(at2g01120 : 291.0) Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.; origin recognition complex subunit 4 (ORC4); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Origin recognition complex, subunit 4 (InterPro:IPR016527). & (reliability: 582.0) & (original description: no original description)","protein_coding" "Kfl00069_0130","kfl00069_0130_v1.1","Klebsormidium nitens","(at5g22010 : 421.0) replication factor C1 (RFC1); FUNCTIONS IN: DNA clamp loader activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex, intracellular; CONTAINS InterPro DOMAIN/s: DNA replication factor RFC1, C-terminal (InterPro:IPR013725), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA replication factor C, large subunit (InterPro:IPR012178), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G04730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 842.0) & (original description: no original description)","protein_coding" "Kfl00072_0060","kfl00072_0060_v1.1","Klebsormidium nitens","(at1g57820 : 631.0) Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.; VARIANT IN METHYLATION 1 (VIM1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SRA-YDG (InterPro:IPR003105), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G57800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1262.0) & (original description: no original description)","protein_coding" "Kfl00075_0320","kfl00075_0320_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00076_0270","kfl00076_0270_v1.1","Klebsormidium nitens","(at2g32240 : 110.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). & (reliability: 212.0) & (original description: no original description)","protein_coding" "Kfl00078_0080","kfl00078_0080_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00079_0180","kfl00079_0180_v1.1","Klebsormidium nitens","(at4g34620 : 85.5) Encodes ribosomal protein S16, has embryo-defective lethal mutant phenotype; small subunit ribosomal protein 16 (SSR16); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis, embryo development ending in seed dormancy; LOCATED IN: ribosome, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S16 (InterPro:IPR000307); BEST Arabidopsis thaliana protein match is: Ribosomal protein S16 family protein (TAIR:AT5G56940.1); Has 8683 Blast hits to 8683 proteins in 3031 species: Archae - 0; Bacteria - 5404; Metazoa - 128; Fungi - 129; Plants - 717; Viruses - 0; Other Eukaryotes - 2305 (source: NCBI BLink). & (reliability: 171.0) & (original description: no original description)","protein_coding" "Kfl00080_0200","kfl00080_0200_v1.1","Klebsormidium nitens","(at1g70210 : 131.0) Encodes a D-type cyclin that physically interacts with CDC2A. Its expression is upregulated early during germination.; CYCLIN D1;1 (CYCD1;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: G1 phase of mitotic cell cycle, regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin D2;1 (TAIR:AT2G22490.1); Has 3455 Blast hits to 3453 proteins in 343 species: Archae - 0; Bacteria - 0; Metazoa - 1586; Fungi - 382; Plants - 1073; Viruses - 13; Other Eukaryotes - 401 (source: NCBI BLink). & (reliability: 262.0) & (original description: no original description)","protein_coding" "Kfl00086_0370","kfl00086_0370_v1.1","Klebsormidium nitens","(at3g05740 : 520.0) RECQ helicase l1 (RECQI1); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: DNA recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DNA helicase (RECQl4A) (TAIR:AT1G10930.1); Has 22913 Blast hits to 22836 proteins in 2673 species: Archae - 358; Bacteria - 13443; Metazoa - 2936; Fungi - 2132; Plants - 1261; Viruses - 9; Other Eukaryotes - 2774 (source: NCBI BLink). & (reliability: 1040.0) & (original description: no original description)","protein_coding" "Kfl00090_0010","kfl00090_0010_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00094_0200","kfl00094_0200_v1.1","Klebsormidium nitens","(at5g52910 : 319.0) homolog of Drosophila timeless; TIMELESS (ATIM); CONTAINS InterPro DOMAIN/s: Timeless C-terminal (InterPro:IPR007725), Timeless protein (InterPro:IPR006906); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 638.0) & (original description: no original description)","protein_coding" "Kfl00094_0205","kfl00094_0205_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00100_0250","kfl00100_0250_v1.1","Klebsormidium nitens","(at1g67320 : 534.0) DNA primase, large subunit family; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, large subunit, eukaryotic (InterPro:IPR016558), DNA primase, large subunit, eukaryotic/archaeal (InterPro:IPR007238). & (reliability: 1068.0) & (original description: no original description)","protein_coding" "Kfl00108_0080","kfl00108_0080_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00108_0130","kfl00108_0130_v1.1","Klebsormidium nitens","(q8lpu5|cmt3_maize : 469.0) DNA (cytosine-5)-methyltransferase 3 (EC 2.1.1.37) (Chromomethylase 3) (DNA methyltransferase 105) - Zea mays (Maize) & (at4g19020 : 419.0) chromomethylase 2 (CMT2); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: chromatin assembly or disassembly, DNA methylation; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 3 (TAIR:AT1G69770.1); Has 5135 Blast hits to 4403 proteins in 1000 species: Archae - 207; Bacteria - 2602; Metazoa - 790; Fungi - 215; Plants - 463; Viruses - 25; Other Eukaryotes - 833 (source: NCBI BLink). & (reliability: 838.0) & (original description: no original description)","protein_coding" "Kfl00109_0210","kfl00109_0210_v1.1","Klebsormidium nitens","(at5g64630 : 397.0) Chromatin Assembly Factor-1 (CAF-1) p60 subunit. Involved in organization of the shoot and root apical meristems. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.; FASCIATA 2 (FAS2); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of histone chaperone HIRA (TAIR:AT3G44530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p93107|pf20_chlre : 84.0) Flagellar WD repeat protein PF20 - Chlamydomonas reinhardtii & (reliability: 794.0) & (original description: no original description)","protein_coding" "Kfl00110_0030","kfl00110_0030_v1.1","Klebsormidium nitens","(at3g27640 : 283.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 36714 Blast hits to 22017 proteins in 645 species: Archae - 42; Bacteria - 5151; Metazoa - 14249; Fungi - 8186; Plants - 4562; Viruses - 0; Other Eukaryotes - 4524 (source: NCBI BLink). & (reliability: 566.0) & (original description: no original description)","protein_coding" "Kfl00110_0200","kfl00110_0200_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00116_0090","kfl00116_0090_v1.1","Klebsormidium nitens","(at1g04020 : 184.0) Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent proteinñprotein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.; breast cancer associated RING 1 (BARD1); FUNCTIONS IN: transcription coactivator activity, DNA binding; INVOLVED IN: DNA repair, regulation of meristem structural organization, leaf development; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 (TAIR:AT4G21070.1); Has 6045 Blast hits to 5706 proteins in 320 species: Archae - 0; Bacteria - 47; Metazoa - 4577; Fungi - 362; Plants - 542; Viruses - 11; Other Eukaryotes - 506 (source: NCBI BLink). & (reliability: 354.0) & (original description: no original description)","protein_coding" "Kfl00117_0160","kfl00117_0160_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00121_0170","kfl00121_0170_v1.1","Klebsormidium nitens","(at5g54260 : 676.0) DNA repair and meiotic recombination protein, component of MRE11 complex with RAD50 and NBS1; MEIOTIC RECOMBINATION 11 (MRE11); FUNCTIONS IN: hydrolase activity, manganese ion binding, protein serine/threonine phosphatase activity, exonuclease activity, endonuclease activity; INVOLVED IN: double-strand break repair, DNA metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), DNA repair exonuclease (InterPro:IPR003701), Mre11, DNA-binding (InterPro:IPR007281); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1352.0) & (original description: no original description)","protein_coding" "Kfl00128_0250","kfl00128_0250_v1.1","Klebsormidium nitens","(at5g43080 : 138.0) Cyclin A3;1 (CYCA3;1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin (InterPro:IPR006670), G2/mitotic-specific cyclin A (InterPro:IPR015453), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin, A/B/D/E (InterPro:IPR014400); BEST Arabidopsis thaliana protein match is: cyclin-dependent protein kinase 3;2 (TAIR:AT1G47210.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p25010|ccnal_dauca : 132.0) G2/mitotic-specific cyclin C13-1 (A-like cyclin) (Fragment) - Daucus carota (Carrot) & (reliability: 276.0) & (original description: no original description)","protein_coding" "Kfl00130_0130","kfl00130_0130_v1.1","Klebsormidium nitens","(at5g27740 : 530.0) A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.; EMBRYO DEFECTIVE 2775 (EMB2775); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp-loader complex, subunit E, C-terminal (InterPro:IPR019483), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA) (TAIR:AT1G21690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1060.0) & (original description: no original description)","protein_coding" "Kfl00130_0230","kfl00130_0230_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00131_0170","kfl00131_0170_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00135_0100","kfl00135_0100_v1.1","Klebsormidium nitens","(at5g41880 : 457.0) POLA3; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer, DNA replication; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, small subunit (InterPro:IPR002755), DNA primase, small subunit, eukaryotic/archaeal (InterPro:IPR014052); Has 510 Blast hits to 504 proteins in 249 species: Archae - 95; Bacteria - 0; Metazoa - 124; Fungi - 138; Plants - 44; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink). & (reliability: 914.0) & (original description: no original description)","protein_coding" "Kfl00137_0140","kfl00137_0140_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00142_0080","kfl00142_0080_v1.1","Klebsormidium nitens","(q7g8y3|isw2_orysa : 220.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (at3g06400 : 218.0) Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature.; chromatin-remodeling protein 11 (CHR11); FUNCTIONS IN: in 7 functions; INVOLVED IN: cell growth, embryo sac development; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), SLIDE (InterPro:IPR015195), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2). & (reliability: 410.0) & (original description: no original description)","protein_coding" "Kfl00144_0030","kfl00144_0030_v1.1","Klebsormidium nitens","(at1g18335 : 168.0) Acyl-CoA N-acyltransferases (NAT) superfamily protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 336.0) & (original description: no original description)","protein_coding" "Kfl00144_0180","kfl00144_0180_v1.1","Klebsormidium nitens","(at1g24470 : 90.5) Encodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene.; beta-ketoacyl reductase 2 (KCR2); FUNCTIONS IN: oxidoreductase activity, ketoreductase activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: beta-ketoacyl reductase 1 (TAIR:AT1G67730.1); Has 80088 Blast hits to 80001 proteins in 3265 species: Archae - 726; Bacteria - 55481; Metazoa - 4714; Fungi - 3206; Plants - 2039; Viruses - 0; Other Eukaryotes - 13922 (source: NCBI BLink). & (reliability: 181.0) & (original description: no original description)","protein_coding" "Kfl00153_0160","kfl00153_0160_v1.1","Klebsormidium nitens","(at4g02070 : 834.0) encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.; MUTS homolog 6 (MSH6); FUNCTIONS IN: damaged DNA binding; INVOLVED IN: mismatch repair; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein Msh6 (InterPro:IPR017261), DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-homologue MSH6 (InterPro:IPR015536), Tudor domain (InterPro:IPR002999); BEST Arabidopsis thaliana protein match is: homolog of DNA mismatch repair protein MSH3 (TAIR:AT4G25540.1). & (q9xgc9|msh2_maize : 175.0) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 1668.0) & (original description: no original description)","protein_coding" "Kfl00164_g3","kfl00164_g3_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00169_0080","kfl00169_0080_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00176_0100","kfl00176_0100_v1.1","Klebsormidium nitens","(at5g58140 : 89.4) Membrane-bound protein serine/threonine kinase that functions as blue light photoreceptor in redundancy with PHO1. Involved in stomatal opening, chloroplast movement and phototropism. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. PHOT2 possesses two LOV (LOV1 and LOV2, for light-oxygen-voltage-sensing) domains involved in FMN-binding and a C-terminus forming a serine/threonine kinase domain. LOV2 acts as an inhibitor of phototropin kinase in the dark, and light cancels the inhibition through cysteine-FMN adduct formation. LOV1 in contrast acts as an attenuator of photoactivation. Localized to the Golgi apparatus under the induction of blue light.; phototropin 2 (PHOT2); FUNCTIONS IN: protein serine/threonine kinase activity, FMN binding, kinase activity, blue light photoreceptor activity; INVOLVED IN: in 7 processes; LOCATED IN: Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Protein kinase, ATP binding site (InterPro:IPR017441), PAS fold (InterPro:IPR013767), Serine/threonine-protein kinase domain (InterPro:IPR002290), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: phototropin 1 (TAIR:AT3G45780.2); Has 25181 Blast hits to 21357 proteins in 1460 species: Archae - 236; Bacteria - 6754; Metazoa - 8411; Fungi - 2718; Plants - 3113; Viruses - 9; Other Eukaryotes - 3940 (source: NCBI BLink). & (q5z8k3|ado1_orysa : 87.0) Adagio-like protein 1 - Oryza sativa (Rice) & (reliability: 169.4) & (original description: no original description)","protein_coding" "Kfl00181_0220","kfl00181_0220_v1.1","Klebsormidium nitens","(at4g08990 : 1038.0) DNA (cytosine-5-)-methyltransferase family protein; FUNCTIONS IN: DNA binding, DNA (cytosine-5-)-methyltransferase activity; INVOLVED IN: DNA methylation; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA (cytosine-5)-methyltransferase 1 (InterPro:IPR017198), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), DNA methylase, C-5 cytosine-specific, active site (InterPro:IPR018117); BEST Arabidopsis thaliana protein match is: DNA methyltransferase 2 (TAIR:AT4G14140.1); Has 7214 Blast hits to 6137 proteins in 1440 species: Archae - 249; Bacteria - 4362; Metazoa - 525; Fungi - 274; Plants - 335; Viruses - 111; Other Eukaryotes - 1358 (source: NCBI BLink). & (q9axt8|cmt1_maize : 184.0) DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (Chromomethylase 1) (Zea methyltransferase2) (Zmet2) (DNA cytosine methyltransferase MET2a) - Zea mays (Maize) & (reliability: 2076.0) & (original description: no original description)","protein_coding" "Kfl00200_0040","kfl00200_0040_v1.1","Klebsormidium nitens","(at5g22750 : 253.0) DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer; RAD5; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: embryo, sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT5G43530.1); Has 27107 Blast hits to 18179 proteins in 1771 species: Archae - 108; Bacteria - 7266; Metazoa - 8140; Fungi - 5089; Plants - 2446; Viruses - 173; Other Eukaryotes - 3885 (source: NCBI BLink). & (reliability: 468.0) & (original description: no original description)","protein_coding" "Kfl00201_0050","kfl00201_0050_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00202_0040","kfl00202_0040_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00203_0160","kfl00203_0160_v1.1","Klebsormidium nitens","(at1g10930 : 726.0) DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination.; RECQ4A; FUNCTIONS IN: helicase activity, ATP-dependent 3'-5' DNA helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: chromosome organization, response to DNA damage stimulus, double-strand break repair via homologous recombination; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RQC domain (InterPro:IPR018982), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Helicase/RNase D C-terminal, HRDC domain (InterPro:IPR002121); BEST Arabidopsis thaliana protein match is: RECQ helicase L4B (TAIR:AT1G60930.1); Has 34923 Blast hits to 34782 proteins in 2821 species: Archae - 633; Bacteria - 21324; Metazoa - 3687; Fungi - 2728; Plants - 1606; Viruses - 18; Other Eukaryotes - 4927 (source: NCBI BLink). & (reliability: 1452.0) & (original description: no original description)","protein_coding" "Kfl00208_0200","kfl00208_0200_v1.1","Klebsormidium nitens","(at3g48540 : 256.0) Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine deaminase (InterPro:IPR015517); Has 3737 Blast hits to 3733 proteins in 1421 species: Archae - 65; Bacteria - 2323; Metazoa - 218; Fungi - 134; Plants - 52; Viruses - 89; Other Eukaryotes - 856 (source: NCBI BLink). & (reliability: 512.0) & (original description: no original description)","protein_coding" "Kfl00208_0210","kfl00208_0210_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00209_0100","kfl00209_0100_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00211_0100","kfl00211_0100_v1.1","Klebsormidium nitens","(at4g09020 : 951.0) Encodes an isoamylase-like protein. Mutant studies show that the gene is strongly involved in starch breakdown. A GUS-protein fusion product was shown to localize to the surface of chloroplastic structures reminiscent of starch granules. In the mutants, the chloroplastic α-amylase AMY3 is upregulated.; isoamylase 3 (ISA3); FUNCTIONS IN: isoamylase activity, alpha-amylase activity; INVOLVED IN: carbohydrate metabolic process, starch catabolic process; LOCATED IN: chloroplast, chloroplast stroma, chloroplast starch grain; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl hydrolase, family 13, all-beta (InterPro:IPR013780), Immunoglobulin-like fold (InterPro:IPR013783), Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: isoamylase 1 (TAIR:AT2G39930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1902.0) & (original description: no original description)","protein_coding" "Kfl00213_0020","kfl00213_0020_v1.1","Klebsormidium nitens","(at4g14385 : 114.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf6 (InterPro:IPR015418); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 228.0) & (original description: no original description)","protein_coding" "Kfl00213_0030","kfl00213_0030_v1.1","Klebsormidium nitens","(at1g04730 : 462.0) Necessary for sister chromatid cohesion. Acts in synergy with ETG1.; CHROMOSOME TRANSMISSION FIDELITY 18 (CTF18); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: sister chromatid cohesion; LOCATED IN: replication fork; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: replication factor C1 (TAIR:AT5G22010.1); Has 4018 Blast hits to 4006 proteins in 709 species: Archae - 400; Bacteria - 666; Metazoa - 673; Fungi - 766; Plants - 379; Viruses - 21; Other Eukaryotes - 1113 (source: NCBI BLink). & (reliability: 924.0) & (original description: no original description)","protein_coding" "Kfl00220_0150","kfl00220_0150_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00222_0100","kfl00222_0100_v1.1","Klebsormidium nitens","(at5g37630 : 265.0) EMBRYO DEFECTIVE 2656 (EMB2656); FUNCTIONS IN: binding; INVOLVED IN: mitotic chromosome condensation, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 333 Blast hits to 316 proteins in 147 species: Archae - 0; Bacteria - 4; Metazoa - 113; Fungi - 138; Plants - 47; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). & (reliability: 530.0) & (original description: no original description)","protein_coding" "Kfl00224_0030","kfl00224_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00231_0010","kfl00231_0010_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00257_0140","kfl00257_0140_v1.1","Klebsormidium nitens","(at3g06350 : 423.0) MATERNAL EFFECT EMBRYO ARREST 32 (MEE32); FUNCTIONS IN: NADP or NADPH binding, 3-dehydroquinate dehydratase activity, shikimate 5-dehydrogenase activity, binding, catalytic activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase (InterPro:IPR006151), Aldolase-type TIM barrel (InterPro:IPR013785), Quinate/shikimate 5-dehydrogenase (InterPro:IPR011342), NAD(P)-binding domain (InterPro:IPR016040), Dehydroquinase class I (InterPro:IPR001381), Shikimate dehydrogenase substrate binding, N-terminal (InterPro:IPR013708); Has 14455 Blast hits to 14453 proteins in 2669 species: Archae - 507; Bacteria - 10604; Metazoa - 0; Fungi - 391; Plants - 114; Viruses - 0; Other Eukaryotes - 2839 (source: NCBI BLink). & (reliability: 846.0) & (original description: no original description)","protein_coding" "Kfl00281_0060","kfl00281_0060_v1.1","Klebsormidium nitens","(at2g23530 : 224.0) Zinc-finger domain of monoamine-oxidase A repressor R1; CONTAINS InterPro DOMAIN/s: Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: Zinc-finger domain of monoamine-oxidase A repressor R1 (TAIR:AT4G37110.1); Has 512 Blast hits to 506 proteins in 112 species: Archae - 0; Bacteria - 4; Metazoa - 144; Fungi - 73; Plants - 256; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). & (reliability: 448.0) & (original description: no original description)","protein_coding" "Kfl00281_0130","kfl00281_0130_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00302_0030","kfl00302_0030_v1.1","Klebsormidium nitens","(at1g67780 : 163.0) Zinc-finger domain of monoamine-oxidase A repressor R1 protein; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), DDT domain, subgroup (InterPro:IPR018500), Cell division cycle-associated protein (InterPro:IPR018866); BEST Arabidopsis thaliana protein match is: Zinc-finger domain of monoamine-oxidase A repressor R1 protein (TAIR:AT1G67270.1); Has 462 Blast hits to 453 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 73; Plants - 215; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). & (reliability: 326.0) & (original description: no original description)","protein_coding" "Kfl00302_0040","kfl00302_0040_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00307_0080","kfl00307_0080_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00309_0170","kfl00309_0170_v1.1","Klebsormidium nitens","(at5g63920 : 891.0) Encodes topoisomerase 3alpha. Suppresses somatic crossovers. Essential for resolution of meiotic recombination intermediates.; topoisomerase 3alpha (TOP3A); FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: in 7 processes; LOCATED IN: chromosome; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IA, zn finger (InterPro:IPR013498), DNA topoisomerase, type IA, core (InterPro:IPR000380), DNA topoisomerase, type IA, domain 2 (InterPro:IPR003601), DNA topoisomerase, type IA, DNA-binding (InterPro:IPR003602), DNA topoisomerase, type IA, central (InterPro:IPR013497), Zinc finger, GRF-type (InterPro:IPR010666), DNA topoisomerase, type IA, central region, subdomain 3 (InterPro:IPR013826), Toprim domain, subgroup (InterPro:IPR006154), DNA topoisomerase, type IA, central region, subdomain 1 (InterPro:IPR013824), Toprim domain (InterPro:IPR006171), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: DNA topoisomerase, type IA, core (TAIR:AT2G32000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1782.0) & (original description: no original description)","protein_coding" "Kfl00323_0130","kfl00323_0130_v1.1","Klebsormidium nitens","(at3g46940 : 221.0) DUTP-PYROPHOSPHATASE-LIKE 1 (DUT1); FUNCTIONS IN: hydrolase activity, dUTP diphosphatase activity; INVOLVED IN: DNA repair, 2'-deoxyribonucleotide metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DeoxyUTP pyrophosphatase domain, subfamily 1, (InterPro:IPR008181), DeoxyUTP pyrophosphatase domain (InterPro:IPR008180); Has 7764 Blast hits to 7750 proteins in 2463 species: Archae - 14; Bacteria - 4311; Metazoa - 248; Fungi - 161; Plants - 56; Viruses - 831; Other Eukaryotes - 2143 (source: NCBI BLink). & (reliability: 442.0) & (original description: no original description)","protein_coding" "Kfl00323_0170","kfl00323_0170_v1.1","Klebsormidium nitens","(at5g23240 : 148.0) DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G42750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 296.0) & (original description: no original description)","protein_coding" "Kfl00327_0060","kfl00327_0060_v1.1","Klebsormidium nitens","(at4g32700 : 819.0) Encodes a homolog of Drosophila MUS308 and mammalian DNA polymerase, which prevent spontaneous or DNA damage-induced production of DNA double strand breaks. Two conserved functional domains: an N-terminal superfamily II DNA/RNA helicase domain and a C-terminal prokaryotic-type DNA polymerase I domain. Required for regulated cell division and differentiation in meristems. Mutant plants show morphological defects, such as short roots, serrated leaves, and fasciation, as well as defective patterns of cell division and differentiation in the meristem. Mutant plants had 2.5 to 4.5-fold higher expression of ATGR1, ATBRCA1 and RAD51 genes. TEB is required for normal progression of DNA replication and for correct expression of genes during development.; helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding; FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of gene expression, DNA replication, DNA recombination, photomorphogenesis; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA-directed DNA polymerase, family A, palm domain (InterPro:IPR001098), DNA/RNA helicase, C-terminal (InterPro:IPR001650), DNA polymerase A domain (InterPro:IPR002298), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT2G42270.1); Has 17628 Blast hits to 16579 proteins in 2941 species: Archae - 600; Bacteria - 7507; Metazoa - 1254; Fungi - 1190; Plants - 590; Viruses - 412; Other Eukaryotes - 6075 (source: NCBI BLink). & (reliability: 1638.0) & (original description: no original description)","protein_coding" "Kfl00330_0070","kfl00330_0070_v1.1","Klebsormidium nitens","(o23787|thi4_citsi : 475.0) Thiazole biosynthetic enzyme, chloroplast precursor - Citrus sinensis (Sweet orange) & (at5g54770 : 471.0) Encodes a thiamine biosynthetic gene that has a dual function in thiamine biosynthesis and mitochondrial DNA damage tolerance. It appears to be involved in producing the thiazole portion of thiamine (vitamin B1). A crystal structure of the protein reveals that it forms a 2-ring homo-octamer.; THI1; FUNCTIONS IN: protein homodimerization activity, zinc ion binding; INVOLVED IN: oxazole or thiazole biosynthetic process, response to cold, thiamin biosynthetic process, response to DNA damage stimulus; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine biosynthesis Thi4 protein (InterPro:IPR002922); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 942.0) & (original description: no original description)","protein_coding" "Kfl00334_0090","kfl00334_0090_v1.1","Klebsormidium nitens","(at3g48160 : 187.0) E2F-like protein, an inhibitor of the endocycle, preserves the mitotic state of proliferating cells by suppressing transcription of genes that are required for cells to enter the DNA endoreduplication cycle.; DP-E2F-like 1 (DEL1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: DP-E2F-like protein 3 (TAIR:AT3G01330.1); Has 1182 Blast hits to 869 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 722; Fungi - 9; Plants - 301; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). & (reliability: 374.0) & (original description: no original description)","protein_coding" "Kfl00336_0090","kfl00336_0090_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00340_0020","kfl00340_0020_v1.1","Klebsormidium nitens","(at4g33680 : 587.0) Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on chr 4 between L23H3 and nga1139.; ABERRANT GROWTH AND DEATH 2 (AGD2); FUNCTIONS IN: transaminase activity, copper ion binding, L,L-diaminopimelate aminotransferase activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: LL-diaminopimelate aminotransferase, plant-related (InterPro:IPR019942), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: AGD2-like defense response protein 1 (TAIR:AT2G13810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1174.0) & (original description: no original description)","protein_coding" "Kfl00348_0110","kfl00348_0110_v1.1","Klebsormidium nitens","(at2g39440 : 108.0) CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description)","protein_coding" "Kfl00349_0050","kfl00349_0050_v1.1","Klebsormidium nitens","(o48653|dpola_orysa : 1124.0) DNA polymerase alpha catalytic subunit (EC 2.7.7.7) - Oryza sativa (Rice) & (at5g67100 : 1019.0) Encodes the putative catalytic subunit of the DNA polymerase alpha. Interacts with genes involved in chromatin-mediated cellular memory. ICU2 genetically interacts with TERMINAL FLOWER2, the ortholog of HETEROCHROMATIN PROTEIN1 of animals and yeasts, and with the Polycomb group (PcG) gene CURLY LEAF. A number of regulatory genes were derepressed in the icu2-1 mutant, including genes associated with flowering time, floral meristem, and floral organ identity. Mutant has curled, involute leaves and causes early flowering.; INCURVATA2 (ICU2); FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: negative regulation of flower development, leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, family B (InterPro:IPR022762), DNA-directed DNA polymerase, family B, exonuclease domain (InterPro:IPR006133), DNA-directed DNA polymerase, family B, conserved region (InterPro:IPR006134), Zinc finger, DNA-directed DNA polymerase, family B, alpha (InterPro:IPR015088), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), DNA-directed DNA polymerase, family B, conserved site (InterPro:IPR017964), DNA-directed DNA polymerase, family B (InterPro:IPR006172), DNA-directed DNA polymerase, family B, pol2 (InterPro:IPR004578); BEST Arabidopsis thaliana protein match is: DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (TAIR:AT5G63960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 2038.0) & (original description: no original description)","protein_coding" "Kfl00349_0100","kfl00349_0100_v1.1","Klebsormidium nitens","(at3g60830 : 373.0) Encodes an actin-related protein required for normal embryogenesis, plant architecture and floral organ abscission.; actin-related protein 7 (ARP7); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1); Has 12219 Blast hits to 11995 proteins in 2504 species: Archae - 0; Bacteria - 50; Metazoa - 5224; Fungi - 3189; Plants - 1407; Viruses - 2; Other Eukaryotes - 2347 (source: NCBI BLink). & (p30173|act13_soltu : 236.0) Actin-101 - Solanum tuberosum (Potato) & (reliability: 746.0) & (original description: no original description)","protein_coding" "Kfl00358_0060","kfl00358_0060_v1.1","Klebsormidium nitens","(at3g52950 : 407.0) CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (TAIR:AT2G36500.1). & (reliability: 814.0) & (original description: no original description)","protein_coding" "Kfl00364_0060","kfl00364_0060_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00373_0040","kfl00373_0040_v1.1","Klebsormidium nitens","(q9mum5|mind_mesvi : 261.0) Putative septum site-determining protein minD - Mesostigma viride & (at5g24020 : 219.0) Encodes a Ca2+ dependent ATPase required for correct positioning of the chloroplast division apparatus. Its ATPase activity is stimulated by AtMinE1, a topological specificity factor.; MIND; FUNCTIONS IN: calcium-dependent ATPase activity, protein binding, ATPase activity, protein homodimerization activity; INVOLVED IN: chloroplast fission; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Septum site-determining protein MinD (InterPro:IPR010223), Cobyrinic acid a,c-diamide synthase (InterPro:IPR002586); BEST Arabidopsis thaliana protein match is: IND1(iron-sulfur protein required for NADH dehydrogenase)-like (TAIR:AT4G19540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 438.0) & (original description: no original description)","protein_coding" "Kfl00381_0040","kfl00381_0040_v1.1","Klebsormidium nitens","(at1g10930 : 306.0) DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination.; RECQ4A; FUNCTIONS IN: helicase activity, ATP-dependent 3'-5' DNA helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: chromosome organization, response to DNA damage stimulus, double-strand break repair via homologous recombination; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RQC domain (InterPro:IPR018982), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Helicase/RNase D C-terminal, HRDC domain (InterPro:IPR002121); BEST Arabidopsis thaliana protein match is: RECQ helicase L4B (TAIR:AT1G60930.1); Has 34923 Blast hits to 34782 proteins in 2821 species: Archae - 633; Bacteria - 21324; Metazoa - 3687; Fungi - 2728; Plants - 1606; Viruses - 18; Other Eukaryotes - 4927 (source: NCBI BLink). & (reliability: 612.0) & (original description: no original description)","protein_coding" "Kfl00392_0050","kfl00392_0050_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00394_0110","kfl00394_0110_v1.1","Klebsormidium nitens","(at2g20980 : 139.0) Similar to MCM10, which in other organism was shown to be involved in the initiation of DNA replication.; minichromosome maintenance 10 (MCM10); CONTAINS InterPro DOMAIN/s: Zinc finger, Mcm10/DnaG-type (InterPro:IPR015408); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 278.0) & (original description: no original description)","protein_coding" "Kfl00411_0100","kfl00411_0100_v1.1","Klebsormidium nitens","(at5g48600 : 1014.0) member of SMC subfamily; structural maintenance of chromosome 3 (SMC3); FUNCTIONS IN: transporter activity, ATP binding; INVOLVED IN: chromosome segregation, chromosome organization; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 2 (TAIR:AT5G62410.1). & (reliability: 2028.0) & (original description: no original description)","protein_coding" "Kfl00416_0020","kfl00416_0020_v1.1","Klebsormidium nitens","(at1g11870 : 578.0) Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.; Seryl-tRNA synthetase (SRS); FUNCTIONS IN: serine-tRNA ligase activity; INVOLVED IN: chloroplast organization, mitochondrion organization, seryl-tRNA aminoacylation, tRNA aminoacylation, ovule development; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Seryl-tRNA synthetase, class IIa, N-terminal (InterPro:IPR015866), Seryl-tRNA synthetase, class IIa (InterPro:IPR002317), Ubiquitin supergroup (InterPro:IPR019955), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Seryl-tRNA synthetase, class IIa, C-terminal (InterPro:IPR018156); BEST Arabidopsis thaliana protein match is: seryl-tRNA synthetase / serine--tRNA ligase (TAIR:AT5G27470.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (o81983|sys_helan : 223.0) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase) (SerRS) - Helianthus annuus (Common sunflower) & (reliability: 1156.0) & (original description: no original description)","protein_coding" "Kfl00418_0100","kfl00418_0100_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00419_0106","kfl00419_0106_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00422_0150","kfl00422_0150_v1.1","Klebsormidium nitens","(at1g67630 : 373.0) DNA polymerase alpha 2 (POLA2); FUNCTIONS IN: DNA binding, DNA-directed DNA polymerase activity; INVOLVED IN: DNA replication; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase alpha, subunit B N-terminal (InterPro:IPR013627), DNA polymerase alpha, subunit B (InterPro:IPR016722), DNA polymerase alpha/epsilon, subunit B (InterPro:IPR007185); Has 415 Blast hits to 412 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 140; Plants - 46; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink). & (reliability: 746.0) & (original description: no original description)","protein_coding" "Kfl00425_0030","kfl00425_0030_v1.1","Klebsormidium nitens","(at3g18370 : 142.0) ATSYTF; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT5G11100.1); Has 5534 Blast hits to 4008 proteins in 246 species: Archae - 0; Bacteria - 0; Metazoa - 3360; Fungi - 437; Plants - 1305; Viruses - 0; Other Eukaryotes - 432 (source: NCBI BLink). & (reliability: 284.0) & (original description: no original description)","protein_coding" "Kfl00431_0070","kfl00431_0070_v1.1","Klebsormidium nitens","(at5g54370 : 80.5) Late embryogenesis abundant (LEA) protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Root cap (InterPro:IPR009646); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) protein-related (TAIR:AT4G27400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 161.0) & (original description: no original description)","protein_coding" "Kfl00434_0080","kfl00434_0080_v1.1","Klebsormidium nitens","(at4g08920 : 663.0) Encodes CRY1, a flavin-type blue-light photoreceptor with ATP binding and autophosphorylation activity. Functions in perception of blue / green ratio of light. The photoreceptor may be involved in electron transport. Mutant phenotype displays a blue light-dependent inhibition of hypocotyl elongation. Photoreceptor activity requires light-induced homodimerisation of the N-terminal CNT1 domains of CRY1. Involved in blue-light induced stomatal opening. The C-terminal domain of the protein undergoes a light dependent conformational change. Also involved in response to circadian rhythm. Mutants exhibit long hypocotyl under blue light and are out of phase in their response to circadian rhythm. CRY1 is present in the nucleus and cytoplasm. Different subcellular pools of CRY1 have different functions during photomorphogenesis of Arabidopsis seedlings.; cryptochrome 1 (CRY1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cryptochrome/DNA photolyase, class 1 conserved site, C-terminal (InterPro:IPR018394), DNA photolyase, N-terminal (InterPro:IPR006050), Cryptochrome C-terminal (InterPro:IPR020978), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome, plant (InterPro:IPR014134), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: cryptochrome 2 (TAIR:AT1G04400.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p40115|phr1_sinal : 592.0) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA photolyase) (Photoreactivating enzyme) - Sinapis alba (White mustard) (Brassica hirta) & (reliability: 1326.0) & (original description: no original description)","protein_coding" "Kfl00489_0040","kfl00489_0040_v1.1","Klebsormidium nitens","(at2g21790 : 1267.0) encodes large subunit of ribonucleotide reductase involved in the production of deoxyribonucleoside triphosphates (dNTPs) for DNA replication and repair; ribonucleotide reductase 1 (RNR1); FUNCTIONS IN: ribonucleoside-diphosphate reductase activity, ATP binding; INVOLVED IN: response to cadmium ion, DNA replication, deoxyribonucleoside triphosphate biosynthetic process; LOCATED IN: ribonucleoside-diphosphate reductase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase large subunit, N-terminal (InterPro:IPR013509), Ribonucleoside-diphosphate reductase, alpha subunit (InterPro:IPR013346), ATP-cone (InterPro:IPR005144), Ribonucleotide reductase large subunit, C-terminal (InterPro:IPR000788), Ribonucleotide reductase R1 subunit, N-terminal (InterPro:IPR008926); Has 15326 Blast hits to 14804 proteins in 2790 species: Archae - 206; Bacteria - 6388; Metazoa - 177; Fungi - 215; Plants - 88; Viruses - 606; Other Eukaryotes - 7646 (source: NCBI BLink). & (reliability: 2534.0) & (original description: no original description)","protein_coding" "Kfl00497_0060","kfl00497_0060_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00502_0020","kfl00502_0020_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00523_0070","kfl00523_0070_v1.1","Klebsormidium nitens","(at5g58230 : 676.0) Encodes a WD-40 repeat containing protein that functions in chromatin assembly as part of the CAF1 and FIE complex. Mutants exhibit parthenogenetic development that includes proliferation of unfertilized endosperm and embryos. In heterozygous plants 50% of embryos abort. Of the aborted embryos the early aborted class are homozygous and the later aborting lass are heterozygotes in which the defective allele is maternally transmitted. Other phenotypes include defects in ovule morphogenesis and organ initiation,as well as increased levels of heterochromatic DNA. MSI1 is needed for the transition to flowering. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis. In the ovule, the MSI1 transcripts are accumulated at their highest level before fertilization and gradually decrease after fertilization. MSI is biallelically expressed, the paternall allele is expressed in the endosperm and embryo and is not imprinted. MSI1 forms a complex with RBR1 that is required for activation of the imprinted genes FIS2 and FWA. This activation is mediated by MSI1/RBR1 mediated repression of MET1.; MULTICOPY SUPRESSOR OF IRA1 (MSI1); FUNCTIONS IN: protein binding; INVOLVED IN: in 13 processes; LOCATED IN: nucleus, chloroplast, chromatin remodeling complex, CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone-binding protein RBBP4 (InterPro:IPR022052), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT2G16780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1352.0) & (original description: no original description)","protein_coding" "Kfl00539_0100","kfl00539_0100_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00561_0040","kfl00561_0040_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00567_0050","kfl00567_0050_v1.1","Klebsormidium nitens","(at2g14050 : 705.0) minichromosome maintenance 9 (MCM9); FUNCTIONS IN: nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA-dependent DNA replication initiation, DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT1G44900.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q43704|mcm3_maize : 258.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 1410.0) & (original description: no original description)","protein_coding" "Kfl00593_0030","kfl00593_0030_v1.1","Klebsormidium nitens","(at3g13490 : 625.0) Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype.; OVULE ABORTION 5 (OVA5); FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding, nucleic acid binding, lysine-tRNA ligase activity; INVOLVED IN: tRNA aminoacylation for protein translation, ovule development; LOCATED IN: mitochondrion, chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Lysyl-tRNA synthetase, class II (InterPro:IPR002313); BEST Arabidopsis thaliana protein match is: lysyl-tRNA synthetase 1 (TAIR:AT3G11710.1); Has 27489 Blast hits to 22097 proteins in 2943 species: Archae - 404; Bacteria - 18954; Metazoa - 615; Fungi - 809; Plants - 266; Viruses - 0; Other Eukaryotes - 6441 (source: NCBI BLink). & (q6f2u9|syk_orysa : 326.0) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) - Oryza sativa (Rice) & (reliability: 1250.0) & (original description: no original description)","protein_coding" "Kfl00608_0090","kfl00608_0090_v1.1","Klebsormidium nitens","(at5g61460 : 571.0) Encodes SMC6B (STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage.; hypersensitive to MMS, irradiation and MMC (MIM); FUNCTIONS IN: ATP binding; INVOLVED IN: double-strand break repair, sister chromatid cohesion, chromosome segregation, response to X-ray, double-strand break repair via homologous recombination; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 6A (TAIR:AT5G07660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1142.0) & (original description: no original description)","protein_coding" "Kfl00626_0050","kfl00626_0050_v1.1","Klebsormidium nitens","(at3g18524 : 1095.0) Encodes a DNA mismatch repair homolog of human MutS gene, MSH6. MSH2 is involved in maintaining genome stability and repressing recombination of mismatched heteroduplexes.There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2 has different binding specificity to different mismatches in combination with MSH3, MSH6, or MSH7.; MUTS homolog 2 (MSH2); FUNCTIONS IN: damaged DNA binding, protein binding, mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, negative regulation of reciprocal meiotic recombination; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein, MSH2 (InterPro:IPR011184); BEST Arabidopsis thaliana protein match is: homolog of DNA mismatch repair protein MSH3 (TAIR:AT4G25540.1); Has 13560 Blast hits to 13453 proteins in 2654 species: Archae - 128; Bacteria - 8942; Metazoa - 734; Fungi - 813; Plants - 457; Viruses - 3; Other Eukaryotes - 2483 (source: NCBI BLink). & (q9xgc9|msh2_maize : 1091.0) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 2190.0) & (original description: no original description)","protein_coding" "Kfl00644_0020","kfl00644_0020_v1.1","Klebsormidium nitens","(at4g14770 : 146.0) TESMIN/TSO1-like CXC 2 (TCX2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: Tesmin/TSO1-like CXC domain-containing protein (TAIR:AT3G22780.1); Has 1250 Blast hits to 741 proteins in 97 species: Archae - 0; Bacteria - 6; Metazoa - 464; Fungi - 8; Plants - 353; Viruses - 0; Other Eukaryotes - 419 (source: NCBI BLink). & (reliability: 292.0) & (original description: no original description)","protein_coding" "Kfl00647_0030","kfl00647_0030_v1.1","Klebsormidium nitens","(at2g37210 : 233.0) Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At5g11950.; lysine decarboxylase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: Putative lysine decarboxylase family protein (TAIR:AT3G53450.1). & (reliability: 452.0) & (original description: no original description)","protein_coding" "Kfl00647_0040","kfl00647_0040_v1.1","Klebsormidium nitens","(at3g48110 : 1020.0) glycine-tRNA ligase; EMBRYO-DEFECTIVE-DEVELOPMENT 1 (EDD1); FUNCTIONS IN: glycine-tRNA ligase activity; INVOLVED IN: regulation of embryonic development, glycyl-tRNA aminoacylation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal (InterPro:IPR002311), Glycyl-tRNA synthetase, class II, heterodimeric (InterPro:IPR006194), Glycyl-tRNA synthetase, class IIc, beta subunit (InterPro:IPR015944), Glycyl-tRNA synthetase, class IIc, alpha subunit (InterPro:IPR002310); Has 11308 Blast hits to 11293 proteins in 1754 species: Archae - 4; Bacteria - 6864; Metazoa - 4; Fungi - 1; Plants - 40; Viruses - 0; Other Eukaryotes - 4395 (source: NCBI BLink). & (reliability: 2040.0) & (original description: no original description)","protein_coding" "Kfl00733_0030","kfl00733_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00736_0030","kfl00736_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00759_0050","kfl00759_0050_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00765_0030","kfl00765_0030_v1.1","Klebsormidium nitens","(at1g34770 : 128.0) CONTAINS InterPro DOMAIN/s: MAGE protein (InterPro:IPR002190); Has 1274 Blast hits to 1260 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 1104; Fungi - 45; Plants - 49; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). & (reliability: 256.0) & (original description: no original description)","protein_coding" "Kfl00814_0010","kfl00814_0010_v1.1","Klebsormidium nitens","(at3g54630 : 135.0) CONTAINS InterPro DOMAIN/s: Kinetochore protein Ndc80 (InterPro:IPR005550); Has 24780 Blast hits to 15608 proteins in 1321 species: Archae - 545; Bacteria - 2969; Metazoa - 12597; Fungi - 2181; Plants - 1581; Viruses - 39; Other Eukaryotes - 4868 (source: NCBI BLink). & (reliability: 270.0) & (original description: no original description)","protein_coding" "LOC_Os01g03570","No alias","Oryza sativa","transcription factor X1, putative, expressed","protein_coding" "LOC_Os01g06430","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g16470","No alias","Oryza sativa","phosphatidylinositol kinase, putative, expressed","protein_coding" "LOC_Os01g21135","No alias","Oryza sativa","retrotransposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os01g32560","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g38380","No alias","Oryza sativa","plant protein of unknown function domain containing protein, expressed","protein_coding" "LOC_Os01g41670","No alias","Oryza sativa","G-patch domain containing protein, putative, expressed","protein_coding" "LOC_Os01g41790","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g47310","No alias","Oryza sativa","hypothetical protein","protein_coding" "LOC_Os01g50360","No alias","Oryza sativa","NAC domain containing protein, putative, expressed","protein_coding" "LOC_Os01g53210","No alias","Oryza sativa","metal transporter Nramp3, putative, expressed","protein_coding" "LOC_Os01g64500","No alias","Oryza sativa","hypothetical protein","protein_coding" "LOC_Os01g64980","No alias","Oryza sativa","ion channel DMI1, chloroplast precursor, putative, expressed","protein_coding" "LOC_Os01g67890","No alias","Oryza sativa","OsMADS96 - MADS-box family gene with M-beta type-box, expressed","protein_coding" "LOC_Os01g72510","No alias","Oryza sativa","eukaryotic aspartyl protease domain containing protein, expressed","protein_coding" "LOC_Os02g02010","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os02g03250","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os02g09120","No alias","Oryza sativa","isoleucyl-tRNA synthetase, cytoplasmic, putative, expressed","protein_coding" "LOC_Os02g09930","No alias","Oryza sativa","CSLA1 - cellulose synthase-like family A; mannan synthase, expressed","protein_coding" "LOC_Os02g15460","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os02g17180","No alias","Oryza sativa","OsFBX42 - F-box domain containing protein, expressed","protein_coding" "LOC_Os02g17560","No alias","Oryza sativa","hypothetical protein","protein_coding" "LOC_Os02g24930","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os02g26460","No alias","Oryza sativa","hAT dimerisation domain-containing protein, putative, expressed","protein_coding" "LOC_Os02g33310","No alias","Oryza sativa","OsFBD7 - F-box and FBD domain containing protein, expressed","protein_coding" "LOC_Os02g47100","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os02g52920","No alias","Oryza sativa","emp24/gp25L/p24 family protein, putative, expressed","protein_coding" "LOC_Os03g21770","No alias","Oryza sativa","phosphoenolpyruvate carboxylase kinase, putative, expressed","protein_coding" "LOC_Os03g38480","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os03g42870","No alias","Oryza sativa","hypothetical protein","protein_coding" "LOC_Os03g44190","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os03g53920","No alias","Oryza sativa","kinesin motor domain containing protein, putative, expressed","protein_coding" "LOC_Os03g56100","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os03g58870","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os03g64260","No alias","Oryza sativa","AP2 domain containing protein, expressed","protein_coding" "LOC_Os04g06910","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os04g29280","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os04g35739","No alias","Oryza sativa","retrotransposon protein, putative, Ty1-copia subclass, expressed","protein_coding" "LOC_Os04g38350","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os04g42650","No alias","Oryza sativa","plant protein of unknown function domain containing protein, expressed","protein_coding" "LOC_Os04g50208","No alias","Oryza sativa","phosphoenolpyruvate carboxykinase, putative, expressed","protein_coding" "LOC_Os05g13350","No alias","Oryza sativa","hypothetical protein","protein_coding" "LOC_Os05g15930","No alias","Oryza sativa","transposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os05g25370","No alias","Oryza sativa","TKL_IRAK_CrRLK1L-1.2 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed","protein_coding" "LOC_Os05g28170","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os05g29010","No alias","Oryza sativa","POLA4 - Putative DNA polymerase alpha complex subunit, expressed","protein_coding" "LOC_Os05g31510","No alias","Oryza sativa","transposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os05g37670","No alias","Oryza sativa","retrotransposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os05g40850","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os06g01280","No alias","Oryza sativa","retrotransposon protein, putative, unclassified","protein_coding" "LOC_Os06g04950","No alias","Oryza sativa","early nodulin 93 ENOD93 protein, putative, expressed","protein_coding" "LOC_Os06g08790","No alias","Oryza sativa","ORC1 - Putative origin recognition complex subunit 1, expressed","protein_coding" "LOC_Os06g10980","No alias","Oryza sativa","xyloglucan fucosyltransferase, putative, expressed","protein_coding" "LOC_Os06g22260","No alias","Oryza sativa","conserved hypothetical protein","protein_coding" "LOC_Os06g39400","No alias","Oryza sativa","retrotransposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os06g40230","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os06g44760","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os07g05500","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os07g09900","No alias","Oryza sativa","disease resistance protein RPM1, putative, expressed","protein_coding" "LOC_Os07g10580","No alias","Oryza sativa","PROLM26 - Prolamin precursor, expressed","protein_coding" "LOC_Os07g18960","No alias","Oryza sativa","GCRP14 - Glycine and cysteine rich family protein precursor, putative, expressed","protein_coding" "LOC_Os07g22400","No alias","Oryza sativa","POLA3 - Putative DNA polymerase alpha complex subunit, expressed","protein_coding" "LOC_Os07g31010","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os07g33610","No alias","Oryza sativa","cytochrome P450, putative, expressed","protein_coding" "LOC_Os07g40460","No alias","Oryza sativa","prefoldin, putative, expressed","protein_coding" "LOC_Os07g45150","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os08g07820","No alias","Oryza sativa","hypothetical protein","protein_coding" "LOC_Os08g08790","No alias","Oryza sativa","ubiquitin family protein, putative, expressed","protein_coding" "LOC_Os08g08860","No alias","Oryza sativa","CRS2-associated factor 2, mitochondrial precursor, putative, expressed","protein_coding" "LOC_Os08g10620","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os08g13740","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os08g32130","No alias","Oryza sativa","heat shock protein DnaJ, putative, expressed","protein_coding" "LOC_Os09g08610","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os09g20040","No alias","Oryza sativa","resistance-like protein I2GA-SH194-2, putative, expressed","protein_coding" "LOC_Os09g21510","No alias","Oryza sativa","STE_MEKK_ste11_MAP3K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed","protein_coding" "LOC_Os10g01570","No alias","Oryza sativa","C-5 cytosine-specific DNA methylase, putative, expressed","protein_coding" "LOC_Os10g05440","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os10g06090","No alias","Oryza sativa","OsWAK104 - OsWAK receptor-like protein kinase, expressed","protein_coding" "LOC_Os10g06680","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os10g25990","No alias","Oryza sativa","retrotransposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os10g35080","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os10g37370","No alias","Oryza sativa","retrotransposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os10g40440","No alias","Oryza sativa","LTPL140 - Protease inhibitor/seed storage/LTP family protein precursor, expressed","protein_coding" "LOC_Os10g41040","No alias","Oryza sativa","ternary complex factor MIP1, putative, expressed","protein_coding" "LOC_Os11g04267","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os11g04530","No alias","Oryza sativa","sulfotransferase domain containing protein, expressed","protein_coding" "LOC_Os11g05170","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os11g07450","No alias","Oryza sativa","zinc finger, C3HC4 type domain containing protein, expressed","protein_coding" "LOC_Os11g09510","No alias","Oryza sativa","OsFBX403 - F-box domain containing protein, expressed","protein_coding" "LOC_Os11g13560","No alias","Oryza sativa","serpin domain containing protein, putative, expressed","protein_coding" "LOC_Os11g18930","No alias","Oryza sativa","hypothetical protein","protein_coding" "LOC_Os11g24750","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os11g27940","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os11g32650","No alias","Oryza sativa","chalcone synthase, putative, expressed","protein_coding" "LOC_Os11g39100","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os12g05220","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os12g06790","No alias","Oryza sativa","hypothetical protein","protein_coding" "LOC_Os12g23100","No alias","Oryza sativa","retrotransposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os12g25470","No alias","Oryza sativa","hypothetical protein","protein_coding" "LOC_Os12g42340","No alias","Oryza sativa","OsFBX464 - F-box domain containing protein, expressed","protein_coding" "MA_10426064g0010","No alias","Picea abies","(at4g01130 : 223.0) GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G26430.1); Has 3308 Blast hits to 3260 proteins in 151 species: Archae - 0; Bacteria - 130; Metazoa - 0; Fungi - 52; Plants - 3122; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). & (q7y1x1|est_hevbr : 184.0) Esterase precursor (EC 3.1.1.-) (Early nodule-specific protein homolog) (Latex allergen Hev b 13) - Hevea brasiliensis (Para rubber tree) & (reliability: 446.0) & (original description: no original description)","protein_coding" "MA_10426237g0010","No alias","Picea abies","(at4g02060 : 1090.0) Member of the minichromosome maintenance complex, involved in DNA replication initiation. Abundant in proliferating and endocycling tissues. Localized in the nucleus during G1, S and G2 phases of the cell cycle, and are released into the cytoplasmic compartment during mitosis. Binds chromatin.; PROLIFERA (PRL); CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), ATPase, AAA+ type, core (InterPro:IPR003593), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 7 (InterPro:IPR008050); BEST Arabidopsis thaliana protein match is: minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT5G44635.1). & (q43704|mcm3_maize : 281.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 2180.0) & (original description: no original description)","protein_coding" "MA_10431686g0010","No alias","Picea abies","(at1g18090 : 401.0) 5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974), XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G29630.2); Has 2139 Blast hits to 2052 proteins in 399 species: Archae - 267; Bacteria - 71; Metazoa - 522; Fungi - 572; Plants - 187; Viruses - 16; Other Eukaryotes - 504 (source: NCBI BLink). & (q9sxq6|fen1a_orysa : 94.0) Flap endonuclease 1a (EC 3.1.-.-) (OsFEN-1a) - Oryza sativa (Rice) & (reliability: 802.0) & (original description: no original description)","protein_coding" "MA_10436275g0010","No alias","Picea abies","(at4g05190 : 746.0) ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts.; kinesin 5 (ATK5); FUNCTIONS IN: microtubule motor activity; INVOLVED IN: spindle assembly, microtubule cytoskeleton organization; LOCATED IN: spindle microtubule, nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin 1 (TAIR:AT4G21270.1); Has 92441 Blast hits to 53030 proteins in 2518 species: Archae - 977; Bacteria - 10764; Metazoa - 46004; Fungi - 8189; Plants - 5583; Viruses - 252; Other Eukaryotes - 20672 (source: NCBI BLink). & (p46869|fla10_chlre : 208.0) Kinesin-like protein FLA10 (Protein KHP1) - Chlamydomonas reinhardtii & (reliability: 1492.0) & (original description: no original description)","protein_coding" "MA_112539g0010","No alias","Picea abies","(at1g26840 : 306.0) Origin Recognition Complex subunit 6. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors.; origin recognition complex protein 6 (ORC6); FUNCTIONS IN: DNA binding; INVOLVED IN: DNA replication; LOCATED IN: origin recognition complex; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Origin recognition complex, subunit 6, metazoa/plant (InterPro:IPR020529), Origin recognition complex, subunit 6 (InterPro:IPR008721); Has 179 Blast hits to 179 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 105; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). & (reliability: 612.0) & (original description: no original description)","protein_coding" "MA_128880g0010","No alias","Picea abies","(at1g60750 : 226.0) NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: oxidation reduction; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395), Aldo/keto reductase subgroup (InterPro:IPR020471); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G60730.1); Has 31420 Blast hits to 31397 proteins in 2613 species: Archae - 665; Bacteria - 20768; Metazoa - 1940; Fungi - 2451; Plants - 1336; Viruses - 0; Other Eukaryotes - 4260 (source: NCBI BLink). & (p40691|a115_tobac : 224.0) Auxin-induced protein PCNT115 - Nicotiana tabacum (Common tobacco) & (reliability: 452.0) & (original description: no original description)","protein_coding" "MA_15713g0010","No alias","Picea abies","(at5g44635 : 1125.0) MINICHROMOSOME MAINTENANCE 6 (MCM6); FUNCTIONS IN: DNA-dependent ATPase activity, DNA binding, ATP binding; INVOLVED IN: cell proliferation, DNA-dependent DNA replication initiation, DNA unwinding involved in replication; LOCATED IN: nuclear chromatin; EXPRESSED IN: shoot apex; EXPRESSED DURING: IL.00 inflorescence just visible; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA-dependent ATPase MCM (InterPro:IPR001208), DNA-dependent ATPase MCM, conserved site (InterPro:IPR018525), MCM protein 6 (InterPro:IPR008049); BEST Arabidopsis thaliana protein match is: Minichromosome maintenance (MCM2/3/5) family protein (TAIR:AT2G16440.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q43704|mcm3_maize : 288.0) DNA replication licensing factor MCM3 homolog (Replication origin activator) (ROA protein) (Fragment) - Zea mays (Maize) & (reliability: 2250.0) & (original description: no original description)","protein_coding" "MA_158556g0010","No alias","Picea abies","(at2g21790 : 1386.0) encodes large subunit of ribonucleotide reductase involved in the production of deoxyribonucleoside triphosphates (dNTPs) for DNA replication and repair; ribonucleotide reductase 1 (RNR1); FUNCTIONS IN: ribonucleoside-diphosphate reductase activity, ATP binding; INVOLVED IN: response to cadmium ion, DNA replication, deoxyribonucleoside triphosphate biosynthetic process; LOCATED IN: ribonucleoside-diphosphate reductase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase large subunit, N-terminal (InterPro:IPR013509), Ribonucleoside-diphosphate reductase, alpha subunit (InterPro:IPR013346), ATP-cone (InterPro:IPR005144), Ribonucleotide reductase large subunit, C-terminal (InterPro:IPR000788), Ribonucleotide reductase R1 subunit, N-terminal (InterPro:IPR008926); Has 15326 Blast hits to 14804 proteins in 2790 species: Archae - 206; Bacteria - 6388; Metazoa - 177; Fungi - 215; Plants - 88; Viruses - 606; Other Eukaryotes - 7646 (source: NCBI BLink). & (reliability: 2772.0) & (original description: no original description)","protein_coding" "MA_161013g0010","No alias","Picea abies","(at1g76160 : 735.0) SKU5 similar 5 (sks5); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5-similar 6 (TAIR:AT1G41830.1); Has 5094 Blast hits to 5026 proteins in 887 species: Archae - 12; Bacteria - 1432; Metazoa - 265; Fungi - 1965; Plants - 1269; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink). & (q00624|aso_brana : 629.0) L-ascorbate oxidase homolog precursor (EC 1.10.3.3) (Ascorbase) - Brassica napus (Rape) & (reliability: 1446.0) & (original description: no original description)","protein_coding" "MA_16730g0010","No alias","Picea abies","(at5g38110 : 272.0) This gene is predicted to encode a silencing group A protein. Plant lines expressing RNAi constructs directed against SGA1 have reduced levels of agrobacterium-mediated root transformation.; anti- silencing function 1b (ASF1B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: DNA mediated transformation, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Histone chaperone, ASF1-like (InterPro:IPR006818); BEST Arabidopsis thaliana protein match is: ASF1 like histone chaperone (TAIR:AT1G66740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 544.0) & (original description: no original description)","protein_coding" "MA_185953g0010","No alias","Picea abies","(at4g31890 : 355.0) ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G25130.1). & (q64ha9|spl11_orysa : 127.0) Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11) - Oryza sativa (Rice) & (reliability: 710.0) & (original description: no original description)","protein_coding" "MA_187851g0010","No alias","Picea abies","(at4g21070 : 105.0) Encodes AtBRCA1, an ortholog of the human breast cancer susceptibility gene 1. Contains one N-terminal RING finger, two C-terminal BRCT and the p300/CBP interacting domain. Strongly induced by gamma rays, consistent with a putative role in DNA repair and in cell cycle control.; breast cancer susceptibility1 (BRCA1); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: DNA repair, response to gamma radiation; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), BRCA1 (InterPro:IPR011364), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: breast cancer associated RING 1 (TAIR:AT1G04020.2); Has 8999 Blast hits to 8407 proteins in 1134 species: Archae - 0; Bacteria - 191; Metazoa - 6557; Fungi - 520; Plants - 721; Viruses - 32; Other Eukaryotes - 978 (source: NCBI BLink). & (reliability: 210.0) & (original description: no original description)","protein_coding" "MA_20109g0010","No alias","Picea abies","(at2g35880 : 125.0) TPX2 (targeting protein for Xklp2) protein family; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT4G32330.3); Has 16554 Blast hits to 10282 proteins in 807 species: Archae - 18; Bacteria - 1410; Metazoa - 6904; Fungi - 1967; Plants - 895; Viruses - 63; Other Eukaryotes - 5297 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description)","protein_coding" "MA_2814g0010","No alias","Picea abies","(at3g48160 : 246.0) E2F-like protein, an inhibitor of the endocycle, preserves the mitotic state of proliferating cells by suppressing transcription of genes that are required for cells to enter the DNA endoreduplication cycle.; DP-E2F-like 1 (DEL1); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: DP-E2F-like protein 3 (TAIR:AT3G01330.1); Has 1182 Blast hits to 869 proteins in 113 species: Archae - 0; Bacteria - 0; Metazoa - 722; Fungi - 9; Plants - 301; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). & (reliability: 492.0) & (original description: no original description)","protein_coding" "MA_40566g0010","No alias","Picea abies","(at3g01750 : 362.0) Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT3G04140.1); Has 30372 Blast hits to 15038 proteins in 745 species: Archae - 53; Bacteria - 2422; Metazoa - 15116; Fungi - 2165; Plants - 2906; Viruses - 97; Other Eukaryotes - 7613 (source: NCBI BLink). & (reliability: 724.0) & (original description: no original description)","protein_coding" "MA_42406g0010","No alias","Picea abies","(at5g66750 : 700.0) Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1 shows some resistance to agrobacterium-mediated root transformation.; chromatin remodeling 1 (CHR1); FUNCTIONS IN: helicase activity, ATPase activity; INVOLVED IN: methylation-dependent chromatin silencing, DNA mediated transformation, transposition, RNA-mediated; LOCATED IN: nucleosome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 376.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1400.0) & (original description: no original description)","protein_coding" "MA_55336g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding" "MA_6800g0010","No alias","Picea abies","(at5g23400 : 340.0) Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction, defense response; LOCATED IN: cell wall; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT2G26380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p93194|rpk1_iponi : 174.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 680.0) & (original description: no original description)","protein_coding" "MA_740280g0010","No alias","Picea abies","(at1g65690 : 184.0) Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: NDR1/HIN1-like 25 (TAIR:AT5G36970.1); Has 985 Blast hits to 984 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 985; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 362.0) & (original description: no original description)","protein_coding" "MA_7952g0010","No alias","Picea abies","(at5g41880 : 569.0) POLA3; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer, DNA replication; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, small subunit (InterPro:IPR002755), DNA primase, small subunit, eukaryotic/archaeal (InterPro:IPR014052); Has 510 Blast hits to 504 proteins in 249 species: Archae - 95; Bacteria - 0; Metazoa - 124; Fungi - 138; Plants - 44; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink). & (reliability: 1138.0) & (original description: no original description)","protein_coding" "MA_83167g0010","No alias","Picea abies","(at5g19320 : 496.0) Encodes RAN GTPase activating protein 2. The protein is localized to the nuclear envelope during interphase.; RAN GTPase activating protein 2 (RANGAP2); FUNCTIONS IN: RAN GTPase activator activity; INVOLVED IN: response to salt stress, nucleocytoplasmic transport; LOCATED IN: nuclear envelope, endoplasmic reticulum, plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RAN GTPase activating protein 1 (TAIR:AT3G63130.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 992.0) & (original description: no original description)","protein_coding" "MA_86565g0010","No alias","Picea abies","(at5g23420 : 100.0) Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.; high-mobility group box 6 (HMGB6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages. & (reliability: 200.0) & (original description: no original description)","protein_coding" "MA_8789384g0010","No alias","Picea abies","(at1g21450 : 212.0) Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family.; SCARECROW-like 1 (SCL1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT5G48150.2); Has 2480 Blast hits to 2441 proteins in 303 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2475; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (q8gve1|cigr2_orysa : 181.0) Chitin-inducible gibberellin-responsive protein 2 - Oryza sativa (Rice) & (reliability: 424.0) & (original description: no original description)","protein_coding" "MA_91393g0010","No alias","Picea abies","(at3g54650 : 400.0) FBL17; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: generative cell mitosis, seed development, embryo development, ubiquitin-dependent protein catabolic process, pollen development; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); Has 1738 Blast hits to 1195 proteins in 149 species: Archae - 0; Bacteria - 27; Metazoa - 733; Fungi - 89; Plants - 663; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink). & (reliability: 800.0) & (original description: no original description)","protein_coding" "MA_9211200g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding" "MA_938993g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding" "Mp1g03120.1","No alias","Marchantia polymorpha","subunit alpha of tryptophan synthase complex","protein_coding" "Mp1g03430.1","No alias","Marchantia polymorpha","component RRP45 of exosome EXO9 core complex","protein_coding" "Mp1g20310.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp1g23100.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp1g25150.1","No alias","Marchantia polymorpha","primase component POLA4 of DNA polymerase alpha complex","protein_coding" "Mp1g28850.1","No alias","Marchantia polymorpha","Protein CPR-5 OS=Arabidopsis thaliana (sp|q9lv85|cpr5_arath : 118.0)","protein_coding" "Mp2g11680.1","No alias","Marchantia polymorpha","component NPL4 of NPL4-UFD1 heterodimer","protein_coding" "Mp3g13140.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp3g19760.1","No alias","Marchantia polymorpha","component THOC3/Tex1 of mRNP trafficking THO subcomplex","protein_coding" "Mp4g02430.1","No alias","Marchantia polymorpha","component MCM9 of MCM8-9 cell cycle auxiliary complex","protein_coding" "Mp4g21540.1","No alias","Marchantia polymorpha","Histone-binding protein MSI1 homolog OS=Oryza sativa subsp. japonica (sp|q10g81|msi1_orysj : 139.0)","protein_coding" "Mp5g00380.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp5g08290.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp5g18590.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp6g10790.1","No alias","Marchantia polymorpha","protein factor PRPF6/PRP1/STA1 of U5 small nuclear ribonucleoprotein particle (snRNP)","protein_coding" "Mp6g12670.1","No alias","Marchantia polymorpha","small component SAE1 of SUMO activating E1 complex","protein_coding" "Mp6g20020.1","No alias","Marchantia polymorpha","class II/ASH1 histone methyltransferase component of histone lysine methylation/demethylation","protein_coding" "Mp6g20090.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp7g02800.1","No alias","Marchantia polymorpha","Probable protein phosphatase 2C 11 OS=Arabidopsis thaliana (sp|q8vzn9|p2c11_arath : 142.0)","protein_coding" "Mp7g15030.1","No alias","Marchantia polymorpha","basal transcription factor (Sigma)","protein_coding" "Mp7g17480.1","No alias","Marchantia polymorpha","primase component POLA3 of DNA polymerase alpha complex","protein_coding" "Mp8g17790.1","No alias","Marchantia polymorpha","cation antiporter (CAX)","protein_coding" "Potri.003G104700","No alias","Populus trichocarpa","DNA primases;DNA primases","protein_coding" "Potri.003G169300","No alias","Populus trichocarpa","DNA primase, large subunit family","protein_coding" "Potri.017G053800","No alias","Populus trichocarpa","DNA primase, large subunit family","protein_coding" "Pp1s10_39V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s113_204V6","No alias","Physcomitrella patens","1-acylglycerophosphocholine o-","protein_coding" "Pp1s114_181V6","No alias","Physcomitrella patens","poly (adp-ribose) polymerase member 1","protein_coding" "Pp1s117_83V6","No alias","Physcomitrella patens","F14G9.10; CwfJ-like family protein [Arabidopsis thaliana]","protein_coding" "Pp1s127_27V6","No alias","Physcomitrella patens","T31K7.3; expressed protein [Arabidopsis thaliana]","protein_coding" "Pp1s138_179V6","No alias","Physcomitrella patens","gamma tubulin ring protein","protein_coding" "Pp1s13_142V6","No alias","Physcomitrella patens","trytophan synthase alpha","protein_coding" "Pp1s149_37V6","No alias","Physcomitrella patens","dicer-like 4","protein_coding" "Pp1s149_72V6","No alias","Physcomitrella patens","ap-1 complex subunit gamma-","protein_coding" "Pp1s156_164V6","No alias","Physcomitrella patens","f-box and domain","protein_coding" "Pp1s158_158V6","No alias","Physcomitrella patens","fca protein","protein_coding" "Pp1s15_172V6","No alias","Physcomitrella patens","nucleic acid binding","protein_coding" "Pp1s165_51V6","No alias","Physcomitrella patens","Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) [Arabidopsis thaliana]","protein_coding" "Pp1s16_385V6","No alias","Physcomitrella patens","pantoate--beta-alanine ligase","protein_coding" "Pp1s171_139V6","No alias","Physcomitrella patens","major facilitator superfamilyexpressed","protein_coding" "Pp1s172_91V6","No alias","Physcomitrella patens","prolyl 4-hydroxylase alpha","protein_coding" "Pp1s173_41V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s17_154V6","No alias","Physcomitrella patens","chaperone protein dnaj chloroplast","protein_coding" "Pp1s185_87V6","No alias","Physcomitrella patens","xyloglucan 6-","protein_coding" "Pp1s199_47V6","No alias","Physcomitrella patens","kinesin-like calmodulin binding protein","protein_coding" "Pp1s214_72V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s227_17V6","No alias","Physcomitrella patens","F4P9.34; expressed protein [Arabidopsis thaliana]","protein_coding" "Pp1s234_102V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s238_55V6","No alias","Physcomitrella patens","proteophosphoglycan ppg1 [Leishmania major]","protein_coding" "Pp1s242_2V6","No alias","Physcomitrella patens","MSL1.13; zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]","protein_coding" "Pp1s257_84V6","No alias","Physcomitrella patens","structural constituent of","protein_coding" "Pp1s28_195V6","No alias","Physcomitrella patens","proteophosphoglycan ppg1 [Leishmania major]","protein_coding" "Pp1s29_54V6","No alias","Physcomitrella patens","chaperonin containingsubunit 7","protein_coding" "Pp1s2_650V6","No alias","Physcomitrella patens","hypothetical protein [Dictyostelium discoideum]","protein_coding" "Pp1s305_5V6","No alias","Physcomitrella patens","T23K3.5; pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]","protein_coding" "Pp1s307_72V6","No alias","Physcomitrella patens","radical sam cfr family","protein_coding" "Pp1s30_299V6","No alias","Physcomitrella patens","solute carrier family 35 member b1","protein_coding" "Pp1s322_13V6","No alias","Physcomitrella patens","ubiquitin-activating enzyme e1 1","protein_coding" "Pp1s326_15V6","No alias","Physcomitrella patens","T5I7.16; expressed protein [Arabidopsis thaliana]","protein_coding" "Pp1s35_350V6","No alias","Physcomitrella patens","pentatricopeptide repeat-containing","protein_coding" "Pp1s371_24V6","No alias","Physcomitrella patens","F26K10.90; expressed protein [Arabidopsis thaliana]","protein_coding" "Pp1s39_197V6","No alias","Physcomitrella patens","eukaryotic translation initiation factor 4e","protein_coding" "Pp1s409_47V6","No alias","Physcomitrella patens","F4B14.120; pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]","protein_coding" "Pp1s41_68V6","No alias","Physcomitrella patens","cold-shock dna binding protein","protein_coding" "Pp1s42_88V6","No alias","Physcomitrella patens","T9L3.90; expressed protein [Arabidopsis thaliana]","protein_coding" "Pp1s434_20V6","No alias","Physcomitrella patens","dna primase polypeptide 2","protein_coding" "Pp1s491_9V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s52_58V6","No alias","Physcomitrella patens","gamma complex associated protein 5","protein_coding" "Pp1s57_94V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s61_10V6","No alias","Physcomitrella patens","3-hydroxy-3-methylglutaryl coenzyme a reductase","protein_coding" "Pp1s6_193V6","No alias","Physcomitrella patens","yod1 otu deubiquinating enzyme 1 homolog","protein_coding" "Pp1s6_474V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s6_61V6","No alias","Physcomitrella patens","f-box and wd40 domain","protein_coding" "Pp1s70_86V6","No alias","Physcomitrella patens","T7B11.33; expressed protein [Arabidopsis thaliana]","protein_coding" "Pp1s72_198V6","No alias","Physcomitrella patens","acting on acid in phosphorus-containing anhydrides nucleic acid binding zinc ion binding","protein_coding" "Pp1s74_183V6","No alias","Physcomitrella patens","dienelactone hydrolase","protein_coding" "Pp1s77_54V6","No alias","Physcomitrella patens","protein disulfide","protein_coding" "Pp1s78_33V6","No alias","Physcomitrella patens","bcas2 protein","protein_coding" "Pp1s7_39V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s82_161V6","No alias","Physcomitrella patens","agenet domain containing expressed","protein_coding" "Pp1s83_243V6","No alias","Physcomitrella patens","PREDICTED: hypothetical protein [Vitis vinifera]","protein_coding" "Pp1s87_171V6","No alias","Physcomitrella patens","atp-dependent rna helicase dhh1","protein_coding" "Pp1s90_95V6","No alias","Physcomitrella patens","polypeptide 49kda","protein_coding" "Pp1s92_5V6","No alias","Physcomitrella patens","F13K23.16; flower pigmentation protein (AN11) [Arabidopsis thaliana]","protein_coding" "Pp1s97_281V6","No alias","Physcomitrella patens","PREDICTED: hypothetical protein [Vitis vinifera]","protein_coding" "Pp1s98_229V6","No alias","Physcomitrella patens","F8A24.7; serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B' (B'beta) [Arabidopsis thaliana]","protein_coding" "Pp1s9_30V6","No alias","Physcomitrella patens","F21P24.22; expressed protein [Arabidopsis thaliana]","protein_coding" "PSME_00000261-RA","No alias","Pseudotsuga menziesii","(at1g67320 : 561.0) DNA primase, large subunit family; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, large subunit, eukaryotic (InterPro:IPR016558), DNA primase, large subunit, eukaryotic/archaeal (InterPro:IPR007238). & (reliability: 1122.0) & (original description: no original description)","protein_coding" "PSME_00000799-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00002372-RA","No alias","Pseudotsuga menziesii","(at3g57060 : 1269.0) binding; FUNCTIONS IN: binding; INVOLVED IN: mitosis, chromosome condensation; LOCATED IN: nucleus, condensin complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Non-SMC condensin subunit, XCAP-D2/Cnd1 (InterPro:IPR007673), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT4G15890.1). & (reliability: 2538.0) & (original description: no original description)","protein_coding" "PSME_00004881-RA","No alias","Pseudotsuga menziesii","(at4g19810 : 289.0) Glycosyl hydrolase family protein with chitinase insertion domain; FUNCTIONS IN: cation binding, chitinase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cell wall; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 18, catalytic domain (InterPro:IPR001223), Chitinase II (InterPro:IPR011583), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein with chitinase insertion domain (TAIR:AT4G19820.1); Has 6461 Blast hits to 6286 proteins in 1137 species: Archae - 29; Bacteria - 2687; Metazoa - 1798; Fungi - 1311; Plants - 165; Viruses - 109; Other Eukaryotes - 362 (source: NCBI BLink). & (reliability: 578.0) & (original description: no original description)","protein_coding" "PSME_00005271-RA","No alias","Pseudotsuga menziesii","(at1g78230 : 168.0) Outer arm dynein light chain 1 protein; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT4G03260.2); Has 24271 Blast hits to 14439 proteins in 747 species: Archae - 6; Bacteria - 9514; Metazoa - 8699; Fungi - 1002; Plants - 3127; Viruses - 44; Other Eukaryotes - 1879 (source: NCBI BLink). & (reliability: 336.0) & (original description: no original description)","protein_coding" "PSME_00005953-RA","No alias","Pseudotsuga menziesii","(p34899|glym_pea : 314.0) Serine hydroxymethyltransferase, mitochondrial precursor (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) - Pisum sativum (Garden pea) & (at4g37930 : 306.0) Encodes a protein with mitochondrial serine hydroxymethyltransferase activity, which functions in the photorespiratory pathway, catalyzes the conversion of serine and tetrahydrofolate to glycine and 5,10-methylene tetrahydrofolate. Involved in controlling cell damage caused by abiotic stress, such as high light and salt and the hypersensitive defense response of plants.; serine transhydroxymethyltransferase 1 (SHM1); FUNCTIONS IN: poly(U) RNA binding, glycine hydroxymethyltransferase activity; INVOLVED IN: in 8 processes; LOCATED IN: in 9 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: serine hydroxymethyltransferase 2 (TAIR:AT5G26780.1); Has 11621 Blast hits to 11596 proteins in 2825 species: Archae - 258; Bacteria - 6371; Metazoa - 337; Fungi - 287; Plants - 346; Viruses - 6; Other Eukaryotes - 4016 (source: NCBI BLink). & (reliability: 612.0) & (original description: no original description)","protein_coding" "PSME_00006632-RA","No alias","Pseudotsuga menziesii","(q9xg99|kprs2_spiol : 184.0) Ribose-phosphate pyrophosphokinase 2, chloroplast precursor (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 2) - Spinacia oleracea (Spinach) & (at2g44530 : 181.0) Phosphoribosyltransferase family protein; FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: phosphoribosyl pyrophosphate (PRPP) synthase 2 (TAIR:AT1G32380.1); Has 11359 Blast hits to 11120 proteins in 2784 species: Archae - 259; Bacteria - 6102; Metazoa - 636; Fungi - 683; Plants - 217; Viruses - 13; Other Eukaryotes - 3449 (source: NCBI BLink). & (reliability: 362.0) & (original description: no original description)","protein_coding" "PSME_00007357-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00007824-RA","No alias","Pseudotsuga menziesii","(at1g09970 : 736.0) RLK7 belongs to a leucine-rich repeat class of receptor-likekinase (LRR-RLKs). It is involved in the control of germination speed and the tolerance to oxidant stress.; LRR XI-23; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid autophosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G19700.1); Has 205125 Blast hits to 136515 proteins in 4580 species: Archae - 168; Bacteria - 22290; Metazoa - 61642; Fungi - 10712; Plants - 85268; Viruses - 403; Other Eukaryotes - 24642 (source: NCBI BLink). & (p93194|rpk1_iponi : 438.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 1472.0) & (original description: no original description)","protein_coding" "PSME_00008387-RA","No alias","Pseudotsuga menziesii","(at2g28470 : 301.0) putative beta-galactosidase (BGAL8 gene); beta-galactosidase 8 (BGAL8); FUNCTIONS IN: cation binding, sugar binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35, conserved site (InterPro:IPR019801), Glycoside hydrolase, family 35 (InterPro:IPR001944), D-galactoside/L-rhamnose binding SUEL lectin (InterPro:IPR000922), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: beta galactosidase 1 (TAIR:AT3G13750.1). & (p45582|bgal_aspof : 228.0) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) - Asparagus officinalis (Garden asparagus) & (reliability: 602.0) & (original description: no original description)","protein_coding" "PSME_00008874-RA","No alias","Pseudotsuga menziesii","(at3g23890 : 1554.0) Encodes a topoisomerase II that is highly expressed in young seedlings. The protein is localized in the nucleus and gene expression levels are increased in proliferative tissues.; topoisomerase II (TOPII); CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IIA, subunit A/C-terminal (InterPro:IPR002205), DNA topoisomerase, type IIA, conserved site (InterPro:IPR018522), DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta (InterPro:IPR013758), DNA topoisomerase, type IIA, subunit B, domain 2 (InterPro:IPR013506), DNA topoisomerase, type IIA, subunit A, alpha-helical (InterPro:IPR013757), ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA topoisomerase, type IIA, subunit B/N-terminal, alpha-beta (InterPro:IPR013759), DNA topoisomerase, type IIA, subunit B/N-terminal (InterPro:IPR001241), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), DNA topoisomerase II, eukaryotic-type (InterPro:IPR001154), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), DNA topoisomerase, type IIA, central (InterPro:IPR013760); BEST Arabidopsis thaliana protein match is: DNA GYRASE B2 (TAIR:AT5G04130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (o24308|top2_pea : 1526.0) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II) (PsTopII) - Pisum sativum (Garden pea) & (reliability: 3108.0) & (original description: no original description)","protein_coding" "PSME_00009627-RA","No alias","Pseudotsuga menziesii","(at5g41880 : 250.0) POLA3; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer, DNA replication; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, small subunit (InterPro:IPR002755), DNA primase, small subunit, eukaryotic/archaeal (InterPro:IPR014052); Has 510 Blast hits to 504 proteins in 249 species: Archae - 95; Bacteria - 0; Metazoa - 124; Fungi - 138; Plants - 44; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink). & (reliability: 500.0) & (original description: no original description)","protein_coding" "PSME_00013340-RA","No alias","Pseudotsuga menziesii","(at3g58760 : 431.0) Integrin-linked protein kinase family; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: regulation of signal transduction, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Integrin-linked protein kinase (InterPro:IPR016253), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Ankyrin repeat-containing domain (InterPro:IPR020683), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Integrin-linked protein kinase family (TAIR:AT4G18950.1); Has 165609 Blast hits to 134537 proteins in 4793 species: Archae - 244; Bacteria - 16399; Metazoa - 69591; Fungi - 13531; Plants - 33415; Viruses - 845; Other Eukaryotes - 31584 (source: NCBI BLink). & (o24585|cri4_maize : 91.3) Putative receptor protein kinase CRINKLY4 precursor (EC 2.7.11.1) - Zea mays (Maize) & (reliability: 862.0) & (original description: no original description)","protein_coding" "PSME_00015366-RA","No alias","Pseudotsuga menziesii","(at5g11510 : 294.0) Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4. Functions in powdery mildew induced host endoreduplication at the site of infection.; myb domain protein 3r-4 (MYB3R-4); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Homeodomain-like protein (TAIR:AT4G32730.1); Has 13831 Blast hits to 8419 proteins in 581 species: Archae - 0; Bacteria - 44; Metazoa - 1293; Fungi - 976; Plants - 8377; Viruses - 6; Other Eukaryotes - 3135 (source: NCBI BLink). & (p93417|gam1_orysa : 123.0) Transcription factor GAMYB (OsGAMyb) - Oryza sativa (Rice) & (reliability: 588.0) & (original description: no original description)","protein_coding" "PSME_00016736-RA","No alias","Pseudotsuga menziesii","(at4g02280 : 770.0) Encodes a protein with sucrose synthase activity (SUS3). It appears to be important for sucrose metabolism in developing seeds, especially during the late maturation phase, about 18 days after flowering.; sucrose synthase 3 (SUS3); CONTAINS InterPro DOMAIN/s: Sucrose synthase, plant/cyanobacteria (InterPro:IPR012820), Sucrose synthase (InterPro:IPR000368), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: sucrose synthase 2 (TAIR:AT5G49190.1); Has 6506 Blast hits to 6505 proteins in 1621 species: Archae - 256; Bacteria - 4351; Metazoa - 95; Fungi - 50; Plants - 824; Viruses - 0; Other Eukaryotes - 930 (source: NCBI BLink). & (o24301|sus2_pea : 763.0) Sucrose synthase 2 (EC 2.4.1.13) (Sucrose-UDP glucosyltransferase 2) - Pisum sativum (Garden pea) & (reliability: 1540.0) & (original description: no original description)","protein_coding" "PSME_00016886-RA","No alias","Pseudotsuga menziesii","(at1g16210 : 230.0) unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1014 (InterPro:IPR010422); Has 16107 Blast hits to 8386 proteins in 1107 species: Archae - 26; Bacteria - 3370; Metazoa - 4013; Fungi - 1516; Plants - 526; Viruses - 120; Other Eukaryotes - 6536 (source: NCBI BLink). & (reliability: 460.0) & (original description: no original description)","protein_coding" "PSME_00020340-RA","No alias","Pseudotsuga menziesii","(at3g16630 : 245.0) Kinesin-13A localized to entire Golgi stacks. Involved in trichome development.; KINESIN-13A; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: trichome morphogenesis; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT3G16060.1); Has 9814 Blast hits to 9502 proteins in 306 species: Archae - 4; Bacteria - 2; Metazoa - 4282; Fungi - 1345; Plants - 1799; Viruses - 0; Other Eukaryotes - 2382 (source: NCBI BLink). & (p46869|fla10_chlre : 93.2) Kinesin-like protein FLA10 (Protein KHP1) - Chlamydomonas reinhardtii & (reliability: 490.0) & (original description: no original description)","protein_coding" "PSME_00022646-RA","No alias","Pseudotsuga menziesii","(at3g01060 : 489.0) unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 978.0) & (original description: no original description)","protein_coding" "PSME_00023940-RA","No alias","Pseudotsuga menziesii","(at4g02110 : 438.0) transcription coactivators; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (TAIR:AT1G67180.1); Has 6090 Blast hits to 4661 proteins in 497 species: Archae - 12; Bacteria - 945; Metazoa - 2581; Fungi - 684; Plants - 424; Viruses - 13; Other Eukaryotes - 1431 (source: NCBI BLink). & (reliability: 876.0) & (original description: no original description)","protein_coding" "PSME_00026145-RA","No alias","Pseudotsuga menziesii","(at4g05160 : 454.0) Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.; AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity, fatty-acyl-CoA synthase activity; INVOLVED IN: jasmonic acid biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: OPC-8:0 CoA ligase1 (TAIR:AT1G20510.1); Has 86858 Blast hits to 79133 proteins in 3797 species: Archae - 1159; Bacteria - 54259; Metazoa - 3570; Fungi - 4802; Plants - 2877; Viruses - 1; Other Eukaryotes - 20190 (source: NCBI BLink). & (p14912|4cl1_petcr : 238.0) 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) - Petroselinum crispum (Parsley) (Petroselinum hortense) & (reliability: 908.0) & (original description: no original description)","protein_coding" "PSME_00027596-RA","No alias","Pseudotsuga menziesii","(at1g61520 : 359.0) PSI type III chlorophyll a/b-binding protein (Lhca3*1); photosystem I light harvesting complex gene 3 (LHCA3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast thylakoid membrane, plastoglobule; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 5 (TAIR:AT1G45474.2). & (p13869|cb12_pethy : 151.0) Chlorophyll a-b binding protein, chloroplast precursor (LHCI type II CAB) - Petunia hybrida (Petunia) & (reliability: 718.0) & (original description: no original description)","protein_coding" "PSME_00028881-RA","No alias","Pseudotsuga menziesii","(at4g21770 : 349.0) Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145); Has 5935 Blast hits to 5933 proteins in 1806 species: Archae - 0; Bacteria - 4596; Metazoa - 112; Fungi - 68; Plants - 78; Viruses - 0; Other Eukaryotes - 1081 (source: NCBI BLink). & (reliability: 698.0) & (original description: no original description)","protein_coding" "PSME_00033863-RA","No alias","Pseudotsuga menziesii","(q71vm4|ima1a_orysa : 349.0) Importin alpha-1a subunit - Oryza sativa (Rice) & (at4g16143 : 334.0) Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.; importin alpha isoform 2 (IMPA-2); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Importin-alpha-like, importin-beta-binding domain (InterPro:IPR002652), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: importin alpha isoform 1 (TAIR:AT3G06720.2); Has 4654 Blast hits to 3364 proteins in 293 species: Archae - 4; Bacteria - 33; Metazoa - 1869; Fungi - 640; Plants - 1336; Viruses - 0; Other Eukaryotes - 772 (source: NCBI BLink). & (reliability: 668.0) & (original description: no original description)","protein_coding" "PSME_00034100-RA","No alias","Pseudotsuga menziesii","(at4g19050 : 107.0) NB-ARC domain-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G45510.2); Has 34356 Blast hits to 17814 proteins in 759 species: Archae - 28; Bacteria - 2387; Metazoa - 7116; Fungi - 505; Plants - 22424; Viruses - 39; Other Eukaryotes - 1857 (source: NCBI BLink). & (reliability: 194.8) & (original description: no original description)","protein_coding" "PSME_00034903-RA","No alias","Pseudotsuga menziesii","(at1g44910 : 171.0) Binds the carboxyl-terminal domain (CTD) of the largest subunit of RNA polymerase II and functions as a scaffold for RNA processing machineries.; pre-mRNA-processing protein 40A (PRP40A); CONTAINS InterPro DOMAIN/s: FF domain (InterPro:IPR002713), WW/Rsp5/WWP (InterPro:IPR001202); BEST Arabidopsis thaliana protein match is: pre-mRNA-processing protein 40B (TAIR:AT3G19670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 342.0) & (original description: no original description)","protein_coding" "PSME_00037289-RA","No alias","Pseudotsuga menziesii","(q8h3p9|hak7_orysa : 951.0) Potassium transporter 7 (OsHAK7) - Oryza sativa (Rice) & (at3g02050 : 924.0) potassium transporter KUP3p (KUP3); K+ uptake transporter 3 (KUP3); FUNCTIONS IN: potassium ion transmembrane transporter activity; INVOLVED IN: potassium ion transport, response to external stimulus; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Potassium uptake protein, kup (InterPro:IPR018519), K+ potassium transporter (InterPro:IPR003855); BEST Arabidopsis thaliana protein match is: Potassium transporter family protein (TAIR:AT4G23640.1); Has 3477 Blast hits to 3392 proteins in 1029 species: Archae - 13; Bacteria - 2401; Metazoa - 1; Fungi - 102; Plants - 838; Viruses - 4; Other Eukaryotes - 118 (source: NCBI BLink). & (reliability: 1848.0) & (original description: no original description)","protein_coding" "PSME_00043292-RA","No alias","Pseudotsuga menziesii","(at3g49810 : 168.0) ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G65920.1); Has 2157 Blast hits to 2086 proteins in 103 species: Archae - 0; Bacteria - 14; Metazoa - 79; Fungi - 29; Plants - 1932; Viruses - 3; Other Eukaryotes - 100 (source: NCBI BLink). & (reliability: 336.0) & (original description: no original description)","protein_coding" "PSME_00043873-RA","No alias","Pseudotsuga menziesii","(at1g78230 : 316.0) Outer arm dynein light chain 1 protein; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT4G03260.2); Has 24271 Blast hits to 14439 proteins in 747 species: Archae - 6; Bacteria - 9514; Metazoa - 8699; Fungi - 1002; Plants - 3127; Viruses - 44; Other Eukaryotes - 1879 (source: NCBI BLink). & (reliability: 632.0) & (original description: no original description)","protein_coding" "PSME_00044151-RA","No alias","Pseudotsuga menziesii","(at5g04360 : 182.0) Encodes an enzyme thought to be involved in the hydrolysis of the α-1,6 linkages during starch degradation in seed endosperm. However, a knockout mutant of Arabidopsis lacking limit dextrinase has normal rates of starch degradation in the leaf at night, indicating that more than one isoamylases might be involved in this process.; limit dextrinase (LDA); FUNCTIONS IN: limit dextrinase activity, pullulanase activity, alpha-amylase activity; INVOLVED IN: starch biosynthetic process, carbohydrate metabolic process, starch catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-1,6-glucosidases, pullulanase-type (InterPro:IPR011839), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: isoamylase 3 (TAIR:AT4G09020.1); Has 6260 Blast hits to 6253 proteins in 1613 species: Archae - 73; Bacteria - 5462; Metazoa - 45; Fungi - 1; Plants - 262; Viruses - 0; Other Eukaryotes - 417 (source: NCBI BLink). & (reliability: 364.0) & (original description: no original description)","protein_coding" "PSME_00050758-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00054246-RA","No alias","Pseudotsuga menziesii","(at3g53180 : 129.0) glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases; FUNCTIONS IN: glutamate-ammonia ligase activity, catalytic activity; INVOLVED IN: nitrogen compound metabolic process, N-terminal protein myristoylation, nitrogen fixation, metabolic process, glutamine biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic domain (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic domain (InterPro:IPR014746), Amidohydrolase 2 (InterPro:IPR006992); Has 14587 Blast hits to 14579 proteins in 2570 species: Archae - 338; Bacteria - 8803; Metazoa - 107; Fungi - 250; Plants - 55; Viruses - 0; Other Eukaryotes - 5034 (source: NCBI BLink). & (reliability: 258.0) & (original description: no original description)","protein_coding" "PSME_00055441-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "Seita.1G092100.1","No alias","Setaria italica ","arginine methyltransferase *(PRMT5/CAU1) & histone methylase *(CAU1/PRMT5)","protein_coding" "Seita.1G160400.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.1G189600.1","No alias","Setaria italica ","component *(RRP45) of exosome EXO9 core complex","protein_coding" "Seita.1G207100.1","No alias","Setaria italica ","histone chaperone *(NRP)","protein_coding" "Seita.1G297900.1","No alias","Setaria italica ","mTERF-type transcription factor","protein_coding" "Seita.1G301700.1","No alias","Setaria italica ","rRNA methyltransferase *(NOP2)","protein_coding" "Seita.1G302700.1","No alias","Setaria italica ","tRNA guanine-methyltransferase *(TRM10) & EC_2.1 transferase transferring one-carbon group","protein_coding" "Seita.1G341700.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.1G355000.1","No alias","Setaria italica ","component *(uS15m) of small mitoribosomal-subunit proteome","protein_coding" "Seita.1G374000.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G018800.1","No alias","Setaria italica ","histone chaperone *(NASP)","protein_coding" "Seita.2G044300.1","No alias","Setaria italica ","component *(Sm-B) of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex","protein_coding" "Seita.2G076600.1","No alias","Setaria italica ","component *(mS29) of small mitoribosomal-subunit proteome","protein_coding" "Seita.2G077000.1","No alias","Setaria italica ","SSU processome assembly factor *(RRP5)","protein_coding" "Seita.2G109900.1","No alias","Setaria italica ","RNA editing factor *(OZ)","protein_coding" "Seita.2G142600.1","No alias","Setaria italica ","ribosomal protein arginine N-methyltransferase *(PRMT3)","protein_coding" "Seita.2G210000.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G210100.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G232700.1","No alias","Setaria italica ","helicase component *(RVB) & helicase component *(RVB) of chromatin remodeling complex","protein_coding" "Seita.2G240300.1","No alias","Setaria italica ","tRNA cytidine-methyltransferase *(TRM4) & EC_2.1 transferase transferring one-carbon group","protein_coding" "Seita.2G273300.1","No alias","Setaria italica ","regulatory protein *(THAL) of rRNA transcription control","protein_coding" "Seita.2G317300.1","No alias","Setaria italica ","component *(eL15) of large ribosomal-subunit (LSU) proteome","protein_coding" "Seita.2G325600.1","No alias","Setaria italica ","pre-60S ribosomal subunit assembly factor *(NSA1)","protein_coding" "Seita.2G332500.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G382300.1","No alias","Setaria italica ","component *(mL104) of large mitoribosomal-subunit proteome & regulatory protein *(PNM1) of mitochondrial translation machinery","protein_coding" "Seita.2G417700.1","No alias","Setaria italica ","component *(uS9m) of small mitoribosomal-subunit proteome","protein_coding" "Seita.2G440400.1","No alias","Setaria italica ","LON-type protease","protein_coding" "Seita.3G039600.1","No alias","Setaria italica ","subunit zeta *(CCT6) of CCT chaperonin folding complex","protein_coding" "Seita.3G066900.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.3G082800.1","No alias","Setaria italica ","component *(MCM6) of MCM replicative DNA helicase complex","protein_coding" "Seita.3G132000.1","No alias","Setaria italica ","tRNA cytidine acetyltransferase","protein_coding" "Seita.3G143200.1","No alias","Setaria italica ","MRM2-type rRNA methyltransferase","protein_coding" "Seita.3G150300.1","No alias","Setaria italica ","component *(bL21m) of large mitoribosomal-subunit proteome","protein_coding" "Seita.3G205800.1","No alias","Setaria italica ","component *(MCM3) of MCM replicative DNA helicase complex","protein_coding" "Seita.3G265700.1","No alias","Setaria italica ","aminoacyl-tRNA binding factor *(eEF1A))","protein_coding" "Seita.3G273400.1","No alias","Setaria italica ","primase component *(POLA4) of DNA polymerase alpha complex","protein_coding" "Seita.3G322400.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.3G335500.1","No alias","Setaria italica ","component *(MCM7) of MCM replicative DNA helicase complex","protein_coding" "Seita.3G347100.1","No alias","Setaria italica ","component *(NRPA7) of RNA polymerase I complex","protein_coding" "Seita.3G357800.1","No alias","Setaria italica ","RNA editing factor *(ORRM3)","protein_coding" "Seita.3G384700.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.3G392200.1","No alias","Setaria italica ","substrate adaptor of CUL4-based E3 ubiquitin ligase complex","protein_coding" "Seita.4G003400.1","No alias","Setaria italica ","RNA helicase component *(MTR4) of TRAMP nucleolar regulation complex","protein_coding" "Seita.4G012800.1","No alias","Setaria italica ","RNA editing factor *(MORF)","protein_coding" "Seita.4G017900.1","No alias","Setaria italica ","component *(uL29m) of large mitoribosomal-subunit proteome","protein_coding" "Seita.4G018800.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.4G107400.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.4G167800.1","No alias","Setaria italica ","mRNA helicase *(RH31)","protein_coding" "Seita.4G176500.1","No alias","Setaria italica ","component *(uL1m) of large mitoribosomal-subunit proteome","protein_coding" "Seita.4G201000.1","No alias","Setaria italica ","SSU processome assembly factor *(UTP21)","protein_coding" "Seita.4G217700.1","No alias","Setaria italica ","component *(NRPA1) of RNA polymerase I complex","protein_coding" "Seita.4G220400.1","No alias","Setaria italica ","component *(CLO/SNU114/MAC11) of MAC spliceosome-associated complex","protein_coding" "Seita.4G239100.1","No alias","Setaria italica ","subunit epsilon *(CCT5) of CCT chaperonin folding complex","protein_coding" "Seita.5G025500.1","No alias","Setaria italica ","component *(NDC80) of NDC80 outer kinetochore complex","protein_coding" "Seita.5G028100.1","No alias","Setaria italica ","component *(NDC80) of NDC80 outer kinetochore complex","protein_coding" "Seita.5G049800.1","No alias","Setaria italica ","SSU processome assembly factor *(UTP7)","protein_coding" "Seita.5G051400.1","No alias","Setaria italica ","XRN4-exoribonuclease cofactor *(LARP1)","protein_coding" "Seita.5G061400.1","No alias","Setaria italica ","component *(uL3m) of large mitoribosomal-subunit proteome","protein_coding" "Seita.5G192100.1","No alias","Setaria italica ","component *(MCM4) of MCM replicative DNA helicase complex","protein_coding" "Seita.5G216700.1","No alias","Setaria italica ","regulatory protein *(RGG) of mRNA quality control","protein_coding" "Seita.5G261100.1","No alias","Setaria italica ","component *(eIF3d) of eIF3 mRNA-to-PIC binding complex","protein_coding" "Seita.5G286100.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.5G320600.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.5G374000.1","No alias","Setaria italica ","helicase component *(RVB) & helicase component *(RVB) of chromatin remodeling complex","protein_coding" "Seita.5G375300.1","No alias","Setaria italica ","component *(uL17m) of large mitoribosomal-subunit proteome","protein_coding" "Seita.5G433800.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.5G459200.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.6G017200.1","No alias","Setaria italica ","component *(uL30) of large ribosomal-subunit (LSU) proteome","protein_coding" "Seita.6G048000.1","No alias","Setaria italica ","component *(TRM732) of TRM7-TRM732/TRM734 tRNA cytidine/guanosine-methyltransferase complex","protein_coding" "Seita.6G140100.1","No alias","Setaria italica ","component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex","protein_coding" "Seita.6G214500.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.6G228300.1","No alias","Setaria italica ","regulatory protein (RBR) of cell cycle interphase","protein_coding" "Seita.7G013900.1","No alias","Setaria italica ","tRNA dihydrouridine synthase","protein_coding" "Seita.7G035100.1","No alias","Setaria italica ","primase component *(POLA4) of DNA polymerase alpha complex","protein_coding" "Seita.7G067000.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.7G073600.1","No alias","Setaria italica ","primase component *(POLA3) of DNA polymerase alpha complex","protein_coding" "Seita.7G126300.1","No alias","Setaria italica ","component of FtsH3/10 matrix-AAA protease heterodimer","protein_coding" "Seita.7G134600.1","No alias","Setaria italica ","component *(eL6) of large ribosomal-subunit (LSU) proteome","protein_coding" "Seita.7G146100.1","No alias","Setaria italica ","mitochondrial transcript stability factor *(MTSF1)","protein_coding" "Seita.7G147700.1","No alias","Setaria italica ","translation ribosome recycling factor *(RRF)","protein_coding" "Seita.7G153300.1","No alias","Setaria italica ","nascent RNA chaperone *(LA)","protein_coding" "Seita.7G158500.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.7G200100.1","No alias","Setaria italica ","component *(TRM6) of TRM61-TRM6 tRNA adenosine-methyltransferase complex","protein_coding" "Seita.7G214100.1","No alias","Setaria italica ","SSU processome assembly factor *(NOC4)","protein_coding" "Seita.7G222200.1","No alias","Setaria italica ","component *(uL11) of large ribosomal-subunit (LSU) proteome","protein_coding" "Seita.7G291600.1","No alias","Setaria italica ","pre-40S ribosomal subunit assembly factor *(UTP22)","protein_coding" "Seita.8G022100.1","No alias","Setaria italica ","SSU processome assembly factor *(MPP10)","protein_coding" "Seita.8G046000.1","No alias","Setaria italica ","component *(uL3) of large ribosomal-subunit (LSU) proteome","protein_coding" "Seita.8G071500.1","No alias","Setaria italica ","LRR-XI protein kinase & IDA/IDL-peptide receptor kinase *(HAESA) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Seita.8G095000.1","No alias","Setaria italica ","RNA editing factor *(MORF)","protein_coding" "Seita.8G104600.1","No alias","Setaria italica ","component *(SEC3) of Exocyst complex","protein_coding" "Seita.8G114300.1","No alias","Setaria italica ","component *(uS7) of small ribosomal-subunit (SSU) proteome","protein_coding" "Seita.8G121500.1","No alias","Setaria italica ","component *(MCM2) of MCM replicative DNA helicase complex","protein_coding" "Seita.9G025100.1","No alias","Setaria italica ","rRNA processing factor involved in ITS2 rRNA removal *(APUM24)","protein_coding" "Seita.9G100700.1","No alias","Setaria italica ","scaffold nucleoporin of nuclear pore complex *(ELYS)","protein_coding" "Seita.9G104200.1","No alias","Setaria italica ","primase component *(POLA4) of DNA polymerase alpha complex","protein_coding" "Seita.9G108300.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G144600.1","No alias","Setaria italica ","histone chaperone *(ANP32)","protein_coding" "Seita.9G152100.1","No alias","Setaria italica ","cysteine oxidase *(PCO)","protein_coding" "Seita.9G171700.1","No alias","Setaria italica ","component *(ELP1) of ELONGATOR transcription elongation complex","protein_coding" "Seita.9G174300.1","No alias","Setaria italica ","SSU processome assembly factor *(UTP2/NOP14)","protein_coding" "Seita.9G178100.1","No alias","Setaria italica ","EC_6.1 ligase forming carbon-oxygen bond & lysine-tRNA ligase","protein_coding" "Seita.9G203600.1","No alias","Setaria italica ","component *(bL22m) of large mitoribosomal-subunit proteome","protein_coding" "Seita.9G216000.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G227300.1","No alias","Setaria italica ","regulatory protein *(NCL) of rRNA transcription","protein_coding" "Seita.9G227700.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G229600.1","No alias","Setaria italica ","component *(eL21) of large ribosomal-subunit (LSU) proteome","protein_coding" "Seita.9G243800.1","No alias","Setaria italica ","exoribonuclease *(RRP6L)","protein_coding" "Seita.9G319400.1","No alias","Setaria italica ","CDC7 protein kinase & adherin-recruiting kinase *(CDC7) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Seita.9G362600.1","No alias","Setaria italica ","mRNA endoribonuclease *(G3BP)","protein_coding" "Seita.9G371600.1","No alias","Setaria italica ","component *(uS2) of small ribosomal-subunit (SSU) proteome","protein_coding" "Seita.9G380300.1","No alias","Setaria italica ","component *(uL23m) of large mitoribosomal-subunit proteome","protein_coding" "Seita.9G404600.1","No alias","Setaria italica ","scaffold component *(Nop58) of snoRNP rRNA methylation complex","protein_coding" "Seita.9G414500.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G451100.1","No alias","Setaria italica ","UDP-L-rhamnose synthase *(RHM)","protein_coding" "Seita.9G473200.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G537800.1","No alias","Setaria italica ","SSU processome assembly factor *(UTP12)","protein_coding" "Seita.9G576600.1","No alias","Setaria italica ","beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer","protein_coding" "Sobic.001G016800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G238900.1","No alias","Sorghum bicolor ","substrate adaptor *(FBS) of SCF E3 ubiquitin ligase complex","protein_coding" "Sobic.001G291500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G295400.1","No alias","Sorghum bicolor ","CDC7 protein kinase & adherin-recruiting kinase *(CDC7) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.001G456500.1","No alias","Sorghum bicolor ","component *(RPA1) of single-stranded-DNA binding RPA complex & component *(RPA1) of RPA presynaptic filament assembly factor complex","protein_coding" "Sobic.001G471100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G007800.1","No alias","Sorghum bicolor ","histone demethylase *(PKDM7)","protein_coding" "Sobic.002G021200.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(DDM1)","protein_coding" "Sobic.002G113400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G190000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G223200.1","No alias","Sorghum bicolor ","plastidic signal peptidase *(PLSP/TPP)","protein_coding" "Sobic.002G254600.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G290000.2","No alias","Sorghum bicolor ","dsDNA helicase *(FANCJ)","protein_coding" "Sobic.002G326400.1","No alias","Sorghum bicolor ","DUF26 protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.002G327900.1","No alias","Sorghum bicolor ","EC_3.2 glycosylase","protein_coding" "Sobic.002G362900.1","No alias","Sorghum bicolor ","CDK9 protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.002G394300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.003G038400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.003G041700.1","No alias","Sorghum bicolor ","component *(MSH7) of MSH2-x mismatch repair heterodimers","protein_coding" "Sobic.003G055600.1","No alias","Sorghum bicolor ","associated component *(ETG1) of MCM replicative DNA helicase complex","protein_coding" "Sobic.003G067600.1","No alias","Sorghum bicolor ","EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.003G137300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.003G183700.1","No alias","Sorghum bicolor ","component *(MCM4) of MCM replicative DNA helicase complex","protein_coding" "Sobic.003G224200.1","No alias","Sorghum bicolor ","MLK-I protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.003G251600.1","No alias","Sorghum bicolor ","SD-2 protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.003G339800.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.003G369200.2","No alias","Sorghum bicolor ","catalytic component *(POLA1) of DNA polymerase alpha complex","protein_coding" "Sobic.003G387600.1","No alias","Sorghum bicolor ","component *(CAF1a/FAS1) of CAF1 histone chaperone complex","protein_coding" "Sobic.004G098100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.004G170500.2","No alias","Sorghum bicolor ","histone *(H3)","protein_coding" "Sobic.004G205300.1","No alias","Sorghum bicolor ","histone *(H2A)","protein_coding" "Sobic.004G207800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.004G321400.1","No alias","Sorghum bicolor ","chromatin stabilizing factor *(TSK)","protein_coding" "Sobic.004G331600.1","No alias","Sorghum bicolor ","component *(MCM5) of MCM replicative DNA helicase complex","protein_coding" "Sobic.004G355500.1","No alias","Sorghum bicolor ","component *(RPA2) of RPA presynaptic filament assembly factor complex & component *(RPA2) of single-stranded-DNA binding RPA complex","protein_coding" "Sobic.005G110535.1","No alias","Sorghum bicolor ","component *(MCM2) of MCM replicative DNA helicase complex","protein_coding" "Sobic.005G131600.2","No alias","Sorghum bicolor ","EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.006G029300.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(Rad5)","protein_coding" "Sobic.006G051000.3","No alias","Sorghum bicolor ","primase component *(POLA3) of DNA polymerase alpha complex","protein_coding" "Sobic.006G081800.1","No alias","Sorghum bicolor ","histone *(H3)","protein_coding" "Sobic.006G084600.1","No alias","Sorghum bicolor ","gamma-aminobutyric acid transporter *(GABP)","protein_coding" "Sobic.006G195500.1","No alias","Sorghum bicolor ","DNA replication auxiliary factor *(JHS1/DNA2)","protein_coding" "Sobic.006G200000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.006G214000.1","No alias","Sorghum bicolor ","DNA chromomethylase *(CMT)","protein_coding" "Sobic.006G237300.1","No alias","Sorghum bicolor ","EC_1.14 oxidoreductase acting on paired donor with incorporation or reduction of molecular oxygen","protein_coding" "Sobic.007G000500.1","No alias","Sorghum bicolor ","DNA bending architectural protein *(HMG-B)","protein_coding" "Sobic.007G008300.1","No alias","Sorghum bicolor ","component *(CAF1b/FAS2) of CAF1 histone chaperone complex","protein_coding" "Sobic.007G028900.4","No alias","Sorghum bicolor ","regulatory protein *(TDM1) of meiosis-I to meiosis-II transition","protein_coding" "Sobic.007G089300.1","No alias","Sorghum bicolor ","DUF26 protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.007G128400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.007G150700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.007G152900.1","No alias","Sorghum bicolor ","non-catalytic component *(Dpb2) of DNA polymerase epsilon complex","protein_coding" "Sobic.007G187700.1","No alias","Sorghum bicolor ","regulatory protein (RBR) of cell cycle interphase","protein_coding" "Sobic.008G020500.1","No alias","Sorghum bicolor ","cell cycle auxiliary factor *(CDC45)","protein_coding" "Sobic.008G129200.1","No alias","Sorghum bicolor ","component *(MCM7) of MCM replicative DNA helicase complex","protein_coding" "Sobic.008G156600.1","No alias","Sorghum bicolor ","substrate adaptor *(FBL17) of SCF E3 ubiquitin ligase complex & regulatory protein *(FBL17) of cell cycle","protein_coding" "Sobic.009G008100.3","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.009G051900.3","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.009G087000.1","No alias","Sorghum bicolor ","component *(MCM6) of MCM replicative DNA helicase complex","protein_coding" "Sobic.009G109300.1","No alias","Sorghum bicolor ","primase component *(POLA4) of DNA polymerase alpha complex","protein_coding" "Sobic.009G172950.1","No alias","Sorghum bicolor ","component *(MCM3) of MCM replicative DNA helicase complex","protein_coding" "Sobic.010G013100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.010G028700.2","No alias","Sorghum bicolor ","RNA editing factor *(COD1)","protein_coding" "Sobic.010G047200.1","No alias","Sorghum bicolor ","histone *(H3)","protein_coding" "Sobic.010G062900.1","No alias","Sorghum bicolor ","hydroxyproline-O-arabinosyltransferase *(HPAT) & hydroxyproline beta-1,4-arabinosyltransferase *(HPAT)","protein_coding" "Sobic.010G103700.2","No alias","Sorghum bicolor ","replication fork tethering component *(POLA2) of DNA polymerase alpha complex","protein_coding" "Sobic.010G147700.1","No alias","Sorghum bicolor ","regulatory protein ELP1 of PRC1 histone mono-ubiquitination complex","protein_coding" "Sobic.010G174900.1","No alias","Sorghum bicolor ","SD-2 protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.010G191750.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.010G219800.1","No alias","Sorghum bicolor ","lytic vacuole protein sorting receptor *(VSR)","protein_coding" "Solyc01g006140","No alias","Solanum lycopersicum","CDT1-like protein a, chloroplastic (AHRD V3.3 *** A0A0B0P9Z8_GOSAR)","protein_coding" "Solyc01g006820","No alias","Solanum lycopersicum","LOW QUALITY:basic helix-loop-helix (bHLH) DNA-binding superfamily protein (AHRD V3.3 --* AT5G57150.5)","protein_coding" "Solyc01g010150","No alias","Solanum lycopersicum","ACT domain-containing protein (AHRD V3.3 *** A0A118JXJ7_CYNCS)","protein_coding" "Solyc01g057520","No alias","Solanum lycopersicum","ARM repeat superfamily protein (AHRD V3.3 *** A0A061EX70_THECC)","protein_coding" "Solyc01g058270","No alias","Solanum lycopersicum","O-acetyltransferase family protein (AHRD V3.3 *** AT3G06550.1)","protein_coding" "Solyc01g079500","No alias","Solanum lycopersicum","Vps51/Vps67 family (components of vesicular transport) protein (AHRD V3.3 *** AT4G02030.1)","protein_coding" "Solyc01g079520","No alias","Solanum lycopersicum","DNA mismatch repair protein (AHRD V3.3 *** Q6DQL6_PETHY)","protein_coding" "Solyc01g086690","No alias","Solanum lycopersicum","LOW QUALITY:Sister chromatid cohesion 1 protein 3 (AHRD V3.3 *** W9R9I5_9ROSA)","protein_coding" "Solyc01g088380","No alias","Solanum lycopersicum","DNA replication helicase (AHRD V3.3 *** AT1G08840.4)","protein_coding" "Solyc01g091340","No alias","Solanum lycopersicum","Peptidyl-prolyl cis-trans isomerase (AHRD V3.3 *-* A0A0K9P1Y7_ZOSMR)","protein_coding" "Solyc01g096220","No alias","Solanum lycopersicum","Ras-related protein RABA3 (AHRD V3.3 *** A0A0B2Q7Y9_GLYSO)","protein_coding" "Solyc01g097970","No alias","Solanum lycopersicum","Deoxyuridine 5'-triphosphate nucleotidohydrolase (AHRD V3.3 *** DUT_SOLLC)","protein_coding" "Solyc01g100030","No alias","Solanum lycopersicum","deoxyuridine triphosphatase","protein_coding" "Solyc01g100280","No alias","Solanum lycopersicum","RNA helicase DEAH-box4","protein_coding" "Solyc01g101030","No alias","Solanum lycopersicum","FACT complex subunit SPT16 (AHRD V3.3 *** W9RSN6_9ROSA)","protein_coding" "Solyc01g104400","No alias","Solanum lycopersicum","Basic blue protein (AHRD V3.3 *** A0A151R520_CAJCA)","protein_coding" "Solyc01g105520","No alias","Solanum lycopersicum","DNA helicase (AHRD V3.3 *** I1Q0P7_ORYGL)","protein_coding" "Solyc01g110130","No alias","Solanum lycopersicum","DNA helicase (AHRD V3.3 *** K4B3M6_SOLLC)","protein_coding" "Solyc02g055460","No alias","Solanum lycopersicum","Protein disulfide-isomerase (AHRD V3.3 *** A0A0B2RKB0_GLYSO)","protein_coding" "Solyc02g070500","No alias","Solanum lycopersicum","LOW QUALITY:DUF538 family protein (Protein of unknown function, DUF538) (AHRD V3.3 *** AT4G24130.1)","protein_coding" "Solyc02g070780","No alias","Solanum lycopersicum","DNA helicase (AHRD V3.3 *** K4B859_SOLLC)","protein_coding" "Solyc02g071830","No alias","Solanum lycopersicum","Mammalian uncoordinated homology 13, domain 2 (AHRD V3.3 *-* A0A118JRY8_CYNCS)","protein_coding" "Solyc02g077630","No alias","Solanum lycopersicum","Receptor-like protein kinase HSL1 (AHRD V3.3 *** HSL1_ARATH)","protein_coding" "Solyc02g078580","No alias","Solanum lycopersicum","RNA polymerase-associated protein RTF1 like (AHRD V3.3 *** A0A0B2PDF2_GLYSO)","protein_coding" "Solyc02g079750","No alias","Solanum lycopersicum","Quinone reductase family protein (AHRD V3.3 *** AT4G27270.1)","protein_coding" "Solyc02g080480","No alias","Solanum lycopersicum","Protein DETOXIFICATION (AHRD V3.3 *** K4B9R9_SOLLC)","protein_coding" "Solyc02g080550","No alias","Solanum lycopersicum","SH3 domain-binding protein 1, putative (AHRD V3.3 *** A0A061F5K7_THECC)","protein_coding" "Solyc02g082180","No alias","Solanum lycopersicum","DNA helicase (AHRD V3.3 *** K4BA88_SOLLC)","protein_coding" "Solyc02g083600","No alias","Solanum lycopersicum","Cell cycle checkpoint protein RAD17 (AHRD V3.3 *** W9SMX8_9ROSA)","protein_coding" "Solyc02g084720","No alias","Solanum lycopersicum","beta-galactosidase 6","protein_coding" "Solyc02g085390","No alias","Solanum lycopersicum","chromatin remodeling 1 (AHRD V3.3 *** AT5G66750.1)","protein_coding" "Solyc02g086470","No alias","Solanum lycopersicum","Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** A0A061EDJ2_THECC)","protein_coding" "Solyc02g088510","No alias","Solanum lycopersicum","Saccharopine dehydrogenase (AHRD V3.3 *** AT5G39410.1)","protein_coding" "Solyc02g092930","No alias","Solanum lycopersicum","R2R3MYB transcription factor 44","protein_coding" "Solyc02g093300","No alias","Solanum lycopersicum","DNA polymerase (AHRD V3.3 *** H9E8V2_SOLLC)","protein_coding" "Solyc02g093400","No alias","Solanum lycopersicum","Protein MurJ (AHRD V3.3 *-* A0A1D1XN27_9ARAE)","protein_coding" "Solyc02g094100","No alias","Solanum lycopersicum","Katanin p60 ATPase-containing subunit A1 (AHRD V3.3 *-* KTNA1_ARATH)","protein_coding" "Solyc03g005220","No alias","Solanum lycopersicum","calcium-dependent protein kinase 21 (AHRD V3.3 --* AT4G04720.2)","protein_coding" "Solyc03g005460","No alias","Solanum lycopersicum","Helicase protein with RING/U-box domain-containing protein (AHRD V3.3 *** AT5G43530.1)","protein_coding" "Solyc03g007800","No alias","Solanum lycopersicum","Protein timeless like (AHRD V3.3 *** A0A0B2QAC2_GLYSO)","protein_coding" "Solyc03g026300","No alias","Solanum lycopersicum","Post-GPI attachment-like factor-protein (AHRD V3.3 *** A0A072UAB4_MEDTR)","protein_coding" "Solyc03g033390","No alias","Solanum lycopersicum","F-box family protein (AHRD V3.3 *** A0A061DGH5_THECC)","protein_coding" "Solyc03g082860","No alias","Solanum lycopersicum","Histone-lysine N-methyltransferase (AHRD V3.3 *** W9S1W1_9ROSA)","protein_coding" "Solyc03g083620","No alias","Solanum lycopersicum","LOW QUALITY:receptor like protein 56 (AHRD V3.3 --* AT5G49290.9)","protein_coding" "Solyc03g097690","No alias","Solanum lycopersicum","Kinase family protein (AHRD V3.3 *** D7MQB8_ARALL)","protein_coding" "Solyc03g114690","No alias","Solanum lycopersicum","WD-repeat protein, putative (AHRD V3.3 *** B9RVD7_RICCO)","protein_coding" "Solyc03g115200","No alias","Solanum lycopersicum","Glucan endo-1,3-beta-glucosidase-like protein (AHRD V3.3 *** K8DWB8_CUCSA)","protein_coding" "Solyc04g008600","No alias","Solanum lycopersicum","Zinc knuckle family protein (AHRD V3.3 *** B9HVL9_POPTR)","protein_coding" "Solyc04g008830","No alias","Solanum lycopersicum","LOW QUALITY:Leucine-rich repeat receptor-like protein kinase family protein (AHRD V3.3 *** A0A061DFG6_THECC)","protein_coding" "Solyc04g017650","No alias","Solanum lycopersicum","PAX-interacting protein 1 (AHRD V3.3 *** W9RS25_9ROSA)","protein_coding" "Solyc04g045530","No alias","Solanum lycopersicum","DNA primase large subunit (AHRD V3.3 *** K4BRI2_SOLLC)","protein_coding" "Solyc04g074340","No alias","Solanum lycopersicum","Glycosyltransferase (AHRD V3.3 *** K4BTX2_SOLLC)","protein_coding" "Solyc04g077160","No alias","Solanum lycopersicum","myb-like protein X (AHRD V3.3 *-* AT4G33740.5)","protein_coding" "Solyc04g080200","No alias","Solanum lycopersicum","Endoribonuclease Dicer-like protein (AHRD V3.3 *-* A0A0B0MLI3_GOSAR)","protein_coding" "Solyc05g007150","No alias","Solanum lycopersicum","UDP-galactose transporter, putative (AHRD V3.3 *** B9S297_RICCO)","protein_coding" "Solyc05g007450","No alias","Solanum lycopersicum","Origin recognition complex, subunit 6 (AHRD V3.3 *** A0A118K386_CYNCS)","protein_coding" "Solyc05g007490","No alias","Solanum lycopersicum","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (AHRD V3.3 *** AT1G26850.2)","protein_coding" "Solyc05g007900","No alias","Solanum lycopersicum","LOW QUALITY:RING/U-box superfamily protein, putative (AHRD V3.3 *** A0A061EHX5_THECC)","protein_coding" "Solyc05g008540","No alias","Solanum lycopersicum","Origin recognition complex subunit 4 (AHRD V3.3 *** K4BX28_SOLLC)","protein_coding" "Solyc05g008780","No alias","Solanum lycopersicum","PROTON PUMP INTERACTOR 1 family protein (AHRD V3.3 *-* U5GXF2_POPTR)","protein_coding" "Solyc05g012060","No alias","Solanum lycopersicum","Histone-lysine N-methyltransferase ATX1, putative isoform 2 (AHRD V3.3 *-* A0A061E9H7_THECC)","protein_coding" "Solyc05g014540","No alias","Solanum lycopersicum","DNA polymerase alpha subunit B (AHRD V3.3 *** K4BYH3_SOLLC)","protein_coding" "Solyc05g014690","No alias","Solanum lycopersicum","RNA helicase DEAH-box14","protein_coding" "Solyc05g052990","No alias","Solanum lycopersicum","maternal effect embryo arrest 60 (AHRD V3.3 *** AT5G05950.1)","protein_coding" "Solyc05g056560","No alias","Solanum lycopersicum","hikeshi-like protein (AHRD V3.3 *** AT1G66080.1)","protein_coding" "Solyc06g007140","No alias","Solanum lycopersicum","Omega-3 fatty acid desaturase","protein_coding" "Solyc06g008210","No alias","Solanum lycopersicum","breast cancer associated RING 1 (AHRD V3.3 *** AT1G04020.1)","protein_coding" "Solyc06g008510","No alias","Solanum lycopersicum","CDT1-like protein a, chloroplastic (AHRD V3.3 *** A0A0B0P9Z8_GOSAR)","protein_coding" "Solyc06g008840","No alias","Solanum lycopersicum","BRCT domain-containing DNA repair protein, putative isoform 1 (AHRD V3.3 *-* A0A061ENE5_THECC)","protein_coding" "Solyc06g009710","No alias","Solanum lycopersicum","R2R3MYB transcription factor 111","protein_coding" "Solyc06g054560","No alias","Solanum lycopersicum","RNA helicase DEAH-box19","protein_coding" "Solyc06g069230","No alias","Solanum lycopersicum","DNA mismatch repair protein (AHRD V3.3 *** Q6DQL7_PETHY)","protein_coding" "Solyc06g069820","No alias","Solanum lycopersicum","DUF674 family protein (AHRD V3.3 *** A0A072TP22_MEDTR)","protein_coding" "Solyc06g072660","No alias","Solanum lycopersicum","Protein DEK (AHRD V3.3 *** A0A0B2QBX5_GLYSO)","protein_coding" "Solyc06g073550","No alias","Solanum lycopersicum","La-related protein (AHRD V3.3 *** A0A0B2S1Z3_GLYSO)","protein_coding" "Solyc06g076660","No alias","Solanum lycopersicum","proliferating cell nuclear antigen","protein_coding" "Solyc07g005020","No alias","Solanum lycopersicum","DNA helicase (AHRD V3.3 *** K4CAX4_SOLLC)","protein_coding" "Solyc07g007920","No alias","Solanum lycopersicum","Telomere-associated protein RIF1, putative (AHRD V3.3 *** A0A061GVQ3_THECC)","protein_coding" "Solyc07g018300","No alias","Solanum lycopersicum","Replication protein A subunit (AHRD V3.3 *** A0A1D1Z493_9ARAE)","protein_coding" "Solyc07g042590","No alias","Solanum lycopersicum","Kinase family protein (AHRD V3.3 *-* D7M6D0_ARALL)","protein_coding" "Solyc07g048070","No alias","Solanum lycopersicum","Auxin induced-like protein (AHRD V3.3 *** A0A0K9NX81_ZOSMR)","protein_coding" "Solyc07g052980","No alias","Solanum lycopersicum","xyloglucan endotransglycosylase/hydrolase 16","protein_coding" "Solyc07g053190","No alias","Solanum lycopersicum","Enhancer of polycomb-like protein (AHRD V3.3 *** K4CFL7_SOLLC)","protein_coding" "Solyc07g055750","No alias","Solanum lycopersicum","Strictosidine synthase-like protein (AHRD V3.3 *** A7WPL3_TOBAC)","protein_coding" "Solyc07g056390","No alias","Solanum lycopersicum","Endoplasmic oxidoreductin-1, putative (AHRD V3.3 *** B9T812_RICCO)","protein_coding" "Solyc07g062050","No alias","Solanum lycopersicum","SH2 domain protein A (AHRD V3.3 *** AT1G17040.1)","protein_coding" "Solyc07g065920","No alias","Solanum lycopersicum","DUF2431 domain protein (AHRD V3.3 *-* G7IY67_MEDTR)","protein_coding" "Solyc08g007170","No alias","Solanum lycopersicum","LOW QUALITY:Transcription factor, putative (AHRD V3.3 *-* A0A061DWU0_THECC)","protein_coding" "Solyc08g068420","No alias","Solanum lycopersicum","L-gulonolactone oxidase (AHRD V3.3 *** A0A151T9K5_CAJCA)","protein_coding" "Solyc08g076610","No alias","Solanum lycopersicum","Cell cycle checkpoint protein RAD1 (AHRD V3.3 *-* W9RDU4_9ROSA)","protein_coding" "Solyc08g079150","No alias","Solanum lycopersicum","SAUR-like auxin-responsive protein family (AHRD V3.3 *** AT4G22620.1)","protein_coding" "Solyc08g080280","No alias","Solanum lycopersicum","FAM91 carboxy-terminus protein (AHRD V3.3 --* AT1G35220.6)","protein_coding" "Solyc08g080720","No alias","Solanum lycopersicum","Selenoprotein H (AHRD V3.3 *-* A0A0B0P3H0_GOSAR)","protein_coding" "Solyc08g082200","No alias","Solanum lycopersicum","DNA primase (AHRD V3.3 *** K4CPL6_SOLLC)","protein_coding" "Solyc09g007330","No alias","Solanum lycopersicum","minichromosome maintenance 8 (AHRD V3.3 *** AT3G09660.3)","protein_coding" "Solyc09g009260","No alias","Solanum lycopersicum","fructose-1,6-bisphosphate aldolase","protein_coding" "Solyc09g009380","No alias","Solanum lycopersicum","Protein kinase (AHRD V3.3 *-* A0A0K9NMI8_ZOSMR)","protein_coding" "Solyc09g009900","No alias","Solanum lycopersicum","Nucleic acid-binding, OB-fold (AHRD V3.3 *** A0A103YMS1_CYNCS)","protein_coding" "Solyc09g011820","No alias","Solanum lycopersicum","DNA double-strand break repair rad50 ATPase, putative isoform 1 (AHRD V3.3 *** A0A061EYI5_THECC)","protein_coding" "Solyc09g075350","No alias","Solanum lycopersicum","Pectinesterase (AHRD V3.3 *** K4CVB2_SOLLC)","protein_coding" "Solyc09g090670","No alias","Solanum lycopersicum","Oxidation resistance 1 (AHRD V3.3 *** A0A0B0PUF7_GOSAR)","protein_coding" "Solyc09g091280","No alias","Solanum lycopersicum","Retinoblastoma-related protein 1 (AHRD V3.3 *** H9E8V1_SOLLC)","protein_coding" "Solyc09g091370","No alias","Solanum lycopersicum","holliday junction resolvase (AHRD V3.3 *** AT1G04650.1)","protein_coding" "Solyc09g091650","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT1G04730.1)","protein_coding" "Solyc09g092510","No alias","Solanum lycopersicum","Pyrroline-5-carboxylate reductase (AHRD V3.3 *-* A0A1D1ZGA1_9ARAE)","protein_coding" "Solyc10g005970","No alias","Solanum lycopersicum","phospholipase-like protein (PEARLI 4) family protein (AHRD V3.3 --* AT2G20960.2)","protein_coding" "Solyc10g007400","No alias","Solanum lycopersicum","DNA polymerase delta subunit 3 (AHRD V3.3 *** A0A0B0NMF9_GOSAR)","protein_coding" "Solyc10g008320","No alias","Solanum lycopersicum","LOW QUALITY:phosphatidic acid phosphatase 1 (AHRD V3.3 --* AT2G01180.6)","protein_coding" "Solyc10g054910","No alias","Solanum lycopersicum","Peptidyl-prolyl cis-trans isomerase (AHRD V3.3 *** K4D184_SOLLC)","protein_coding" "Solyc10g078470","No alias","Solanum lycopersicum","Tryptophan/tyrosine permease (AHRD V3.3 *** AT2G33260.2)","protein_coding" "Solyc10g079090","No alias","Solanum lycopersicum","Chaperone protein dnaJ, putative (AHRD V3.3 *** B9SL79_RICCO)","protein_coding" "Solyc10g079510","No alias","Solanum lycopersicum","RAD3-like DNA-binding helicase protein (AHRD V3.3 *** AT1G20720.2)","protein_coding" "Solyc10g083500","No alias","Solanum lycopersicum","Protein kinase family protein (AHRD V3.3 *-* Q9LZS4_ARATH)","protein_coding" "Solyc11g005690","No alias","Solanum lycopersicum","TONSOKU protein (AHRD V3.3 *** Q4W7J1_TOBAC)","protein_coding" "Solyc11g005800","No alias","Solanum lycopersicum","Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** AT5G64630.2)","protein_coding" "Solyc11g008670","No alias","Solanum lycopersicum","Chromatin assembly factor 1, subunit A, putative (AHRD V3.3 *** B9RM13_RICCO)","protein_coding" "Solyc11g030600","No alias","Solanum lycopersicum","cytosine-5 DNA methyltransferase","protein_coding" "Solyc11g040120","No alias","Solanum lycopersicum","DNA helicase (AHRD V3.3 *** M0ZQ54_SOLTU)","protein_coding" "Solyc11g066830","No alias","Solanum lycopersicum","Zinc finger transcription factor 68","protein_coding" "Solyc12g011050","No alias","Solanum lycopersicum","RNA binding protein, putative (AHRD V3.3 *** B9SEZ1_RICCO)","protein_coding" "Solyc12g089330","No alias","Solanum lycopersicum","Calcium-dependent lipid-binding (CaLB domain) family protein (AHRD V3.3 *** AT1G20080.5)","protein_coding" "Solyc12g098490","No alias","Solanum lycopersicum","Serine hydroxymethyltransferase (AHRD V3.3 *** M1A0B7_SOLTU)","protein_coding" "Sopen04g017360","No alias","Solanum pennellii","Eukaryotic and archaeal DNA primase, large subunit","protein_coding" "Sopen08g030490","No alias","Solanum pennellii","Eukaryotic and archaeal DNA primase small subunit","protein_coding"