"sequence_id","alias","species","description","type" "107633","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "107776","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "109459","No alias","Selaginella moellendorffii ","RING/U-box superfamily protein","protein_coding" "110368","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "114043","No alias","Selaginella moellendorffii ","Cation efflux family protein","protein_coding" "126689","No alias","Selaginella moellendorffii ","O-fucosyltransferase family protein","protein_coding" "135536","No alias","Selaginella moellendorffii ","peptide transporter 2","protein_coding" "145414","No alias","Selaginella moellendorffii ","hydrolases, acting on ester bonds","protein_coding" "165509","No alias","Selaginella moellendorffii ","KU70 homolog","protein_coding" "171078","No alias","Selaginella moellendorffii ","Zn-dependent exopeptidases superfamily protein","protein_coding" "228256","No alias","Selaginella moellendorffii ","Molybdenum cofactor sulfurase family protein","protein_coding" "231467","No alias","Selaginella moellendorffii ","O-fucosyltransferase family protein","protein_coding" "231846","No alias","Selaginella moellendorffii ","Chalcone and stilbene synthase family protein","protein_coding" "233460","No alias","Selaginella moellendorffii ","high affinity K+ transporter 5","protein_coding" "267388","No alias","Selaginella moellendorffii ","clathrin adaptor complexes medium subunit family protein","protein_coding" "270208","No alias","Selaginella moellendorffii ","Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein","protein_coding" "270428","No alias","Selaginella moellendorffii ","phosphate starvation response 1","protein_coding" "33314","No alias","Selaginella moellendorffii ","Transmembrane amino acid transporter family protein","protein_coding" "36370","No alias","Selaginella moellendorffii ","Nodulin MtN3 family protein","protein_coding" "402429","No alias","Selaginella moellendorffii ","Root hair defective 3 GTP-binding protein (RHD3)","protein_coding" "403140","No alias","Selaginella moellendorffii ","C2 calcium/lipid-binding plant phosphoribosyltransferase family protein","protein_coding" "405724","No alias","Selaginella moellendorffii ","golgin candidate 1","protein_coding" "407218","No alias","Selaginella moellendorffii ","CYCLIN D3;3","protein_coding" "407903","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "408998","No alias","Selaginella moellendorffii ","hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase","protein_coding" "410242","No alias","Selaginella moellendorffii ","RING/FYVE/PHD zinc finger superfamily protein","protein_coding" "411108","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "412527","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "412756","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "413446","No alias","Selaginella moellendorffii ","Acyl-CoA thioesterase family protein","protein_coding" "413568","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "415610","No alias","Selaginella moellendorffii ","Galactose oxidase/kelch repeat superfamily protein","protein_coding" "416365","No alias","Selaginella moellendorffii ","DHHC-type zinc finger family protein","protein_coding" "421607","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "423134","No alias","Selaginella moellendorffii ","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding" "424032","No alias","Selaginella moellendorffii ","ZIP metal ion transporter family","protein_coding" "427502","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "427571","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "437478","No alias","Selaginella moellendorffii ","Myotubularin-like phosphatases II superfamily","protein_coding" "440877","No alias","Selaginella moellendorffii ","wound-responsive family protein","protein_coding" "444321","No alias","Selaginella moellendorffii ","G2484-1 protein","protein_coding" "448393","No alias","Selaginella moellendorffii ","DNA/RNA helicase protein","protein_coding" "54873","No alias","Selaginella moellendorffii ","Ca2+ activated outward rectifying K+ channel 6","protein_coding" "65341","No alias","Selaginella moellendorffii ","Presenilin-2","protein_coding" "67834","No alias","Selaginella moellendorffii ","AGAMOUS-like 26","protein_coding" "68172","No alias","Selaginella moellendorffii ","Protein of unknown function (DUF1637)","protein_coding" "73567","No alias","Selaginella moellendorffii ","Nucleotide-diphospho-sugar transferases superfamily protein","protein_coding" "74928","No alias","Selaginella moellendorffii ","Ku80 family protein","protein_coding" "78255","No alias","Selaginella moellendorffii ","KU70 homolog","protein_coding" "79072","No alias","Selaginella moellendorffii ","alpha-amylase-like","protein_coding" "79631","No alias","Selaginella moellendorffii ","Transducin/WD40 repeat-like superfamily protein","protein_coding" "79963","No alias","Selaginella moellendorffii ","Protein kinase superfamily protein","protein_coding" "80394","No alias","Selaginella moellendorffii ","Protein of unknown function (DUF3754)","protein_coding" "82832","No alias","Selaginella moellendorffii ","F-box family protein","protein_coding" "84215","No alias","Selaginella moellendorffii ","Class II aminoacyl-tRNA and biotin synthetases superfamily protein","protein_coding" "84330","No alias","Selaginella moellendorffii ","IND1(iron-sulfur protein required for NADH dehydrogenase)-like","protein_coding" "85340","No alias","Selaginella moellendorffii ","like AUXIN RESISTANT 1","protein_coding" "85478","No alias","Selaginella moellendorffii ","EPS15 homology domain 1","protein_coding" "88206","No alias","Selaginella moellendorffii ","Function unknown","protein_coding" "88682","No alias","Selaginella moellendorffii ","ubiquitin-specific protease 27","protein_coding" "89452","No alias","Selaginella moellendorffii ","folate transporter 1","protein_coding" "92622","No alias","Selaginella moellendorffii ","Glycosyl hydrolase family 47 protein","protein_coding" "92810","No alias","Selaginella moellendorffii ","glutamate receptor 3.3","protein_coding" "92851","No alias","Selaginella moellendorffii ","Pentatricopeptide repeat (PPR) superfamily protein","protein_coding" "A4A49_20033","No alias","Nicotiana attenuata","atp-dependent dna helicase 2 subunit ku70","protein_coding" "A4A49_34355","No alias","Nicotiana attenuata","atp-dependent dna helicase 2 subunit ku80","protein_coding" "AC148152.3_FG008","No alias","Zea mays","Glycosyl hydrolase superfamily protein","protein_coding" "AC185605.3_FG003","No alias","Zea mays","Function unknown","protein_coding" "AC194005.3_FG004","No alias","Zea mays","Function unknown","protein_coding" "AC197578.4_FG001","No alias","Zea mays","Glycosyl hydrolase family protein","protein_coding" "AC200124.3_FG002","No alias","Zea mays","Function unknown","protein_coding" "AC203966.5_FG001","No alias","Zea mays","Function unknown","protein_coding" "AC207628.4_FG009","No alias","Zea mays","DNAse I-like superfamily protein","protein_coding" "AC210013.4_FG018","No alias","Zea mays","Chaperonin-like RbcX protein","protein_coding" "AC216731.3_FG001","No alias","Zea mays","ROOT HAIR DEFECTIVE6","protein_coding" "AC234154.1_FG008","No alias","Zea mays","lecithin:cholesterol acyltransferase 3","protein_coding" "AC234159.1_FG002","No alias","Zea mays","Mitochondrial substrate carrier family protein","protein_coding" "At1g05910","No alias","Arabidopsis thaliana","ATPase family AAA domain-containing protein At1g05910 [Source:UniProtKB/Swiss-Prot;Acc:F4IAE9]","protein_coding" "At1g06220","No alias","Arabidopsis thaliana","110 kDa U5 small nuclear ribonucleoprotein component CLO [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC5]","protein_coding" "At1g06670","No alias","Arabidopsis thaliana","DExH-box ATP-dependent RNA helicase DExH2 [Source:UniProtKB/Swiss-Prot;Acc:F4IDQ6]","protein_coding" "At1g14440","No alias","Arabidopsis thaliana","Zinc-finger homeodomain protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9S0]","protein_coding" "At1g14460","No alias","Arabidopsis thaliana","Protein STICHEL-like 1 [Source:UniProtKB/Swiss-Prot;Acc:F4HW65]","protein_coding" "At1g15700","No alias","Arabidopsis thaliana","ATP synthase gamma chain 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q01909]","protein_coding" "At1g16870","No alias","Arabidopsis thaliana","Mitochondrial 28S ribosomal protein S29-like protein [Source:UniProtKB/TrEMBL;Acc:Q8W4K2]","protein_coding" "At1g16970","No alias","Arabidopsis thaliana","KU70 [Source:UniProtKB/TrEMBL;Acc:A0A178WAS1]","protein_coding" "At1g17070","No alias","Arabidopsis thaliana","Septin and tuftelin-interacting protein 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHG6]","protein_coding" "At1g18370","No alias","Arabidopsis thaliana","Kinesin-like protein KIN-7A [Source:UniProtKB/Swiss-Prot;Acc:Q8S905]","protein_coding" "At1g23180","No alias","Arabidopsis thaliana","ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8H0U3]","protein_coding" "At1g24510","No alias","Arabidopsis thaliana","T-complex protein 1 subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:O04450]","protein_coding" "At1g26150","No alias","Arabidopsis thaliana","Proline-rich receptor-like protein kinase PERK10 [Source:UniProtKB/Swiss-Prot;Acc:Q9C660]","protein_coding" "At1g26520","No alias","Arabidopsis thaliana","At1g26520 [Source:UniProtKB/TrEMBL;Acc:Q500W8]","protein_coding" "At1g31930","No alias","Arabidopsis thaliana","Extra-large guanine nucleotide-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C516]","protein_coding" "At1g33410","No alias","Arabidopsis thaliana","SAR1 [Source:UniProtKB/TrEMBL;Acc:A0A178WF46]","protein_coding" "At1g43170","No alias","Arabidopsis thaliana","60S ribosomal protein L3-1 [Source:UniProtKB/Swiss-Prot;Acc:P17094]","protein_coding" "At1g44780","No alias","Arabidopsis thaliana","Translation initiation factor [Source:UniProtKB/TrEMBL;Acc:Q5Q0F0]","protein_coding" "At1g44900","No alias","Arabidopsis thaliana","DNA replication licensing factor MCM2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPD9]","protein_coding" "At1g48050","No alias","Arabidopsis thaliana","ATP-dependent DNA helicase 2 subunit KU80 [Source:UniProtKB/Swiss-Prot;Acc:Q9FQ09]","protein_coding" "At1g55020","No alias","Arabidopsis thaliana","Linoleate 9S-lipoxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q06327]","protein_coding" "At1g56230","No alias","Arabidopsis thaliana","Enolase (DUF1399) [Source:UniProtKB/TrEMBL;Acc:Q9C7J8]","protein_coding" "At1g57820","No alias","Arabidopsis thaliana","E3 ubiquitin-protein ligase ORTHRUS 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYZ0]","protein_coding" "At1g64880","No alias","Arabidopsis thaliana","At1g64880 [Source:UniProtKB/TrEMBL;Acc:Q6GKU7]","protein_coding" "At1g69070","No alias","Arabidopsis thaliana","FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nop14-like protein (InterPr /.../07276); Has 69842 Blast hits to 35213 proteins in 1572 species: Archae - 363; Bacteria - 20593; Metazoa - 20851; Fungi - 8010; Plants - 2912; Viruses - 517; Other Eukaryotes - 16596 (source: NCBI BLink). [Source:TAIR;Acc:AT1G69070]","protein_coding" "At1g69200","No alias","Arabidopsis thaliana","Fructokinase-like 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4I0K2]","protein_coding" "At1g71210","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At1g71210, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GZA6]","protein_coding" "At1g76120","No alias","Arabidopsis thaliana","tRNA pseudouridine synthase [Source:UniProtKB/TrEMBL;Acc:Q9SGS1]","protein_coding" "At1g77550","No alias","Arabidopsis thaliana","At1g77550 [Source:UniProtKB/TrEMBL;Acc:Q6IDC7]","protein_coding" "At1g77580","No alias","Arabidopsis thaliana","Filament-like plant protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAP9]","protein_coding" "At1g78430","No alias","Arabidopsis thaliana","RIP4 [Source:UniProtKB/TrEMBL;Acc:A0A178W8E0]","protein_coding" "At1g80870","No alias","Arabidopsis thaliana","Putative receptor-like protein kinase At1g80870 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH3]","protein_coding" "At2g18220","No alias","Arabidopsis thaliana","Nucleolar complex protein 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPV5]","protein_coding" "At2g19385","No alias","Arabidopsis thaliana","At2g19385 [Source:UniProtKB/TrEMBL;Acc:Q8S8S8]","protein_coding" "At2g20290","No alias","Arabidopsis thaliana","Myosin-13 [Source:UniProtKB/Swiss-Prot;Acc:F4IUG9]","protein_coding" "At2g28620","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT2G28620]","protein_coding" "At2g31190","No alias","Arabidopsis thaliana","WXR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VQM6]","protein_coding" "At2g34640","No alias","Arabidopsis thaliana","Protein PLASTID TRANSCRIPTIONALLY ACTIVE 12, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4IHY7]","protein_coding" "At2g40660","No alias","Arabidopsis thaliana","Nucleic acid-binding, OB-fold-like protein [Source:UniProtKB/TrEMBL;Acc:Q93VB0]","protein_coding" "At2g47410","No alias","Arabidopsis thaliana","WD40/YVTN repeat-like-containing domain;Bromodomain [Source:TAIR;Acc:AT2G47410]","protein_coding" "At2g47500","No alias","Arabidopsis thaliana","Kinesin-like protein KIN-14I [Source:UniProtKB/Swiss-Prot;Acc:F4IL57]","protein_coding" "At3g01160","No alias","Arabidopsis thaliana","Pre-rRNA-processing ESF1-like protein [Source:UniProtKB/TrEMBL;Acc:Q9MAC6]","protein_coding" "At3g02450","No alias","Arabidopsis thaliana","Probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M895]","protein_coding" "At3g11964","No alias","Arabidopsis thaliana","rRNA biogenesis protein RRP5 [Source:UniProtKB/Swiss-Prot;Acc:F4J8K6]","protein_coding" "At3g12340","No alias","Arabidopsis thaliana","Peptidyl-prolyl cis-trans isomerase FKBP43 [Source:UniProtKB/Swiss-Prot;Acc:F4J9Q6]","protein_coding" "At3g13860","No alias","Arabidopsis thaliana","Chaperonin CPN60-like 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93ZM7]","protein_coding" "At3g14270","No alias","Arabidopsis thaliana","1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LUM0]","protein_coding" "At3g15010","No alias","Arabidopsis thaliana","UBP1-associated protein 2C [Source:UniProtKB/Swiss-Prot;Acc:Q9LKA4]","protein_coding" "At3g15590","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At3g15590, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP6]","protein_coding" "At3g16290","No alias","Arabidopsis thaliana","Probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A8MPR5]","protein_coding" "At3g16840","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VJW0]","protein_coding" "At3g17830","No alias","Arabidopsis thaliana","At3g17830 [Source:UniProtKB/TrEMBL;Acc:Q058J9]","protein_coding" "At3g18070","No alias","Arabidopsis thaliana","Beta-glucosidase 43 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV34]","protein_coding" "At3g20150","No alias","Arabidopsis thaliana","Kinesin-like protein KIN-12F [Source:UniProtKB/Swiss-Prot;Acc:F4JDI6]","protein_coding" "At3g24080","No alias","Arabidopsis thaliana","KRR1 family protein [Source:UniProtKB/TrEMBL;Acc:F4J5D3]","protein_coding" "At3g24320","No alias","Arabidopsis thaliana","DNA mismatch repair protein MSH1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84LK0]","protein_coding" "At3g27640","No alias","Arabidopsis thaliana","Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94C55]","protein_coding" "At3g54980","No alias","Arabidopsis thaliana","Pentatricopeptide repeat-containing protein At3g54980, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SV46]","protein_coding" "At3g55200","No alias","Arabidopsis thaliana","Spliceosome-associated protein 130 B [Source:UniProtKB/Swiss-Prot;Acc:P0DKL6]","protein_coding" "At3g56870","No alias","Arabidopsis thaliana","Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q5XVA1]","protein_coding" "At3g62300","No alias","Arabidopsis thaliana","DOMAIN OF UNKNOWN FUNCTION 724 7 [Source:TAIR;Acc:AT3G62300]","protein_coding" "At3g63300","No alias","Arabidopsis thaliana","VAN3-binding protein [Source:UniProtKB/Swiss-Prot;Acc:Q8W4K5]","protein_coding" "At4g10480","No alias","Arabidopsis thaliana","Putative alpha NAC [Source:UniProtKB/TrEMBL;Acc:Q0WWN5]","protein_coding" "At4g13750","No alias","Arabidopsis thaliana","Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein [Source:UniProtKB/TrEMBL;Acc:F4JTS8]","protein_coding" "At4g17540","No alias","Arabidopsis thaliana","Dynamin [Source:UniProtKB/TrEMBL;Acc:Q8RWF2]","protein_coding" "At4g18030","No alias","Arabidopsis thaliana","Probable methyltransferase PMT14 [Source:UniProtKB/Swiss-Prot;Acc:Q94EJ6]","protein_coding" "At4g18130","No alias","Arabidopsis thaliana","Phytochrome E [Source:UniProtKB/Swiss-Prot;Acc:P42498]","protein_coding" "At4g26970","No alias","Arabidopsis thaliana","Aconitate hydratase [Source:UniProtKB/TrEMBL;Acc:A0A178UVE5]","protein_coding" "At4g37740","No alias","Arabidopsis thaliana","GRF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UXW8]","protein_coding" "At5g08020","No alias","Arabidopsis thaliana","Replication protein A 70 kDa DNA-binding subunit B [Source:UniProtKB/Swiss-Prot;Acc:Q9SD82]","protein_coding" "At5g08420","No alias","Arabidopsis thaliana","KRR1 small subunit processome component [Source:UniProtKB/TrEMBL;Acc:A0A178UIZ9]","protein_coding" "At5g08600","No alias","Arabidopsis thaliana","U3 ribonucleoprotein (Utp) family protein [Source:UniProtKB/TrEMBL;Acc:F4KB50]","protein_coding" "At5g09860","No alias","Arabidopsis thaliana","THO complex subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VM9]","protein_coding" "At5g13680","No alias","Arabidopsis thaliana","Elongator complex protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNA4]","protein_coding" "At5g20890","No alias","Arabidopsis thaliana","T-complex protein 1 subunit beta [Source:UniProtKB/Swiss-Prot;Acc:Q940P8]","protein_coding" "At5g24620","No alias","Arabidopsis thaliana","Pathogenesis-related thaumatin superfamily protein [Source:TAIR;Acc:AT5G24620]","protein_coding" "At5g27540","No alias","Arabidopsis thaliana","Mitochondrial Rho GTPase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RXF8]","protein_coding" "At5g38720","No alias","Arabidopsis thaliana","unknown protein; Has 13419 Blast hits to 9093 proteins in 698 species: Archae - 38; Bacteria - 1038; Metazoa - 4949; Fungi - 1086; Plants - 485; Viruses - 44; Other Eukaryotes - 5779 (source: NCBI BLink). [Source:TAIR;Acc:AT5G38720]","protein_coding" "At5g38840","No alias","Arabidopsis thaliana","Kanadaptin-like protein [Source:UniProtKB/TrEMBL;Acc:Q0WW94]","protein_coding" "At5g39490","No alias","Arabidopsis thaliana","Probable F-box protein At5g39490 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLY7]","protein_coding" "At5g39840","No alias","Arabidopsis thaliana","DExH-box ATP-dependent RNA helicase DExH18, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4KFV7]","protein_coding" "At5g39960","No alias","Arabidopsis thaliana","GTP-binding protein [Source:UniProtKB/TrEMBL;Acc:F4KFX1]","protein_coding" "At5g41140","No alias","Arabidopsis thaliana","Myosin heavy chain-related protein [Source:UniProtKB/TrEMBL;Acc:Q9FLL5]","protein_coding" "At5g44740","No alias","Arabidopsis thaliana","DNA polymerase eta [Source:UniProtKB/Swiss-Prot;Acc:Q8H2D5]","protein_coding" "At5g46240","No alias","Arabidopsis thaliana","At5g46240 [Source:UniProtKB/TrEMBL;Acc:Q67YG3]","protein_coding" "At5g46280","No alias","Arabidopsis thaliana","DNA replication licensing factor MCM3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL33]","protein_coding" "At5g49160","No alias","Arabidopsis thaliana","DNA (cytosine-5)-methyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:P34881]","protein_coding" "At5g50890","No alias","Arabidopsis thaliana","Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FI59]","protein_coding" "At5g51750","No alias","Arabidopsis thaliana","Subtilisin-like protease SBT1.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLI4]","protein_coding" "At5g60040","No alias","Arabidopsis thaliana","DNA-directed RNA polymerase subunit [Source:UniProtKB/TrEMBL;Acc:F4JXF8]","protein_coding" "At5g61000","No alias","Arabidopsis thaliana","Replication protein A subunit [Source:UniProtKB/TrEMBL;Acc:A0A178UJ91]","protein_coding" "At5g61300","No alias","Arabidopsis thaliana","Gb [Source:UniProtKB/TrEMBL;Acc:Q9FLK3]","protein_coding" "At5g63320","No alias","Arabidopsis thaliana","NPX1 [Source:UniProtKB/TrEMBL;Acc:A0A178UIE5]","protein_coding" "At5g63960","No alias","Arabidopsis thaliana","DNA polymerase [Source:UniProtKB/TrEMBL;Acc:F4KC69]","protein_coding" "At5g67100","No alias","Arabidopsis thaliana","DNA polymerase alpha catalytic subunit [Source:UniProtKB/Swiss-Prot;Acc:Q9FHA3]","protein_coding" "At5g67240","No alias","Arabidopsis thaliana","SDN3 [Source:UniProtKB/TrEMBL;Acc:A0A178UGK8]","protein_coding" "Bradi1g01007","No alias","Brachypodium distachyon","Ku80 family protein","protein_coding" "Bradi1g02740","No alias","Brachypodium distachyon","RNA cyclase family protein","protein_coding" "Bradi1g04570","No alias","Brachypodium distachyon","ribosomal RNA processing 4","protein_coding" "Bradi1g15900","No alias","Brachypodium distachyon","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding" "Bradi1g15970","No alias","Brachypodium distachyon","Per1-like family protein","protein_coding" "Bradi1g17070","No alias","Brachypodium distachyon","lon protease 1","protein_coding" "Bradi1g21470","No alias","Brachypodium distachyon","bromo-adjacent homology (BAH) domain-containing protein","protein_coding" "Bradi1g27180","No alias","Brachypodium distachyon","ubiquinol-cytochrome C chaperone family protein","protein_coding" "Bradi1g39090","No alias","Brachypodium distachyon","TCP-1/cpn60 chaperonin family protein","protein_coding" "Bradi1g43120","No alias","Brachypodium distachyon","decoy","protein_coding" "Bradi1g47080","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi1g51240","No alias","Brachypodium distachyon","Small GTP-binding protein","protein_coding" "Bradi1g51480","No alias","Brachypodium distachyon","Ribosomal RNA processing Brix domain protein","protein_coding" "Bradi1g55250","No alias","Brachypodium distachyon","KU70 homolog","protein_coding" "Bradi1g60280","No alias","Brachypodium distachyon","3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2","protein_coding" "Bradi1g62007","No alias","Brachypodium distachyon","alpha-N-acetylglucosaminidase family / NAGLU family","protein_coding" "Bradi1g62590","No alias","Brachypodium distachyon","ARM repeat superfamily protein","protein_coding" "Bradi1g63020","No alias","Brachypodium distachyon","FUMARASE 2","protein_coding" "Bradi1g64210","No alias","Brachypodium distachyon","L-Aspartase-like family protein","protein_coding" "Bradi1g66130","No alias","Brachypodium distachyon","ARM repeat superfamily protein","protein_coding" "Bradi1g67050","No alias","Brachypodium distachyon","Leucine-rich repeat protein kinase family protein","protein_coding" "Bradi1g75910","No alias","Brachypodium distachyon","voltage dependent anion channel 4","protein_coding" "Bradi1g76700","No alias","Brachypodium distachyon","GTP-binding family protein","protein_coding" "Bradi1g77470","No alias","Brachypodium distachyon","homolog of yeast oxidase assembly 1 (OXA1)","protein_coding" "Bradi1g77850","No alias","Brachypodium distachyon","DHFS-FPGS homolog B","protein_coding" "Bradi2g10270","No alias","Brachypodium distachyon","E1 C-terminal related 1","protein_coding" "Bradi2g10350","No alias","Brachypodium distachyon","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding" "Bradi2g13157","No alias","Brachypodium distachyon","DNAJ heat shock N-terminal domain-containing protein","protein_coding" "Bradi2g18960","No alias","Brachypodium distachyon","transducin family protein / WD-40 repeat family protein","protein_coding" "Bradi2g20580","No alias","Brachypodium distachyon","nuclear assembly factor 1","protein_coding" "Bradi2g29750","No alias","Brachypodium distachyon","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding" "Bradi2g40800","No alias","Brachypodium distachyon","DEAD/DEAH box RNA helicase family protein","protein_coding" "Bradi2g41957","No alias","Brachypodium distachyon","zinc ion binding","protein_coding" "Bradi2g43890","No alias","Brachypodium distachyon","glycosyl transferase family 1 protein","protein_coding" "Bradi2g52830","No alias","Brachypodium distachyon","las1-like family protein","protein_coding" "Bradi2g52910","No alias","Brachypodium distachyon","embryo sac development arrest 14","protein_coding" "Bradi2g54390","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding" "Bradi3g02680","No alias","Brachypodium distachyon","Phosphoribosyltransferase family protein","protein_coding" "Bradi3g02740","No alias","Brachypodium distachyon","protein dimerizations","protein_coding" "Bradi3g02932","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi3g04130","No alias","Brachypodium distachyon","TCP-1/cpn60 chaperonin family protein","protein_coding" "Bradi3g04430","No alias","Brachypodium distachyon","TCP-1/cpn60 chaperonin family protein","protein_coding" "Bradi3g14412","No alias","Brachypodium distachyon","NHL domain-containing protein","protein_coding" "Bradi3g19910","No alias","Brachypodium distachyon","aberrant lateral root formation 4","protein_coding" "Bradi3g27252","No alias","Brachypodium distachyon","Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain","protein_coding" "Bradi3g29530","No alias","Brachypodium distachyon","DNA ligase 1","protein_coding" "Bradi3g31760","No alias","Brachypodium distachyon","transferases;nucleotidyltransferases","protein_coding" "Bradi3g33860","No alias","Brachypodium distachyon","TCP-1/cpn60 chaperonin family protein","protein_coding" "Bradi3g38220","No alias","Brachypodium distachyon","ZPR1 zinc-finger domain protein","protein_coding" "Bradi3g38350","No alias","Brachypodium distachyon","Tudor/PWWP/MBT superfamily protein","protein_coding" "Bradi3g41230","No alias","Brachypodium distachyon","Serine/threonine-protein kinase Rio1","protein_coding" "Bradi3g46800","No alias","Brachypodium distachyon","NAP1-related protein 2","protein_coding" "Bradi3g48350","No alias","Brachypodium distachyon","LETM1-like protein","protein_coding" "Bradi3g49580","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi3g51380","No alias","Brachypodium distachyon","Protein kinase superfamily protein","protein_coding" "Bradi3g52830","No alias","Brachypodium distachyon","AAA-type ATPase family protein","protein_coding" "Bradi3g56497","No alias","Brachypodium distachyon","RNA polymerase II, Rpb4, core protein","protein_coding" "Bradi3g59640","No alias","Brachypodium distachyon","Glycosyl hydrolase family 47 protein","protein_coding" "Bradi4g01080","No alias","Brachypodium distachyon","Noc2p family","protein_coding" "Bradi4g02430","No alias","Brachypodium distachyon","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding" "Bradi4g06370","No alias","Brachypodium distachyon","HEAT SHOCK PROTEIN 89.1","protein_coding" "Bradi4g10447","No alias","Brachypodium distachyon","ribosomal protein L5","protein_coding" "Bradi4g21680","No alias","Brachypodium distachyon","Function unknown","protein_coding" "Bradi4g22020","No alias","Brachypodium distachyon","Serine protease inhibitor (SERPIN) family protein","protein_coding" "Bradi4g27550","No alias","Brachypodium distachyon","Glucose-6-phosphate/phosphate translocator-related","protein_coding" "Bradi4g32280","No alias","Brachypodium distachyon","Sec23/Sec24 protein transport family protein","protein_coding" "Bradi4g38700","No alias","Brachypodium distachyon","U-box domain-containing protein kinase family protein","protein_coding" "Bradi4g42210","No alias","Brachypodium distachyon","Polynucleotidyl transferase, ribonuclease H-like superfamily protein","protein_coding" "Bradi5g01890","No alias","Brachypodium distachyon","eukaryotic initiation factor 3 gamma subunit family protein","protein_coding" "Bradi5g05650","No alias","Brachypodium distachyon","ARM repeat superfamily protein","protein_coding" "Bradi5g17370","No alias","Brachypodium distachyon","GATA transcription factor 26","protein_coding" "Bradi5g17750","No alias","Brachypodium distachyon","T-complex protein 1 alpha subunit","protein_coding" "Bradi5g22790","No alias","Brachypodium distachyon","ARM repeat superfamily protein","protein_coding" "Bradi5g26890","No alias","Brachypodium distachyon","isopropylmalate dehydrogenase 2","protein_coding" "Brara.A00004.1","No alias","Brassica rapa","alpha-class expansin","protein_coding" "Brara.A00182.1","No alias","Brassica rapa","histone chaperone *(NASP)","protein_coding" "Brara.A00286.1","No alias","Brassica rapa","SRPK protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.A01014.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A01298.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A01522.1","No alias","Brassica rapa","GeBP-type transcription factor","protein_coding" "Brara.A01778.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A01901.1","No alias","Brassica rapa","component *(NDUFB1/MNLL) of NADH dehydrogenase beta subcomplex","protein_coding" "Brara.A02164.1","No alias","Brassica rapa","E3 ubiquitin ligase","protein_coding" "Brara.A03204.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.A03706.1","No alias","Brassica rapa","phospholipase-D *(PLD-zeta)","protein_coding" "Brara.A03882.1","No alias","Brassica rapa","AS2/LOB-type transcription factor","protein_coding" "Brara.B00571.1","No alias","Brassica rapa","mannosyltransferase-III *(PIG-B)","protein_coding" "Brara.B00887.1","No alias","Brassica rapa","glutaredoxin","protein_coding" "Brara.B00920.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.B01084.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.B01526.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.B01574.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.B01842.1","No alias","Brassica rapa","protein kinase component *(SIK1) of RAM signalling pathway & MAPKKK-kinase protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.B02137.1","No alias","Brassica rapa","endoribonuclease *(RNase Z)","protein_coding" "Brara.B03072.1","No alias","Brassica rapa","LRR-IX protein kinase & protein kinase *(TMK) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.B03158.1","No alias","Brassica rapa","pectin methyltransferase *(QUA2) involved in pectin-dependent cell adhesion","protein_coding" "Brara.B03936.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.C01078.1","No alias","Brassica rapa","component *(6kDa/ATP6) of ATP synthase membrane MF0 subcomplex","protein_coding" "Brara.C02893.1","No alias","Brassica rapa","cargo receptor protein *(PUX7/8/9/13)","protein_coding" "Brara.C03297.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.C04457.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.C04458.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.D00235.1","No alias","Brassica rapa","catalytic component *(PP2A-phosphatase) of TTP preprophase band formation complex & catalytic component C of PP2A phosphatase complexes & EC_3.1 hydrolase acting on ester bond","protein_coding" "Brara.D00395.1","No alias","Brassica rapa","RNA splicing factor *(SCL28/30/33)","protein_coding" "Brara.D01433.1","No alias","Brassica rapa","LRR-II protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.D01587.1","No alias","Brassica rapa","tRNA cytidine-methyltransferase *(TRM140)","protein_coding" "Brara.D01605.1","No alias","Brassica rapa","alpha-type-7 component *(PAG) of 26S proteasome & EC_3.4 hydrolase acting on peptide bond (peptidase)","protein_coding" "Brara.D02151.1","No alias","Brassica rapa","LRR-XIIIa protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.D02520.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.E00850.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.E00939.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.E01061.1","No alias","Brassica rapa","E3 ubiquitin protein ligase *(PUB60) & component *(MAC3) of MAC spliceosome-associated complex & substrate adaptor *(DCAF1) of CUL4-DDB1 E3 ubiquitin ligase complex","protein_coding" "Brara.E01285.1","No alias","Brassica rapa","LAV-VAL-type transcription factor & regulatory protein *(VAL) of PRC1 complex","protein_coding" "Brara.E01476.1","No alias","Brassica rapa","beta-1,3-galactosyltransferase *(B3GALT)","protein_coding" "Brara.E02889.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.E02929.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.F00931.1","No alias","Brassica rapa","ARF-GTPase guanyl-nucleotide exchange factor *(GBF)","protein_coding" "Brara.F01186.1","No alias","Brassica rapa","component *(KU70) of Ku70-Ku80 helicase complex","protein_coding" "Brara.F01567.1","No alias","Brassica rapa","oxoguanine DNA glycosylase *(OGG1)","protein_coding" "Brara.F02573.1","No alias","Brassica rapa","component *(PFD5) of Prefoldin co-chaperone complex","protein_coding" "Brara.F02781.1","No alias","Brassica rapa","WRKY-type transcription factor","protein_coding" "Brara.F03047.1","No alias","Brassica rapa","recombination mediator *(RAD52)","protein_coding" "Brara.F03318.1","No alias","Brassica rapa","scaffold component A of PP2A phosphatase complexes & scaffold component *(PP2A-phosphatase) of TTP preprophase band formation complex","protein_coding" "Brara.G00015.1","No alias","Brassica rapa","beta-class expansin","protein_coding" "Brara.G00030.1","No alias","Brassica rapa","regulatory protein *(SCAMP) of exocytic trafficking","protein_coding" "Brara.G00214.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.G01021.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.G01235.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.G01506.1","No alias","Brassica rapa","protein S-acyltransferase *(PAT1-9)","protein_coding" "Brara.G01687.1","No alias","Brassica rapa","copper chaperone *(ATX/CCH)","protein_coding" "Brara.G02120.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.G02412.1","No alias","Brassica rapa","serine hydroxymethyltransferase *(SHM) & serine hydroxymethyltransferase & EC_2.1 transferase transferring one-carbon group","protein_coding" "Brara.G02778.1","No alias","Brassica rapa","carrier protein *(CIA2/AE7) of cytosolic CIA system transfer phase","protein_coding" "Brara.G02865.1","No alias","Brassica rapa","E3 ubiquitin ligase","protein_coding" "Brara.G02925.1","No alias","Brassica rapa","class tau glutathione S-transferase","protein_coding" "Brara.G02974.1","No alias","Brassica rapa","EC_2.3 acyltransferase","protein_coding" "Brara.G03608.1","No alias","Brassica rapa","component *(APC6) of (APC/C)-dependent ubiquitination arc lamp subcomplex","protein_coding" "Brara.H00032.1","No alias","Brassica rapa","substrate adaptor *(AHT) of CUL3-BTB E3 ubiquitin ligase complex","protein_coding" "Brara.H00051.1","No alias","Brassica rapa","TATA-box-binding component of TFIId basal transcription regulation complex & TATA-box-binding protein of RNA polymerase III-dependent transcription","protein_coding" "Brara.H00115.1","No alias","Brassica rapa","subgroup ERF-VII transcription factor & transcription factor component *(HRE/RAP2.12) of oxygen-sensor activity","protein_coding" "Brara.H00179.1","No alias","Brassica rapa","HD-ZIP III-type transcription factor","protein_coding" "Brara.H00381.1","No alias","Brassica rapa","component *(KU80) of Ku70-Ku80 helicase complex","protein_coding" "Brara.H00407.1","No alias","Brassica rapa","component *(SDH5) of succinate dehydrogenase complex","protein_coding" "Brara.H00494.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.H00518.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.H00698.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.H01628.1","No alias","Brassica rapa","splicing factor *(SR45a)","protein_coding" "Brara.H01715.1","No alias","Brassica rapa","MYB class-R2R3 subgroup-22/23 transcription factor","protein_coding" "Brara.H02124.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.H02395.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.H02805.1","No alias","Brassica rapa","STAR-type post-transcriptionally regulatory factor","protein_coding" "Brara.H02905.1","No alias","Brassica rapa","protein factor (RAD51D) of single-strand annealing (SSA) pathway","protein_coding" "Brara.I00225.1","No alias","Brassica rapa","clade E phosphatase","protein_coding" "Brara.I00320.1","No alias","Brassica rapa","subfamily ABCB transporter","protein_coding" "Brara.I00427.1","No alias","Brassica rapa","SCSsister-clade calcium sensor","protein_coding" "Brara.I00926.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.I01389.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.I01756.1","No alias","Brassica rapa","small subunit of U2AF pre-RNA splicing auxiliary factor complex","protein_coding" "Brara.I02040.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.I02239.1","No alias","Brassica rapa","microtubule-stabilizing factor *(WDL)","protein_coding" "Brara.I02847.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.I04985.1","No alias","Brassica rapa","methylation reader Alfin of PRC1 complex","protein_coding" "Brara.I05484.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J00155.1","No alias","Brassica rapa","bHLH-type transcription factor","protein_coding" "Brara.J00283.1","No alias","Brassica rapa","MAP3K-RAF protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.J00450.1","No alias","Brassica rapa","fission factor *(PMD) & lysine-rich arabinogalactan protein","protein_coding" "Brara.J00463.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J00470.1","No alias","Brassica rapa","LRR-VIII-1 protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.J00528.1","No alias","Brassica rapa","metabolite transporter *(DTX)","protein_coding" "Brara.J00820.1","No alias","Brassica rapa","EC_2.5 transferase transferring alkyl or aryl group, other than methyl group & spermine synthase","protein_coding" "Brara.J01314.1","No alias","Brassica rapa","methylation reader *(MBD5-6)","protein_coding" "Brara.J01569.1","No alias","Brassica rapa","protein de-S-acylation enzyme *(ABAPT)","protein_coding" "Brara.J01719.1","No alias","Brassica rapa","RLCK-V receptor-like protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Brara.J01781.1","No alias","Brassica rapa","NADH","protein_coding" "Brara.J02116.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.J02616.1","No alias","Brassica rapa","regulatory component *(GCP-WD/NEDD1) of gamma-Tubulin ring complex","protein_coding" "Brara.J02765.1","No alias","Brassica rapa","calcium sensor *(CML)","protein_coding" "Brara.J02820.1","No alias","Brassica rapa","starch granule initiation factor *(PTST3)","protein_coding" "Brara.K00013.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.K00126.1","No alias","Brassica rapa","subunit e of V-type ATPase membrane V0 subcomplex","protein_coding" "Brara.K00577.1","No alias","Brassica rapa","GeBP-type transcription factor","protein_coding" "Brara.K00730.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.K00846.1","No alias","Brassica rapa","PRC2-VRN-interacting factor (VIN3/VEL) of PRC2 histone methylation complex","protein_coding" "Brara.K01532.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.K01576.1","No alias","Brassica rapa","Unknown function","protein_coding" "Brara.K01672.1","No alias","Brassica rapa","Unknown function","protein_coding" "Cre01.g002861","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre01.g009731","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre01.g011950","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre01.g019051","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre01.g032450","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre01.g034650","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre01.g045150","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre01.g052500","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre01.g053200","No alias","Chlamydomonas reinhardtii","tyrosyl-DNA phosphodiesterase-related","protein_coding" "Cre01.g054600","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre01.g055966","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre02.g089050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre02.g089850","No alias","Chlamydomonas reinhardtii","high mobility group","protein_coding" "Cre02.g095124","No alias","Chlamydomonas reinhardtii","ubiquitin-specific protease 17","protein_coding" "Cre02.g096050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre02.g099900","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre02.g101050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre02.g105050","No alias","Chlamydomonas reinhardtii","double-stranded DNA binding","protein_coding" "Cre02.g107600","No alias","Chlamydomonas reinhardtii","glucuronokinase G","protein_coding" "Cre02.g108800","No alias","Chlamydomonas reinhardtii","Heat shock protein DnaJ with tetratricopeptide repeat","protein_coding" "Cre02.g113751","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre02.g115300","No alias","Chlamydomonas reinhardtii","Transmembrane amino acid transporter family protein","protein_coding" "Cre02.g119400","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre03.g154425","No alias","Chlamydomonas reinhardtii","CLIP-associated protein","protein_coding" "Cre03.g154500","No alias","Chlamydomonas reinhardtii","SAND family protein","protein_coding" "Cre03.g172650","No alias","Chlamydomonas reinhardtii","tubulin beta-5 chain","protein_coding" "Cre03.g183800","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre03.g192550","No alias","Chlamydomonas reinhardtii","DNA repair-recombination protein (RAD50)","protein_coding" "Cre03.g197800","No alias","Chlamydomonas reinhardtii","myosin XI B","protein_coding" "Cre03.g201327","No alias","Chlamydomonas reinhardtii","NAD(P)-linked oxidoreductase superfamily protein","protein_coding" "Cre03.g202250","No alias","Chlamydomonas reinhardtii","DNA-directed DNA polymerases","protein_coding" "Cre03.g202875","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre03.g203451","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre03.g207713","No alias","Chlamydomonas reinhardtii","isoamylase 3","protein_coding" "Cre03.g212417","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre03.g212753","No alias","Chlamydomonas reinhardtii","Protein of unknown function DUF455","protein_coding" "Cre04.g212700","No alias","Chlamydomonas reinhardtii","squamosa promoter binding protein-like 9","protein_coding" "Cre04.g217935","No alias","Chlamydomonas reinhardtii","ARM repeat superfamily protein","protein_coding" "Cre04.g217946","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre04.g218600","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre04.g220250","No alias","Chlamydomonas reinhardtii","ARM repeat protein interacting with ABF2","protein_coding" "Cre04.g226200","No alias","Chlamydomonas reinhardtii","NIMA-related kinase 2","protein_coding" "Cre05.g240100","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre05.g240500","No alias","Chlamydomonas reinhardtii","Peptidase C78, ubiquitin fold modifier-specific peptidase 1/ 2","protein_coding" "Cre06.g249650","No alias","Chlamydomonas reinhardtii","C-terminal domain phosphatase-like 3","protein_coding" "Cre06.g269650","No alias","Chlamydomonas reinhardtii","Carbohydrate-binding-like fold","protein_coding" "Cre06.g278197","No alias","Chlamydomonas reinhardtii","Cysteine proteinases superfamily protein","protein_coding" "Cre06.g278243","No alias","Chlamydomonas reinhardtii","GTP cyclohydrolase I","protein_coding" "Cre06.g278269","No alias","Chlamydomonas reinhardtii","PHD finger family protein","protein_coding" "Cre06.g281900","No alias","Chlamydomonas reinhardtii","ZIP metal ion transporter family","protein_coding" "Cre06.g302850","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre07.g344450","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre07.g344702","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre07.g346317","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre07.g347600","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre07.g350800","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre07.g357650","No alias","Chlamydomonas reinhardtii","PHD finger protein-related","protein_coding" "Cre08.g373916","No alias","Chlamydomonas reinhardtii","exoribonuclease 2","protein_coding" "Cre08.g376740","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre08.g378000","No alias","Chlamydomonas reinhardtii","decapping 5-like","protein_coding" "Cre09.g388450","No alias","Chlamydomonas reinhardtii","glycosyltransferase family protein 47","protein_coding" "Cre09.g390000","No alias","Chlamydomonas reinhardtii","chromatin remodeling factor17","protein_coding" "Cre09.g390550","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre09.g391000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre09.g393300","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre09.g396475","No alias","Chlamydomonas reinhardtii","RING domain ligase1","protein_coding" "Cre09.g397845","No alias","Chlamydomonas reinhardtii","MUTS homolog 6","protein_coding" "Cre09.g402182","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre10.g418250","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre10.g423800","No alias","Chlamydomonas reinhardtii","Ku80 family protein","protein_coding" "Cre10.g440800","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre10.g446600","No alias","Chlamydomonas reinhardtii","methyl-CPG-binding domain 9","protein_coding" "Cre10.g448000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre10.g448300","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre10.g451050","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre10.g463700","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre11.g467597","No alias","Chlamydomonas reinhardtii","pleiotropic drug resistance 10","protein_coding" "Cre11.g467660","No alias","Chlamydomonas reinhardtii","exostosin family protein","protein_coding" "Cre11.g467726","No alias","Chlamydomonas reinhardtii","lipid transporters","protein_coding" "Cre12.g486850","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre12.g491000","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre12.g515900","No alias","Chlamydomonas reinhardtii","transcription coactivators","protein_coding" "Cre12.g521200","No alias","Chlamydomonas reinhardtii","replication factor C1","protein_coding" "Cre12.g521800","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre12.g534151","No alias","Chlamydomonas reinhardtii","endonuclease/exonuclease/phosphatase family protein","protein_coding" "Cre12.g541350","No alias","Chlamydomonas reinhardtii","Ypt/Rab-GAP domain of gyp1p superfamily protein","protein_coding" "Cre12.g546700","No alias","Chlamydomonas reinhardtii","EMBRYO DEFECTIVE 140","protein_coding" "Cre12.g551550","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre12.g553100","No alias","Chlamydomonas reinhardtii","varicose-related","protein_coding" "Cre12.g554850","No alias","Chlamydomonas reinhardtii","thioredoxin H-type 1","protein_coding" "Cre12.g555600","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre12.g556650","No alias","Chlamydomonas reinhardtii","Transducin/WD40 repeat-like superfamily protein","protein_coding" "Cre12.g556911","No alias","Chlamydomonas reinhardtii","DNA repair and meiosis protein (Mre11)","protein_coding" "Cre12.g558250","No alias","Chlamydomonas reinhardtii","transducin family protein / WD-40 repeat family protein","protein_coding" "Cre13.g563650","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre13.g573750","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre13.g576250","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre13.g578501","No alias","Chlamydomonas reinhardtii","RING/FYVE/PHD zinc finger superfamily protein","protein_coding" "Cre13.g580650","No alias","Chlamydomonas reinhardtii","phosphotyrosyl phosphatase activator (PTPA) family protein","protein_coding" "Cre13.g583100","No alias","Chlamydomonas reinhardtii","KDO transferase A","protein_coding" "Cre13.g588600","No alias","Chlamydomonas reinhardtii","armadillo repeat kinesin 3","protein_coding" "Cre13.g592200","No alias","Chlamydomonas reinhardtii","NADH-dependent glutamate synthase 1","protein_coding" "Cre13.g607500","No alias","Chlamydomonas reinhardtii","KU70 homolog","protein_coding" "Cre14.g609150","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre14.g612000","No alias","Chlamydomonas reinhardtii","Protein kinase family protein with ARM repeat domain","protein_coding" "Cre14.g625150","No alias","Chlamydomonas reinhardtii","Phosphoglycerate mutase family protein","protein_coding" "Cre14.g633901","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre16.g652350","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre16.g653200","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre16.g660350","No alias","Chlamydomonas reinhardtii","zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides","protein_coding" "Cre16.g669700","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre16.g670261","No alias","Chlamydomonas reinhardtii","ARM repeat superfamily protein","protein_coding" "Cre16.g670550","No alias","Chlamydomonas reinhardtii","5\'-3\' exonuclease family protein","protein_coding" "Cre16.g672450","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre16.g681578","No alias","Chlamydomonas reinhardtii","anaphase-promoting complex subunit 8","protein_coding" "Cre16.g682950","No alias","Chlamydomonas reinhardtii","cell cycle checkpoint control protein family","protein_coding" "Cre16.g683450","No alias","Chlamydomonas reinhardtii","ADP glucose pyrophosphorylase large subunit 1","protein_coding" "Cre16.g687500","No alias","Chlamydomonas reinhardtii","actin related protein 2","protein_coding" "Cre16.g695350","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre17.g716251","No alias","Chlamydomonas reinhardtii","small ubiquitin-like modifier 2","protein_coding" "Cre17.g738550","No alias","Chlamydomonas reinhardtii","Function unknown","protein_coding" "Cre17.g741200","No alias","Chlamydomonas reinhardtii","microtubule end binding protein EB1A","protein_coding" "Cre17.g746247","No alias","Chlamydomonas reinhardtii","SET domain-containing protein","protein_coding" "Cre17.g747197","No alias","Chlamydomonas reinhardtii","Arp2/3 complex, 34 kD subunit p34-Arc","protein_coding" "evm.model.contig_2008.3","No alias","Porphyridium purpureum","(at2g20830 : 86.7) transferases;folic acid binding; FUNCTIONS IN: folic acid binding, transferase activity; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Formiminotransferase, N-terminal subdomain (InterPro:IPR012886), Formiminotransferas, N- and C-terminal subdomains (InterPro:IPR022384). & (reliability: 173.4) & (original description: no original description)","protein_coding" "evm.model.contig_2015.8","No alias","Porphyridium purpureum","(at4g38890 : 95.9) FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity, zinc ion binding, nucleic acid binding; INVOLVED IN: oxidation reduction, tRNA processing, metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269), tRNA-dihydrouridine synthase, conserved site (InterPro:IPR018517); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G49640.1); Has 11364 Blast hits to 11268 proteins in 2588 species: Archae - 15; Bacteria - 7817; Metazoa - 496; Fungi - 531; Plants - 173; Viruses - 0; Other Eukaryotes - 2332 (source: NCBI BLink). & (reliability: 191.8) & (original description: no original description)","protein_coding" "evm.model.contig_2016.10","No alias","Porphyridium purpureum","(at5g10480 : 122.0) Protein tyrosine phosphatase-like involved in cell division and differentiation. Interacts with CDKA;1 only in its phosphorylated form, preventing dephosphorylation. Overexpression slowed down cell division in suspension cell cultures at the G2-to-M transition and early mitosis and inhibited Arabidopsis seedling growth. Localized in the cytoplasm of dividing cells but moved into the nucleus upon cell differentiation. Based on complementation of yeast mutant PAS2 has acyl-CoA dehydratase activity. It interacts with CER10, a component of the microsomal fatty acid elongase complex, suggesting a role in synthesis of VLCFAs (very long chain fatty acids).; PASTICCINO 2 (PAS2); CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase-like, PTPLA (InterPro:IPR007482); BEST Arabidopsis thaliana protein match is: Protein-tyrosine phosphatase-like, PTPLA (TAIR:AT5G59770.1). & (reliability: 244.0) & (original description: no original description)","protein_coding" "evm.model.contig_2017.10","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2017.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2020.16","No alias","Porphyridium purpureum","(at3g24090 : 580.0) glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases; FUNCTIONS IN: sugar binding, transaminase activity, glutamine-fructose-6-phosphate transaminase (isomerizing) activity; INVOLVED IN: carbohydrate biosynthetic process, carbohydrate metabolic process, metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine amidotransferase, class-II (InterPro:IPR000583), Sugar isomerase (SIS) (InterPro:IPR001347), Glucosamine-fructose-6-phosphate aminotransferase, isomerising (InterPro:IPR005855), Glutamine amidotransferase, type II (InterPro:IPR017932); Has 19000 Blast hits to 18984 proteins in 2800 species: Archae - 500; Bacteria - 10467; Metazoa - 411; Fungi - 223; Plants - 106; Viruses - 14; Other Eukaryotes - 7279 (source: NCBI BLink). & (reliability: 1160.0) & (original description: no original description)","protein_coding" "evm.model.contig_2020.24","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2020.31","No alias","Porphyridium purpureum","(at4g39150 : 126.0) DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G21510.1). & (reliability: 252.0) & (original description: no original description)","protein_coding" "evm.model.contig_2020.32","No alias","Porphyridium purpureum","(at5g63770 : 145.0) a member of the diacylglycerol kinase gene family. Encodes a functional diacylglycerol kinase. Involved in root elongation and plant development. Gene expression is induced by wounding or cold.; diacylglycerol kinase 2 (DGK2); CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Diacylglycerol kinase, catalytic domain (InterPro:IPR001206), Diacylglycerol kinase, accessory domain (InterPro:IPR000756); BEST Arabidopsis thaliana protein match is: diacylglycerol kinase1 (TAIR:AT5G07920.1); Has 2044 Blast hits to 1731 proteins in 371 species: Archae - 0; Bacteria - 465; Metazoa - 1092; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink). & (reliability: 290.0) & (original description: no original description)","protein_coding" "evm.model.contig_2020.35","No alias","Porphyridium purpureum","(at1g21700 : 154.0) a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A, the other two members of the SWI3 family. Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Referred to as CHB3 in Zhou et al (2003).; SWITCH/sucrose nonfermenting 3C (SWI3C); FUNCTIONS IN: DNA binding; INVOLVED IN: chromatin remodeling; LOCATED IN: SWI/SNF complex, chromatin remodeling complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: DNA-binding family protein (TAIR:AT4G34430.3); Has 4703 Blast hits to 3623 proteins in 273 species: Archae - 0; Bacteria - 43; Metazoa - 1892; Fungi - 779; Plants - 380; Viruses - 2; Other Eukaryotes - 1607 (source: NCBI BLink). & (reliability: 308.0) & (original description: no original description)","protein_coding" "evm.model.contig_2020.37","No alias","Porphyridium purpureum","(at2g17520 : 254.0) Encodes a endoribonuclease/protein kinase IRE1-like protein that is predicted to form a type I transmembrane protein structure and contain kinase/endoribonuclease domains at their C-terminal halves. The transcript levels for several ER-stress responsive genes, including six protein disulfide isomerases (PDIs), BiP2, and AtbZIP60 are not affected in ire1-2 null mutants.; IRE1A; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), KEN domain, ribonuclease activator (InterPro:IPR010513), PUG domain (InterPro:IPR006567), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: inositol requiring 1-1 (TAIR:AT5G24360.1); Has 104790 Blast hits to 103944 proteins in 4127 species: Archae - 110; Bacteria - 12550; Metazoa - 37627; Fungi - 10369; Plants - 27162; Viruses - 328; Other Eukaryotes - 16644 (source: NCBI BLink). & (reliability: 508.0) & (original description: no original description)","protein_coding" "evm.model.contig_2025.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2025.30","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2033.23","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2044.29","No alias","Porphyridium purpureum","(at1g14620 : 109.0) DECOY (DECOY); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L46 (InterPro:IPR021757); Has 231 Blast hits to 231 proteins in 117 species: Archae - 0; Bacteria - 2; Metazoa - 68; Fungi - 103; Plants - 44; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 218.0) & (original description: no original description)","protein_coding" "evm.model.contig_2048.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2048.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2051.5","No alias","Porphyridium purpureum","(at3g08950 : 194.0) Encodes HCC1, homologue of the copper chaperone SCO1 (synthesis of cytochrome c oxidase 1) from the yeast Saccharomyces cerevisiae. SCO1 encodes a mitochondrial protein that is essential for the correct assembly of complex IV in the respiratory chain. HCC1 is localized in the mitochondrion. A chimeric yeast Sco1-Arabidopsis HCC1 protein complements yeast Sco1 activity. Embryos of hcc1 mutants became arrested at various developmental stages, mostly at the heart stage.; electron transport SCO1/SenC family protein; FUNCTIONS IN: copper ion binding; INVOLVED IN: copper ion transport, respiratory chain complex IV assembly, cellular copper ion homeostasis, cell redox homeostasis; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Synthesis of cytochrome c oxidase, Sco1/Sco2 (InterPro:IPR017276), Copper chaperone SCO1/SenC (InterPro:IPR003782), Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT4G39740.1); Has 4072 Blast hits to 4072 proteins in 1098 species: Archae - 11; Bacteria - 2439; Metazoa - 165; Fungi - 147; Plants - 84; Viruses - 0; Other Eukaryotes - 1226 (source: NCBI BLink). & (reliability: 388.0) & (original description: no original description)","protein_coding" "evm.model.contig_2053.7","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2054.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2059.11","No alias","Porphyridium purpureum","(at2g35720 : 153.0) Encodes OWL1, a J-domain protein involved in perception of very low light fluences.; ORIENTATION UNDER VERY LOW FLUENCES OF LIGHT 1 (OWL1); FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding, vegetative to reproductive phase transition of meristem, response to very low light intensity stimulus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT3G47940.1); Has 23021 Blast hits to 22960 proteins in 3212 species: Archae - 168; Bacteria - 9682; Metazoa - 3958; Fungi - 2136; Plants - 2202; Viruses - 13; Other Eukaryotes - 4862 (source: NCBI BLink). & (reliability: 306.0) & (original description: no original description)","protein_coding" "evm.model.contig_2059.16","No alias","Porphyridium purpureum","(at4g31170 : 90.1) Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-like, ATMRK (InterPro:IPR015783), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G24360.1). & (reliability: 180.2) & (original description: no original description)","protein_coding" "evm.model.contig_2062.25","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2062.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2073.11","No alias","Porphyridium purpureum","(at1g48310 : 229.0) chromatin remodeling factor18 (CHR18); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (TAIR:AT5G07810.1); Has 16435 Blast hits to 14312 proteins in 1741 species: Archae - 101; Bacteria - 4551; Metazoa - 3441; Fungi - 3785; Plants - 1315; Viruses - 143; Other Eukaryotes - 3099 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 101.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 458.0) & (original description: no original description)","protein_coding" "evm.model.contig_2077.7","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2086.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2090.11","No alias","Porphyridium purpureum","(at2g25110 : 106.0) Encodes an endoplasmic reticulum protein SDF2 (stromal-derived factor-2). Forms a complex SDF2-ERdj3B-BiP that is required for the proper accumulation of the surface-exposed leucine-rich repeat receptor kinases EFR. EFR is involved in PAMP (pathogen associated molecular patterns) triggered immunity.; stromal cell-derived factor 2-like protein precursor (SDF2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to bacterium, defense response to fungus, PAMP-induced immunity; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MIR (InterPro:IPR003608), MIR motif (InterPro:IPR016093); Has 1035 Blast hits to 992 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 386; Fungi - 512; Plants - 64; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink). & (reliability: 212.0) & (original description: no original description)","protein_coding" "evm.model.contig_2090.25","No alias","Porphyridium purpureum","(at4g23430 : 151.0) NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: chloroplast, chloroplast inner membrane; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G23420.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q39617|por_chlre : 85.5) Protochlorophyllide reductase, chloroplast precursor (EC 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) - Chlamydomonas reinhardtii & (reliability: 302.0) & (original description: no original description)","protein_coding" "evm.model.contig_2090.34","No alias","Porphyridium purpureum","(q58fk4|ard2_orysa : 213.0) 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 (EC 1.13.-.-) (Aci-reductone dioxygenase 2) (Submergence-induced protein 2A) - Oryza sativa (Rice) & (at5g43850 : 209.0) ARD4; FUNCTIONS IN: acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding; INVOLVED IN: L-methionine salvage from methylthioadenosine, oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Acireductone dioxygenase, ARD (InterPro:IPR004313), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT4G14710.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 416.0) & (original description: no original description)","protein_coding" "evm.model.contig_2096.17","No alias","Porphyridium purpureum","(at2g42160 : 83.2) BRAP2 RING ZnF UBP domain-containing protein 1 (BRIZ1); FUNCTIONS IN: catalytic activity, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCA1-associated 2 (InterPro:IPR011422), Zinc finger, UBP-type (InterPro:IPR001607), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G26000.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 166.4) & (original description: no original description)","protein_coding" "evm.model.contig_2098.14","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2112.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2114.17","No alias","Porphyridium purpureum","(at3g62840 : 114.0) Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G47640.3); Has 794 Blast hits to 794 proteins in 230 species: Archae - 2; Bacteria - 0; Metazoa - 329; Fungi - 181; Plants - 143; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink). & (reliability: 228.0) & (original description: no original description)","protein_coding" "evm.model.contig_2116.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2131.2","No alias","Porphyridium purpureum","(q651u1|cryd_orysa : 149.0) Cryptochrome DASH, chloroplast/mitochondrial precursor - Oryza sativa (Rice) & (at5g24850 : 139.0) Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome.; cryptochrome 3 (CRY3); FUNCTIONS IN: FMN binding, DNA binding, DNA photolyase activity; INVOLVED IN: DNA repair; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), Cryptochrome, DASH (InterPro:IPR014133), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), Cryptochrome/DNA photolyase, class 1 (InterPro:IPR002081); BEST Arabidopsis thaliana protein match is: photolyase/blue-light receptor 2 (TAIR:AT2G47590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 278.0) & (original description: no original description)","protein_coding" "evm.model.contig_2139.1","No alias","Porphyridium purpureum","(at3g08720 : 201.0) Encodes a ribosomal-protein S6 kinase. Gene expression is induced by cold and salt (NaCl). Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Phosphorylates specifically mammalian and plant S6 at 25 degrees C but not at 37 degrees C. Involved in translational up-regulation of ribosomal proteins.; Arabidopsis thaliana protein kinase 19 (ATPK19); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), AGC-kinase, C-terminal (InterPro:IPR000961), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, C-terminal (InterPro:IPR017892), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: protein-serine kinase 1 (TAIR:AT3G08730.1); Has 133901 Blast hits to 131707 proteins in 4554 species: Archae - 204; Bacteria - 15943; Metazoa - 48718; Fungi - 13429; Plants - 32816; Viruses - 561; Other Eukaryotes - 22230 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 120.0) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 402.0) & (original description: no original description)","protein_coding" "evm.model.contig_2139.16","No alias","Porphyridium purpureum","(at4g02460 : 155.0) Encodes a protein similar to PMS1 in yeast, a member of the family of eukaryotic MutL homologs. The protein appears to play a role in DNA mismatch repair and in the suppression of somatic homeologous recombination.; POSTMEIOTIC SEGREGATION 1 (PMS1); FUNCTIONS IN: mismatched DNA binding, ATP binding; INVOLVED IN: mismatch repair, fruit development, seed development, DNA recombination, pollen development; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair, conserved site (InterPro:IPR014762), ATPase-like, ATP-binding domain (InterPro:IPR003594), DNA mismatch repair protein, C-terminal (InterPro:IPR013507), MutL, C-terminal, dimerisation (InterPro:IPR014790), DNA mismatch repair protein, N-terminal (InterPro:IPR014763), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), DNA mismatch repair protein (InterPro:IPR002099), Post Meiotic Segregation 2 (InterPro:IPR015434), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721); BEST Arabidopsis thaliana protein match is: MUTL-homologue 1 (TAIR:AT4G09140.1); Has 10471 Blast hits to 7086 proteins in 2377 species: Archae - 138; Bacteria - 7516; Metazoa - 568; Fungi - 666; Plants - 148; Viruses - 0; Other Eukaryotes - 1435 (source: NCBI BLink). & (reliability: 310.0) & (original description: no original description)","protein_coding" "evm.model.contig_2139.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2139.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2143.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2146.12","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2157.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2157.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2172.5","No alias","Porphyridium purpureum","(at5g21326 : 103.0) Ca2+regulated serine-threonine protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 3 (TAIR:AT2G26980.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 97.4) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 198.0) & (original description: no original description)","protein_coding" "evm.model.contig_2173.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2186.8","No alias","Porphyridium purpureum","(q39817|calx_soybn : 217.0) Calnexin homolog precursor - Glycine max (Soybean) & (at5g07340 : 213.0) Calreticulin family protein; FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: protein folding; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); BEST Arabidopsis thaliana protein match is: calnexin 1 (TAIR:AT5G61790.1). & (reliability: 426.0) & (original description: no original description)","protein_coding" "evm.model.contig_2186.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2194.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2194.8","No alias","Porphyridium purpureum","(at2g31170 : 261.0) SYCO ARATH; FUNCTIONS IN: cysteine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: cysteinyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cysteinyl-tRNA synthetase, class Ia (InterPro:IPR002308), Cysteinyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015803), Cysteinyl-tRNA synthetase, class Ia, DALR (InterPro:IPR015273), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Cysteinyl-tRNA synthetase, class Ia, C-terminal (InterPro:IPR015804); BEST Arabidopsis thaliana protein match is: Cysteinyl-tRNA synthetase, class Ia family protein (TAIR:AT5G38830.1); Has 10676 Blast hits to 10676 proteins in 2860 species: Archae - 252; Bacteria - 6117; Metazoa - 332; Fungi - 154; Plants - 139; Viruses - 3; Other Eukaryotes - 3679 (source: NCBI BLink). & (reliability: 522.0) & (original description: no original description)","protein_coding" "evm.model.contig_2279.13","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2284.14","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2284.16","No alias","Porphyridium purpureum","(at1g59760 : 812.0) RNA helicase, ATP-dependent, SK12/DOB1 protein; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DSH, C-terminal (InterPro:IPR012961), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), RNA helicase, ATP-dependent, SK12/DOB1 (InterPro:IPR016438), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase, ATP-dependent, SK12/DOB1 protein (TAIR:AT2G06990.1); Has 9909 Blast hits to 8438 proteins in 1290 species: Archae - 828; Bacteria - 3072; Metazoa - 1170; Fungi - 1231; Plants - 476; Viruses - 32; Other Eukaryotes - 3100 (source: NCBI BLink). & (reliability: 1624.0) & (original description: no original description)","protein_coding" "evm.model.contig_2288.9","No alias","Porphyridium purpureum","(at3g22320 : 197.0) Non-catalytic subunit common to DNA-dependent RNA polymerases I, II, III and IV; homologous to budding yeast RPB5.; NRPB5; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381), RNA polymerase, subunit H/Rpb5, conserved site (InterPro:IPR020608); BEST Arabidopsis thaliana protein match is: RNA polymerase II fifth largest subunit, C (TAIR:AT5G57980.1); Has 1046 Blast hits to 1046 proteins in 368 species: Archae - 260; Bacteria - 0; Metazoa - 162; Fungi - 216; Plants - 118; Viruses - 20; Other Eukaryotes - 270 (source: NCBI BLink). & (reliability: 394.0) & (original description: no original description)","protein_coding" "evm.model.contig_2298.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2299.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2341.1","No alias","Porphyridium purpureum","(at1g75660 : 358.0) Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products.; 5'-3' exoribonuclease 3 (XRN3); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: exoribonuclease 2 (TAIR:AT5G42540.1); Has 4264 Blast hits to 3505 proteins in 442 species: Archae - 2; Bacteria - 295; Metazoa - 1361; Fungi - 725; Plants - 751; Viruses - 31; Other Eukaryotes - 1099 (source: NCBI BLink). & (reliability: 716.0) & (original description: no original description)","protein_coding" "evm.model.contig_2343.2","No alias","Porphyridium purpureum","(at2g04620 : 80.5) Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity, efflux transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G38380.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 161.0) & (original description: no original description)","protein_coding" "evm.model.contig_2357.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2493.6","No alias","Porphyridium purpureum","(at2g22250 : 89.4) Encodes a prokaryotic-type plastidic aspartate aminotransferase with glutamate/aspartate-prephenate aminotransferase (PAT) activity.; aspartate aminotransferase (AAT); FUNCTIONS IN: L-aspartate:2-oxoglutarate aminotransferase activity, transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, catalytic activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT1G77670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 178.8) & (original description: no original description)","protein_coding" "evm.model.contig_2494.36","No alias","Porphyridium purpureum","(at5g06680 : 153.0) Encodes protein similar to yeast SCP98. Yeast SCP98 is essential for the microtubule nucleation activity of the gamma-tubulin ring complexes.; spindle pole body component 98 (SPC98); CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259), Gamma tubulin complex protein 3 (InterPro:IPR015697); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT5G17410.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 306.0) & (original description: no original description)","protein_coding" "evm.model.contig_2502.14","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2502.8","No alias","Porphyridium purpureum","(at2g39340 : 101.0) SAC3/GANP/Nin1/mts3/eIF-3 p25 family; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 202.0) & (original description: no original description)","protein_coding" "evm.model.contig_2504.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_2504.6","No alias","Porphyridium purpureum","(at1g61010 : 542.0) cleavage and polyadenylation specificity factor 73-I (CPSF73-I); CONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712), RNA-metabolising metallo-beta-lactamase (InterPro:IPR011108), Beta-lactamase-like (InterPro:IPR001279), Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term (InterPro:IPR021718); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q652p4|cpsf2_orysa : 116.0) Cleavage and polyadenylation specificity factor 100 kDa subunit (CPSF 100 kDa subunit) - Oryza sativa (Rice) & (reliability: 1084.0) & (original description: no original description)","protein_coding" "evm.model.contig_3397.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3405.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3414.2","No alias","Porphyridium purpureum","(at3g03300 : 120.0) Encodes a Dicer-like protein that functions in the antiviral silencing response in turnip-crinkle virus-infected plants but not in TMV or CMV-strain-Y-infected plants. Involved in the production of ta-siRNAs. Partially antagonizes the production of miRNAs by DCL1. Substitutes for DCL4 to produce viral siRNA when DCL4 is missing or inhibited. Able to produce siRNAs but not miRNAs.; dicer-like 2 (DCL2); FUNCTIONS IN: in 7 functions; INVOLVED IN: defense response to virus, maintenance of DNA methylation, production of ta-siRNAs involved in RNA interference; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Double-stranded RNA-binding (InterPro:IPR001159), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Ribonuclease III (InterPro:IPR000999), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Dicer double-stranded RNA-binding fold (InterPro:IPR005034), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: dicer-like 4 (TAIR:AT5G20320.1). & (reliability: 240.0) & (original description: no original description)","protein_coding" "evm.model.contig_3416.13","No alias","Porphyridium purpureum","(at5g03430 : 187.0) phosphoadenosine phosphosulfate (PAPS) reductase family protein; FUNCTIONS IN: transferase activity; INVOLVED IN: Mo-molybdopterin cofactor biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Phosphoadenosine phosphosulphate reductase (InterPro:IPR002500), Molybdopterin binding (InterPro:IPR001453); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 374.0) & (original description: no original description)","protein_coding" "evm.model.contig_3416.3","No alias","Porphyridium purpureum","(at5g20410 : 257.0) Encodes a type B monogalactosyldiacylglycerol (MGDG) synthase. Strongly induced by phosphate deprivation, and in non-photosynthetic tissues. Does not contribute to galactolipid synthesis under Pi-sufficient conditions but does under Pi starvation.; monogalactosyldiacylglycerol synthase 2 (MGD2); CONTAINS InterPro DOMAIN/s: Monogalactosyldiacylglycerol synthase (InterPro:IPR009695), Glycosyl transferase, family 28, C-terminal (InterPro:IPR007235); BEST Arabidopsis thaliana protein match is: monogalactosyldiacylglycerol synthase type C (TAIR:AT2G11810.1); Has 1572 Blast hits to 1572 proteins in 585 species: Archae - 0; Bacteria - 1385; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). & (reliability: 514.0) & (original description: no original description)","protein_coding" "evm.model.contig_3416.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3422.7","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3423.6","No alias","Porphyridium purpureum","(at5g20250 : 217.0) encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.; DARK INDUCIBLE 10 (DIN10); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Raffinose synthase (InterPro:IPR008811); BEST Arabidopsis thaliana protein match is: seed imbibition 2 (TAIR:AT3G57520.1). & (q93xk2|stsyn_pea : 122.0) Stachyose synthase precursor (EC 2.4.1.67) (Galactinol--raffinose galactosyltransferase) - Pisum sativum (Garden pea) & (reliability: 434.0) & (original description: no original description)","protein_coding" "evm.model.contig_3425.10","No alias","Porphyridium purpureum","(at4g17020 : 191.0) transcription factor-related; FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: DNA repair, regulation of transcription, DNA-dependent; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor Tfb2 (InterPro:IPR004598). & (reliability: 382.0) & (original description: no original description)","protein_coding" "evm.model.contig_3425.14","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3440.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3446.11","No alias","Porphyridium purpureum","(at4g12740 : 256.0) HhH-GPD base excision DNA repair family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: DNA repair, base-excision repair; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), DNA glycosylase (InterPro:IPR011257), NUDIX hydrolase domain (InterPro:IPR000086), HhH-GPD domain (InterPro:IPR003265); Has 55833 Blast hits to 29061 proteins in 2861 species: Archae - 372; Bacteria - 10631; Metazoa - 17750; Fungi - 4523; Plants - 1695; Viruses - 834; Other Eukaryotes - 20028 (source: NCBI BLink). & (reliability: 512.0) & (original description: no original description)","protein_coding" "evm.model.contig_3450.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3450.14","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3450.15","No alias","Porphyridium purpureum","(at1g66730 : 353.0) Encodes a novel plant specific DNA ligase that is involved in seed germination and DNA repair.; DNA LIGASE 6 (LIG6); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, seed germination, DNA recombination, DNA replication; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), DNA repair metallo-beta-lactamase (InterPro:IPR011084), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059); BEST Arabidopsis thaliana protein match is: DNA ligase 1 (TAIR:AT1G08130.1); Has 4468 Blast hits to 4373 proteins in 907 species: Archae - 366; Bacteria - 1648; Metazoa - 644; Fungi - 681; Plants - 268; Viruses - 157; Other Eukaryotes - 704 (source: NCBI BLink). & (q7x7e9|dnl4_orysa : 90.5) Putative DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (Polydeoxyribonucleotide synthase [ATP] 4) - Oryza sativa (Rice) & (reliability: 706.0) & (original description: no original description)","protein_coding" "evm.model.contig_3456.7","No alias","Porphyridium purpureum","(at2g34560 : 94.7) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q96372|cdc48_capan : 85.9) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 171.8) & (original description: no original description)","protein_coding" "evm.model.contig_3486.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3487.6","No alias","Porphyridium purpureum","(at2g04845 : 128.0) Acyl-CoA N-acyltransferases (NAT) superfamily protein; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 393 Blast hits to 383 proteins in 188 species: Archae - 0; Bacteria - 98; Metazoa - 122; Fungi - 80; Plants - 36; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). & (reliability: 256.0) & (original description: no original description)","protein_coding" "evm.model.contig_3490.10","No alias","Porphyridium purpureum","(at5g64380 : 306.0) Inositol monophosphatase family protein; FUNCTIONS IN: phosphoric ester hydrolase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fructose-1,6-bisphosphatase (InterPro:IPR000146); BEST Arabidopsis thaliana protein match is: high cyclic electron flow 1 (TAIR:AT3G54050.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p46275|f16p1_pea : 248.0) Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) - Pisum sativum (Garden pea) & (reliability: 612.0) & (original description: no original description)","protein_coding" "evm.model.contig_3532.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3545.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3560.7","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3562.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3571.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3576.1","No alias","Porphyridium purpureum","(at5g55310 : 481.0) Encodes one of two Arabidopsis type-I DNA topoisomerase I genes. Reducing the level of expression of this gene in a top1alpha (At5g55300) mutant background causes seedling lethality.; DNA topoisomerase 1 beta (TOP1BETA); FUNCTIONS IN: DNA topoisomerase type I activity; INVOLVED IN: DNA topological change; LOCATED IN: membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, DNA binding, mixed alpha/beta motif, eukaryotic-type (InterPro:IPR013030), DNA topoisomerase I, DNA binding, eukaryotic-type (InterPro:IPR008336), DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010); BEST Arabidopsis thaliana protein match is: DNA topoisomerase I alpha (TAIR:AT5G55300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p93119|top1_dauca : 401.0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) - Daucus carota (Carrot) & (reliability: 962.0) & (original description: no original description)","protein_coding" "evm.model.contig_3581.2","No alias","Porphyridium purpureum","(at2g03270 : 330.0) DNA-binding protein, putative; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DNA helicase, putative (InterPro:IPR004483), DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G35970.1); Has 6736 Blast hits to 5857 proteins in 1106 species: Archae - 209; Bacteria - 2506; Metazoa - 1275; Fungi - 1034; Plants - 659; Viruses - 7; Other Eukaryotes - 1046 (source: NCBI BLink). & (reliability: 660.0) & (original description: no original description)","protein_coding" "evm.model.contig_3587.13","No alias","Porphyridium purpureum","(at1g80070 : 3076.0) a genetic locus involved in embryogenesis. Mutations in this locus result in an abnormal suspensor and embryo lethality.; ABNORMAL SUSPENSOR 2 (SUS2); INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555), Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding (InterPro:IPR019581), Pre-mRNA-processing-splicing factor 8 (InterPro:IPR012591), PROCN (InterPro:IPR012592), Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding (InterPro:IPR019580), PRP8 domain IV core (InterPro:IPR021983), PRO, C-terminal (InterPro:IPR012984), RNA recognition motif, spliceosomal PrP8 (InterPro:IPR019582); BEST Arabidopsis thaliana protein match is: Pre-mRNA-processing-splicing factor (TAIR:AT4G38780.1); Has 828 Blast hits to 729 proteins in 312 species: Archae - 0; Bacteria - 2; Metazoa - 333; Fungi - 220; Plants - 69; Viruses - 2; Other Eukaryotes - 202 (source: NCBI BLink). & (reliability: 6152.0) & (original description: no original description)","protein_coding" "evm.model.contig_3597.6","No alias","Porphyridium purpureum","(at5g41360 : 736.0) Encodes XPB2, a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies.; homolog of Xeroderma pigmentosum complementation group B 2 (XPB2); FUNCTIONS IN: in 7 functions; INVOLVED IN: response to UV-B, N-terminal protein myristoylation; EXPRESSED IN: whole plant; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001), Xeroderma pigmentosum group B protein (XP-B) (InterPro:IPR001161), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: homolog of xeroderma pigmentosum complementation group B 1 (TAIR:AT5G41370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1472.0) & (original description: no original description)","protein_coding" "evm.model.contig_3606.2","No alias","Porphyridium purpureum","(at2g38130 : 144.0) Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes.; ATMAK3; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT5G13780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 288.0) & (original description: no original description)","protein_coding" "evm.model.contig_3620.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_3727.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_431.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_434.2","No alias","Porphyridium purpureum","(at4g25720 : 164.0) This locus encodes a protein with similarity to gamma-glutamylcyclotransferase that may be involved in catalyzing the formation of pyroglutate residue on proteins that have been post-translationally processed to reveal a glutamine at their N-terminus. Enzymatic assays to test the function of this protein were performed using a truncated form of the protein lacking a signal peptide that is most similar to the AT4G25720.1 protein model.; glutaminyl cyclase (QC); FUNCTIONS IN: glutaminyl-peptide cyclotransferase activity, catalytic activity; INVOLVED IN: peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine cyclotransferase (InterPro:IPR007788), Nitrous oxide reductase, N-terminal (InterPro:IPR011045); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 328.0) & (original description: no original description)","protein_coding" "evm.model.contig_435.10","No alias","Porphyridium purpureum","(at3g07750 : 85.9) 3'-5'-exoribonuclease family protein; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: ribonuclease PH45A (TAIR:AT3G12990.3); Has 1494 Blast hits to 1492 proteins in 343 species: Archae - 295; Bacteria - 54; Metazoa - 354; Fungi - 315; Plants - 185; Viruses - 0; Other Eukaryotes - 291 (source: NCBI BLink). & (reliability: 171.8) & (original description: no original description)","protein_coding" "evm.model.contig_435.20","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_439.4","No alias","Porphyridium purpureum","(at3g57680 : 125.0) Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: chloroplast thylakoid lumen, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT4G17740.2); Has 8999 Blast hits to 8993 proteins in 1973 species: Archae - 1; Bacteria - 5400; Metazoa - 54; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 3392 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description)","protein_coding" "evm.model.contig_440.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4400.12","No alias","Porphyridium purpureum","(at5g40530 : 174.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Methyltransferase-related (InterPro:IPR007823); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 348.0) & (original description: no original description)","protein_coding" "evm.model.contig_4401.6","No alias","Porphyridium purpureum","(at1g18260 : 92.8) HCP-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G73570.1); Has 24350 Blast hits to 8436 proteins in 1359 species: Archae - 0; Bacteria - 17163; Metazoa - 848; Fungi - 960; Plants - 547; Viruses - 27; Other Eukaryotes - 4805 (source: NCBI BLink). & (reliability: 174.8) & (original description: no original description)","protein_coding" "evm.model.contig_4404.14","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4404.25","No alias","Porphyridium purpureum","(at5g63320 : 84.0) Encodes NPX1 (Nuclear Protein X1), a nuclear factor regulating abscisic acid responses.; nuclear protein X1 (NPX1); FUNCTIONS IN: protein binding, transcription repressor activity; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: bromodomain and extraterminal domain protein 9 (TAIR:AT5G14270.2); Has 5825 Blast hits to 4645 proteins in 254 species: Archae - 0; Bacteria - 2; Metazoa - 3479; Fungi - 996; Plants - 604; Viruses - 2; Other Eukaryotes - 742 (source: NCBI BLink). & (reliability: 168.0) & (original description: no original description)","protein_coding" "evm.model.contig_441.11","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4418.25","No alias","Porphyridium purpureum","(at4g39920 : 85.5) Microtubule-folding cofactor, produces assembly-competent alpha-/beta-tubulin heterodimers.; PORCINO (POR); FUNCTIONS IN: binding; INVOLVED IN: tubulin complex assembly, cytokinesis; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CARP motif (InterPro:IPR006599), C-CAP/cofactor C-like domain (InterPro:IPR017901), Tubulin binding cofactor C (InterPro:IPR012945); Has 497 Blast hits to 493 proteins in 165 species: Archae - 0; Bacteria - 11; Metazoa - 222; Fungi - 88; Plants - 54; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). & (reliability: 171.0) & (original description: no original description)","protein_coding" "evm.model.contig_4424.3","No alias","Porphyridium purpureum","(at5g42870 : 220.0) phosphatidic acid phosphohydrolase 2 (PAH2); FUNCTIONS IN: phosphatidate phosphatase activity; INVOLVED IN: cellular response to phosphate starvation, lipid metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LNS2, Lipin/Ned1/Smp2 (InterPro:IPR013209), Lipin, N-terminal conserved region (InterPro:IPR007651); BEST Arabidopsis thaliana protein match is: Lipin family protein (TAIR:AT3G09560.3). & (reliability: 440.0) & (original description: no original description)","protein_coding" "evm.model.contig_443.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_443.7","No alias","Porphyridium purpureum","(q85b65|rk2_antfo : 124.0) Chloroplast 50S ribosomal protein L2 - Anthoceros formosae (Hornwort) & (atcg01310 : 102.0) encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex; ribosomal protein L2 (RPL2.2); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: plastid large ribosomal subunit, membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation protein SH3-like, subgroup (InterPro:IPR014722), Ribosomal protein L2 (InterPro:IPR002171), Ribosomal protein L2, bacterial-type (InterPro:IPR005880), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal protein L2, C-terminal (InterPro:IPR022669), Ribosomal Proteins L2, RNA binding domain (InterPro:IPR022666), Ribosomal protein L2, conserved site (InterPro:IPR022671); BEST Arabidopsis thaliana protein match is: ribosomal protein L2 (TAIR:ATCG00830.1). & (reliability: 204.0) & (original description: no original description)","protein_coding" "evm.model.contig_4436.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4438.17","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_444.9","No alias","Porphyridium purpureum","(at3g26670 : 92.0) Protein of unknown function (DUF803); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF803 (InterPro:IPR008521); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF803) (TAIR:AT3G23870.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (gnl|cdd|68872 : 88.9) no description available & (reliability: 184.0) & (original description: no original description)","protein_coding" "evm.model.contig_4443.13","No alias","Porphyridium purpureum","(at5g19740 : 372.0) Peptidase M28 family protein; FUNCTIONS IN: dipeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Transferrin receptor-like, dimerisation (InterPro:IPR007365), Peptidase M28 (InterPro:IPR007484); BEST Arabidopsis thaliana protein match is: Peptidase M28 family protein (TAIR:AT3G54720.1); Has 3567 Blast hits to 3525 proteins in 555 species: Archae - 24; Bacteria - 1302; Metazoa - 657; Fungi - 527; Plants - 315; Viruses - 0; Other Eukaryotes - 742 (source: NCBI BLink). & (reliability: 744.0) & (original description: no original description)","protein_coding" "evm.model.contig_4443.7","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4448.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4451.4","No alias","Porphyridium purpureum","(at5g01720 : 82.4) RNI-like superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G27920.1); Has 15959 Blast hits to 6468 proteins in 357 species: Archae - 0; Bacteria - 920; Metazoa - 6194; Fungi - 1434; Plants - 4975; Viruses - 16; Other Eukaryotes - 2420 (source: NCBI BLink). & (reliability: 164.8) & (original description: no original description)","protein_coding" "evm.model.contig_4454.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4455.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4464.8","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_447.3","No alias","Porphyridium purpureum"," (original description: no original description)","protein_coding" "evm.model.contig_4476.14","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4476.3","No alias","Porphyridium purpureum","(at1g03750 : 287.0) switch 2 (SWI2); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1); Has 20033 Blast hits to 14398 proteins in 1655 species: Archae - 120; Bacteria - 5954; Metazoa - 4199; Fungi - 4321; Plants - 1927; Viruses - 177; Other Eukaryotes - 3335 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 132.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 574.0) & (original description: no original description)","protein_coding" "evm.model.contig_448.13","No alias","Porphyridium purpureum","(at1g79440 : 331.0) Encodes a mitochondrial succinic semialdehyde dehydrogenase (SSADH). Nomenclature according to Kirch, et al (2004).; aldehyde dehydrogenase 5F1 (ALDH5F1); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, NAD or NADH binding, copper ion binding, succinate-semialdehyde dehydrogenase activity; INVOLVED IN: in 6 processes; LOCATED IN: mitochondrion, chloroplast, mitochondrial matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160), Succinic semialdehyde dehydrogenase (InterPro:IPR010102); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 2B4 (TAIR:AT3G48000.1); Has 62487 Blast hits to 62143 proteins in 3037 species: Archae - 481; Bacteria - 36218; Metazoa - 2614; Fungi - 2131; Plants - 1502; Viruses - 0; Other Eukaryotes - 19541 (source: NCBI BLink). & (p17202|badh_spiol : 220.0) Betaine-aldehyde dehydrogenase, chloroplast precursor (EC 1.2.1.8) (BADH) - Spinacia oleracea (Spinach) & (reliability: 662.0) & (original description: no original description)","protein_coding" "evm.model.contig_4483.4","No alias","Porphyridium purpureum","(o82626|erg_antma : 130.0) GTP-binding protein ERG - Antirrhinum majus (Garden snapdragon) & (at1g30960 : 128.0) GTP-binding family protein; FUNCTIONS IN: RNA binding, GTP binding; LOCATED IN: cytosol; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, prokaryotic type (InterPro:IPR009019), K Homology, type 2 (InterPro:IPR004044), Small GTP-binding protein (InterPro:IPR005225), GTP-binding protein Era (InterPro:IPR005662), GTP-binding protein, HSR1-related (InterPro:IPR002917), K homology-like, alpha/beta (InterPro:IPR015946); BEST Arabidopsis thaliana protein match is: RNA binding;GTP binding (TAIR:AT5G66470.1); Has 21534 Blast hits to 19384 proteins in 2851 species: Archae - 72; Bacteria - 16256; Metazoa - 383; Fungi - 140; Plants - 214; Viruses - 0; Other Eukaryotes - 4469 (source: NCBI BLink). & (reliability: 256.0) & (original description: no original description)","protein_coding" "evm.model.contig_4491.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4500.3","No alias","Porphyridium purpureum","(at4g30860 : 123.0) Encodes a member of the trxG protein family. Contains a SET domain which is known to be involved in modification of histone tails by methylation. Interacts physically with AMS, but the implications of this interaction are unknown.Overexpression results in plieotrophic developmental defects.; SET domain group 4 (SDG4); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Post-SET domain (InterPro:IPR003616), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), AWS (InterPro:IPR006560); BEST Arabidopsis thaliana protein match is: histone-lysine N-methyltransferase ASHH3 (TAIR:AT2G44150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 246.0) & (original description: no original description)","protein_coding" "evm.model.contig_4515.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4522.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4543.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4584.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_4601.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_468.4","No alias","Porphyridium purpureum","(at5g40820 : 342.0) Encodes a Arabidopsis ortholog of the ATR protein kinase that is involved in a wide range of responses to DNA damage and plays a central role in cell-cycle regulation. Dominant loss of function alleles identified as suppressors of ALS also exhibit increased tolerance to aluminum. This may be due to the inhibition of terminal differentiation of the root apex upon exposure to Al.; Ataxia telangiectasia-mutated and RAD3-related (ATR); FUNCTIONS IN: protein serine/threonine kinase activity, inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: in 9 processes; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403), UME (InterPro:IPR012993), Protein kinase-like domain (InterPro:IPR011009), PIK-related kinase, FAT (InterPro:IPR003151), Armadillo-type fold (InterPro:IPR016024), PIK-related kinase (InterPro:IPR014009), Phosphatidylinositol 3/4-kinase, conserved site (InterPro:IPR018936), PIK-related kinase, FATC (InterPro:IPR003152); BEST Arabidopsis thaliana protein match is: ataxia-telangiectasia mutated (TAIR:AT3G48190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q5z987|atr_orysa : 288.0) Serine/threonine-protein kinase ATR (EC 2.7.11.1) - Oryza sativa (Rice) & (reliability: 684.0) & (original description: no original description)","protein_coding" "evm.model.contig_485.2","No alias","Porphyridium purpureum","(at4g21770 : 142.0) Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145); Has 5935 Blast hits to 5933 proteins in 1806 species: Archae - 0; Bacteria - 4596; Metazoa - 112; Fungi - 68; Plants - 78; Viruses - 0; Other Eukaryotes - 1081 (source: NCBI BLink). & (reliability: 284.0) & (original description: no original description)","protein_coding" "evm.model.contig_493.9","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_498.13","No alias","Porphyridium purpureum","(at2g45790 : 308.0) encodes a phosphomannomutase, involved in ascorbate biosynthesis; phosphomannomutase (PMM); FUNCTIONS IN: protein binding, phosphomannomutase activity; INVOLVED IN: L-ascorbic acid biosynthetic process, response to salt stress, mannose biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic phosphomannomutase (InterPro:IPR005002), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379); Has 1083 Blast hits to 1081 proteins in 282 species: Archae - 1; Bacteria - 92; Metazoa - 201; Fungi - 171; Plants - 223; Viruses - 0; Other Eukaryotes - 395 (source: NCBI BLink). & (reliability: 616.0) & (original description: no original description)","protein_coding" "evm.model.contig_499.4","No alias","Porphyridium purpureum","(at1g65540 : 290.0) LETM1-like protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), LETM1-like (InterPro:IPR011685); BEST Arabidopsis thaliana protein match is: LETM1-like protein (TAIR:AT3G59820.1); Has 7253 Blast hits to 6279 proteins in 764 species: Archae - 76; Bacteria - 1084; Metazoa - 3311; Fungi - 589; Plants - 471; Viruses - 24; Other Eukaryotes - 1698 (source: NCBI BLink). & (reliability: 580.0) & (original description: no original description)","protein_coding" "evm.model.contig_510.6","No alias","Porphyridium purpureum","(at1g31600 : 112.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G02485.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 224.0) & (original description: no original description)","protein_coding" "evm.model.contig_514.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_516.10","No alias","Porphyridium purpureum","(at1g80780 : 280.0) Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT2G32070.1). & (reliability: 560.0) & (original description: no original description)","protein_coding" "evm.model.contig_516.8","No alias","Porphyridium purpureum","(at2g47420 : 348.0) Ribosomal RNA adenine dimethylase family protein; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA (adenine) methyltransferase activity; INVOLVED IN: rRNA modification, rRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine dimethylase (InterPro:IPR011530), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2); Has 9871 Blast hits to 9860 proteins in 3038 species: Archae - 214; Bacteria - 6519; Metazoa - 271; Fungi - 146; Plants - 120; Viruses - 0; Other Eukaryotes - 2601 (source: NCBI BLink). & (reliability: 696.0) & (original description: no original description)","protein_coding" "evm.model.contig_517.6","No alias","Porphyridium purpureum","(at3g59630 : 96.7) diphthamide synthesis DPH2 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: peptidyl-diphthamide biosynthetic process from peptidyl-histidine; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Diphthamide synthesis, DPH1/DHP2 (InterPro:IPR002728), Diphthamide synthesis, DHP2 (InterPro:IPR010014); BEST Arabidopsis thaliana protein match is: diphthamide synthesis DPH2 family protein (TAIR:AT5G62030.1); Has 995 Blast hits to 948 proteins in 287 species: Archae - 127; Bacteria - 0; Metazoa - 243; Fungi - 308; Plants - 94; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink). & (reliability: 193.4) & (original description: no original description)","protein_coding" "evm.model.contig_531.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_532.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_541.3","No alias","Porphyridium purpureum","(at3g56190 : 184.0) Encodes one of two alpha-SNAPs (soluble NSF attachment protein) in Arabidopsis; alpha-soluble NSF attachment protein 2 (ALPHA-SNAP2); FUNCTIONS IN: soluble NSF attachment protein activity, binding; INVOLVED IN: intracellular protein transport; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: male gametophyte, cultured cell, pollen tube, leaf; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: NSF attachment protein (InterPro:IPR000744), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: alpha-soluble NSF attachment protein 1 (TAIR:AT3G56450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p93798|snaa_vitvi : 177.0) Alpha-soluble NSF attachment protein (Alpha-SNAP) (N-ethylmaleimide-sensitive factor attachment protein, alpha) - Vitis vinifera (Grape) & (reliability: 368.0) & (original description: no original description)","protein_coding" "evm.model.contig_544.5","No alias","Porphyridium purpureum","(at1g70590 : 87.8) F-box family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: HCP-like superfamily protein (TAIR:AT1G18260.1); Has 16059 Blast hits to 6577 proteins in 1289 species: Archae - 0; Bacteria - 11525; Metazoa - 502; Fungi - 723; Plants - 391; Viruses - 15; Other Eukaryotes - 2903 (source: NCBI BLink). & (reliability: 175.6) & (original description: no original description)","protein_coding" "evm.model.contig_544.7","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_544.8","No alias","Porphyridium purpureum","(at4g32060 : 106.0) calcium-binding EF hand family protein; FUNCTIONS IN: calcium ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); Has 1096 Blast hits to 1078 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 829; Fungi - 82; Plants - 97; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink). & (reliability: 212.0) & (original description: no original description)","protein_coding" "evm.model.contig_547.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_552.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_564.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_568.8","No alias","Porphyridium purpureum","(at1g31160 : 140.0) Encodes a member of the histidine triad nucleotide-binding family of proteins, but its activity has not been determined.; HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (HINT 2); FUNCTIONS IN: protein kinase C binding, zinc ion binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidine triad-like motif (InterPro:IPR011146), Histidine triad, conserved site (InterPro:IPR019808), Histidine triad (HIT) protein (InterPro:IPR001310), Histidine triad motif (InterPro:IPR011151); BEST Arabidopsis thaliana protein match is: HIS triad family protein 3 (TAIR:AT3G56490.1); Has 8225 Blast hits to 8223 proteins in 2654 species: Archae - 159; Bacteria - 5014; Metazoa - 405; Fungi - 167; Plants - 130; Viruses - 0; Other Eukaryotes - 2350 (source: NCBI BLink). & (p42856|zb14_maize : 129.0) 14 kDa zinc-binding protein (Protein kinase C inhibitor) (PKCI) - Zea mays (Maize) & (reliability: 280.0) & (original description: no original description)","protein_coding" "evm.model.contig_578.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_578.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_579.5","No alias","Porphyridium purpureum","(at3g13070 : 184.0) CBS domain-containing protein / transporter associated domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF21 (InterPro:IPR002550), Transporter-associated domain (InterPro:IPR005170), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS domain-containing protein / transporter associated domain-containing protein (TAIR:AT1G55930.1); Has 15808 Blast hits to 15803 proteins in 2590 species: Archae - 162; Bacteria - 11531; Metazoa - 244; Fungi - 136; Plants - 197; Viruses - 0; Other Eukaryotes - 3538 (source: NCBI BLink). & (reliability: 368.0) & (original description: no original description)","protein_coding" "evm.model.contig_589.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_600.3","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_618.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_623.5","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_625.1","No alias","Porphyridium purpureum","(at2g38770 : 95.1) EMBRYO DEFECTIVE 2765 (EMB2765); LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RNA helicase, putative (TAIR:AT5G47010.1); Has 4121 Blast hits to 3614 proteins in 689 species: Archae - 125; Bacteria - 655; Metazoa - 959; Fungi - 1056; Plants - 630; Viruses - 0; Other Eukaryotes - 696 (source: NCBI BLink). & (reliability: 190.2) & (original description: no original description)","protein_coding" "evm.model.contig_653.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_670.2","No alias","Porphyridium purpureum","(at5g53400 : 132.0) Encodes BOBBER1 (BOB1), a non-canonical small heat shock protein required for both development and thermotolerance. BOB1 is cytoplasmic at basal temperatures but forms heat shock granules containing canonical small heat shock proteins at high temperatures.; BOBBER1 (BOB1); CONTAINS InterPro DOMAIN/s: CS-like domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS domain (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT4G27890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 264.0) & (original description: no original description)","protein_coding" "evm.model.contig_674.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_677.1","No alias","Porphyridium purpureum","(at1g77300 : 82.4) Encodes a protein with histone lysine N-methyltransferase activity required specifically for the trimethylation of H3-K4 in FLC chromatin (and not in H3-K36 dimethylation). Acts as an inhibitor of flowering specifically involved in the autonomous promotion pathway. EFS also regulates the expression of genes involved in carotenoid biosynthesis.Modification of histone methylation at the CRTISO locus reduces transcript levels 90%. The increased shoot branching seen in some EFS mutants is likely due to the carotenoid biosynthesis defect having an effect on stringolactones.Required for ovule, embryo sac, anther and pollen development.; EARLY FLOWERING IN SHORT DAYS (EFS); FUNCTIONS IN: histone methyltransferase activity (H3-K4 specific); INVOLVED IN: in 10 processes; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Post-SET domain (InterPro:IPR003616), AWS (InterPro:IPR006560), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: SET domain group 26 (TAIR:AT1G76710.2); Has 6227 Blast hits to 6009 proteins in 532 species: Archae - 3; Bacteria - 662; Metazoa - 2557; Fungi - 556; Plants - 1120; Viruses - 3; Other Eukaryotes - 1326 (source: NCBI BLink). & (reliability: 164.8) & (original description: no original description)","protein_coding" "evm.model.contig_697.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_698.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_743.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.contig_786.2","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000203.20","No alias","Cyanophora paradoxa","(at3g25230 : 118.0) Encodes a a high molecular weight member of the FK506 binding protein (FKBP) family. It has three FKBP12-like domains, tetratricopeptide repeats, and a putative calmodulin binding domain. Modulates thermotolerance by interacting with HSP90.1 and affecting the accumulation of HsfA2-regulated sHSPs.; rotamase FKBP 1 (ROF1); CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-type peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT5G48570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q43207|fkb70_wheat : 116.0) 70 kDa peptidyl-prolyl isomerase (EC 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) - Triticum aestivum (Wheat) & (reliability: 236.0) & (original description: no original description)","protein_coding" "evm.model.tig00000241.40","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000350.39","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000402.20","No alias","Cyanophora paradoxa","(at1g16970 : 178.0) Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity.; KU70 homolog (KU70); FUNCTIONS IN: double-stranded DNA binding, protein binding; INVOLVED IN: DNA repair, response to heat, telomere maintenance; LOCATED IN: nucleus, DNA-dependent protein kinase-DNA ligase 4 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ku70/Ku80, N-terminal alpha/beta (InterPro:IPR005161), DNA-binding SAP (InterPro:IPR003034), DNA helicase, ATP-dependent, Ku type (InterPro:IPR006164), Spen Paralogue and Orthologue SPOC, C-terminal-like (InterPro:IPR016194), Ku70/Ku80 C-terminal arm (InterPro:IPR005160), DNA helicase, ATP-dependent, Ku70 subunit (InterPro:IPR006165); Has 475 Blast hits to 466 proteins in 181 species: Archae - 0; Bacteria - 6; Metazoa - 182; Fungi - 177; Plants - 52; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). & (reliability: 356.0) & (original description: no original description)","protein_coding" "evm.model.tig00000402.51","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000626.8","No alias","Cyanophora paradoxa","(p42347|pi3k1_soybn : 109.0) Phosphatidylinositol 3-kinase, root isoform (EC 2.7.1.137) (PI3-kinase) (PtdIns-3-kinase) (PI3K) (SPI3K-5) - Glycine max (Soybean) & (at1g60490 : 108.0) Encodes a phosphatidylinositol 3-kinase that is expressed in most plant tissues. Defects in VPS34 affect a number of cellular processes. Loss of function mutations are not transmitted through the male gametophyte due to defects in microgametogenesis therefore it is difficult to assess the effects of loss of VPS34 function in the whole plant. Involved in salt-stress responses.; vacuolar protein sorting 34 (VPS34); FUNCTIONS IN: 1-phosphatidylinositol-3-kinase activity, inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: oxygen and reactive oxygen species metabolic process, response to salt stress, endocytosis, N-terminal protein myristoylation, microgametogenesis; LOCATED IN: phosphoinositide 3-kinase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403), Phosphoinositide 3-kinase, accessory (PIK) domain (InterPro:IPR001263), Phosphoinositide 3-kinase, C2 (InterPro:IPR002420), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Protein kinase-like domain (InterPro:IPR011009), Phosphatidylinositol Kinase (InterPro:IPR015433), Phosphatidylinositol 3-kinase, Vps34 type (InterPro:IPR008290), Armadillo-type fold (InterPro:IPR016024), Phosphatidylinositol 3/4-kinase, conserved site (InterPro:IPR018936); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol 3- and 4-kinase family protein (TAIR:AT1G49340.1); Has 3550 Blast hits to 3392 proteins in 278 species: Archae - 0; Bacteria - 0; Metazoa - 1514; Fungi - 819; Plants - 335; Viruses - 4; Other Eukaryotes - 878 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description)","protein_coding" "evm.model.tig00000826.20","No alias","Cyanophora paradoxa","(at5g43530 : 117.0) Helicase protein with RING/U-box domain; FUNCTIONS IN: in 6 functions; LOCATED IN: chloroplast envelope; EXPRESSED IN: shoot apex, embryo, male gametophyte, flower, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description)","protein_coding" "evm.model.tig00000852.3","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00000912.24","No alias","Cyanophora paradoxa","(at5g12190 : 147.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G14870.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 294.0) & (original description: no original description)","protein_coding" "evm.model.tig00001095.17","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00001126.11","No alias","Cyanophora paradoxa","(at2g27600 : 156.0) Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function.; SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1 (SKD1); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: vesicle-mediated transport, endosome organization; LOCATED IN: cytoplasm, multivesicular body; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1); Has 30691 Blast hits to 28172 proteins in 3117 species: Archae - 1476; Bacteria - 10868; Metazoa - 5113; Fungi - 3519; Plants - 2854; Viruses - 27; Other Eukaryotes - 6834 (source: NCBI BLink). & (p54774|cdc48_soybn : 89.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 312.0) & (original description: no original description)","protein_coding" "evm.model.tig00001286.12","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020554.52","No alias","Cyanophora paradoxa","(at2g38730 : 98.6) Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1); Has 14613 Blast hits to 14579 proteins in 2550 species: Archae - 106; Bacteria - 5772; Metazoa - 2906; Fungi - 1375; Plants - 1228; Viruses - 4; Other Eukaryotes - 3222 (source: NCBI BLink). & (reliability: 197.2) & (original description: no original description)","protein_coding" "evm.model.tig00020610.65","No alias","Cyanophora paradoxa","(at2g43120 : 193.0) RmlC-like cupins superfamily protein; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: stem, flower; CONTAINS InterPro DOMAIN/s: Pirin, C-terminal (InterPro:IPR008778), Pirin (InterPro:IPR012093), Cupin, RmlC-type (InterPro:IPR011051), Pirin, N-terminal (InterPro:IPR003829); BEST Arabidopsis thaliana protein match is: pirin (TAIR:AT3G59220.1); Has 7357 Blast hits to 7357 proteins in 1454 species: Archae - 66; Bacteria - 4603; Metazoa - 71; Fungi - 219; Plants - 125; Viruses - 0; Other Eukaryotes - 2273 (source: NCBI BLink). & (reliability: 362.0) & (original description: no original description)","protein_coding" "evm.model.tig00020614.116","No alias","Cyanophora paradoxa","(at2g14170 : 542.0) Arabidopsis thaliana methylmalonate-semialdehyde dehydrogenase; aldehyde dehydrogenase 6B2 (ALDH6B2); CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160), Methylmalonate-semialdehyde dehydrogenase (InterPro:IPR010061); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 2C4 (TAIR:AT3G24503.1); Has 57527 Blast hits to 57240 proteins in 2927 species: Archae - 475; Bacteria - 33264; Metazoa - 2506; Fungi - 2072; Plants - 1211; Viruses - 0; Other Eukaryotes - 17999 (source: NCBI BLink). & (p17202|badh_spiol : 176.0) Betaine-aldehyde dehydrogenase, chloroplast precursor (EC 1.2.1.8) (BADH) - Spinacia oleracea (Spinach) & (reliability: 1084.0) & (original description: no original description)","protein_coding" "evm.model.tig00020629.40","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020684.27","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020684.30","No alias","Cyanophora paradoxa","(at3g04240 : 289.0) Has O-linked N-acetyl glucosamine transferase activity. Similar to Arabidopsis SPY gene.; secret agent (SEC); CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 114710 Blast hits to 35863 proteins in 2480 species: Archae - 3197; Bacteria - 54774; Metazoa - 16661; Fungi - 4580; Plants - 3873; Viruses - 0; Other Eukaryotes - 31625 (source: NCBI BLink). & (o82039|spy_pethy : 142.0) Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY (EC 2.4.1.-) (PhSPY) - Petunia hybrida (Petunia) & (reliability: 578.0) & (original description: no original description)","protein_coding" "evm.model.tig00020780.3","No alias","Cyanophora paradoxa","(at5g23140 : 250.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; nuclear-encoded CLP protease P7 (NCLPP7); FUNCTIONS IN: cobalt ion binding, zinc ion binding; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p56317|clpp_chlvu : 150.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 500.0) & (original description: no original description)","protein_coding" "evm.model.tig00020849.33","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00020909.11","No alias","Cyanophora paradoxa","(at4g17050 : 129.0) Encodes a protein with ureidoglycine aminohydrolase activity.; ureidoglycine aminohydrolase (UGLYAH); FUNCTIONS IN: ureidoglycine aminohydrolase activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: allantoin catabolic process, regulation of transcription; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cupin 2, conserved barrel (InterPro:IPR013096), Cupin, RmlC-type (InterPro:IPR011051), RmlC-like jelly roll fold (InterPro:IPR014710); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 258.0) & (original description: no original description)","protein_coding" "evm.model.tig00020944.4","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00021042.14","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00021374.13","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00021517.25","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00021537.11","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "evm.model.tig00021612.57","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding" "Glyma.01G102000","No alias","Glycine max","domains rearranged methylase 1","protein_coding" "Glyma.01G181102","No alias","Glycine max","Phototropic-responsive NPH3 family protein","protein_coding" "Glyma.01G210100","No alias","Glycine max","plant VAP homolog 12","protein_coding" "Glyma.01G219400","No alias","Glycine max","glutathione peroxidase 6","protein_coding" "Glyma.02G115600","No alias","Glycine max","QUASIMODO2 LIKE 1","protein_coding" "Glyma.02G198000","No alias","Glycine max","Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein","protein_coding" "Glyma.02G236300","No alias","Glycine max","extra-large G-protein 1","protein_coding" "Glyma.02G258700","No alias","Glycine max","Function unknown","protein_coding" "Glyma.03G042500","No alias","Glycine max","iron regulated 1","protein_coding" "Glyma.03G081600","No alias","Glycine max","Protein of unknown function, DUF593","protein_coding" "Glyma.03G115000","No alias","Glycine max","Plant protein of unknown function (DUF247)","protein_coding" "Glyma.03G133800","No alias","Glycine max","6-phosphogluconate dehydrogenase family protein","protein_coding" "Glyma.03G174700","No alias","Glycine max","Function unknown","protein_coding" "Glyma.03G220500","No alias","Glycine max","Protein kinase superfamily protein","protein_coding" "Glyma.04G011800","No alias","Glycine max","Arabidopsis protein of unknown function (DUF241)","protein_coding" "Glyma.04G088100","No alias","Glycine max","RNA-binding KH domain-containing protein","protein_coding" "Glyma.04G104800","No alias","Glycine max","Protein of unknown function (DUF581)","protein_coding" "Glyma.04G170800","No alias","Glycine max","nodulin MtN21 /EamA-like transporter family protein","protein_coding" "Glyma.04G222800","No alias","Glycine max","Leucine-rich repeat protein kinase family protein","protein_coding" "Glyma.05G082500","No alias","Glycine max","Disease resistance protein (CC-NBS-LRR class) family","protein_coding" "Glyma.05G117700","No alias","Glycine max","Function unknown","protein_coding" "Glyma.05G125700","No alias","Glycine max","Ku80 family protein","protein_coding" "Glyma.05G172100","No alias","Glycine max","CAAX amino terminal protease family protein","protein_coding" "Glyma.05G232400","No alias","Glycine max","Fibronectin type III domain-containing protein","protein_coding" "Glyma.05G238800","No alias","Glycine max","nucleoporin 155","protein_coding" "Glyma.06G021100","No alias","Glycine max","Pseudouridine synthase family protein","protein_coding" "Glyma.06G027900","No alias","Glycine max","Transcription initiation factor IIF, beta subunit","protein_coding" "Glyma.06G092300","No alias","Glycine max","CBL-interacting protein kinase 8","protein_coding" "Glyma.06G095300","No alias","Glycine max","FH interacting protein 1","protein_coding" "Glyma.06G108900","No alias","Glycine max","MAPK/ERK kinase kinase 1","protein_coding" "Glyma.06G128200","No alias","Glycine max","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein","protein_coding" "Glyma.06G171200","No alias","Glycine max","N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein","protein_coding" "Glyma.06G178200","No alias","Glycine max","methyltransferase 1","protein_coding" "Glyma.06G243967","No alias","Glycine max","Ku80 family protein","protein_coding" "Glyma.06G257702","No alias","Glycine max","S-locus lectin protein kinase family protein","protein_coding" "Glyma.06G325700","No alias","Glycine max","Function unknown","protein_coding" "Glyma.07G045967","No alias","Glycine max","pectin methylesterase 1","protein_coding" "Glyma.07G065200","No alias","Glycine max","ATP binding;GTP binding;nucleotide binding;nucleoside-triphosphatases","protein_coding" "Glyma.07G207902","No alias","Glycine max","C2 domain-containing protein / GRAM domain-containing protein","protein_coding" "Glyma.07G269200","No alias","Glycine max","calcineurin B-like 3","protein_coding" "Glyma.08G029200","No alias","Glycine max","ACC oxidase 1","protein_coding" "Glyma.08G053100","No alias","Glycine max","ATP binding;nucleic acid binding;helicases","protein_coding" "Glyma.08G068600","No alias","Glycine max","Function unknown","protein_coding" "Glyma.08G080700","No alias","Glycine max","FAD-binding Berberine family protein","protein_coding" "Glyma.08G097800","No alias","Glycine max","ornithine-delta-aminotransferase","protein_coding" "Glyma.08G116900","No alias","Glycine max","Granulin repeat cysteine protease family protein","protein_coding" "Glyma.08G118900","No alias","Glycine max","glutathione S-transferase tau 7","protein_coding" "Glyma.08G133100","No alias","Glycine max","Function unknown","protein_coding" "Glyma.08G137700","No alias","Glycine max","Function unknown","protein_coding" "Glyma.08G155500","No alias","Glycine max","SAUR-like auxin-responsive protein family","protein_coding" "Glyma.08G173900","No alias","Glycine max","Chaperone DnaJ-domain superfamily protein","protein_coding" "Glyma.08G183100","No alias","Glycine max","tubby like protein 10","protein_coding" "Glyma.08G208000","No alias","Glycine max","Cyclin A2;4","protein_coding" "Glyma.08G225500","No alias","Glycine max","Inorganic H pyrophosphatase family protein","protein_coding" "Glyma.08G240800","No alias","Glycine max","WRKY DNA-binding protein 4","protein_coding" "Glyma.08G346600","No alias","Glycine max","Plant EC metallothionein-like protein, family 15","protein_coding" "Glyma.08G349100","No alias","Glycine max","Function unknown","protein_coding" "Glyma.09G019400","No alias","Glycine max","Galactose oxidase/kelch repeat superfamily protein","protein_coding" "Glyma.09G115700","No alias","Glycine max","Function unknown","protein_coding" "Glyma.09G164400","No alias","Glycine max","Function unknown","protein_coding" "Glyma.09G166000","No alias","Glycine max","eukaryotic release factor 1-3","protein_coding" "Glyma.09G191700","No alias","Glycine max","Enoyl-CoA hydratase/isomerase family","protein_coding" "Glyma.09G214100","No alias","Glycine max","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding" "Glyma.09G238000","No alias","Glycine max","Transmembrane amino acid transporter family protein","protein_coding" "Glyma.09G241800","No alias","Glycine max","homeobox-leucine zipper protein 3","protein_coding" "Glyma.09G255900","No alias","Glycine max","Function unknown","protein_coding" "Glyma.09G258600","No alias","Glycine max","Function unknown","protein_coding" "Glyma.10G094351","No alias","Glycine max","Function unknown","protein_coding" "Glyma.10G106500","No alias","Glycine max","INO80 ortholog","protein_coding" "Glyma.10G177400","No alias","Glycine max","Protein of unknown function (DUF1442)","protein_coding" "Glyma.10G178900","No alias","Glycine max","Pyruvate kinase family protein","protein_coding" "Glyma.10G197400","No alias","Glycine max","RAB GTPase homolog C2A","protein_coding" "Glyma.10G240200","No alias","Glycine max","TCP family transcription factor","protein_coding" "Glyma.10G254500","No alias","Glycine max","xyloglucan endotransglucosylase/hydrolase 10","protein_coding" "Glyma.10G258400","No alias","Glycine max","Family of unknown function (DUF566)","protein_coding" "Glyma.10G272200","No alias","Glycine max","Chaperone DnaJ-domain superfamily protein","protein_coding" "Glyma.10G290900","No alias","Glycine max","beta-hexosaminidase 1","protein_coding" "Glyma.11G017600","No alias","Glycine max","Function unknown","protein_coding" "Glyma.11G021800","No alias","Glycine max","MAP kinase 4","protein_coding" "Glyma.11G054100","No alias","Glycine max","SET domain-containing protein","protein_coding" "Glyma.11G089500","No alias","Glycine max","Protein of unknown function, DUF647","protein_coding" "Glyma.11G194200","No alias","Glycine max","lactoylglutathione lyase family protein / glyoxalase I family protein","protein_coding" "Glyma.11G209027","No alias","Glycine max","polyamine oxidase 4","protein_coding" "Glyma.11G234500","No alias","Glycine max","alpha-soluble NSF attachment protein 2","protein_coding" "Glyma.12G000500","No alias","Glycine max","Agenet domain-containing protein","protein_coding" "Glyma.12G057600","No alias","Glycine max","GTP-binding family protein","protein_coding" "Glyma.12G164100","No alias","Glycine max","auxin response factor 1","protein_coding" "Glyma.12G170000","No alias","Glycine max","DNA helicase (RECQl4A)","protein_coding" "Glyma.12G182100","No alias","Glycine max","Plant protein of unknown function (DUF868)","protein_coding" "Glyma.12G222700","No alias","Glycine max","Leucine-rich repeat (LRR) family protein","protein_coding" "Glyma.13G003400","No alias","Glycine max","Cysteine proteinases superfamily protein","protein_coding" "Glyma.13G033700","No alias","Glycine max","DNA polymerase epsilon catalytic subunit","protein_coding" "Glyma.13G052400","No alias","Glycine max","Function unknown","protein_coding" "Glyma.13G063600","No alias","Glycine max","cullin 3","protein_coding" "Glyma.13G080300","No alias","Glycine max","ARM repeat superfamily protein","protein_coding" "Glyma.13G099600","No alias","Glycine max","heavy metal atpase 2","protein_coding" "Glyma.13G130100","No alias","Glycine max","phytochrome interacting factor 3-like 5","protein_coding" "Glyma.13G161900","No alias","Glycine max","purple acid phosphatase 26","protein_coding" "Glyma.13G212700","No alias","Glycine max","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein","protein_coding" "Glyma.13G218400","No alias","Glycine max","Function unknown","protein_coding" "Glyma.13G254200","No alias","Glycine max","fatty acid amide hydrolase","protein_coding" "Glyma.13G260200","No alias","Glycine max","Function unknown","protein_coding" "Glyma.13G268600","No alias","Glycine max","SecY protein transport family protein","protein_coding" "Glyma.13G312300","No alias","Glycine max","BRI1 suppressor 1 (BSU1)-like 2","protein_coding" "Glyma.13G362100","No alias","Glycine max","Function unknown","protein_coding" "Glyma.14G046400","No alias","Glycine max","CLAVATA3/ESR-RELATED 20","protein_coding" "Glyma.14G087700","No alias","Glycine max","TBP-associated factor 4","protein_coding" "Glyma.14G181500","No alias","Glycine max","basic helix-loop-helix (bHLH) DNA-binding superfamily protein","protein_coding" "Glyma.14G214000","No alias","Glycine max","DNA repair protein Rad4 family","protein_coding" "Glyma.15G013700","No alias","Glycine max","Function unknown","protein_coding" "Glyma.15G016500","No alias","Glycine max","HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain","protein_coding" "Glyma.15G065900","No alias","Glycine max","B-box type zinc finger family protein","protein_coding" "Glyma.15G067500","No alias","Glycine max","Function unknown","protein_coding" "Glyma.15G069200","No alias","Glycine max","Protein of unknown function (DUF707)","protein_coding" "Glyma.15G213400","No alias","Glycine max","Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain","protein_coding" "Glyma.15G232600","No alias","Glycine max","Disease resistance protein (TIR-NBS-LRR class) family","protein_coding" "Glyma.15G241400","No alias","Glycine max","exocyst subunit exo70 family protein A1","protein_coding" "Glyma.15G257700","No alias","Glycine max","NAC (No Apical Meristem) domain transcriptional regulator superfamily protein","protein_coding" "Glyma.16G043400","No alias","Glycine max","apyrase 2","protein_coding" "Glyma.16G043700","No alias","Glycine max","apyrase 2","protein_coding" "Glyma.16G082700","No alias","Glycine max","serine carboxypeptidase-like 20","protein_coding" "Glyma.16G155400","No alias","Glycine max","Acyl-CoA N-acyltransferases (NAT) superfamily protein","protein_coding" "Glyma.16G183550","No alias","Glycine max","disease resistance family protein / LRR family protein","protein_coding" "Glyma.17G005802","No alias","Glycine max","Ku80 family protein","protein_coding" "Glyma.17G038600","No alias","Glycine max","Function unknown","protein_coding" "Glyma.17G054700","No alias","Glycine max","CwfJ-like family protein / zinc finger (CCCH-type) family protein","protein_coding" "Glyma.17G142402","No alias","Glycine max","Nodulin MtN21 /EamA-like transporter family protein","protein_coding" "Glyma.17G178750","No alias","Glycine max","Ribonuclease H-like superfamily protein","protein_coding" "Glyma.17G190900","No alias","Glycine max","Homeodomain-like protein","protein_coding" "Glyma.17G212150","No alias","Glycine max","PYR1-like 4","protein_coding" "Glyma.17G221100","No alias","Glycine max","HOPW1-1-interacting 2","protein_coding" "Glyma.17G232250","No alias","Glycine max","Function unknown","protein_coding" "Glyma.17G253000","No alias","Glycine max","Sec14p-like phosphatidylinositol transfer family protein","protein_coding" "Glyma.17G262500","No alias","Glycine max","Function unknown","protein_coding" "Glyma.18G002700","No alias","Glycine max","Putative methyltransferase family protein","protein_coding" "Glyma.18G013200","No alias","Glycine max","mitogen-activated protein kinase phosphatase 1","protein_coding" "Glyma.18G047800","No alias","Glycine max","Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family","protein_coding" "Glyma.18G075400","No alias","Glycine max","Protein of unknown function DUF106, transmembrane","protein_coding" "Glyma.18G177951","No alias","Glycine max","Function unknown","protein_coding" "Glyma.18G181700","No alias","Glycine max","expansin A4","protein_coding" "Glyma.18G195500","No alias","Glycine max","RING/U-box superfamily protein","protein_coding" "Glyma.18G200700","No alias","Glycine max","Function unknown","protein_coding" "Glyma.18G240800","No alias","Glycine max","Leucine-rich repeat (LRR) family protein","protein_coding" "Glyma.19G024400","No alias","Glycine max","RNA-binding KH domain-containing protein","protein_coding" "Glyma.19G031300","No alias","Glycine max","Function unknown","protein_coding" "Glyma.19G075700","No alias","Glycine max","Proteasome component (PCI) domain protein","protein_coding" "Glyma.19G133300","No alias","Glycine max","2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein","protein_coding" "Glyma.19G162700","No alias","Glycine max","BET1P/SFT1P-like protein 14A","protein_coding" "Glyma.19G232901","No alias","Glycine max","regulatory particle triple-A ATPase 5A","protein_coding" "Glyma.19G248400","No alias","Glycine max","Function unknown","protein_coding" "Glyma.20G024300","No alias","Glycine max","DNAJ heat shock N-terminal domain-containing protein","protein_coding" "Glyma.20G050150","No alias","Glycine max","Transducin/WD40 repeat-like superfamily protein","protein_coding" "Glyma.20G055100","No alias","Glycine max","Function unknown","protein_coding" "Glyma.20G058900","No alias","Glycine max","Function unknown","protein_coding" "Glyma.20G094900","No alias","Glycine max","ENHANCED DISEASE RESISTANCE 2","protein_coding" "Glyma.20G097001","No alias","Glycine max","Uncharacterized protein","protein_coding" "Glyma.20G121800","No alias","Glycine max","Zinc finger C-x8-C-x5-C-x3-H type family protein","protein_coding" "Glyma.20G182700","No alias","Glycine max","Function unknown","protein_coding" "Glyma.20G187800","No alias","Glycine max","Function unknown","protein_coding" "Glyma.20G189900","No alias","Glycine max","glycosyltransferase family protein 47","protein_coding" "Glyma.20G191900","No alias","Glycine max","Galactose oxidase/kelch repeat superfamily protein","protein_coding" "Glyma.20G226900","No alias","Glycine max","Leucine-rich receptor-like protein kinase family protein","protein_coding" "Glyma.20G233700","No alias","Glycine max","MIRO-related GTP-ase 1","protein_coding" "Glyma.20G248800","No alias","Glycine max","KU70 homolog","protein_coding" "GRMZM2G001272","No alias","Zea mays","tubby like protein 10","protein_coding" "GRMZM2G003493","No alias","Zea mays","SNF1-related protein kinase regulatory subunit gamma 1","protein_coding" "GRMZM2G007754","No alias","Zea mays","global transcription factor group A2","protein_coding" "GRMZM2G008507","No alias","Zea mays","Sucrose-phosphate synthase family protein","protein_coding" "GRMZM2G009901","No alias","Zea mays","Plant protein of unknown function (DUF868)","protein_coding" "GRMZM2G011269","No alias","Zea mays","Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein","protein_coding" "GRMZM2G015906","No alias","Zea mays","saposin B domain-containing protein","protein_coding" "GRMZM2G016558","No alias","Zea mays","ankyrin repeat family protein","protein_coding" "GRMZM2G018441","No alias","Zea mays","2-phosphoglycolate phosphatase 1","protein_coding" "GRMZM2G021517","No alias","Zea mays","CBL-interacting protein kinase 8","protein_coding" "GRMZM2G023105","No alias","Zea mays","ENTH/VHS/GAT family protein","protein_coding" "GRMZM2G024624","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G031429","No alias","Zea mays","Esterase/lipase/thioesterase family protein","protein_coding" "GRMZM2G037650","No alias","Zea mays","myb domain protein 42","protein_coding" "GRMZM2G039106","No alias","Zea mays","Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain","protein_coding" "GRMZM2G039385","No alias","Zea mays","phosphatidyl serine synthase family protein","protein_coding" "GRMZM2G040052","No alias","Zea mays","MA3 domain-containing protein","protein_coding" "GRMZM2G042154","No alias","Zea mays","Major facilitator superfamily protein","protein_coding" "GRMZM2G044498","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G048661","No alias","Zea mays","RNI-like superfamily protein","protein_coding" "GRMZM2G048806","No alias","Zea mays","Plant protein of unknown function (DUF827)","protein_coding" "GRMZM2G052658","No alias","Zea mays","Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain","protein_coding" "GRMZM2G054109","No alias","Zea mays","Calmodulin-binding protein","protein_coding" "GRMZM2G057820","No alias","Zea mays","iron-regulated protein 3","protein_coding" "GRMZM2G062412","No alias","Zea mays","AFG1-like ATPase family protein","protein_coding" "GRMZM2G062761","No alias","Zea mays","MAP kinase 9","protein_coding" "GRMZM2G066489","No alias","Zea mays","glutamate receptor 3.3","protein_coding" "GRMZM2G066801","No alias","Zea mays","Major facilitator superfamily protein","protein_coding" "GRMZM2G067376","No alias","Zea mays","ovate family protein 1","protein_coding" "GRMZM2G069928","No alias","Zea mays","Ring/U-Box superfamily protein","protein_coding" "GRMZM2G071166","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G074818","No alias","Zea mays","Rad21/Rec8-like family protein","protein_coding" "GRMZM2G075011","No alias","Zea mays","Phosphoinositide phosphatase family protein","protein_coding" "GRMZM2G077202","No alias","Zea mays","chloroplast beta-amylase","protein_coding" "GRMZM2G077436","No alias","Zea mays","sigma factor E","protein_coding" "GRMZM2G080530","No alias","Zea mays","Outer arm dynein light chain 1 protein","protein_coding" "GRMZM2G083367","No alias","Zea mays","BTB/POZ domain-containing protein","protein_coding" "GRMZM2G083402","No alias","Zea mays","Protein kinase superfamily protein","protein_coding" "GRMZM2G083411","No alias","Zea mays","ENHANCED DOWNY MILDEW 2","protein_coding" "GRMZM2G084944","No alias","Zea mays","Protein of unknown function (DUF819)","protein_coding" "GRMZM2G087878","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G088356","No alias","Zea mays","Serinc-domain containing serine and sphingolipid biosynthesis protein","protein_coding" "GRMZM2G088849","No alias","Zea mays","golgi nucleotide sugar transporter 4","protein_coding" "GRMZM2G089149","No alias","Zea mays","Protein of unknown function, DUF647","protein_coding" "GRMZM2G089351","No alias","Zea mays","ATP binding microtubule motor family protein","protein_coding" "GRMZM2G090152","No alias","Zea mays","Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein","protein_coding" "GRMZM2G091047","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G091992","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G094535","No alias","Zea mays","Protein of unknown function (DUF567)","protein_coding" "GRMZM2G095141","No alias","Zea mays","Aldolase superfamily protein","protein_coding" "GRMZM2G095144","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G095372","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G095562","No alias","Zea mays","Regulator of chromosome condensation (RCC1) family protein","protein_coding" "GRMZM2G096331","No alias","Zea mays","receptor like protein 14","protein_coding" "GRMZM2G097434","No alias","Zea mays","Phosphoinositide phosphatase family protein","protein_coding" "GRMZM2G099131","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G100263","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G101519","No alias","Zea mays","bromodomain and extraterminal domain protein 10","protein_coding" "GRMZM2G101741","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G104147","No alias","Zea mays","Protein of unknown function (DUF803)","protein_coding" "GRMZM2G105933","No alias","Zea mays","Protein kinase superfamily protein","protein_coding" "GRMZM2G111208","No alias","Zea mays","phosphatidylinositol-4-phosphate 5-kinase family protein","protein_coding" "GRMZM2G114575","No alias","Zea mays","CBL-interacting protein kinase 1","protein_coding" "GRMZM2G114739","No alias","Zea mays","sulfite oxidase","protein_coding" "GRMZM2G117459","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G117754","No alias","Zea mays","GDSL-like Lipase/Acylhydrolase superfamily protein","protein_coding" "GRMZM2G118208","No alias","Zea mays","phosphate transporter 3;1","protein_coding" "GRMZM2G118693","No alias","Zea mays","Homeodomain-like superfamily protein","protein_coding" "GRMZM2G119272","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G119769","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G122258","No alias","Zea mays","protein serine/threonine phosphatases;protein kinases;catalytics;cAMP-dependent protein kinase regulators;ATP binding;protein serine/threonine phosphatases","protein_coding" "GRMZM2G125140","No alias","Zea mays","Calcineurin-like metallo-phosphoesterase superfamily protein","protein_coding" "GRMZM2G127123","No alias","Zea mays","beta-galactosidase 8","protein_coding" "GRMZM2G128214","No alias","Zea mays","diacylglycerol kinase 7","protein_coding" "GRMZM2G128301","No alias","Zea mays","low-molecular-weight cysteine-rich 72","protein_coding" "GRMZM2G129268","No alias","Zea mays","Protein of unknown function (DUF803)","protein_coding" "GRMZM2G132759","No alias","Zea mays","ubiquitin-conjugating enzyme 11","protein_coding" "GRMZM2G135337","No alias","Zea mays","ubiquitin activating enzyme 2","protein_coding" "GRMZM2G137968","No alias","Zea mays","Ku80 family protein","protein_coding" "GRMZM2G138566","No alias","Zea mays","calcium-binding EF hand family protein","protein_coding" "GRMZM2G140302","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G140908","No alias","Zea mays","zinc ion binding","protein_coding" "GRMZM2G140915","No alias","Zea mays","Cytochrome P450 superfamily protein","protein_coding" "GRMZM2G146378","No alias","Zea mays","mitochondrial substrate carrier family protein","protein_coding" "GRMZM2G146514","No alias","Zea mays","zinc finger protein 1","protein_coding" "GRMZM2G146697","No alias","Zea mays","Adaptin family protein","protein_coding" "GRMZM2G146878","No alias","Zea mays","Plant protein of unknown function (DUF827)","protein_coding" "GRMZM2G149040","No alias","Zea mays","Basic-leucine zipper (bZIP) transcription factor family protein","protein_coding" "GRMZM2G149923","No alias","Zea mays","calmodulin 1","protein_coding" "GRMZM2G150906","No alias","Zea mays","Raffinose synthase family protein","protein_coding" "GRMZM2G154178","No alias","Zea mays","expansin B4","protein_coding" "GRMZM2G154397","No alias","Zea mays","Adenosylmethionine decarboxylase family protein","protein_coding" "GRMZM2G155357","No alias","Zea mays","phosphorylethanolamine cytidylyltransferase 1","protein_coding" "GRMZM2G155806","No alias","Zea mays","pumilio 7","protein_coding" "GRMZM2G162078","No alias","Zea mays","Sugar isomerase (SIS) family protein","protein_coding" "GRMZM2G162347","No alias","Zea mays","SCP1-like small phosphatase 4","protein_coding" "GRMZM2G164064","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G167957","No alias","Zea mays","Inositol 1,3,4-trisphosphate 5/6-kinase family protein","protein_coding" "GRMZM2G169458","No alias","Zea mays","aldehyde dehydrogenase 3F1","protein_coding" "GRMZM2G170035","No alias","Zea mays","proline extensin-like receptor kinase 1","protein_coding" "GRMZM2G170567","No alias","Zea mays","transcription activators","protein_coding" "GRMZM2G171410","No alias","Zea mays","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein","protein_coding" "GRMZM2G173644","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G174596","No alias","Zea mays","cell division control 2","protein_coding" "GRMZM2G180319","No alias","Zea mays","LOB domain-containing protein 2","protein_coding" "GRMZM2G306062","No alias","Zea mays","DNAse I-like superfamily protein","protein_coding" "GRMZM2G310115","No alias","Zea mays","plectin-related","protein_coding" "GRMZM2G312301","No alias","Zea mays","ENHANCED DISEASE RESISTANCE 2","protein_coding" "GRMZM2G313181","No alias","Zea mays","wall-associated kinase 2","protein_coding" "GRMZM2G317330","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G318527","No alias","Zea mays","Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain","protein_coding" "GRMZM2G323672","No alias","Zea mays","Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain","protein_coding" "GRMZM2G361652","No alias","Zea mays","Major facilitator superfamily protein","protein_coding" "GRMZM2G366778","No alias","Zea mays","general regulatory factor 7","protein_coding" "GRMZM2G376416","No alias","Zea mays","beta glucosidase 11","protein_coding" "GRMZM2G382415","No alias","Zea mays","Transducin family protein / WD-40 repeat family protein","protein_coding" "GRMZM2G395114","No alias","Zea mays","sulfate transporter 91","protein_coding" "GRMZM2G398529","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G411956","No alias","Zea mays","Cysteine proteinases superfamily protein","protein_coding" "GRMZM2G414496","No alias","Zea mays","KU70 homolog","protein_coding" "GRMZM2G420926","No alias","Zea mays","protein phosphatase 2A-3","protein_coding" "GRMZM2G423111","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G434317","No alias","Zea mays","Protein of unknown function (DUF707)","protein_coding" "GRMZM2G440459","No alias","Zea mays","Haloacid dehalogenase-like hydrolase (HAD) superfamily protein","protein_coding" "GRMZM2G448739","No alias","Zea mays","Tetratricopeptide repeat (TPR)-like superfamily protein","protein_coding" "GRMZM2G448925","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G451187","No alias","Zea mays","Terpenoid cyclases/Protein prenyltransferases superfamily protein","protein_coding" "GRMZM2G464575","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G471108","No alias","Zea mays","myosin XI B","protein_coding" "GRMZM2G474658","No alias","Zea mays","ABC-2 type transporter family protein","protein_coding" "GRMZM2G474769","No alias","Zea mays","Homeodomain-like superfamily protein","protein_coding" "GRMZM2G474864","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G480978","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G488001","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G561273","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G578314","No alias","Zea mays","tetratricopeptide repeat (TPR)-containing protein","protein_coding" "GRMZM2G579772","No alias","Zea mays","Function unknown","protein_coding" "GRMZM2G701585","No alias","Zea mays","DNAse I-like superfamily protein","protein_coding" "GRMZM5G810374","No alias","Zea mays","Function unknown","protein_coding" "GRMZM5G814314","No alias","Zea mays","ubiquitin conjugating enzyme 9","protein_coding" "GRMZM5G820091","No alias","Zea mays","Function unknown","protein_coding" "GRMZM5G822888","No alias","Zea mays","Function unknown","protein_coding" "GRMZM5G852502","No alias","Zea mays","Plant stearoyl-acyl-carrier-protein desaturase family protein","protein_coding" "GRMZM5G875735","No alias","Zea mays","Function unknown","protein_coding" "GRMZM5G883969","No alias","Zea mays","Function unknown","protein_coding" "GRMZM6G602703","No alias","Zea mays","AWPM-19-like family protein","protein_coding" "HORVU0Hr1G021850.2","No alias","Hordeum vulgare","regulatory protein *(FLZ) of SnRK1 complex","protein_coding" "HORVU0Hr1G038620.1","No alias","Hordeum vulgare","component *(KU80) of Ku70-Ku80 helicase complex","protein_coding" "HORVU1Hr1G021530.1","No alias","Hordeum vulgare","regulatory protein *(DRB2) of miRNA biogenesis pathway","protein_coding" "HORVU1Hr1G022420.1","No alias","Hordeum vulgare","component *(U1A) of U1 snRNP complex","protein_coding" "HORVU1Hr1G033060.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU1Hr1G042560.3","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU1Hr1G044350.16","No alias","Hordeum vulgare","EC_6.5 ligase forming phosphoric ester bond","protein_coding" "HORVU1Hr1G047690.1","No alias","Hordeum vulgare","cofactor of post-CCT Tubulin folding pathway *(TFC-D)","protein_coding" "HORVU1Hr1G064040.3","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU1Hr1G064480.1","No alias","Hordeum vulgare","RAB-GTPase GDP-dissociation inhibitor *(RAB-GDI)","protein_coding" "HORVU1Hr1G074110.1","No alias","Hordeum vulgare","histone deacetylase *(HDA8) & class-II histone deacetylase","protein_coding" "HORVU1Hr1G075000.9","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU1Hr1G075550.1","No alias","Hordeum vulgare","ATP-dependent phosphofructokinase","protein_coding" "HORVU1Hr1G078030.47","No alias","Hordeum vulgare","TruD-type tRNA pseudouridine synthase","protein_coding" "HORVU1Hr1G079900.2","No alias","Hordeum vulgare","flap structure-specific endonuclease *(FEN1) & flap structure-specific endonuclease *(FEN1)","protein_coding" "HORVU1Hr1G083390.16","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU1Hr1G092120.1","No alias","Hordeum vulgare","regulatory component *(Tom7) of outer mitochondrion membrane TOM translocation system","protein_coding" "HORVU2Hr1G013130.1","No alias","Hordeum vulgare","E3 ubiquitin protein ligase *(PUB32) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU2Hr1G021360.21","No alias","Hordeum vulgare","TCX/CPP-type transcription factor & component *(TCX5/6) of DREAM cell cycle regulatory complex","protein_coding" "HORVU2Hr1G024780.11","No alias","Hordeum vulgare","scaffold component *(MO25) of RAM signalling pathway","protein_coding" "HORVU2Hr1G030930.2","No alias","Hordeum vulgare","EC_1.1 oxidoreductase acting on CH-OH group of donor","protein_coding" "HORVU2Hr1G037470.1","No alias","Hordeum vulgare","nucleocytoplasmic import karyopherin *(IMB3)","protein_coding" "HORVU2Hr1G058940.3","No alias","Hordeum vulgare","miRNA/siRNA methyltransferase *(HEN1)","protein_coding" "HORVU2Hr1G064150.1","No alias","Hordeum vulgare","monosaccharide transporter *(STP)","protein_coding" "HORVU2Hr1G077010.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU2Hr1G080860.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU2Hr1G092600.4","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU2Hr1G093400.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU2Hr1G104580.2","No alias","Hordeum vulgare","transcription factor *(REVEILLE)","protein_coding" "HORVU2Hr1G112320.1","No alias","Hordeum vulgare","phosphoinositide transfer protein *(SFH)","protein_coding" "HORVU2Hr1G114340.4","No alias","Hordeum vulgare","EC_1.1 oxidoreductase acting on CH-OH group of donor","protein_coding" "HORVU2Hr1G114940.3","No alias","Hordeum vulgare","cyclic nucleotide-gated cation channel *(CNGC)","protein_coding" "HORVU2Hr1G122660.10","No alias","Hordeum vulgare","non-heme diiron quinol oxidase *(PTOX)","protein_coding" "HORVU3Hr1G014890.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU3Hr1G020250.8","No alias","Hordeum vulgare","EC_6.1 ligase forming carbon-oxygen bond & glutamine-tRNA ligase","protein_coding" "HORVU3Hr1G023970.2","No alias","Hordeum vulgare","glutaredoxin maturation factor (GRXS15) of iron-sulfur cluster assembly machinery","protein_coding" "HORVU3Hr1G036870.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU3Hr1G054730.1","No alias","Hordeum vulgare","mRNA helicase *(RH31)","protein_coding" "HORVU3Hr1G058150.3","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU3Hr1G070960.2","No alias","Hordeum vulgare","Golgin-type membrane tethering protein *(GC1)","protein_coding" "HORVU3Hr1G077400.1","No alias","Hordeum vulgare","component *(mS78/mS79) of small mitoribosomal-subunit proteome","protein_coding" "HORVU3Hr1G094450.2","No alias","Hordeum vulgare","class-I glucosidase I & EC_3.2 glycosylase","protein_coding" "HORVU3Hr1G105290.1","No alias","Hordeum vulgare","EC_3.2 glycosylase","protein_coding" "HORVU3Hr1G114440.2","No alias","Hordeum vulgare","regulatory protein *(CYCA) of cell cycle","protein_coding" "HORVU4Hr1G009500.1","No alias","Hordeum vulgare","component *(WDR5/SWD3) of COMPASS histone trimethylation complex","protein_coding" "HORVU4Hr1G014760.3","No alias","Hordeum vulgare","LRR-Xa protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU4Hr1G020660.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU4Hr1G023490.7","No alias","Hordeum vulgare","CDKB protein kinase & catalytic component *(CDKB) of cyclin-dependent kinase complex & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU4Hr1G028610.1","No alias","Hordeum vulgare","nucleocytoplasmic transport karyopherin *(PLANTKAP)","protein_coding" "HORVU4Hr1G036960.1","No alias","Hordeum vulgare","3-beta hydroxysteroid dehydrogenase of phytosterol C4-demethylation complex & EC_1.1 oxidoreductase acting on CH-OH group of donor","protein_coding" "HORVU4Hr1G040660.1","No alias","Hordeum vulgare","subunit theta *(CCT8) of CCT chaperonin folding complex","protein_coding" "HORVU4Hr1G048110.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU4Hr1G050280.1","No alias","Hordeum vulgare","lytic vacuole protein sorting receptor *(VSR)","protein_coding" "HORVU4Hr1G051720.1","No alias","Hordeum vulgare","channel-forming component *(Tom40) of outer mitochondrion membrane TOM translocation system","protein_coding" "HORVU4Hr1G059150.6","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU4Hr1G062760.3","No alias","Hordeum vulgare","RLCK-XI receptor-like protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU4Hr1G063590.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU4Hr1G067650.2","No alias","Hordeum vulgare","EC_6.1 ligase forming carbon-oxygen bond & methionine-tRNA ligase","protein_coding" "HORVU4Hr1G067780.6","No alias","Hordeum vulgare","transcription factor *(YABBY)","protein_coding" "HORVU4Hr1G073580.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU4Hr1G074790.8","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU4Hr1G077000.2","No alias","Hordeum vulgare","pseudouridine monophosphate glycosylase *(PUMY)","protein_coding" "HORVU4Hr1G082690.4","No alias","Hordeum vulgare","exoribonuclease *(RRP44a)","protein_coding" "HORVU5Hr1G000150.4","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G002000.8","No alias","Hordeum vulgare","neutral ceramidase *(NCER) & EC_3.5 hydrolase acting on carbon-nitrogen bond, other than peptide bond","protein_coding" "HORVU5Hr1G012090.6","No alias","Hordeum vulgare","component *(KU70) of Ku70-Ku80 helicase complex","protein_coding" "HORVU5Hr1G019030.9","No alias","Hordeum vulgare","EC_2.7 transferase transferring phosphorus-containing group & pyrophosphate-dependent phosphofructokinase","protein_coding" "HORVU5Hr1G019820.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G023530.3","No alias","Hordeum vulgare","regulatory protein *(CBP60) of systemic acquired resistance","protein_coding" "HORVU5Hr1G023880.1","No alias","Hordeum vulgare","component *(TRS130/CLUB) of TRAPP-II complex-specific components","protein_coding" "HORVU5Hr1G024500.6","No alias","Hordeum vulgare","phosphodiesterase *(PIG-O)","protein_coding" "HORVU5Hr1G027730.2","No alias","Hordeum vulgare","subunit beta of phenylalanine-tRNA ligase complex","protein_coding" "HORVU5Hr1G027890.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G031470.8","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G041240.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G070240.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU5Hr1G075870.1","No alias","Hordeum vulgare","ASK-type linker component of SCF E3 ubiquitin ligase complexes","protein_coding" "HORVU5Hr1G092180.1","No alias","Hordeum vulgare","nucleoporin of nuclear pore complex *(GP210)","protein_coding" "HORVU5Hr1G103360.5","No alias","Hordeum vulgare","regulatory component *(ALIS) of ALA-ALIS flippase complex & regulatory component *(ALIS) of phospholipid flippase complex","protein_coding" "HORVU6Hr1G015050.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU6Hr1G020420.1","No alias","Hordeum vulgare","scaffold nucleoporin of nuclear pore complex *(NUP160)","protein_coding" "HORVU6Hr1G024100.1","No alias","Hordeum vulgare","multifunctional enzyme *(MFP)","protein_coding" "HORVU6Hr1G027050.1","No alias","Hordeum vulgare","component *(NRPC1) of RNA polymerase III complex","protein_coding" "HORVU6Hr1G027360.2","No alias","Hordeum vulgare","EC_2.8 transferase transferring sulfur-containing group & CTU1-URM1 pathway mercaptopyruvate sulfurtransferase *(MST/RDH) & mercaptopyruvate sulfurtransferase","protein_coding" "HORVU6Hr1G027570.6","No alias","Hordeum vulgare","component *(RRP45) of exosome EXO9 core complex","protein_coding" "HORVU6Hr1G029880.18","No alias","Hordeum vulgare","component *(NRPC2) of RNA polymerase III complex","protein_coding" "HORVU6Hr1G053890.9","No alias","Hordeum vulgare","component *(NOC1) of ribosomal-subunit proteome nuclear export complex","protein_coding" "HORVU6Hr1G072070.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU6Hr1G072640.1","No alias","Hordeum vulgare","pre-40S ribosomal subunit assembly factor *(RRP7)","protein_coding" "HORVU6Hr1G074220.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU6Hr1G083200.3","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU6Hr1G085560.4","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU6Hr1G087300.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU7Hr1G026860.5","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU7Hr1G028060.3","No alias","Hordeum vulgare","component *(EXO70) of Exocyst complex","protein_coding" "HORVU7Hr1G029260.1","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU7Hr1G035870.4","No alias","Hordeum vulgare","assembly factor involved in RuBisCo assembly *(RbcX)","protein_coding" "HORVU7Hr1G036000.9","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU7Hr1G039760.2","No alias","Hordeum vulgare","U-Box-group-II E3 ubiquitin ligase","protein_coding" "HORVU7Hr1G043750.22","No alias","Hordeum vulgare","mannosyltransferase-II *(PIG-V)","protein_coding" "HORVU7Hr1G045770.7","No alias","Hordeum vulgare","microtubule-associated protein *(MAP65-2)","protein_coding" "HORVU7Hr1G047120.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU7Hr1G047470.1","No alias","Hordeum vulgare","active component *(ALA) of ALA-ALIS flippase complex & P4-type ATPase component *(ALA) of phospholipid flippase complex & EC_3.6 hydrolase acting on acid anhydride","protein_coding" "HORVU7Hr1G047980.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU7Hr1G048570.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU7Hr1G050770.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU7Hr1G054920.1","No alias","Hordeum vulgare","component *(Tim8) of inner mitochondrion membrane TIM22 insertion system","protein_coding" "HORVU7Hr1G056570.13","No alias","Hordeum vulgare","component *(NAP1) of SCAR/WAVE ARP2/3-activating complex","protein_coding" "HORVU7Hr1G065990.6","No alias","Hordeum vulgare","regulatory protein *(GluTRBP) of glutamyl-tRNA reductase activity","protein_coding" "HORVU7Hr1G083070.5","No alias","Hordeum vulgare","Unknown function","protein_coding" "HORVU7Hr1G088430.1","No alias","Hordeum vulgare","LRR-XV protein kinase & SCREW peptide receptor *(NUT) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU7Hr1G093020.1","No alias","Hordeum vulgare","type-2 peroxiredoxin *(PrxII)","protein_coding" "HORVU7Hr1G099340.17","No alias","Hordeum vulgare","EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "HORVU7Hr1G118230.2","No alias","Hordeum vulgare","Unknown function","protein_coding" "Kfl00001_0640","kfl00001_0640_v1.1","Klebsormidium nitens","(at5g08470 : 373.0) an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals.; peroxisome 1 (PEX1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation, response to stress; LOCATED IN: peroxisome; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Aspartate decarboxylase-like fold (InterPro:IPR009010), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peroxisome biogenesis factor 1, N-terminal (InterPro:IPR015342); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 45022 Blast hits to 26157 proteins in 3042 species: Archae - 1897; Bacteria - 15808; Metazoa - 7500; Fungi - 5597; Plants - 4311; Viruses - 29; Other Eukaryotes - 9880 (source: NCBI BLink). & (p54774|cdc48_soybn : 196.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 746.0) & (original description: no original description)","protein_coding" "Kfl00004_0200","kfl00004_0200_v1.1","Klebsormidium nitens","(at5g65780 : 174.0) encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant; ATBCAT-5; FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: little nuclei4 (TAIR:AT5G65770.3). & (reliability: 348.0) & (original description: no original description)","protein_coding" "Kfl00004_0260","kfl00004_0260_v1.1","Klebsormidium nitens","(at2g46560 : 295.0) transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat (InterPro:IPR001680), RAVE protein 1 C-terminal (InterPro:IPR022033), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); Has 2273 Blast hits to 1588 proteins in 291 species: Archae - 0; Bacteria - 657; Metazoa - 469; Fungi - 690; Plants - 137; Viruses - 0; Other Eukaryotes - 320 (source: NCBI BLink). & (reliability: 590.0) & (original description: no original description)","protein_coding" "Kfl00004_0290","kfl00004_0290_v1.1","Klebsormidium nitens","(at2g26780 : 682.0) ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 448 Blast hits to 380 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 190; Plants - 63; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). & (reliability: 1364.0) & (original description: no original description)","protein_coding" "Kfl00004_0450","kfl00004_0450_v1.1","Klebsormidium nitens","(at4g36090 : 252.0) oxidoreductase, 2OG-Fe(II) oxygenase family protein; BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT2G17970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 494.0) & (original description: no original description)","protein_coding" "Kfl00005_0110","kfl00005_0110_v1.1","Klebsormidium nitens","(at1g08190 : 867.0) Might be involved in protein sorting to the vacuole.; vacuolar protein sorting 41 (VPS41); FUNCTIONS IN: binding, nucleotide binding, zinc ion binding; INVOLVED IN: gravitropism, protein targeting to vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, RING-type (InterPro:IPR001841), WD40 repeat (InterPro:IPR001680), Vacuolar protein sorting-associated protein 41 (InterPro:IPR016902), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781), Clathrin, heavy chain/VPS, 7-fold repeat (InterPro:IPR000547); Has 13288 Blast hits to 4251 proteins in 360 species: Archae - 4; Bacteria - 340; Metazoa - 7814; Fungi - 1141; Plants - 584; Viruses - 346; Other Eukaryotes - 3059 (source: NCBI BLink). & (reliability: 1734.0) & (original description: no original description)","protein_coding" "Kfl00005_0310","kfl00005_0310_v1.1","Klebsormidium nitens","(at2g38280 : 985.0) Encodes a protein with in vitro AMP deaminase activity that is involved in embryogenesis. Homozygous mutant embryos fail to develop past the zygote stage.; EMBRYONIC FACTOR1 (FAC1); FUNCTIONS IN: AMP deaminase activity; INVOLVED IN: purine ribonucleoside monophosphate biosynthetic process, embryo development ending in seed dormancy; LOCATED IN: cytosol, nucleus, microsome; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Adenosine/AMP deaminase (InterPro:IPR001365), Adenosine/AMP deaminase active site (InterPro:IPR006650), AMP deaminase (InterPro:IPR006329); Has 1191 Blast hits to 1128 proteins in 362 species: Archae - 0; Bacteria - 226; Metazoa - 390; Fungi - 271; Plants - 78; Viruses - 0; Other Eukaryotes - 226 (source: NCBI BLink). & (q84np7|ampd_orysa : 964.0) Probable AMP deaminase (EC 3.5.4.6) - Oryza sativa (Rice) & (reliability: 1970.0) & (original description: no original description)","protein_coding" "Kfl00006_0800","kfl00006_0800_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00007_0090","kfl00007_0090_v1.1","Klebsormidium nitens","(at4g12570 : 218.0) Knock-out mutants showed accelerated senescence of leaves.; ubiquitin protein ligase 5 (UPL5); CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 1 (TAIR:AT1G55860.1); Has 13201 Blast hits to 8328 proteins in 676 species: Archae - 0; Bacteria - 15; Metazoa - 6234; Fungi - 1825; Plants - 2664; Viruses - 167; Other Eukaryotes - 2296 (source: NCBI BLink). & (reliability: 436.0) & (original description: no original description)","protein_coding" "Kfl00007_0100","kfl00007_0100_v1.1","Klebsormidium nitens","(at4g12570 : 218.0) Knock-out mutants showed accelerated senescence of leaves.; ubiquitin protein ligase 5 (UPL5); CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 1 (TAIR:AT1G55860.1); Has 13201 Blast hits to 8328 proteins in 676 species: Archae - 0; Bacteria - 15; Metazoa - 6234; Fungi - 1825; Plants - 2664; Viruses - 167; Other Eukaryotes - 2296 (source: NCBI BLink). & (reliability: 436.0) & (original description: no original description)","protein_coding" "Kfl00009_0040","kfl00009_0040_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00010_0530","kfl00010_0530_v1.1","Klebsormidium nitens","(at1g48420 : 461.0) Encodes an enzyme that decomposes D-cysteine into pyruvate, H2S, and NH3. Only D-cysteine but not L-cysteine was converted by D-CDes to pyruvate, H2S, and NH3. There is conflicting evidence on its 1-aminocyclopropane-1-carboxylate deaminase activity. Involved in regulating ethylene levels.; D-cysteine desulfhydrase (D-CDES); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate deaminase activity, D-cysteine desulfhydrase activity, cobalt ion binding, catalytic activity; INVOLVED IN: response to cadmium ion, ethylene biosynthetic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926), Pyridoxal phosphate-dependent deaminase (InterPro:IPR005966); BEST Arabidopsis thaliana protein match is: Pyridoxal-5'-phosphate-dependent enzyme family protein (TAIR:AT3G26115.1); Has 2814 Blast hits to 2813 proteins in 938 species: Archae - 31; Bacteria - 1992; Metazoa - 30; Fungi - 102; Plants - 101; Viruses - 0; Other Eukaryotes - 558 (source: NCBI BLink). & (reliability: 922.0) & (original description: no original description)","protein_coding" "Kfl00012_0020","kfl00012_0020_v1.1","Klebsormidium nitens","(at3g21430 : 187.0) ALWAYS EARLY 3 (ALY3); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DIRP ;Myb-like DNA-binding domain (TAIR:AT3G05380.4); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 374.0) & (original description: no original description)","protein_coding" "Kfl00012_0270","kfl00012_0270_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00013_0140","kfl00013_0140_v1.1","Klebsormidium nitens","(at5g13200 : 87.8) GRAM domain family protein; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain family protein (TAIR:AT2G22475.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 175.6) & (original description: no original description)","protein_coding" "Kfl00013_0200","kfl00013_0200_v1.1","Klebsormidium nitens","(at4g11980 : 256.0) nudix hydrolase homolog 14 (NUDX14); FUNCTIONS IN: hydrolase activity, ADP-sugar diphosphatase activity, ADP-ribose pyrophosphohydrolase activity, ADP-glucose pyrophosphohydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase domain (InterPro:IPR000086); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 512.0) & (original description: no original description)","protein_coding" "Kfl00013_0230","kfl00013_0230_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00013_0540","kfl00013_0540_v1.1","Klebsormidium nitens","(at1g16970 : 448.0) Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity.; KU70 homolog (KU70); FUNCTIONS IN: double-stranded DNA binding, protein binding; INVOLVED IN: DNA repair, response to heat, telomere maintenance; LOCATED IN: nucleus, DNA-dependent protein kinase-DNA ligase 4 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ku70/Ku80, N-terminal alpha/beta (InterPro:IPR005161), DNA-binding SAP (InterPro:IPR003034), DNA helicase, ATP-dependent, Ku type (InterPro:IPR006164), Spen Paralogue and Orthologue SPOC, C-terminal-like (InterPro:IPR016194), Ku70/Ku80 C-terminal arm (InterPro:IPR005160), DNA helicase, ATP-dependent, Ku70 subunit (InterPro:IPR006165); Has 475 Blast hits to 466 proteins in 181 species: Archae - 0; Bacteria - 6; Metazoa - 182; Fungi - 177; Plants - 52; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). & (reliability: 896.0) & (original description: no original description)","protein_coding" "Kfl00016_0440","kfl00016_0440_v1.1","Klebsormidium nitens","(at4g21710 : 1847.0) Encodes the unique second-largest subunit of DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB2 and a homolog of the E. coli RNA polymerase beta subunit.; NRPB2; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, subunit 2, domain 6 (InterPro:IPR007120), RNA polymerase Rpb2, domain 7 (InterPro:IPR007641), RNA polymerase, beta subunit, protrusion (InterPro:IPR007644), RNA polymerase Rpb2, domain 3 (InterPro:IPR007645), DNA-directed RNA polymerase, subunit 2 (InterPro:IPR015712), RNA polymerase Rpb2, domain 2 (InterPro:IPR007642), RNA polymerase Rpb2, domain 4 (InterPro:IPR007646), RNA polymerase, beta subunit, conserved site (InterPro:IPR007121), RNA polymerase Rpb2, domain 5 (InterPro:IPR007647); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C2 (TAIR:AT5G45140.1); Has 37546 Blast hits to 27868 proteins in 9192 species: Archae - 496; Bacteria - 17572; Metazoa - 623; Fungi - 7193; Plants - 3397; Viruses - 232; Other Eukaryotes - 8033 (source: NCBI BLink). & (q9mus5|rpob_mesvi : 174.0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta) (RNA polymerase subunit beta) - Mesostigma viride & (reliability: 3694.0) & (original description: no original description)","protein_coding" "Kfl00017_0310","kfl00017_0310_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00017_0380","kfl00017_0380_v1.1","Klebsormidium nitens","(at3g51680 : 105.0) NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon, root; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G26770.1); Has 119773 Blast hits to 119555 proteins in 3701 species: Archae - 1000; Bacteria - 77051; Metazoa - 6334; Fungi - 6742; Plants - 2947; Viruses - 5; Other Eukaryotes - 25694 (source: NCBI BLink). & (q75kh3|grdh_orysa : 99.4) Glucose and ribitol dehydrogenase homolog (EC 1.1.1.-) - Oryza sativa (Rice) & (reliability: 210.0) & (original description: no original description)","protein_coding" "Kfl00017_0510","kfl00017_0510_v1.1","Klebsormidium nitens","(at2g38970 : 201.0) Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT3G54780.1); Has 4418 Blast hits to 4397 proteins in 764 species: Archae - 94; Bacteria - 1613; Metazoa - 1251; Fungi - 170; Plants - 535; Viruses - 5; Other Eukaryotes - 750 (source: NCBI BLink). & (reliability: 402.0) & (original description: no original description)","protein_coding" "Kfl00018_0080","kfl00018_0080_v1.1","Klebsormidium nitens","(at3g44100 : 102.0) MD-2-related lipid recognition domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, vacuole, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: MD-2-related lipid-recognition (InterPro:IPR003172); BEST Arabidopsis thaliana protein match is: MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (TAIR:AT3G11780.1); Has 286 Blast hits to 286 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 123; Plants - 124; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description)","protein_coding" "Kfl00018_0450","kfl00018_0450_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00019_0340","kfl00019_0340_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00019_0380","kfl00019_0380_v1.1","Klebsormidium nitens","(at2g02590 : 162.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative small multi-drug export (InterPro:IPR009577); Has 405 Blast hits to 405 proteins in 185 species: Archae - 65; Bacteria - 295; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). & (reliability: 324.0) & (original description: no original description)","protein_coding" "Kfl00020_0330","kfl00020_0330_v1.1","Klebsormidium nitens","(at5g54440 : 445.0) Encodes a putative TRAPPII tethering factor required for cell plate assembly during cytokinesis.; CLUB (CLUB); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3758 (InterPro:IPR022233); Has 362 Blast hits to 266 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 118; Plants - 63; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). & (reliability: 890.0) & (original description: no original description)","protein_coding" "Kfl00024_0030","kfl00024_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00024_g47","kfl00024_g47_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00025_0430","kfl00025_0430_v1.1","Klebsormidium nitens","(at1g20080 : 256.0) SYTB; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 region (InterPro:IPR020477), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: synaptotagmin A (TAIR:AT2G20990.1); Has 7272 Blast hits to 5651 proteins in 270 species: Archae - 0; Bacteria - 0; Metazoa - 4705; Fungi - 871; Plants - 1207; Viruses - 0; Other Eukaryotes - 489 (source: NCBI BLink). & (reliability: 466.0) & (original description: no original description)","protein_coding" "Kfl00027_0330","kfl00027_0330_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00028_0060","kfl00028_0060_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00029_0340","kfl00029_0340_v1.1","Klebsormidium nitens","(at1g58025 : 91.7) DNA-binding bromodomain-containing protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: nuclear protein X1 (TAIR:AT5G63320.1). & (reliability: 183.4) & (original description: no original description)","protein_coding" "Kfl00029_0450","kfl00029_0450_v1.1","Klebsormidium nitens","(at3g26085 : 136.0) CAAX amino terminal protease family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: proteolysis; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Abortive infection protein (InterPro:IPR003675). & (reliability: 272.0) & (original description: no original description)","protein_coding" "Kfl00030_0060","kfl00030_0060_v1.1","Klebsormidium nitens","(at1g50380 : 701.0) Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G69020.1); Has 7641 Blast hits to 7556 proteins in 1214 species: Archae - 80; Bacteria - 3203; Metazoa - 306; Fungi - 27; Plants - 212; Viruses - 0; Other Eukaryotes - 3813 (source: NCBI BLink). & (reliability: 1402.0) & (original description: no original description)","protein_coding" "Kfl00031_0380","kfl00031_0380_v1.1","Klebsormidium nitens","(at2g43250 : 101.0) unknown protein; Has 32 Blast hits to 32 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 202.0) & (original description: no original description)","protein_coding" "Kfl00035_0180","kfl00035_0180_v1.1","Klebsormidium nitens","(at1g56440 : 86.3) Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: translocon at the outer membrane of chloroplasts 64-III (TAIR:AT3G17970.1). & (reliability: 171.0) & (original description: no original description)","protein_coding" "Kfl00039_g31","kfl00039_g31_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00041_0210","kfl00041_0210_v1.1","Klebsormidium nitens","(at4g18810 : 602.0) NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NADH:ubiquinone oxidoreductase intermediate-associated protein 30 (InterPro:IPR013857), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: high chlorophyll fluorescence phenotype 173 (TAIR:AT1G16720.1). & (reliability: 1204.0) & (original description: no original description)","protein_coding" "Kfl00041_0270","kfl00041_0270_v1.1","Klebsormidium nitens","(at1g11950 : 252.0) Transcription factor jumonji (jmjC) domain-containing protein; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G62310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 482.0) & (original description: no original description)","protein_coding" "Kfl00044_0210","kfl00044_0210_v1.1","Klebsormidium nitens","(at2g28260 : 392.0) member of Cyclic nucleotide gated channel family; cyclic nucleotide-gated channel 15 (CNGC15); FUNCTIONS IN: cyclic nucleotide binding, calmodulin binding, cation channel activity; INVOLVED IN: potassium ion transport, ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 14 (TAIR:AT2G24610.1); Has 3177 Blast hits to 3099 proteins in 290 species: Archae - 0; Bacteria - 161; Metazoa - 1483; Fungi - 19; Plants - 962; Viruses - 0; Other Eukaryotes - 552 (source: NCBI BLink). & (reliability: 784.0) & (original description: no original description)","protein_coding" "Kfl00047_0010","kfl00047_0010_v1.1","Klebsormidium nitens","(at3g33530 : 594.0) Transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT2G26610.1). & (reliability: 1188.0) & (original description: no original description)","protein_coding" "Kfl00051_0290","kfl00051_0290_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00052_0360","kfl00052_0360_v1.1","Klebsormidium nitens","(at4g15180 : 131.0) SET domain protein 2 (SDG2); EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (TAIR:AT1G77300.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 262.0) & (original description: no original description)","protein_coding" "Kfl00052_0390","kfl00052_0390_v1.1","Klebsormidium nitens","(at3g09850 : 94.7) D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); BEST Arabidopsis thaliana protein match is: GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain (TAIR:AT1G17070.1); Has 4043 Blast hits to 2784 proteins in 353 species: Archae - 19; Bacteria - 864; Metazoa - 1783; Fungi - 478; Plants - 347; Viruses - 9; Other Eukaryotes - 543 (source: NCBI BLink). & (reliability: 189.4) & (original description: no original description)","protein_coding" "Kfl00054_0040","kfl00054_0040_v1.1","Klebsormidium nitens","(at1g26550 : 199.0) FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: isomerase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, PpiC-type (InterPro:IPR000297); BEST Arabidopsis thaliana protein match is: peptidylprolyl cis/trans isomerase, NIMA-interacting 1 (TAIR:AT2G18040.1); Has 6979 Blast hits to 6709 proteins in 1619 species: Archae - 14; Bacteria - 5328; Metazoa - 276; Fungi - 185; Plants - 213; Viruses - 0; Other Eukaryotes - 963 (source: NCBI BLink). & (reliability: 398.0) & (original description: no original description)","protein_coding" "Kfl00055_0110","kfl00055_0110_v1.1","Klebsormidium nitens","(at4g02480 : 607.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G02890.1); Has 36961 Blast hits to 32268 proteins in 3150 species: Archae - 1594; Bacteria - 13825; Metazoa - 4872; Fungi - 3636; Plants - 2887; Viruses - 35; Other Eukaryotes - 10112 (source: NCBI BLink). & (q96372|cdc48_capan : 188.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 1214.0) & (original description: no original description)","protein_coding" "Kfl00055_0280","kfl00055_0280_v1.1","Klebsormidium nitens","(at5g24740 : 506.0) EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: calcium-dependent lipid-binding family protein (TAIR:AT1G48090.1). & (reliability: 1012.0) & (original description: no original description)","protein_coding" "Kfl00055_0370","kfl00055_0370_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00058_0070","kfl00058_0070_v1.1","Klebsormidium nitens","(at1g48950 : 195.0) C3HC zinc finger-like ; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC-like (InterPro:IPR012935); BEST Arabidopsis thaliana protein match is: IAP-like protein 1 (TAIR:AT1G17210.1); Has 249 Blast hits to 238 proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa - 75; Fungi - 80; Plants - 75; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). & (reliability: 390.0) & (original description: no original description)","protein_coding" "Kfl00061_0100","kfl00061_0100_v1.1","Klebsormidium nitens","(at5g17270 : 343.0) Protein prenylyltransferase superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Protein prenylyltransferase superfamily protein (TAIR:AT5G37130.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 686.0) & (original description: no original description)","protein_coding" "Kfl00067_0040","kfl00067_0040_v1.1","Klebsormidium nitens","(at5g62810 : 85.5) mutant has a defect in the intracellular transport of thiolase from the cytosol to glyoxysomes (formerly known as ped2); peroxin 14 (PEX14); FUNCTIONS IN: protein transporter activity, protein binding; INVOLVED IN: peroxisome organization, protein targeting to peroxisome; LOCATED IN: cytosol, peroxisome, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peroxisome membrane anchor protein Pex14p, N-terminal (InterPro:IPR006785); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT5G62800.1); Has 366 Blast hits to 354 proteins in 137 species: Archae - 0; Bacteria - 2; Metazoa - 94; Fungi - 149; Plants - 89; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). & (reliability: 171.0) & (original description: no original description)","protein_coding" "Kfl00067_0110","kfl00067_0110_v1.1","Klebsormidium nitens","(at1g49670 : 475.0) molecular function has not been defined. Was shown involved in oxidative stress tolerance.; NQR; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: response to oxidative stress, metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198), GroES-like (InterPro:IPR011032), Polyketide synthase, enoylreductase (InterPro:IPR020843), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Quinone oxidoreductase/zeta-crystallin, conserved site (InterPro:IPR002364), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Zinc-binding dehydrogenase family protein (TAIR:AT5G37980.1). & (q93x67|fabg2_brana : 92.0) 3-oxoacyl-[acyl-carrier-protein] reductase 2, chloroplast precursor (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase 2) - Brassica napus (Rape) & (reliability: 950.0) & (original description: no original description)","protein_coding" "Kfl00067_0150","kfl00067_0150_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00068_0110","kfl00068_0110_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00068_0290","kfl00068_0290_v1.1","Klebsormidium nitens","(at4g00060 : 184.0) maternal effect embryo arrest 44 (MEE44); FUNCTIONS IN: nucleotidyltransferase activity; INVOLVED IN: embryo development ending in seed dormancy; CONTAINS InterPro DOMAIN/s: Nucleotidyl transferase domain (InterPro:IPR002934), PAP/25A-associated (InterPro:IPR002058); BEST Arabidopsis thaliana protein match is: Nucleotidyltransferase family protein (TAIR:AT5G53770.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 368.0) & (original description: no original description)","protein_coding" "Kfl00069_0240","kfl00069_0240_v1.1","Klebsormidium nitens","(at3g02680 : 157.0) DNA repair and meiotic recombination protein, component of MRE11 complex with RAD50 and MRE11; nijmegen breakage syndrome 1 (NBS1); CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); Has 164 Blast hits to 161 proteins in 63 species: Archae - 0; Bacteria - 2; Metazoa - 112; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). & (reliability: 314.0) & (original description: no original description)","protein_coding" "Kfl00071_0250","kfl00071_0250_v1.1","Klebsormidium nitens","(at1g05180 : 535.0) Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves.; AUXIN RESISTANT 1 (AXR1); CONTAINS InterPro DOMAIN/s: Molybdenum cofactor biosynthesis, MoeB (InterPro:IPR009036), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: AXR1-like (TAIR:AT2G32410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1060.0) & (original description: no original description)","protein_coding" "Kfl00076_0330","kfl00076_0330_v1.1","Klebsormidium nitens","(at4g24270 : 379.0) A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.; EMBRYO DEFECTIVE 140 (EMB140); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lsm interaction (InterPro:IPR008669), RNA-processing protein, HAT helix (InterPro:IPR003107), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G45990.1); Has 6638 Blast hits to 6081 proteins in 560 species: Archae - 0; Bacteria - 845; Metazoa - 2454; Fungi - 1660; Plants - 947; Viruses - 0; Other Eukaryotes - 732 (source: NCBI BLink). & (reliability: 758.0) & (original description: no original description)","protein_coding" "Kfl00081_0320","kfl00081_0320_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00082_0190","kfl00082_0190_v1.1","Klebsormidium nitens","(at3g04740 : 266.0) encodes a protein with similarities to subunits of the Mediator complex, required for RNA polymerase II recruitment at target promoters in response to specific activators. Lines carrying loss of function mutations in the gene have reduced cell numbers in aerial organs. On the other hand, lines overexpressing the gene have increased number of small cells in clusters, suggesting cell division is more unsynchronized in the overexpressors.; STRUWWELPETER (SWP); FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: positive regulation of transcription, positive regulation of cell proliferation; LOCATED IN: mediator complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med14 (InterPro:IPR013947); Has 940 Blast hits to 375 proteins in 163 species: Archae - 0; Bacteria - 61; Metazoa - 117; Fungi - 104; Plants - 74; Viruses - 0; Other Eukaryotes - 584 (source: NCBI BLink). & (reliability: 532.0) & (original description: no original description)","protein_coding" "Kfl00085_0310","kfl00085_0310_v1.1","Klebsormidium nitens","(at5g51230 : 92.4) Polycomb group protein with zinc finger domain involved in negative regulation of reproductive development. Forms a complex with FIE, CLF, and MSI1. This complex modulates the expression of target genes including AG, PI and AP3.; EMBRYONIC FLOWER 2 (EMF2); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Polycomb protein, VEFS-Box (InterPro:IPR019135); BEST Arabidopsis thaliana protein match is: VEFS-Box of polycomb protein (TAIR:AT4G16845.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 184.8) & (original description: no original description)","protein_coding" "Kfl00086_0350","kfl00086_0350_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00088_g15","kfl00088_g15_v1.1","Klebsormidium nitens","(at3g04530 : 84.7) Encodes a second Arabidopsis phosphoenolpyruvate carboxylase kinase gene product with a different expression pattern from PPCK1. Expression of the gene is upregulated by exposure of the plant to light.; phosphoenolpyruvate carboxylase kinase 2 (PPCK2); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: phosphoenolpyruvate carboxylase kinase 1 (TAIR:AT1G08650.1); Has 120539 Blast hits to 118552 proteins in 3545 species: Archae - 165; Bacteria - 14785; Metazoa - 43114; Fungi - 13204; Plants - 27915; Viruses - 518; Other Eukaryotes - 20838 (source: NCBI BLink). & (reliability: 163.2) & (original description: no original description)","protein_coding" "Kfl00089_0050","kfl00089_0050_v1.1","Klebsormidium nitens","(at3g16630 : 481.0) Kinesin-13A localized to entire Golgi stacks. Involved in trichome development.; KINESIN-13A; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: trichome morphogenesis; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: ATP binding microtubule motor family protein (TAIR:AT3G16060.1); Has 9814 Blast hits to 9502 proteins in 306 species: Archae - 4; Bacteria - 2; Metazoa - 4282; Fungi - 1345; Plants - 1799; Viruses - 0; Other Eukaryotes - 2382 (source: NCBI BLink). & (o23826|k125_tobac : 167.0) 125 kDa kinesin-related protein - Nicotiana tabacum (Common tobacco) & (reliability: 962.0) & (original description: no original description)","protein_coding" "Kfl00090_0090","kfl00090_0090_v1.1","Klebsormidium nitens","(at3g54610 : 486.0) Encodes a histone acetyltransferase that is plays a role in the determination of the embryonic root-shoot axis. It is also required to regulate the floral meristem activity by modulating the extent of expression of WUS and AG. In other eukaryotes, this protein is recruited to specific promoters by DNA binding transcription factors and is thought to promote transcription by acetylating the N-terminal tail of histone H3. The enzyme has indeed been shown to catalyse primarily the acetylation of H3 histone with only traces of H4 and H2A/B being acetylated. Non-acetylated H3 peptide or an H3 peptide that had been previously acetylated on K9 both serve as excellent substrates for HAG1-catalyzed acetylation. However, prior acetylation of H3 lysine 14 blocks radioactive acetylation of the peptide by HAG1. HAG1 is specific for histone H3 lysine 14.; histone acetyltransferase of the GNAT family 1 (HAG1); FUNCTIONS IN: histone acetyltransferase activity, DNA binding, H3 histone acetyltransferase activity; INVOLVED IN: flower development, histone acetylation, response to light stimulus, positive regulation of transcription, root morphogenesis; LOCATED IN: histone acetyltransferase complex, nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Bromodomain, conserved site (InterPro:IPR018359), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: nuclear protein X1 (TAIR:AT5G63320.1); Has 13698 Blast hits to 5805 proteins in 367 species: Archae - 4; Bacteria - 1437; Metazoa - 4852; Fungi - 1484; Plants - 516; Viruses - 1; Other Eukaryotes - 5404 (source: NCBI BLink). & (reliability: 972.0) & (original description: no original description)","protein_coding" "Kfl00092_0190","kfl00092_0190_v1.1","Klebsormidium nitens","(at2g39910 : 164.0) ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF2454 (InterPro:IPR018870); Has 85 Blast hits to 84 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 42; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 328.0) & (original description: no original description)","protein_coding" "Kfl00093_0160","kfl00093_0160_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00093_0170","kfl00093_0170_v1.1","Klebsormidium nitens","(at1g15220 : 126.0) Encodes a protein with oxidoreductase activity present in the inner membrane of mitochondria. CCMH is postulated to play a central role in mitochondrial cytochrome c maturation, probably as part of a heme lyase complex that also holds activity of reducing apocytochrome c. CCMH interacts with apocytochrome AtCYTc-a and is shown to be present in a 500 kDa-complex along with CcmFN2.; CCMH; CONTAINS InterPro DOMAIN/s: Cytochrome C biogenesis protein CcmH (InterPro:IPR005616); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 252.0) & (original description: no original description)","protein_coding" "Kfl00097_0370","kfl00097_0370_v1.1","Klebsormidium nitens","(at5g07740 : 95.1) actin binding; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; EXPRESSED IN: shoot apex, stem; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Tensin phosphatase, C2 domain (InterPro:IPR014020), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: Actin-binding FH2 protein (TAIR:AT5G07770.1). & (reliability: 190.2) & (original description: no original description)","protein_coding" "Kfl00102_0100","kfl00102_0100_v1.1","Klebsormidium nitens","(at1g20960 : 2806.0) embryo defective 1507 (emb1507); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT2G42270.1). & (reliability: 5612.0) & (original description: no original description)","protein_coding" "Kfl00102_0230","kfl00102_0230_v1.1","Klebsormidium nitens","(at1g35530 : 555.0) DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: in 6 functions; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36020.1). & (reliability: 1110.0) & (original description: no original description)","protein_coding" "Kfl00119_0020","kfl00119_0020_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00119_0100","kfl00119_0100_v1.1","Klebsormidium nitens","(at3g26115 : 213.0) Pyridoxal-5'-phosphate-dependent enzyme family protein; FUNCTIONS IN: pyridoxal phosphate binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent enzyme, beta subunit (InterPro:IPR001926); BEST Arabidopsis thaliana protein match is: D-cysteine desulfhydrase (TAIR:AT1G48420.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 426.0) & (original description: no original description)","protein_coding" "Kfl00120_0100","kfl00120_0100_v1.1","Klebsormidium nitens","(at1g05460 : 240.0) Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing.; SILENCING DEFECTIVE (SDE3); FUNCTIONS IN: RNA helicase activity; INVOLVED IN: virus induced gene silencing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DNA helicase, UvrD/REP type (InterPro:IPR000212); BEST Arabidopsis thaliana protein match is: RNA helicase, putative (TAIR:AT5G47010.1); Has 8827 Blast hits to 7137 proteins in 1206 species: Archae - 219; Bacteria - 2402; Metazoa - 1784; Fungi - 1431; Plants - 666; Viruses - 219; Other Eukaryotes - 2106 (source: NCBI BLink). & (reliability: 480.0) & (original description: no original description)","protein_coding" "Kfl00121_0110","kfl00121_0110_v1.1","Klebsormidium nitens","(at1g67070 : 393.0) Encodes a protein with phosphomannose isomerase activity that is involved in synthesis of ascorbic acid. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.; DARK INDUCIBLE 9 (DIN9); CONTAINS InterPro DOMAIN/s: Mannose-6-phosphate isomerase (InterPro:IPR016305), Cupin, RmlC-type (InterPro:IPR011051), Mannose-6-phosphate isomerase, type I (InterPro:IPR001250), RmlC-like jelly roll fold (InterPro:IPR014710), Phosphomannose isomerase, type I, conserved site (InterPro:IPR018050); BEST Arabidopsis thaliana protein match is: Mannose-6-phosphate isomerase, type I (TAIR:AT3G02570.1); Has 2340 Blast hits to 2321 proteins in 789 species: Archae - 2; Bacteria - 1171; Metazoa - 570; Fungi - 215; Plants - 90; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink). & (reliability: 786.0) & (original description: no original description)","protein_coding" "Kfl00122_0050","kfl00122_0050_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00123_0100","kfl00123_0100_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00125_0050","kfl00125_0050_v1.1","Klebsormidium nitens","(at3g57880 : 620.0) Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: tryptophan biosynthetic process; LOCATED IN: endoplasmic reticulum, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phosphoribosyltransferase C-terminal (InterPro:IPR013583), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (TAIR:AT1G51570.1); Has 5845 Blast hits to 4237 proteins in 266 species: Archae - 0; Bacteria - 0; Metazoa - 3557; Fungi - 274; Plants - 1573; Viruses - 0; Other Eukaryotes - 441 (source: NCBI BLink). & (reliability: 1174.0) & (original description: no original description)","protein_coding" "Kfl00127_0110","kfl00127_0110_v1.1","Klebsormidium nitens","(at3g61740 : 120.0) ATX3; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Post-SET domain (InterPro:IPR003616), PWWP (InterPro:IPR000313), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), SAND domain (InterPro:IPR000770), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: SET domain group 29 (TAIR:AT5G53430.1); Has 7727 Blast hits to 7398 proteins in 492 species: Archae - 2; Bacteria - 431; Metazoa - 3516; Fungi - 841; Plants - 1504; Viruses - 0; Other Eukaryotes - 1433 (source: NCBI BLink). & (reliability: 240.0) & (original description: no original description)","protein_coding" "Kfl00127_0150","kfl00127_0150_v1.1","Klebsormidium nitens","(at5g05560 : 589.0) Arabidopsis thaliana E3 ubiquitin ligase; EMBRYO DEFECTIVE 2771 (EMB2771); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1178.0) & (original description: no original description)","protein_coding" "Kfl00133_0070","kfl00133_0070_v1.1","Klebsormidium nitens","(at2g48060 : 875.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). & (reliability: 1750.0) & (original description: no original description)","protein_coding" "Kfl00142_0130","kfl00142_0130_v1.1","Klebsormidium nitens","(at1g17450 : 100.0) B-block binding subunit of TFIIIC; FUNCTIONS IN: molecular_function unknown; CONTAINS InterPro DOMAIN/s: B-block binding subunit of TFIIIC (InterPro:IPR007309); BEST Arabidopsis thaliana protein match is: B-block binding subunit of TFIIIC (TAIR:AT1G59453.1). & (reliability: 200.0) & (original description: no original description)","protein_coding" "Kfl00146_0200","kfl00146_0200_v1.1","Klebsormidium nitens","(at5g18420 : 274.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2363 (InterPro:IPR019312); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 548.0) & (original description: no original description)","protein_coding" "Kfl00150_0250","kfl00150_0250_v1.1","Klebsormidium nitens","(at1g31170 : 122.0) encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress; sulfiredoxin (SRX); CONTAINS InterPro DOMAIN/s: ParB-like nuclease (InterPro:IPR003115). & (reliability: 244.0) & (original description: no original description)","protein_coding" "Kfl00156_0250","kfl00156_0250_v1.1","Klebsormidium nitens","(at3g05040 : 265.0) Encodes member of importin/exportin family. Involved in timing of shoot maturation. Involved in miRNA transport. Mutants flower early and have small, curled leaves and reduced abundance of certain miRNA species.; HASTY (HST); CONTAINS InterPro DOMAIN/s: Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-type fold (InterPro:IPR016024); Has 520 Blast hits to 417 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 205; Fungi - 183; Plants - 102; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). & (reliability: 530.0) & (original description: no original description)","protein_coding" "Kfl00160_0100","kfl00160_0100_v1.1","Klebsormidium nitens","(at3g55160 : 416.0) unknown protein; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2428, death-receptor-like (InterPro:IPR019442); Has 357 Blast hits to 330 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 118; Plants - 50; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). & (reliability: 832.0) & (original description: no original description)","protein_coding" "Kfl00166_0050","kfl00166_0050_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00166_0240","kfl00166_0240_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00173_0230","kfl00173_0230_v1.1","Klebsormidium nitens","(at4g24490 : 258.0) RAB geranylgeranyl transferase alpha subunit 1; FUNCTIONS IN: protein prenyltransferase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase alpha subunit 2 (TAIR:AT5G41820.1); Has 3834 Blast hits to 3112 proteins in 396 species: Archae - 22; Bacteria - 493; Metazoa - 1923; Fungi - 431; Plants - 375; Viruses - 2; Other Eukaryotes - 588 (source: NCBI BLink). & (reliability: 516.0) & (original description: no original description)","protein_coding" "Kfl00177_0010","kfl00177_0010_v1.1","Klebsormidium nitens","(at3g09150 : 220.0) Required for biosynthesis of the tetrapyrrole phytochrome chromophore phytochromobilin. Encodes phytochromobilin synthase, a ferredoxin-dependent biliverdin reductase. It is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast.; ELONGATED HYPOCOTYL 2 (HY2); CONTAINS InterPro DOMAIN/s: Ferredoxin-dependent bilin reductase (InterPro:IPR009249); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 440.0) & (original description: no original description)","protein_coding" "Kfl00177_0020","kfl00177_0020_v1.1","Klebsormidium nitens","(at3g52780 : 461.0) PAP20; FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 22 (TAIR:AT3G52820.1); Has 2133 Blast hits to 2115 proteins in 453 species: Archae - 1; Bacteria - 782; Metazoa - 195; Fungi - 75; Plants - 759; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink). & (q09131|ppaf_soybn : 299.0) Purple acid phosphatase precursor (EC 3.1.3.2) (Manganese(II) purple acid phosphatase) - Glycine max (Soybean) & (reliability: 922.0) & (original description: no original description)","protein_coding" "Kfl00178_0020","kfl00178_0020_v1.1","Klebsormidium nitens"," (original description: no original description)","protein_coding" "Kfl00178_0090","kfl00178_0090_v1.1","Klebsormidium nitens","(at1g54390 : 182.0) ING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.; INHIBITOR OF GROWTH 2 (ING2); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G24010.1); Has 1316 Blast hits to 1312 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 731; Fungi - 422; Plants - 94; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). & (reliability: 364.0) & (original description: no original description)","protein_coding" "Kfl00192_0160","kfl00192_0160_v1.1","Klebsormidium nitens","(at4g36080 : 4007.0) phosphotransferases, alcohol group as acceptor;binding;inositol or phosphatidylinositol kinases; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403), PIK-related kinase, FAT (InterPro:IPR003151), PIK-related kinase (InterPro:IPR014009), Armadillo-type fold (InterPro:IPR016024), PIK-related kinase, FATC (InterPro:IPR003152), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (TAIR:AT2G17930.1). & (q5z987|atr_orysa : 83.6) Serine/threonine-protein kinase ATR (EC 2.7.11.1) - Oryza sativa (Rice) & (reliability: 8014.0) & (original description: no original description)","protein_coding" "Kfl00194_0100","kfl00194_0100_v1.1","Klebsormidium nitens","(at5g16210 : 619.0) HEAT repeat-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), LisH dimerisation motif (InterPro:IPR006594), Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1238.0) & (original description: no original description)","protein_coding" "Kfl00195_0120","kfl00195_0120_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00197_0045","kfl00197_0045_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00197_0090","kfl00197_0090_v1.1","Klebsormidium nitens","(at5g11430 : 101.0) SPOC domain / Transcription elongation factor S-II protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Spen paralogue and orthologue SPOC, C-terminal (InterPro:IPR012921), Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription elongation factor S-II, central domain (InterPro:IPR003618); BEST Arabidopsis thaliana protein match is: SPOC domain / Transcription elongation factor S-II protein (TAIR:AT5G25520.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 202.0) & (original description: no original description)","protein_coding" "Kfl00198_0230","kfl00198_0230_v1.1","Klebsormidium nitens","(at2g17790 : 962.0) Encodes a protein with similarity to yeast VPS35 which encodes a component of the retromer involved in retrograde endosomal transport. Mutants partially suppress the loss of VTI11 function in Arabidopsis and restores gravitropism in the double mutant.; VPS35 homolog A (VPS35A); CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 35 (InterPro:IPR005378); BEST Arabidopsis thaliana protein match is: VPS35 homolog B (TAIR:AT1G75850.1); Has 618 Blast hits to 509 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 194; Fungi - 224; Plants - 73; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). & (reliability: 1924.0) & (original description: no original description)","protein_coding" "Kfl00204_0160","kfl00204_0160_v1.1","Klebsormidium nitens","(at1g50030 : 153.0) Related to TOR proteins from yeast and mammals, regulators of cell growth in response to nutrient availability. TOR proteins belong to the family of phosphatidylinositol 3-kinase and are targets of the antiproliferative drug rapamycin. AtTOR binds the yeast FKBP12 protein in the presence of Rapamycin, is involved in embryogenesis and is expressed in embryos, endosperm and meristems.; target of rapamycin (TOR); FUNCTIONS IN: protein binding, 1-phosphatidylinositol-3-kinase activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403), FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding (InterPro:IPR009076), Armadillo-like helical (InterPro:IPR011989), Protein kinase-like domain (InterPro:IPR011009), PIK-related kinase, FAT (InterPro:IPR003151), PIK-related kinase (InterPro:IPR014009), Armadillo-type fold (InterPro:IPR016024), Phosphatidylinositol 3/4-kinase, conserved site (InterPro:IPR018936), PIK-related kinase, FATC (InterPro:IPR003152); BEST Arabidopsis thaliana protein match is: Ataxia telangiectasia-mutated and RAD3-related (TAIR:AT5G40820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q5z987|atr_orysa : 118.0) Serine/threonine-protein kinase ATR (EC 2.7.11.1) - Oryza sativa (Rice) & (reliability: 306.0) & (original description: no original description)","protein_coding" "Kfl00205_0130","kfl00205_0130_v1.1","Klebsormidium nitens","(at4g29890 : 287.0) choline monooxygenase, putative (CMO-like); FUNCTIONS IN: electron carrier activity, oxidoreductase activity, iron ion binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: oxidation reduction, cellular aromatic compound metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Aromatic-ring-hydroxylating dioxygenase, alpha subunit (InterPro:IPR001663); Has 7402 Blast hits to 7400 proteins in 1015 species: Archae - 31; Bacteria - 4374; Metazoa - 10; Fungi - 153; Plants - 102; Viruses - 0; Other Eukaryotes - 2732 (source: NCBI BLink). & (o22553|chmo_betvu : 261.0) Choline monooxygenase, chloroplast precursor (EC 1.14.15.7) - Beta vulgaris (Sugar beet) & (reliability: 574.0) & (original description: no original description)","protein_coding" "Kfl00205_0140","kfl00205_0140_v1.1","Klebsormidium nitens","(at4g37470 : 209.0) alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G03990.1); Has 8593 Blast hits to 8591 proteins in 1653 species: Archae - 86; Bacteria - 6869; Metazoa - 120; Fungi - 103; Plants - 302; Viruses - 19; Other Eukaryotes - 1094 (source: NCBI BLink). & (reliability: 418.0) & (original description: no original description)","protein_coding" "Kfl00206_0090","kfl00206_0090_v1.1","Klebsormidium nitens","(at4g16144 : 320.0) Encodes AMSH3, a deubiquitinating enzyme that hydrolyzes K48- and K63-linked ubiquitin chains in vitro. Required for intracellular trafficking and vacuole biogenesis.; associated molecule with the SH3 domain of STAM 3 (AMSH3); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: associated molecule with the SH3 domain of STAM 1 (TAIR:AT1G48790.1); Has 901 Blast hits to 707 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 373; Fungi - 228; Plants - 224; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). & (reliability: 640.0) & (original description: no original description)","protein_coding" "Kfl00209_0070","kfl00209_0070_v1.1","Klebsormidium nitens","(at4g34490 : 401.0) CYCLASE ASSOCIATED PROTEIN; cyclase associated protein 1 (CAP1); CONTAINS InterPro DOMAIN/s: Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal (InterPro:IPR016098), CAP, conserved site (InterPro:IPR018106), Adenylate cyclase-associated CAP (InterPro:IPR001837), CARP motif (InterPro:IPR006599), Adenylate cyclase-associated CAP, N-terminal (InterPro:IPR013992), C-CAP/cofactor C-like domain (InterPro:IPR017901), Adenylate cyclase-associated CAP, C-terminal (InterPro:IPR013912); Has 618 Blast hits to 612 proteins in 211 species: Archae - 0; Bacteria - 2; Metazoa - 296; Fungi - 160; Plants - 51; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink). & (reliability: 802.0) & (original description: no original description)","protein_coding" "Kfl00209_0170","kfl00209_0170_v1.1","Klebsormidium nitens","(at1g55870 : 99.0) Encodes a poly(A)-specific ribonuclease, AtPARN. Expression of AtPARN is upregulated by ABA or stress treatment. Mutant is hypersensitivity to salicylic acid as well as ABA.; ABA-HYPERSENSITIVE GERMINATION 2 (AHG2); FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: response to abscisic acid stimulus, RNA modification, response to stress, response to salicylic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G25430.1); Has 352 Blast hits to 351 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 63; Plants - 63; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink). & (reliability: 198.0) & (original description: no original description)","protein_coding" "Kfl00210_0140","kfl00210_0140_v1.1","Klebsormidium nitens","(at3g12810 : 1028.0) Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6).; PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (PIE1); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: SWI/SNF complex, cell wall, chromatin remodeling complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: HSA (InterPro:IPR006562), HAS subgroup (InterPro:IPR013999), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), SNF2-related (InterPro:IPR000330), MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: INO80 ortholog (TAIR:AT3G57300.1); Has 42311 Blast hits to 26312 proteins in 2357 species: Archae - 246; Bacteria - 10217; Metazoa - 11172; Fungi - 7336; Plants - 2916; Viruses - 500; Other Eukaryotes - 9924 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 293.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 2056.0) & (original description: no original description)","protein_coding" "Kfl00211_0040","kfl00211_0040_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00211_g6","kfl00211_g6_v1.1","Klebsormidium nitens","(at3g33530 : 95.5) Transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: Transducin family protein / WD-40 repeat family protein (TAIR:AT2G26610.1). & (reliability: 191.0) & (original description: no original description)","protein_coding" "Kfl00221_0020","kfl00221_0020_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00229_0050","kfl00229_0050_v1.1","Klebsormidium nitens","(at5g10470 : 403.0) Kinesin that binds cyclin-dependent kinase CDKA;1 as homodimer or as heterodimer with KCA2. Demarcates the division site in plant cells.; kinesin like protein for actin based chloroplast movement 1 (KAC1); FUNCTIONS IN: microtubule binding, protein binding, microtubule motor activity; INVOLVED IN: preprophase band assembly, chloroplast avoidance movement, chloroplast accumulation movement, cytokinesis; LOCATED IN: cytosol, plasma membrane, membrane, cell plate, phragmoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: kinesin like protein for actin based chloroplast movement 2 (TAIR:AT5G65460.1); Has 13820 Blast hits to 12778 proteins in 615 species: Archae - 30; Bacteria - 578; Metazoa - 6060; Fungi - 1488; Plants - 1898; Viruses - 6; Other Eukaryotes - 3760 (source: NCBI BLink). & (o23826|k125_tobac : 174.0) 125 kDa kinesin-related protein - Nicotiana tabacum (Common tobacco) & (reliability: 806.0) & (original description: no original description)","protein_coding" "Kfl00229_0110","kfl00229_0110_v1.1","Klebsormidium nitens","(q43793|g6pdc_tobac : 609.0) Glucose-6-phosphate 1-dehydrogenase, chloroplast precursor (EC 1.1.1.49) (G6PD) - Nicotiana tabacum (Common tobacco) & (at5g35790 : 601.0) Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is more prevalent in developing organs but absent in the root.; glucose-6-phosphate dehydrogenase 1 (G6PD1); FUNCTIONS IN: glucose-6-phosphate dehydrogenase activity, protein binding; INVOLVED IN: pentose-phosphate shunt, oxidative branch, glucose metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-6-phosphate dehydrogenase, C-terminal (InterPro:IPR022675), Glucose-6-phosphate dehydrogenase, active site (InterPro:IPR019796), NAD(P)-binding domain (InterPro:IPR016040), Glucose-6-phosphate dehydrogenase (InterPro:IPR001282), Glucose-6-phosphate dehydrogenase, NAD-binding (InterPro:IPR022674); BEST Arabidopsis thaliana protein match is: glucose-6-phosphate dehydrogenase 2 (TAIR:AT5G13110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1202.0) & (original description: no original description)","protein_coding" "Kfl00230_0120","kfl00230_0120_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00233_0160","kfl00233_0160_v1.1","Klebsormidium nitens","(at1g48050 : 433.0) Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. Binds double stranded DNA breaks as a heterodimer with Ku70, involved in non-homologous end joining repair. Mutants are defective in T-DNA integration. Over expression confers increased resistance to DNA damage agents and increased susceptibility to T-DNA transformation.; KU80; FUNCTIONS IN: double-stranded DNA binding, protein binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ku70/Ku80, N-terminal alpha/beta (InterPro:IPR005161), DNA helicase, ATP-dependent, Ku type (InterPro:IPR006164), Spen Paralogue and Orthologue SPOC, C-terminal-like (InterPro:IPR016194), Ku70/Ku80 C-terminal arm (InterPro:IPR005160), Ku, C-terminal (InterPro:IPR014893); Has 786 Blast hits to 750 proteins in 217 species: Archae - 0; Bacteria - 40; Metazoa - 246; Fungi - 345; Plants - 62; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink). & (reliability: 866.0) & (original description: no original description)","protein_coding" "Kfl00236_0100","kfl00236_0100_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00238_0140","kfl00238_0140_v1.1","Klebsormidium nitens","(at5g54100 : 427.0) SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT4G27585.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 854.0) & (original description: no original description)","protein_coding" "Kfl00238_0170","kfl00238_0170_v1.1","Klebsormidium nitens","(at1g02890 : 595.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), SMAD/FHA domain (InterPro:IPR008984); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G02480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q96372|cdc48_capan : 184.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 1190.0) & (original description: no original description)","protein_coding" "Kfl00240_g18","kfl00240_g18_v1.1","Klebsormidium nitens","(at5g10980 : 254.0) Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q71h73|h33_vitvi : 253.0) Histone H3.3 - Vitis vinifera (Grape) & (reliability: 508.0) & (original description: no original description)","protein_coding" "Kfl00243_0080","kfl00243_0080_v1.1","Klebsormidium nitens","(at5g60040 : 1445.0) Encodes a subunit of RNA polymerase III (aka RNA polymerase C).; nuclear RNA polymerase C1 (NRPC1); FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding, zinc ion binding; INVOLVED IN: transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), DNA-directed RNA polymerase III largest subunit (InterPro:IPR015700), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083); BEST Arabidopsis thaliana protein match is: RNA polymerase II large subunit (TAIR:AT4G35800.1). & (p60288|rpoc1_phypa : 134.0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) - Physcomitrella patens (Moss) & (reliability: 2890.0) & (original description: no original description)","protein_coding" "Kfl00244_0100","kfl00244_0100_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00249_0120","kfl00249_0120_v1.1","Klebsormidium nitens","(at5g11040 : 605.0) TRS120; CONTAINS InterPro DOMAIN/s: Transport protein Trs120 (InterPro:IPR013935); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1210.0) & (original description: no original description)","protein_coding" "Kfl00258_0120","kfl00258_0120_v1.1","Klebsormidium nitens","(at4g39420 : 400.0) unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible; Has 20 Blast hits to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 800.0) & (original description: no original description)","protein_coding" "Kfl00265_0120","kfl00265_0120_v1.1","Klebsormidium nitens","(at5g49030 : 1204.0) ovule abortion 2 (OVA2); FUNCTIONS IN: in 6 functions; INVOLVED IN: tRNA aminoacylation for protein translation, ovule development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Plant disease resistance response protein (InterPro:IPR004265), Isoleucyl-tRNA synthetase (InterPro:IPR018353), Isoleucyl-tRNA synthetase, class Ia (InterPro:IPR002301), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Isoleucyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015905), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA glycosylase/AP lyase/isoleucyl tRNA synthetase, zinc finger domain (InterPro:IPR010663), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300); BEST Arabidopsis thaliana protein match is: Disease resistance-responsive (dirigent-like protein) family protein (TAIR:AT5G49040.1). & (reliability: 2408.0) & (original description: no original description)","protein_coding" "Kfl00269_0030","kfl00269_0030_v1.1","Klebsormidium nitens","(at3g06030 : 249.0) NPK1-related protein kinase 3; NPK1-related protein kinase 3 (NP3); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: cortical microtubule organization; LOCATED IN: apoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Mitogen activated protein kinase kinase kinase 3 (InterPro:IPR015748), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NPK1-related protein kinase 1 (TAIR:AT1G09000.1); Has 135037 Blast hits to 132652 proteins in 4867 species: Archae - 156; Bacteria - 15291; Metazoa - 50641; Fungi - 13369; Plants - 33230; Viruses - 554; Other Eukaryotes - 21796 (source: NCBI BLink). & (q5qn75|m2k1_orysa : 102.0) Mitogen-activated protein kinase kinase 1 (EC 2.7.12.2) (MAP kinase kinase 1) (MAPKK1) (OsMEK1) - Oryza sativa (Rice) & (reliability: 498.0) & (original description: no original description)","protein_coding" "Kfl00273_0160","kfl00273_0160_v1.1","Klebsormidium nitens","(at2g31170 : 581.0) SYCO ARATH; FUNCTIONS IN: cysteine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: cysteinyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cysteinyl-tRNA synthetase, class Ia (InterPro:IPR002308), Cysteinyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015803), Cysteinyl-tRNA synthetase, class Ia, DALR (InterPro:IPR015273), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Cysteinyl-tRNA synthetase, class Ia, C-terminal (InterPro:IPR015804); BEST Arabidopsis thaliana protein match is: Cysteinyl-tRNA synthetase, class Ia family protein (TAIR:AT5G38830.1); Has 10676 Blast hits to 10676 proteins in 2860 species: Archae - 252; Bacteria - 6117; Metazoa - 332; Fungi - 154; Plants - 139; Viruses - 3; Other Eukaryotes - 3679 (source: NCBI BLink). & (reliability: 1162.0) & (original description: no original description)","protein_coding" "Kfl00274_0130","kfl00274_0130_v1.1","Klebsormidium nitens","(at2g30630 : 199.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: cell killing; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, flower, pollen tube; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zeta toxin (InterPro:IPR010488); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G06750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 398.0) & (original description: no original description)","protein_coding" "Kfl00281_0020","kfl00281_0020_v1.1","Klebsormidium nitens","(at3g02460 : 136.0) Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: plant adhesion molecule 1 (TAIR:AT5G15930.1); Has 4815 Blast hits to 4807 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 2496; Fungi - 964; Plants - 519; Viruses - 0; Other Eukaryotes - 836 (source: NCBI BLink). & (reliability: 272.0) & (original description: no original description)","protein_coding" "Kfl00291_0020","kfl00291_0020_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00307_0050","kfl00307_0050_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00313_0020","kfl00313_0020_v1.1","Klebsormidium nitens","(p46869|fla10_chlre : 190.0) Kinesin-like protein FLA10 (Protein KHP1) - Chlamydomonas reinhardtii & (at5g60930 : 177.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G47820.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 354.0) & (original description: no original description)","protein_coding" "Kfl00313_g3","kfl00313_g3_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00315_0080","kfl00315_0080_v1.1","Klebsormidium nitens","(at2g44710 : 182.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT4G00830.2); Has 31429 Blast hits to 23398 proteins in 2969 species: Archae - 812; Bacteria - 21040; Metazoa - 874; Fungi - 1027; Plants - 329; Viruses - 0; Other Eukaryotes - 7347 (source: NCBI BLink). & (reliability: 364.0) & (original description: no original description)","protein_coding" "Kfl00316_0150","kfl00316_0150_v1.1","Klebsormidium nitens","(at5g13010 : 1240.0) embryo defective 3011 (EMB3011); FUNCTIONS IN: RNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative (TAIR:AT3G26560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 2480.0) & (original description: no original description)","protein_coding" "Kfl00318_0060","kfl00318_0060_v1.1","Klebsormidium nitens","(at3g44880 : 312.0) Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene.; ACCELERATED CELL DEATH 1 (ACD1); FUNCTIONS IN: iron-sulfur cluster binding, pheophorbide a oxygenase activity; INVOLVED IN: flower development, cell death, chlorophyll catabolic process, defense response to bacterium, incompatible interaction, fruit development; LOCATED IN: chloroplast, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rieske [2Fe-2S] iron-sulphur domain (InterPro:IPR017941), Pheophorbide a oxygenase (InterPro:IPR013626); BEST Arabidopsis thaliana protein match is: ACD1-like (TAIR:AT4G25650.1); Has 4072 Blast hits to 4065 proteins in 685 species: Archae - 4; Bacteria - 2839; Metazoa - 50; Fungi - 15; Plants - 409; Viruses - 0; Other Eukaryotes - 755 (source: NCBI BLink). & (q9zwm5|cao_chlre : 86.3) Chlorophyllide a oxygenase, chloroplast precursor (EC 1.13.12.14) (Chlorophyll a oxygenase) (Chlorophyll b synthase) - Chlamydomonas reinhardtii & (reliability: 624.0) & (original description: no original description)","protein_coding" "Kfl00321_0070","kfl00321_0070_v1.1","Klebsormidium nitens","(at1g78920 : 1139.0) Encodes a type II H+-PPases that localizes to and function as a proton pump of the Golgi apparatus in most tissues except for mature leaves.; vacuolar H+-pyrophosphatase 2 (VP2); FUNCTIONS IN: hydrogen-translocating pyrophosphatase activity; INVOLVED IN: proton transport; LOCATED IN: Golgi apparatus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: Inorganic H pyrophosphatase family protein (TAIR:AT1G16780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p21616|avp_phaau : 423.0) Pyrophosphate-energized vacuolar membrane proton pump (EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase) (H(+)-PPase) (Vacuolar H(+)-pyrophosphatase) - Phaseolus aureus (Mung bean) (Vigna radiata) & (reliability: 2278.0) & (original description: no original description)","protein_coding" "Kfl00328_0170","kfl00328_0170_v1.1","Klebsormidium nitens","(at5g15860 : 231.0) Encodes a protein with prenylcysteine methylesterase activity.; prenylcysteine methylesterase (PCME); CONTAINS InterPro DOMAIN/s: Carboxylesterase type B, active site (InterPro:IPR019826), Carboxylesterase, type B (InterPro:IPR002018); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G02410.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 436.0) & (original description: no original description)","protein_coding" "Kfl00329_0030","kfl00329_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00338_0040","kfl00338_0040_v1.1","Klebsormidium nitens","(at5g02310 : 216.0) Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.; proteolysis 6 (PRT6); CONTAINS InterPro DOMAIN/s: Zinc finger, N-recognin, metazoa (InterPro:IPR013993), Zinc finger, N-recognin (InterPro:IPR003126); Has 1893 Blast hits to 778 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 939; Fungi - 577; Plants - 100; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 432.0) & (original description: no original description)","protein_coding" "Kfl00338_0050","kfl00338_0050_v1.1","Klebsormidium nitens","(at5g02310 : 149.0) Encodes PROTEOLYSIS6 (PRT6), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Another component of the N-end rule pathway is arginyl-tRNA:protein arginyltransferase (ATE). Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.; proteolysis 6 (PRT6); CONTAINS InterPro DOMAIN/s: Zinc finger, N-recognin, metazoa (InterPro:IPR013993), Zinc finger, N-recognin (InterPro:IPR003126); Has 1893 Blast hits to 778 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 939; Fungi - 577; Plants - 100; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 298.0) & (original description: no original description)","protein_coding" "Kfl00343_0170","kfl00343_0170_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00369_0070","kfl00369_0070_v1.1","Klebsormidium nitens","(at2g03500 : 168.0) Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb-like transcription factor family protein (TAIR:AT1G68670.1); Has 20396 Blast hits to 7290 proteins in 193 species: Archae - 14; Bacteria - 20; Metazoa - 401; Fungi - 967; Plants - 1637; Viruses - 8; Other Eukaryotes - 17349 (source: NCBI BLink). & (reliability: 336.0) & (original description: no original description)","protein_coding" "Kfl00374_0050","kfl00374_0050_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00379_0100","kfl00379_0100_v1.1","Klebsormidium nitens","(at4g22285 : 572.0) Ubiquitin C-terminal hydrolases superfamily protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: Ubiquitin C-terminal hydrolases superfamily protein (TAIR:AT4G22350.2); Has 3604 Blast hits to 3114 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 2060; Fungi - 575; Plants - 445; Viruses - 0; Other Eukaryotes - 524 (source: NCBI BLink). & (reliability: 1140.0) & (original description: no original description)","protein_coding" "Kfl00382_0030","kfl00382_0030_v1.1","Klebsormidium nitens","(at4g27640 : 938.0) ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G19820.1); Has 2274 Blast hits to 2138 proteins in 232 species: Archae - 0; Bacteria - 13; Metazoa - 858; Fungi - 732; Plants - 312; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink). & (reliability: 1876.0) & (original description: no original description)","protein_coding" "Kfl00387_0100","kfl00387_0100_v1.1","Klebsormidium nitens","(at2g22400 : 427.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, RNA binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G40000.1); Has 8976 Blast hits to 8942 proteins in 2412 species: Archae - 298; Bacteria - 6215; Metazoa - 583; Fungi - 307; Plants - 251; Viruses - 0; Other Eukaryotes - 1322 (source: NCBI BLink). & (reliability: 854.0) & (original description: no original description)","protein_coding" "Kfl00390_0040","kfl00390_0040_v1.1","Klebsormidium nitens","(at4g29380 : 422.0) protein kinase family protein / WD-40 repeat family protein; FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), WD40 repeat 2 (InterPro:IPR019782), Armadillo-like helical (InterPro:IPR011989), WD40 repeat (InterPro:IPR001680), HEAT, type 2 (InterPro:IPR021133), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), WD40 repeat-like-containing domain (InterPro:IPR011046), Protein kinase, catalytic domain (InterPro:IPR000719), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Armadillo-type fold (InterPro:IPR016024), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G33770.1); Has 29441 Blast hits to 28057 proteins in 1177 species: Archae - 18; Bacteria - 2884; Metazoa - 11045; Fungi - 5111; Plants - 4360; Viruses - 46; Other Eukaryotes - 5977 (source: NCBI BLink). & (reliability: 844.0) & (original description: no original description)","protein_coding" "Kfl00395_0150","kfl00395_0150_v1.1","Klebsormidium nitens","(at5g51030 : 197.0) NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G61830.1); Has 71841 Blast hits to 71789 proteins in 3167 species: Archae - 666; Bacteria - 49161; Metazoa - 4545; Fungi - 3057; Plants - 2484; Viruses - 2; Other Eukaryotes - 11926 (source: NCBI BLink). & (reliability: 394.0) & (original description: no original description)","protein_coding" "Kfl00397_0100","kfl00397_0100_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00410_0030","kfl00410_0030_v1.1","Klebsormidium nitens","(at4g26620 : 242.0) Sucrase/ferredoxin-like family protein; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Sucraseferredoxin-like (InterPro:IPR009737), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Sucrase/ferredoxin-like family protein (TAIR:AT5G55900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 484.0) & (original description: no original description)","protein_coding" "Kfl00413_0030","kfl00413_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00417_0080","kfl00417_0080_v1.1","Klebsormidium nitens","(at5g61140 : 2262.0) Encodes a predicted protein with 30% identity with MER3/RCK.; U5 small nuclear ribonucleoprotein helicase; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), Sec63 domain, subgroup (InterPro:IPR018127), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase, putative (TAIR:AT1G20960.2). & (reliability: 4524.0) & (original description: no original description)","protein_coding" "Kfl00429_0040","kfl00429_0040_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00435_0050","kfl00435_0050_v1.1","Klebsormidium nitens","(at1g02170 : 333.0) Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain; metacaspase 1 (AMC1); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, induction of apoptosis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LSD1-type (InterPro:IPR005735), Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 2 (TAIR:AT4G25110.1); Has 1179 Blast hits to 1148 proteins in 266 species: Archae - 3; Bacteria - 262; Metazoa - 3; Fungi - 268; Plants - 419; Viruses - 0; Other Eukaryotes - 224 (source: NCBI BLink). & (reliability: 666.0) & (original description: no original description)","protein_coding" "Kfl00455_0060","kfl00455_0060_v1.1","Klebsormidium nitens","(at5g48370 : 407.0) Thioesterase/thiol ester dehydrase-isomerase superfamily protein; CONTAINS InterPro DOMAIN/s: Thioesterase superfamily (InterPro:IPR006683); BEST Arabidopsis thaliana protein match is: Thioesterase/thiol ester dehydrase-isomerase superfamily protein (TAIR:AT2G30720.1); Has 2835 Blast hits to 2174 proteins in 781 species: Archae - 49; Bacteria - 1954; Metazoa - 460; Fungi - 99; Plants - 81; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink). & (reliability: 814.0) & (original description: no original description)","protein_coding" "Kfl00457_0100","kfl00457_0100_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00475_0100","kfl00475_0100_v1.1","Klebsormidium nitens","(at3g52090 : 129.0) Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB11 and the E. oli RNA polymerase alpha subunit.; NRPB11; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, holoenzyme, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site (InterPro:IPR008193), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025). & (reliability: 258.0) & (original description: no original description)","protein_coding" "Kfl00476_0060","kfl00476_0060_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00479_0060","kfl00479_0060_v1.1","Klebsormidium nitens","(at4g39690 : 129.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane protein Mitofilin (InterPro:IPR019133); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 258.0) & (original description: no original description)","protein_coding" "Kfl00483_0020","kfl00483_0020_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00490_0080","kfl00490_0080_v1.1","Klebsormidium nitens","(at3g54460 : 639.0) SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), SNF2-related (InterPro:IPR000330), F-box domain, Skp2-like (InterPro:IPR022364), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 15028 Blast hits to 11196 proteins in 1367 species: Archae - 59; Bacteria - 4030; Metazoa - 3400; Fungi - 4173; Plants - 1458; Viruses - 121; Other Eukaryotes - 1787 (source: NCBI BLink). & (reliability: 1278.0) & (original description: no original description)","protein_coding" "Kfl00493_0030","kfl00493_0030_v1.1","Klebsormidium nitens","(at2g34660 : 286.0) encodes a multidrug resistance-associated protein that is MgATP-energized glutathione S-conjugate pump. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.; multidrug resistance-associated protein 2 (MRP2); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 1 (TAIR:AT1G30400.2). & (q6yuu5|mdr_orysa : 103.0) Putative multidrug resistance protein (P-glycoprotein) - Oryza sativa (Rice) & (reliability: 572.0) & (original description: no original description)","protein_coding" "Kfl00495_0070","kfl00495_0070_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00497_0010","kfl00497_0010_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00500_0080","kfl00500_0080_v1.1","Klebsormidium nitens","(at4g13670 : 167.0) plastid transcriptionally active 5 (PTAC5); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding, metabolic process; LOCATED IN: plastid chromosome, chloroplast thylakoid membrane, chloroplast, nucleoid, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan binding-like (InterPro:IPR002477), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305); Has 835 Blast hits to 827 proteins in 285 species: Archae - 9; Bacteria - 385; Metazoa - 155; Fungi - 28; Plants - 81; Viruses - 2; Other Eukaryotes - 175 (source: NCBI BLink). & (reliability: 334.0) & (original description: no original description)","protein_coding" "Kfl00507_0060","kfl00507_0060_v1.1","Klebsormidium nitens","(at3g12300 : 296.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF667 (InterPro:IPR007714); Has 373 Blast hits to 371 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 213; Fungi - 4; Plants - 71; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). & (reliability: 592.0) & (original description: no original description)","protein_coding" "Kfl00509_0060","kfl00509_0060_v1.1","Klebsormidium nitens"," (original description: no original description)","protein_coding" "Kfl00512_0120","kfl00512_0120_v1.1","Klebsormidium nitens","(q8lpb4|pskr_dauca : 204.0) Phytosulfokine receptor precursor (EC 2.7.11.1) (Phytosulfokine LRR receptor kinase) - Daucus carota (Carrot) & (at5g63930 : 200.0) Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT2G33170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 370.0) & (original description: no original description)","protein_coding" "Kfl00535_0080","kfl00535_0080_v1.1","Klebsormidium nitens","(at5g06600 : 117.0) Encodes a ubiquitin-specific protease.; ubiquitin-specific protease 12 (UBP12); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), MATH (InterPro:IPR002083), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 13 (TAIR:AT3G11910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description)","protein_coding" "Kfl00565_0080","kfl00565_0080_v1.1","Klebsormidium nitens","(at5g49770 : 223.0) Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: sperm cell, root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G49760.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o24585|cri4_maize : 179.0) Putative receptor protein kinase CRINKLY4 precursor (EC 2.7.11.1) - Zea mays (Maize) & (reliability: 432.0) & (original description: no original description)","protein_coding" "Kfl00566_0080","kfl00566_0080_v1.1","Klebsormidium nitens","(at3g05000 : 222.0) Transport protein particle (TRAPP) component; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194); Has 457 Blast hits to 457 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 137; Plants - 66; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). & (reliability: 444.0) & (original description: no original description)","protein_coding" "Kfl00597_0010","kfl00597_0010_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00607_0030","kfl00607_0030_v1.1","Klebsormidium nitens","(at3g05970 : 847.0) encode peroxisomal long-chain acyl-CoA synthetase (LACS) isozymes; long-chain acyl-CoA synthetase 6 (LACS6); FUNCTIONS IN: long-chain fatty acid-CoA ligase activity; INVOLVED IN: long-chain fatty acid metabolic process; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: long-chain acyl-CoA synthetase 7 (TAIR:AT5G27600.1); Has 54528 Blast hits to 52136 proteins in 3333 species: Archae - 925; Bacteria - 35165; Metazoa - 2570; Fungi - 2253; Plants - 2087; Viruses - 1; Other Eukaryotes - 11527 (source: NCBI BLink). & (p14912|4cl1_petcr : 135.0) 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) - Petroselinum crispum (Parsley) (Petroselinum hortense) & (reliability: 1694.0) & (original description: no original description)","protein_coding" "Kfl00617_0070","kfl00617_0070_v1.1","Klebsormidium nitens","(at3g19240 : 544.0) Vacuolar import/degradation, Vid27-related protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Vacuolar import/degradation, Vid27-related (InterPro:IPR013863); BEST Arabidopsis thaliana protein match is: Vacuolar import/degradation, Vid27-related protein (TAIR:AT4G33400.1); Has 312 Blast hits to 307 proteins in 136 species: Archae - 0; Bacteria - 1; Metazoa - 11; Fungi - 168; Plants - 82; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). & (reliability: 1088.0) & (original description: no original description)","protein_coding" "Kfl00631_0080","kfl00631_0080_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00638_0090","kfl00638_0090_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00651_0080","kfl00651_0080_v1.1","Klebsormidium nitens","(at3g14270 : 475.0) Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization.; FORMS APLOID AND BINUCLEATE CELLS 1B (FAB1B); CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (TAIR:AT4G33240.2); Has 8765 Blast hits to 8134 proteins in 458 species: Archae - 587; Bacteria - 13; Metazoa - 3836; Fungi - 1744; Plants - 978; Viruses - 3; Other Eukaryotes - 1604 (source: NCBI BLink). & (reliability: 950.0) & (original description: no original description)","protein_coding" "Kfl00671_0020","kfl00671_0020_v1.1","Klebsormidium nitens","(at2g25660 : 1067.0) embryo defective 2410 (emb2410); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF490 (InterPro:IPR007452); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 2134.0) & (original description: no original description)","protein_coding" "Kfl00704_0030","kfl00704_0030_v1.1","Klebsormidium nitens","(at2g04270 : 213.0) Similar to E.coli endoribonuclease E. Functions as a ribonuclease, is located in the chloroplast, and is involved in chloroplast development. Loss of function mutants are white and arrest at the cotyledon stage. The phenotype is rescued by providing sucrose.; RNAse E/G-like (RNEE/G); CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Carbohydrate-binding-like fold (InterPro:IPR013784), Ribonuclease E/G (InterPro:IPR004659), Glycoside hydrolase, carbohydrate-binding (InterPro:IPR002044), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Immunoglobulin-like fold (InterPro:IPR013783), RNA-binding protein AU-1/Ribonuclease E/G (InterPro:IPR019307). & (reliability: 426.0) & (original description: no original description)","protein_coding" "Kfl00704_g4","kfl00704_g4_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00737_0030","kfl00737_0030_v1.1","Klebsormidium nitens","(at1g68890 : 321.0) Homologous to the four eubacterial men genes involved in menanoquinone biosynthesis. Studies of mutants defective in this gene demonstrated its involvement in phylloquinone biosynthesis in Arabidopsis.; magnesium ion binding;thiamin pyrophosphate binding;hydro-lyases;catalytics;2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthases; FUNCTIONS IN: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity, hydro-lyase activity, magnesium ion binding, thiamin pyrophosphate binding, catalytic activity; INVOLVED IN: phylloquinone biosynthetic process, photosystem I stabilization; LOCATED IN: chloroplast; EXPRESSED IN: shoot, leaf whorl; CONTAINS InterPro DOMAIN/s: Menaquinone biosynthesis protein MenD (InterPro:IPR004433), Alpha/beta hydrolase fold-1 (InterPro:IPR000073), Mandelate racemase/muconate lactonizing enzyme, C-terminal (InterPro:IPR013342), Thiamine pyrophosphate enzyme, C-terminal TPP-binding (InterPro:IPR011766), Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain (InterPro:IPR012001), O-succinylbenzoic acid (OSB) synthetase, gamma proteobacteria/archaea (InterPro:IPR010196), Mandelate racemase/muconate lactonizing enzyme, conserved site (InterPro:IPR018110); BEST Arabidopsis thaliana protein match is: isochorismate synthase 2 (TAIR:AT1G18870.2); Has 22452 Blast hits to 22188 proteins in 2448 species: Archae - 403; Bacteria - 16894; Metazoa - 237; Fungi - 200; Plants - 484; Viruses - 7; Other Eukaryotes - 4227 (source: NCBI BLink). & (q9zpc0|ics_catro : 253.0) Isochorismate synthase, chloroplast precursor (EC 5.4.4.2) - Catharanthus roseus (Rosy periwinkle) (Madagascar periwinkle) & (reliability: 642.0) & (original description: no original description)","protein_coding" "Kfl00738_0090","kfl00738_0090_v1.1","Klebsormidium nitens","(at1g34110 : 251.0) Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat receptor-like protein kinase family protein (TAIR:AT3G24240.1); Has 229810 Blast hits to 121355 proteins in 3638 species: Archae - 147; Bacteria - 18757; Metazoa - 70622; Fungi - 9447; Plants - 104379; Viruses - 381; Other Eukaryotes - 26077 (source: NCBI BLink). & (p93194|rpk1_iponi : 237.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 496.0) & (original description: no original description)","protein_coding" "Kfl00741_0030","kfl00741_0030_v1.1","Klebsormidium nitens","(at5g05570 : 200.0) transducin family protein / WD-40 repeat family protein; FUNCTIONS IN: methyltransferase activity, nucleotide binding, nucleic acid binding; INVOLVED IN: vesicle-mediated transport, methylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), DNA methylase, N-6 adenine-specific, conserved site (InterPro:IPR002052), WD40 repeat, subgroup (InterPro:IPR019781), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G35560.2). & (reliability: 400.0) & (original description: no original description)","protein_coding" "Kfl00747_g2","kfl00747_g2_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00749_0020","kfl00749_0020_v1.1","Klebsormidium nitens","(at3g49600 : 375.0) Encodes a ubiquitin-specific protease which catalyzes deubiquitination of histone H2B and is required for heterochromatin silencing.Loss of function mutations display autonomous endosperm development and embryo arrest. Loss of function also results in an increase in expression of the PcG complex target gene PHE1.; ubiquitin-specific protease 26 (UBP26); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: seed development; LOCATED IN: nucleolus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin-specific peptidase, DUSP domain (InterPro:IPR006615), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 13 (TAIR:AT3G11910.1); Has 7210 Blast hits to 6677 proteins in 263 species: Archae - 0; Bacteria - 2; Metazoa - 3696; Fungi - 1305; Plants - 848; Viruses - 3; Other Eukaryotes - 1356 (source: NCBI BLink). & (reliability: 750.0) & (original description: no original description)","protein_coding" "Kfl00751_0010","kfl00751_0010_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00758_0030","kfl00758_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl00780_0030","kfl00780_0030_v1.1","Klebsormidium nitens","(at1g55860 : 726.0) encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.; ubiquitin-protein ligase 1 (UPL1); CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), E3 ubiquitin ligase, domain of unknown function DUF913 (InterPro:IPR010314), Ubiquitin interacting motif (InterPro:IPR003903), E3 ubiquitin ligase, domain of unknown function DUF908 (InterPro:IPR010309), HECT (InterPro:IPR000569), Armadillo-type fold (InterPro:IPR016024), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 2 (TAIR:AT1G70320.1). & (reliability: 1452.0) & (original description: no original description)","protein_coding" "Kfl00804_0030","kfl00804_0030_v1.1","Klebsormidium nitens","(at1g23230 : 641.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629). & (reliability: 1282.0) & (original description: no original description)","protein_coding" "Kfl00886_0050","kfl00886_0050_v1.1","Klebsormidium nitens","(at5g06370 : 186.0) NC domain-containing protein-related; CONTAINS InterPro DOMAIN/s: NC (InterPro:IPR007053); BEST Arabidopsis thaliana protein match is: NC domain-containing protein-related (TAIR:AT3G02700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 372.0) & (original description: no original description)","protein_coding" "Kfl00911_0030","kfl00911_0030_v1.1","Klebsormidium nitens","(at5g43745 : 521.0) Protein of unknown function (DUF1012); LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1012 (InterPro:IPR010420); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1012) (TAIR:AT5G02940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q75ld5|dmi1l_orysa : 209.0) Probable ion channel DMI1-like, chloroplast precursor - Oryza sativa (Rice) & (reliability: 1042.0) & (original description: no original description)","protein_coding" "Kfl00991_0020","kfl00991_0020_v1.1","Klebsormidium nitens","(at3g13530 : 479.0) MAP3K epsilon protein kinase 1 is functionally redundant with MAP3Ke2. Required for pollen development but not essential. map3ke1;map3ke2 double-mutant pollen grains develop plasma membrane irregularities following pollen mitosis I. Localized primarily in the plasma membrane. Expressed in leaf trichomes, root columella cells and developing ovules.; mitogen-activated protein kinase kinase kinase 7 (MAPKKK7); FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: plasma membrane organization, pollen development; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: ovule developmental stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 6 (TAIR:AT3G07980.1); Has 137235 Blast hits to 134768 proteins in 5401 species: Archae - 190; Bacteria - 15422; Metazoa - 52001; Fungi - 13364; Plants - 33616; Viruses - 670; Other Eukaryotes - 21972 (source: NCBI BLink). & (q5qn75|m2k1_orysa : 132.0) Mitogen-activated protein kinase kinase 1 (EC 2.7.12.2) (MAP kinase kinase 1) (MAPKK1) (OsMEK1) - Oryza sativa (Rice) & (reliability: 958.0) & (original description: no original description)","protein_coding" "Kfl01027_0020","kfl01027_0020_v1.1","Klebsormidium nitens","(at5g45190 : 327.0) Encodes a cyclin T partner CYCT1;5. Plays important roles in infection with Cauliflower mosaic virus (CaMV).; Cyclin family protein; FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: in 6 processes; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Transcription regulator cyclin (InterPro:IPR015429), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT4G19600.1); Has 4079 Blast hits to 3698 proteins in 345 species: Archae - 2; Bacteria - 149; Metazoa - 1860; Fungi - 545; Plants - 474; Viruses - 8; Other Eukaryotes - 1041 (source: NCBI BLink). & (p93411|ccnc_orysa : 97.4) G1/S-specific cyclin C-type - Oryza sativa (Rice) & (reliability: 654.0) & (original description: no original description)","protein_coding" "Kfl01055_0020","kfl01055_0020_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl01110_0010","kfl01110_0010_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding" "Kfl01110_0020","kfl01110_0020_v1.1","Klebsormidium nitens","(p16868|h2b4_volca : 167.0) Histone H2B.4 (H2B-IV) - Volvox carteri & (at2g28720 : 164.0) Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2B (InterPro:IPR000558), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT3G45980.1); Has 3535 Blast hits to 3431 proteins in 349 species: Archae - 0; Bacteria - 57; Metazoa - 2253; Fungi - 226; Plants - 491; Viruses - 2; Other Eukaryotes - 506 (source: NCBI BLink). & (reliability: 328.0) & (original description: no original description)","protein_coding" "Kfl01199_0010","kfl01199_0010_v1.1","Klebsormidium nitens","(at3g54280 : 169.0) ROOT GROWTH DEFECTIVE 3 (RGD3); FUNCTIONS IN: helicase activity, binding, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), DEAD-like helicase, N-terminal (InterPro:IPR014001), Armadillo-type fold (InterPro:IPR016024), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1). & (reliability: 338.0) & (original description: no original description)","protein_coding" "LOC_Os01g02880","No alias","Oryza sativa","fructose-bisphospate aldolase isozyme, putative, expressed","protein_coding" "LOC_Os01g05180","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g16540","No alias","Oryza sativa","NEDD8-activating enzyme E1 catalytic subunit, putative, expressed","protein_coding" "LOC_Os01g22500","No alias","Oryza sativa","craniofacial development protein 1, putative, expressed","protein_coding" "LOC_Os01g32660","No alias","Oryza sativa","STE_MEK_ste7_MAP2K.2 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed","protein_coding" "LOC_Os01g40720","No alias","Oryza sativa","pentatricopeptide, putative, expressed","protein_coding" "LOC_Os01g59670","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g61680","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os01g66110","No alias","Oryza sativa","methyltransferase, putative, expressed","protein_coding" "LOC_Os01g66510","No alias","Oryza sativa","MLO domain containing protein, putative, expressed","protein_coding" "LOC_Os01g67054","No alias","Oryza sativa","calreticulin precursor protein, putative, expressed","protein_coding" "LOC_Os01g68310","No alias","Oryza sativa","sas10/Utp3 family protein, expressed","protein_coding" "LOC_Os01g68830","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os02g01500","No alias","Oryza sativa","2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed","protein_coding" "LOC_Os02g06400","No alias","Oryza sativa","growth regulator related protein, putative, expressed","protein_coding" "LOC_Os02g06500","No alias","Oryza sativa","DSHCT domain containing protein, expressed","protein_coding" "LOC_Os02g11750","No alias","Oryza sativa","RNA recognition motif containing protein, putative, expressed","protein_coding" "LOC_Os02g18660","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os02g19629","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os02g25870","No alias","Oryza sativa","elongation factor Tu, putative, expressed","protein_coding" "LOC_Os02g26390","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os02g29300","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os02g36710","No alias","Oryza sativa","SET, putative, expressed","protein_coding" "LOC_Os02g43360","No alias","Oryza sativa","cytochrome b5-like Heme/Steroid binding domain containing protein, expressed","protein_coding" "LOC_Os02g46956","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os02g47860","No alias","Oryza sativa","uridine kinase, putative, expressed","protein_coding" "LOC_Os02g53384","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os02g56550","No alias","Oryza sativa","ABC transporter, ATP-binding protein, putative, expressed","protein_coding" "LOC_Os03g02680","No alias","Oryza sativa","cyclin-dependent kinase A-1, putative, expressed","protein_coding" "LOC_Os03g05470","No alias","Oryza sativa","tyrosine protein kinase domain containing protein, putative, expressed","protein_coding" "LOC_Os03g16010","No alias","Oryza sativa","BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed","protein_coding" "LOC_Os03g16874","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os03g19520","No alias","Oryza sativa","cyclin-related protein, putative, expressed","protein_coding" "LOC_Os03g20900","No alias","Oryza sativa","Myb transcription factor, putative, expressed","protein_coding" "LOC_Os03g26960","No alias","Oryza sativa","intron-binding protein aquarius, putative, expressed","protein_coding" "LOC_Os03g38930","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os03g44310","No alias","Oryza sativa","initiation factor 2 subunit family domain containing protein, expressed","protein_coding" "LOC_Os03g44530","No alias","Oryza sativa","GTPase of unknown function domain containing protein, putative, expressed","protein_coding" "LOC_Os03g53650","No alias","Oryza sativa","cysteine synthase, putative, expressed","protein_coding" "LOC_Os03g53950","No alias","Oryza sativa","strictosidine synthase, putative, expressed","protein_coding" "LOC_Os03g57900","No alias","Oryza sativa","zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed","protein_coding" "LOC_Os03g61560","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os03g61590","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os03g63920","No alias","Oryza sativa","KAP-2, putative, expressed","protein_coding" "LOC_Os03g64200","No alias","Oryza sativa","ABC-2 type transporter, putative, expressed","protein_coding" "LOC_Os04g01290","No alias","Oryza sativa","proteasome subunit, putative, expressed","protein_coding" "LOC_Os04g02870","No alias","Oryza sativa","RNA recognition motif containing protein, putative, expressed","protein_coding" "LOC_Os04g30430","No alias","Oryza sativa","nuclear transport factor 2, putative, expressed","protein_coding" "LOC_Os04g35510","No alias","Oryza sativa","CENP-E-like kinetochore protein, putative, expressed","protein_coding" "LOC_Os04g36590","No alias","Oryza sativa","transposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os04g38970","No alias","Oryza sativa","protein binding protein, putative, expressed","protein_coding" "LOC_Os04g40850","No alias","Oryza sativa","26S proteasome non-ATPase regulatory subunit 6, putative, expressed","protein_coding" "LOC_Os04g42270","No alias","Oryza sativa","60S ribosomal protein L23A, putative, expressed","protein_coding" "LOC_Os04g43680","No alias","Oryza sativa","MYB family transcription factor, putative, expressed","protein_coding" "LOC_Os04g45170","No alias","Oryza sativa","leucine-rich repeat family protein, putative, expressed","protein_coding" "LOC_Os04g56620","No alias","Oryza sativa","molybdopterin biosynthesis protein CNX1, putative, expressed","protein_coding" "LOC_Os05g02260","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os05g05840","No alias","Oryza sativa","tRNA synthetase class II core domain containing protein, expressed","protein_coding" "LOC_Os05g06310","No alias","Oryza sativa","60S ribosomal protein L18-3, putative, expressed","protein_coding" "LOC_Os05g06680","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os05g37800","No alias","Oryza sativa","DUF740 domain containing protein, expressed","protein_coding" "LOC_Os05g41120","No alias","Oryza sativa","endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed","protein_coding" "LOC_Os05g45930","No alias","Oryza sativa","IQ calmodulin-binding motif family protein, putative, expressed","protein_coding" "LOC_Os05g48510","No alias","Oryza sativa","phenylalanyl-tRNA synthetase beta chain, putative, expressed","protein_coding" "LOC_Os05g48690","No alias","Oryza sativa","transcription factor like protein, putative, expressed","protein_coding" "LOC_Os05g49230","No alias","Oryza sativa","ribosomal RNA large subunit methyltransferase J, putative, expressed","protein_coding" "LOC_Os06g01980","No alias","Oryza sativa","AAA family ATPase, putative, expressed","protein_coding" "LOC_Os06g02810","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os06g03830","No alias","Oryza sativa","retinol dehydrogenase, putative, expressed","protein_coding" "LOC_Os06g12160","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding" "LOC_Os06g14490","No alias","Oryza sativa","calmodulin-binding heat-shock protein, putative, expressed","protein_coding" "LOC_Os06g30130","No alias","Oryza sativa","cysteine-rich receptor-like protein kinase 10 precursor, putative, expressed","protein_coding" "LOC_Os06g34770","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os06g36590","No alias","Oryza sativa","transporter, monovalent cation:proton antiporter-2 family, putative, expressed","protein_coding" "LOC_Os06g38970","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os06g45730","No alias","Oryza sativa","MBTB11 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed","protein_coding" "LOC_Os07g08729","No alias","Oryza sativa","ATP-dependent DNA helicase 2 subunit 1, putative, expressed","protein_coding" "LOC_Os07g14270","No alias","Oryza sativa","calreticulin precursor protein, putative, expressed","protein_coding" "LOC_Os07g25440","No alias","Oryza sativa","WD domain, G-beta repeat domain containing protein, expressed","protein_coding" "LOC_Os07g43980","No alias","Oryza sativa","DEAD-box ATP-dependent RNA helicase, putative, expressed","protein_coding" "LOC_Os07g48370","No alias","Oryza sativa","glycosyl transferase, family 8, putative, expressed","protein_coding" "LOC_Os08g04440","No alias","Oryza sativa","RNA recognition motif containing protein, putative, expressed","protein_coding" "LOC_Os08g09200","No alias","Oryza sativa","aconitate hydratase protein, putative, expressed","protein_coding" "LOC_Os08g10320","No alias","Oryza sativa","SHR5-receptor-like kinase, putative, expressed","protein_coding" "LOC_Os08g16610","No alias","Oryza sativa","Rad21 / Rec8 like protein, putative, expressed","protein_coding" "LOC_Os08g26720","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os08g27676","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os08g38850","No alias","Oryza sativa","phosphatidylinositol transfer, putative, expressed","protein_coding" "LOC_Os09g16995","No alias","Oryza sativa","transposon protein, putative, CACTA, En/Spm sub-class, expressed","protein_coding" "LOC_Os09g30180","No alias","Oryza sativa","OsFBX331 - F-box domain containing protein, expressed","protein_coding" "LOC_Os09g31970","No alias","Oryza sativa","3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed","protein_coding" "LOC_Os09g38440","No alias","Oryza sativa","ATXR, putative, expressed","protein_coding" "LOC_Os10g02210","No alias","Oryza sativa","peptide transporter PTR2, putative, expressed","protein_coding" "LOC_Os10g21940","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os10g37430","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os11g10400","No alias","Oryza sativa","OsFBX419 - F-box domain containing protein, expressed","protein_coding" "LOC_Os11g11020","No alias","Oryza sativa","DAG protein, chloroplast precursor, putative, expressed","protein_coding" "LOC_Os11g19250","No alias","Oryza sativa","AARP2CN domain containing protein, expressed","protein_coding" "LOC_Os11g29490","No alias","Oryza sativa","plasma membrane ATPase, putative, expressed","protein_coding" "LOC_Os11g43990","No alias","Oryza sativa","expressed protein","protein_coding" "LOC_Os12g01370","No alias","Oryza sativa","fatty acid desaturase, putative, expressed","protein_coding" "LOC_Os12g20070","No alias","Oryza sativa","retrotransposon protein, putative, unclassified, expressed","protein_coding" "LOC_Os12g34340","No alias","Oryza sativa","pentatricopeptide, putative, expressed","protein_coding" "LOC_Os12g36830","No alias","Oryza sativa","pathogenesis-related Bet v I family protein, putative, expressed","protein_coding" "MA_10260690g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding" "MA_10426614g0010","No alias","Picea abies","(at5g59720 : 200.0) encodes a low molecular weight heat shock protein that contains the heat shock element in the promoter region. Expression is induced in response to heat shock.; heat shock protein 18.2 (HSP18.2); CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G53540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p27880|hsp12_medsa : 193.0) 18.2 kDa class I heat shock protein - Medicago sativa (Alfalfa) & (reliability: 400.0) & (original description: no original description)","protein_coding" "MA_10428150g0010","No alias","Picea abies","(at1g50660 : 225.0) unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20350.1); Has 21445 Blast hits to 15134 proteins in 1325 species: Archae - 461; Bacteria - 2309; Metazoa - 11052; Fungi - 1737; Plants - 1035; Viruses - 42; Other Eukaryotes - 4809 (source: NCBI BLink). & (reliability: 450.0) & (original description: no original description)","protein_coding" "MA_10430336g0010","No alias","Picea abies","(at5g40160 : 176.0) Encodes ankyrin repeat protein EMB506. Mutations in this locus result in embryo lethality.; embryo defective 506 (EMB506); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ankyrin repeat protein (TAIR:AT5G66055.1); Has 90387 Blast hits to 29284 proteins in 1374 species: Archae - 134; Bacteria - 8440; Metazoa - 46466; Fungi - 7182; Plants - 3258; Viruses - 1346; Other Eukaryotes - 23561 (source: NCBI BLink). & (reliability: 352.0) & (original description: no original description)","protein_coding" "MA_10430872g0010","No alias","Picea abies","(at1g18580 : 263.0) Encodes a protein with putative galacturonosyltransferase activity.; galacturonosyltransferase 11 (GAUT11); FUNCTIONS IN: polygalacturonate 4-alpha-galacturonosyltransferase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase 10 (TAIR:AT2G20810.1); Has 1461 Blast hits to 1453 proteins in 263 species: Archae - 0; Bacteria - 484; Metazoa - 143; Fungi - 0; Plants - 819; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). & (reliability: 526.0) & (original description: no original description)","protein_coding" "MA_10434290g0020","No alias","Picea abies","(at1g80440 : 238.0) Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G15670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 476.0) & (original description: no original description)","protein_coding" "MA_10434848g0010","No alias","Picea abies","(q9sbq9|f3ph_pethy : 322.0) Flavonoid 3'-monooxygenase (EC 1.14.13.21) (Flavonoid 3'-hydroxylase) (Cytochrome P450 75B2) - Petunia hybrida (Petunia) & (at5g07990 : 308.0) Required for flavonoid 3' hydroxylase activity.; TRANSPARENT TESTA 7 (TT7); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 706, subfamily A, polypeptide 6 (TAIR:AT4G12320.1); Has 35179 Blast hits to 34934 proteins in 1774 species: Archae - 51; Bacteria - 4733; Metazoa - 12156; Fungi - 7299; Plants - 9637; Viruses - 3; Other Eukaryotes - 1300 (source: NCBI BLink). & (reliability: 592.0) & (original description: no original description)","protein_coding" "MA_10436455g0010","No alias","Picea abies","(at1g80420 : 109.0) ATXRCC1; FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: DNA repair; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357). & (reliability: 218.0) & (original description: no original description)","protein_coding" "MA_10436826g0010","No alias","Picea abies","(at5g08100 : 207.0) N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G16150.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q9zsd6|aspg_luplu : 198.0) L-asparaginase precursor (EC 3.5.1.1) (L-asparagine amidohydrolase) [Contains: L-asparaginase subunit alpha; L-asparaginase subunit beta] - Lupinus luteus (European yellow lupin) & (reliability: 414.0) & (original description: no original description)","protein_coding" "MA_11732g0010","No alias","Picea abies","(at2g26980 : 454.0) encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers.; CBL-interacting protein kinase 3 (CIPK3); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: Ca2+regulated serine-threonine protein kinase family protein (TAIR:AT5G21326.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 441.0) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 908.0) & (original description: no original description)","protein_coding" "MA_12760g0020","No alias","Picea abies","(at3g04730 : 164.0) early auxin-induced (IAA16); indoleacetic acid-induced protein 16 (IAA16); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid 7 (TAIR:AT3G23050.1); Has 1752 Blast hits to 1751 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1751; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (p0c132|iaa30_orysa : 155.0) Auxin-responsive protein IAA30 (Indoleacetic acid-induced protein 30) - Oryza sativa (Rice) & (reliability: 306.0) & (original description: no original description)","protein_coding" "MA_199593g0010","No alias","Picea abies","(at4g05160 : 302.0) Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.; AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity, fatty-acyl-CoA synthase activity; INVOLVED IN: jasmonic acid biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: OPC-8:0 CoA ligase1 (TAIR:AT1G20510.1); Has 86858 Blast hits to 79133 proteins in 3797 species: Archae - 1159; Bacteria - 54259; Metazoa - 3570; Fungi - 4802; Plants - 2877; Viruses - 1; Other Eukaryotes - 20190 (source: NCBI BLink). & (p14912|4cl1_petcr : 147.0) 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) - Petroselinum crispum (Parsley) (Petroselinum hortense) & (reliability: 604.0) & (original description: no original description)","protein_coding" "MA_205209g0010","No alias","Picea abies","(at5g07860 : 142.0) HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G07870.1); Has 2502 Blast hits to 2496 proteins in 153 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 108; Plants - 2386; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). & (o24645|hcbt1_diaca : 110.0) Anthranilate N-benzoyltransferase protein 1 (EC 2.3.1.144) (Anthranilate N-hydroxycinnamoyl/benzoyltransferase 1) - Dianthus caryophyllus (Carnation) (Clove pink) & (reliability: 258.0) & (original description: no original description)","protein_coding" "MA_206191g0010","No alias","Picea abies","(at1g16970 : 121.0) Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity.; KU70 homolog (KU70); FUNCTIONS IN: double-stranded DNA binding, protein binding; INVOLVED IN: DNA repair, response to heat, telomere maintenance; LOCATED IN: nucleus, DNA-dependent protein kinase-DNA ligase 4 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ku70/Ku80, N-terminal alpha/beta (InterPro:IPR005161), DNA-binding SAP (InterPro:IPR003034), DNA helicase, ATP-dependent, Ku type (InterPro:IPR006164), Spen Paralogue and Orthologue SPOC, C-terminal-like (InterPro:IPR016194), Ku70/Ku80 C-terminal arm (InterPro:IPR005160), DNA helicase, ATP-dependent, Ku70 subunit (InterPro:IPR006165); Has 475 Blast hits to 466 proteins in 181 species: Archae - 0; Bacteria - 6; Metazoa - 182; Fungi - 177; Plants - 52; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). & (reliability: 242.0) & (original description: no original description)","protein_coding" "MA_212053g0010","No alias","Picea abies","(at5g59720 : 101.0) encodes a low molecular weight heat shock protein that contains the heat shock element in the promoter region. Expression is induced in response to heat shock.; heat shock protein 18.2 (HSP18.2); CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G53540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p04793|hsp13_soybn : 98.2) 17.5 kDa class I heat shock protein (HSP 17.5-M) - Glycine max (Soybean) & (reliability: 202.0) & (original description: no original description)","protein_coding" "MA_220296g0010","No alias","Picea abies","(at2g01990 : 90.5) unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14630.1); Has 118 Blast hits to 118 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 181.0) & (original description: no original description)","protein_coding" "MA_23866g0010","No alias","Picea abies","(at1g79770 : 105.0) Protein of unknown function (DUF1677); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1677, plant (InterPro:IPR012876); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1677) (TAIR:AT5G25840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 210.0) & (original description: no original description)","protein_coding" "MA_24774g0010","No alias","Picea abies","(at5g59720 : 211.0) encodes a low molecular weight heat shock protein that contains the heat shock element in the promoter region. Expression is induced in response to heat shock.; heat shock protein 18.2 (HSP18.2); CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT1G53540.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p04793|hsp13_soybn : 211.0) 17.5 kDa class I heat shock protein (HSP 17.5-M) - Glycine max (Soybean) & (reliability: 422.0) & (original description: no original description)","protein_coding" "MA_27424g0010","No alias","Picea abies","(at5g35330 : 191.0) Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins.; methyl-CPG-binding domain protein 02 (MBD02); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 12 (TAIR:AT5G35338.2). & (reliability: 382.0) & (original description: no original description)","protein_coding" "MA_34359g0010","No alias","Picea abies","(at1g80160 : 180.0) Lactoylglutathione lyase / glyoxalase I family protein; FUNCTIONS IN: lactoylglutathione lyase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Lactoylglutathione lyase / glyoxalase I family protein (TAIR:AT1G15380.2); Has 148 Blast hits to 148 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 360.0) & (original description: no original description)","protein_coding" "MA_371064g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding" "MA_501673g0010","No alias","Picea abies","(at1g75280 : 120.0) isoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress.; NmrA-like negative transcriptional regulator family protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: response to oxidative stress, response to cadmium ion, response to cyclopentenone; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G75290.1); Has 2708 Blast hits to 2703 proteins in 629 species: Archae - 36; Bacteria - 1150; Metazoa - 16; Fungi - 663; Plants - 623; Viruses - 7; Other Eukaryotes - 213 (source: NCBI BLink). & (p52579|ifrh_tobac : 109.0) Isoflavone reductase homolog A622 (EC 1.3.1.-) - Nicotiana tabacum (Common tobacco) & (reliability: 240.0) & (original description: no original description)","protein_coding" "MA_58210g0010","No alias","Picea abies","(at1g07590 : 517.0) Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: PENTATRICOPEPTIDE REPEAT 596 (TAIR:AT1G80270.3); Has 14416 Blast hits to 6927 proteins in 166 species: Archae - 0; Bacteria - 10; Metazoa - 31; Fungi - 36; Plants - 14001; Viruses - 0; Other Eukaryotes - 338 (source: NCBI BLink). & (reliability: 1034.0) & (original description: no original description)","protein_coding" "MA_5g0010","No alias","Picea abies","(at4g05160 : 365.0) Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.; AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: 4-coumarate-CoA ligase activity, fatty-acyl-CoA synthase activity; INVOLVED IN: jasmonic acid biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: OPC-8:0 CoA ligase1 (TAIR:AT1G20510.1); Has 86858 Blast hits to 79133 proteins in 3797 species: Archae - 1159; Bacteria - 54259; Metazoa - 3570; Fungi - 4802; Plants - 2877; Viruses - 1; Other Eukaryotes - 20190 (source: NCBI BLink). & (p14912|4cl1_petcr : 206.0) 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) - Petroselinum crispum (Parsley) (Petroselinum hortense) & (reliability: 730.0) & (original description: no original description)","protein_coding" "MA_87148g0010","No alias","Picea abies","(at2g25737 : 306.0) Sulfite exporter TauE/SafE family protein; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF81 (InterPro:IPR002781); BEST Arabidopsis thaliana protein match is: Sulfite exporter TauE/SafE family protein (TAIR:AT2G36630.1); Has 3417 Blast hits to 2961 proteins in 724 species: Archae - 129; Bacteria - 1927; Metazoa - 0; Fungi - 0; Plants - 198; Viruses - 0; Other Eukaryotes - 1163 (source: NCBI BLink). & (reliability: 612.0) & (original description: no original description)","protein_coding" "MA_87148g0020","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding" "MA_954835g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding" "MA_99876g0010","No alias","Picea abies","(at4g32295 : 209.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G24150.1); Has 34 Blast hits to 34 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 418.0) & (original description: no original description)","protein_coding" "Mp1g00210.1","No alias","Marchantia polymorpha","G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 OS=Arabidopsis thaliana (sp|q9flv4|y5248_arath : 249.0) & Enzyme classification.EC_2 transferases.EC_2.7 transferase transferring phosphorus-containing group(50.2.7 : 105.4)","protein_coding" "Mp1g02720.1","No alias","Marchantia polymorpha","component KU70 of Ku70-Ku80 helicase complex","protein_coding" "Mp1g05040.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp1g05510.1","No alias","Marchantia polymorpha","RNA helicase component SKI2 of SUPERKILLER (SKI) regulation complex","protein_coding" "Mp1g05650.1","No alias","Marchantia polymorpha","endonuclease (FAN1)","protein_coding" "Mp1g06420.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp1g06700.1","No alias","Marchantia polymorpha","Adenine DNA glycosylase OS=Arabidopsis thaliana (sp|f4jrf4|mutyh_arath : 304.0)","protein_coding" "Mp1g08690.1","No alias","Marchantia polymorpha","trehalose-6-phosphate phosphatase","protein_coding" "Mp1g09780.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp1g11040.1","No alias","Marchantia polymorpha","SNF2 domain-containing protein CLASSY 2 OS=Arabidopsis thaliana (sp|f4k493|clsy2_arath : 365.0)","protein_coding" "Mp1g11110.1","No alias","Marchantia polymorpha","component TAF2 of TFIId basal transcription regulation complex","protein_coding" "Mp1g11120.1","No alias","Marchantia polymorpha","component TAF2 of TFIId basal transcription regulation complex","protein_coding" "Mp1g11800.1","No alias","Marchantia polymorpha","assembly factor BA57 of mitochondrial ISC system transfer phase","protein_coding" "Mp1g19260.1","No alias","Marchantia polymorpha","AGP beta-1,6-galactosyltransferase","protein_coding" "Mp1g19790.1","No alias","Marchantia polymorpha","component FtsH7|9 of FtsH plastidial protease complexes","protein_coding" "Mp1g24750.1","No alias","Marchantia polymorpha","monomeric E3 ubiquitin ligase (HECT)","protein_coding" "Mp1g28610.1","No alias","Marchantia polymorpha","tRNA methylthiotransferase","protein_coding" "Mp2g00270.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp2g00380.1","No alias","Marchantia polymorpha","pheophorbide a oxygenase (PAO)","protein_coding" "Mp2g00570.1","No alias","Marchantia polymorpha","component RPL23a of LSU proteome component","protein_coding" "Mp2g07010.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp2g09860.1","No alias","Marchantia polymorpha","component KU80 of Ku70-Ku80 helicase complex","protein_coding" "Mp2g11230.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp2g12910.1","No alias","Marchantia polymorpha","component FBX of SCF E3 ubiquitin ligase complex","protein_coding" "Mp2g14110.1","No alias","Marchantia polymorpha","transcription factor (mTERF)","protein_coding" "Mp2g19810.1","No alias","Marchantia polymorpha","MAP-kinase phosphatase","protein_coding" "Mp2g24120.1","No alias","Marchantia polymorpha","Serine/threonine-protein kinase TOR OS=Oryza sativa subsp. japonica (sp|q0djs1|tor_orysj : 150.0)","protein_coding" "Mp2g24900.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp3g02110.1","No alias","Marchantia polymorpha","class-III histone deacetylase","protein_coding" "Mp3g15630.1","No alias","Marchantia polymorpha","associated component RACK1 of SSU proteome","protein_coding" "Mp3g17350.1","No alias","Marchantia polymorpha","transcription factor (bHLH)","protein_coding" "Mp3g22370.1","No alias","Marchantia polymorpha","DNA translocase (RecG)","protein_coding" "Mp4g00870.1","No alias","Marchantia polymorpha","EXO9-SUPERKILLER interaction factor (SKI7). GTPase component HBS1/SPL33 of DOM34-HBS1 aberrant mRNA detection complex","protein_coding" "Mp4g09180.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp4g10030.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp4g14050.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp5g03860.1","No alias","Marchantia polymorpha","DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. japonica (sp|a3avh5|rh13_orysj : 583.0)","protein_coding" "Mp5g08240.1","No alias","Marchantia polymorpha","protein kinase (CLK/LAMMER)","protein_coding" "Mp5g14640.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp5g17290.1","No alias","Marchantia polymorpha","glutaredoxin","protein_coding" "Mp6g06650.1","No alias","Marchantia polymorpha","component Pex1 of Pex1-Pex6 subcomplex","protein_coding" "Mp6g14650.1","No alias","Marchantia polymorpha","protein kinase (PIKK). phosphatidylinositol kinase component TOR of TORC complex","protein_coding" "Mp7g03720.1","No alias","Marchantia polymorpha","rDNA transcriptional regulator (NOF1)","protein_coding" "Mp7g04160.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp7g08540.1","No alias","Marchantia polymorpha","Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum (sp|p94026|rbcmt_tobac : 103.0)","protein_coding" "Mp7g09450.1","No alias","Marchantia polymorpha","Pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Arabidopsis thaliana (sp|q0wnn7|pp176_arath : 320.0)","protein_coding" "Mp7g19570.1","No alias","Marchantia polymorpha","C3H zinc finger transcription factor","protein_coding" "Mp8g00190.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding" "Mp8g08460.1","No alias","Marchantia polymorpha","CBS domain-containing protein CBSX5 OS=Arabidopsis thaliana (sp|q84wq5|cbsx5_arath : 136.0)","protein_coding" "Mp8g12510.1","No alias","Marchantia polymorpha","C2H2 zinc finger transcription factor","protein_coding" "Mp8g15610.1","No alias","Marchantia polymorpha","component BAF255/170 of chromatin remodeling complex","protein_coding" "Potri.002G148200","No alias","Populus trichocarpa","Ku80 family protein","protein_coding" "Potri.011G107000","No alias","Populus trichocarpa","KU70 homolog","protein_coding" "Potri.011G107100","No alias","Populus trichocarpa","KU70 homolog","protein_coding" "Potri.011G107400","No alias","Populus trichocarpa","KU70 homolog","protein_coding" "Potri.014G069700","No alias","Populus trichocarpa","Ku80 family protein","protein_coding" "Pp1s105_216V6","No alias","Physcomitrella patens","cop9 constitutive photomorphogenic homolog subunit 2","protein_coding" "Pp1s121_27V6","No alias","Physcomitrella patens","ku p80 dna","protein_coding" "Pp1s121_85V6","No alias","Physcomitrella patens","F7F1.3; expressed protein [Arabidopsis thaliana]","protein_coding" "Pp1s122_142V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s124_23V6","No alias","Physcomitrella patens","bhlh transcription factor","protein_coding" "Pp1s126_60V6","No alias","Physcomitrella patens","F22I13.1; protein kinase family protein [Arabidopsis thaliana]","protein_coding" "Pp1s12_163V6","No alias","Physcomitrella patens","F23E12.140; transporter-related [Arabidopsis thaliana]","protein_coding" "Pp1s12_192V6","No alias","Physcomitrella patens","phosphoribosylamine--glycine ligase","protein_coding" "Pp1s12_414V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s132_58V6","No alias","Physcomitrella patens","protein kinase (ame2 afc1)","protein_coding" "Pp1s132_67V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s136_142V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s143_44V6","No alias","Physcomitrella patens","dynein heavy","protein_coding" "Pp1s154_81V6","No alias","Physcomitrella patens","lipase precursor","protein_coding" "Pp1s16_333V6","No alias","Physcomitrella patens","protein kinase","protein_coding" "Pp1s174_93V6","No alias","Physcomitrella patens","set domain protein","protein_coding" "Pp1s181_107V6","No alias","Physcomitrella patens","amino acid selective channel protein","protein_coding" "Pp1s226_43V6","No alias","Physcomitrella patens","triacylglycerol lipase","protein_coding" "Pp1s230_66V6","No alias","Physcomitrella patens","F17I23.270; expressed protein [Arabidopsis thaliana]","protein_coding" "Pp1s233_16V6","No alias","Physcomitrella patens","pft1 (phytochrome and flowering time 1) transcription coactivator","protein_coding" "Pp1s235_117V6","No alias","Physcomitrella patens","F18A8.10; leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana]","protein_coding" "Pp1s240_78V6","No alias","Physcomitrella patens","F11I4.4; mov34 family protein [Arabidopsis thaliana]","protein_coding" "Pp1s24_221V6","No alias","Physcomitrella patens","suppressor of variegation 3-9 homolog 2","protein_coding" "Pp1s24_249V6","No alias","Physcomitrella patens","at1g19710","protein_coding" "Pp1s24_7V6","No alias","Physcomitrella patens","isochorismate synthase","protein_coding" "Pp1s25_346V6","No alias","Physcomitrella patens","Probable potassium transporter 2 (OsHAK2) [no tax name]","protein_coding" "Pp1s264_33V6","No alias","Physcomitrella patens","K18C1.7; cyclin family [Arabidopsis thaliana]","protein_coding" "Pp1s273_51V6","No alias","Physcomitrella patens","mikc* mads-box transcription factor","protein_coding" "Pp1s28_247V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s299_4V6","No alias","Physcomitrella patens","ku p70 dna","protein_coding" "Pp1s302_56V6","No alias","Physcomitrella patens","T19J18.2; Met-10+ like family protein / kelch repeat-containing protein [Arabidopsis thaliana]","protein_coding" "Pp1s303_58V6","No alias","Physcomitrella patens","leucine-rich repeat disease resistance protein","protein_coding" "Pp1s330_35V6","No alias","Physcomitrella patens","tkl family protein kinase","protein_coding" "Pp1s33_245V6","No alias","Physcomitrella patens","sulfonate biosynthesis","protein_coding" "Pp1s33_7V6","No alias","Physcomitrella patens","sigma 54 modulation protein ribosomal protein s30ea","protein_coding" "Pp1s351_40V6","No alias","Physcomitrella patens","ha-tagged protein kinase domain ofmitogen-activated protein kinase kinase kinase","protein_coding" "Pp1s353_7V6","No alias","Physcomitrella patens","abc transporter family protein","protein_coding" "Pp1s35_131V6","No alias","Physcomitrella patens","chaperone protein","protein_coding" "Pp1s36_9V6","No alias","Physcomitrella patens","K22G18.9; ARF GTPase-activating domain-containing protein [Arabidopsis thaliana]","protein_coding" "Pp1s381_35V6","No alias","Physcomitrella patens","zinc finger","protein_coding" "Pp1s387_57V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s39_105V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s3_182V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s3_519V6","No alias","Physcomitrella patens","F6E21.1; expressed protein [Arabidopsis thaliana]","protein_coding" "Pp1s401_28V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s403_21V6","No alias","Physcomitrella patens","MCA23.20; expressed protein [Arabidopsis thaliana]","protein_coding" "Pp1s42_193V6","No alias","Physcomitrella patens","phosphoribosyl pyrophosphate synthetase","protein_coding" "Pp1s47_44V6","No alias","Physcomitrella patens","chromatin remodeling complex subunit","protein_coding" "Pp1s49_280V6","No alias","Physcomitrella patens","ribonuclease p protein subunit p30 (r protein p30) (rnase p subunit 2)","protein_coding" "Pp1s59_238V6","No alias","Physcomitrella patens","mitochondrial substrate carrier family protein","protein_coding" "Pp1s62_62V6","No alias","Physcomitrella patens","No description available","protein_coding" "Pp1s6_10V6","No alias","Physcomitrella patens","hypothetical protein [Dictyostelium discoideum]","protein_coding" "Pp1s77_252V6","No alias","Physcomitrella patens","anthranilate synthase component","protein_coding" "Pp1s78_226V6","No alias","Physcomitrella patens","dna-dependent protein kinase catalytic subunit","protein_coding" "Pp1s79_94V6","No alias","Physcomitrella patens","haloacid dehalogenase-like hydrolase domain-containing protein 1a","protein_coding" "Pp1s84_276V6","No alias","Physcomitrella patens","hypothetical protein [Dictyostelium discoideum]","protein_coding" "Pp1s91_100V6","No alias","Physcomitrella patens","iq motif containing with aaa domain","protein_coding" "Pp1s93_123V6","No alias","Physcomitrella patens","chromodomain-helicase-dna-binding protein","protein_coding" "Pp1s99_12V6","No alias","Physcomitrella patens","cell division control protein 15","protein_coding" "PSME_00000075-RA","No alias","Pseudotsuga menziesii","(at5g66150 : 247.0) Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 494.0) & (original description: no original description)","protein_coding" "PSME_00000109-RA","No alias","Pseudotsuga menziesii","(at4g14970 : 286.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; Has 257 Blast hits to 164 proteins in 70 species: Archae - 0; Bacteria - 4; Metazoa - 189; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). & (reliability: 572.0) & (original description: no original description)","protein_coding" "PSME_00000637-RA","No alias","Pseudotsuga menziesii","(at3g20780 : 142.0) Encodes putative eukaryotic homolog of archaebacterial topoisomerase VI subunit B, TOP6B. Is essential for endoreduplication and is involved in cell expansion and cell proliferation.; topoisomerase 6 subunit B (TOP6B); CONTAINS InterPro DOMAIN/s: DNA topoisomerase VI, subunit B, transducer (InterPro:IPR015320), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Ribosomal protein S5 domain 2-type fold, subgroup (InterPro:IPR014721), ATPase-like, ATP-binding domain (InterPro:IPR003594); Has 873 Blast hits to 542 proteins in 165 species: Archae - 495; Bacteria - 44; Metazoa - 2; Fungi - 2; Plants - 34; Viruses - 0; Other Eukaryotes - 296 (source: NCBI BLink). & (reliability: 284.0) & (original description: no original description)","protein_coding" "PSME_00001338-RA","No alias","Pseudotsuga menziesii","(at4g04350 : 754.0) EMBRYO DEFECTIVE 2369 (EMB2369); FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, leucine-tRNA ligase activity, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial (InterPro:IPR002302), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (InterPro:IPR013155), Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing (InterPro:IPR009008), Aminoacyl-tRNA synthetase, class Ia (InterPro:IPR002300), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080); BEST Arabidopsis thaliana protein match is: tRNA synthetase class I (I, L, M and V) family protein (TAIR:AT5G49030.1); Has 40727 Blast hits to 36917 proteins in 3154 species: Archae - 1372; Bacteria - 23600; Metazoa - 846; Fungi - 790; Plants - 334; Viruses - 3; Other Eukaryotes - 13782 (source: NCBI BLink). & (reliability: 1508.0) & (original description: no original description)","protein_coding" "PSME_00001722-RA","No alias","Pseudotsuga menziesii","(at1g09910 : 793.0) Rhamnogalacturonate lyase family protein; FUNCTIONS IN: lyase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09890.1); Has 300 Blast hits to 279 proteins in 59 species: Archae - 0; Bacteria - 45; Metazoa - 0; Fungi - 84; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 1586.0) & (original description: no original description)","protein_coding" "PSME_00001934-RA","No alias","Pseudotsuga menziesii","(at5g16000 : 165.0) NSP-interacting kinase (NIK1), receptor-like kinase, involved in defense response against geminivirus It acts as a virulence target of the begomovirus nuclear shuttle protein (NSP).; NSP-interacting kinase 1 (NIK1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: NSP-interacting kinase 2 (TAIR:AT3G25560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q8lpb4|pskr_dauca : 85.5) Phytosulfokine receptor precursor (EC 2.7.11.1) (Phytosulfokine LRR receptor kinase) - Daucus carota (Carrot) & (reliability: 318.0) & (original description: no original description)","protein_coding" "PSME_00002411-RA","No alias","Pseudotsuga menziesii","(at1g78690 : 315.0) Phospholipid/glycerol acyltransferase family protein; FUNCTIONS IN: acyltransferase activity; INVOLVED IN: metabolic process; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123), Tafazzin (InterPro:IPR000872); BEST Arabidopsis thaliana protein match is: Phospholipid/glycerol acyltransferase family protein (TAIR:AT3G05510.2); Has 1059 Blast hits to 1041 proteins in 400 species: Archae - 0; Bacteria - 447; Metazoa - 249; Fungi - 138; Plants - 116; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink). & (reliability: 630.0) & (original description: no original description)","protein_coding" "PSME_00002809-RA","No alias","Pseudotsuga menziesii","(at2g03780 : 174.0) Translin family protein; FUNCTIONS IN: sequence-specific DNA binding, DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translin, C-terminal (InterPro:IPR016069), Translin (InterPro:IPR002848), Translin, N-terminal (InterPro:IPR016068); Has 561 Blast hits to 561 proteins in 195 species: Archae - 92; Bacteria - 2; Metazoa - 209; Fungi - 153; Plants - 36; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). & (reliability: 348.0) & (original description: no original description)","protein_coding" "PSME_00002975-RA","No alias","Pseudotsuga menziesii","(q5kqn0|cax2_orysa : 504.0) Vacuolar cation/proton exchanger 2 (Ca(2+)/H(+) exchanger 2) (OsCAX2) - Oryza sativa (Rice) & (at1g55730 : 493.0) member of Low affinity calcium antiporter CAX2 family; cation exchanger 5 (CAX5); FUNCTIONS IN: cation:cation antiporter activity, calcium:cation antiporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837), Calcium/proton exchanger superfamily (InterPro:IPR004798), Calcium/proton exchanger (InterPro:IPR004713); BEST Arabidopsis thaliana protein match is: cation exchanger 2 (TAIR:AT3G13320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 986.0) & (original description: no original description)","protein_coding" "PSME_00002997-RA","No alias","Pseudotsuga menziesii","(at3g09100 : 725.0) mRNA capping enzyme family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422), ATP dependent DNA ligase, central (InterPro:IPR012310), mRNA capping enzyme (InterPro:IPR001339), mRNA capping enzyme, bifunctional (InterPro:IPR017074), Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), mRNA capping enzyme, C-terminal (InterPro:IPR013846); BEST Arabidopsis thaliana protein match is: mRNA capping enzyme family protein (TAIR:AT5G01290.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1384.0) & (original description: no original description)","protein_coding" "PSME_00004057-RA","No alias","Pseudotsuga menziesii","(at1g11890 : 139.0) member of SEC22 Gene Family; SECRETION 22 (SEC22); FUNCTIONS IN: transporter activity; INVOLVED IN: transport, vesicle-mediated transport; LOCATED IN: Golgi apparatus, endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT5G52270.1); Has 1577 Blast hits to 1577 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 548; Fungi - 342; Plants - 449; Viruses - 0; Other Eukaryotes - 238 (source: NCBI BLink). & (reliability: 278.0) & (original description: no original description)","protein_coding" "PSME_00004396-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00004497-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00004501-RA","No alias","Pseudotsuga menziesii","(at1g09740 : 107.0) Adenine nucleotide alpha hydrolases-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Universal stress protein A (InterPro:IPR006015); BEST Arabidopsis thaliana protein match is: Adenine nucleotide alpha hydrolases-like superfamily protein (TAIR:AT3G11930.1); Has 5950 Blast hits to 5719 proteins in 1218 species: Archae - 487; Bacteria - 4382; Metazoa - 139; Fungi - 81; Plants - 701; Viruses - 0; Other Eukaryotes - 160 (source: NCBI BLink). & (reliability: 214.0) & (original description: no original description)","protein_coding" "PSME_00004628-RA","No alias","Pseudotsuga menziesii","(at2g07680 : 286.0) member of MRP subfamily; multidrug resistance-associated protein 11 (MRP11); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 2 (TAIR:AT2G34660.2); Has 539195 Blast hits to 324792 proteins in 3896 species: Archae - 9326; Bacteria - 437824; Metazoa - 12258; Fungi - 6863; Plants - 5577; Viruses - 6; Other Eukaryotes - 67341 (source: NCBI BLink). & (reliability: 572.0) & (original description: no original description)","protein_coding" "PSME_00004630-RA","No alias","Pseudotsuga menziesii","(at1g16970 : 99.0) Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity.; KU70 homolog (KU70); FUNCTIONS IN: double-stranded DNA binding, protein binding; INVOLVED IN: DNA repair, response to heat, telomere maintenance; LOCATED IN: nucleus, DNA-dependent protein kinase-DNA ligase 4 complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ku70/Ku80, N-terminal alpha/beta (InterPro:IPR005161), DNA-binding SAP (InterPro:IPR003034), DNA helicase, ATP-dependent, Ku type (InterPro:IPR006164), Spen Paralogue and Orthologue SPOC, C-terminal-like (InterPro:IPR016194), Ku70/Ku80 C-terminal arm (InterPro:IPR005160), DNA helicase, ATP-dependent, Ku70 subunit (InterPro:IPR006165); Has 475 Blast hits to 466 proteins in 181 species: Archae - 0; Bacteria - 6; Metazoa - 182; Fungi - 177; Plants - 52; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). & (reliability: 198.0) & (original description: no original description)","protein_coding" "PSME_00004957-RA","No alias","Pseudotsuga menziesii","(at1g52260 : 271.0) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin).; PDI-like 1-5 (PDIL1-5); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 1-6 (TAIR:AT3G16110.1); Has 7766 Blast hits to 5561 proteins in 1053 species: Archae - 57; Bacteria - 1627; Metazoa - 2683; Fungi - 819; Plants - 1099; Viruses - 1; Other Eukaryotes - 1480 (source: NCBI BLink). & (q43116|pdi_ricco : 81.6) Protein disulfide-isomerase precursor (EC 5.3.4.1) (PDI) - Ricinus communis (Castor bean) & (reliability: 542.0) & (original description: no original description)","protein_coding" "PSME_00005101-RA","No alias","Pseudotsuga menziesii","(at1g50320 : 88.2) encodes a prokaryotic thioredoxin; thioredoxin X (THX); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: positive regulation of catalytic activity; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin Y1 (TAIR:AT1G76760.1); Has 20779 Blast hits to 19654 proteins in 2968 species: Archae - 276; Bacteria - 11383; Metazoa - 2412; Fungi - 1075; Plants - 1697; Viruses - 7; Other Eukaryotes - 3929 (source: NCBI BLink). & (reliability: 176.4) & (original description: no original description)","protein_coding" "PSME_00005333-RA","No alias","Pseudotsuga menziesii","(at5g20590 : 265.0) Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).; TRICHOME BIREFRINGENCE-LIKE 5 (TBL5); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT1G60790.1); Has 1351 Blast hits to 1334 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1350; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 530.0) & (original description: no original description)","protein_coding" "PSME_00005407-RA","No alias","Pseudotsuga menziesii","(at3g63000 : 543.0) NPL4-like protein 1 (NPL41); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NPL4 (InterPro:IPR007717); BEST Arabidopsis thaliana protein match is: Nuclear pore localisation protein NPL4 (TAIR:AT2G47970.1); Has 398 Blast hits to 398 proteins in 186 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 123; Plants - 67; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). & (q9as33|npl4_orysa : 434.0) NPL4-like protein - Oryza sativa (Rice) & (reliability: 1086.0) & (original description: no original description)","protein_coding" "PSME_00005491-RA","No alias","Pseudotsuga menziesii","(at1g51710 : 557.0) Ubiquitin-specific protease 6 (UBP6). Deubiquinating enzyme. Interacts with calmodulin.; ubiquitin-specific protease 6 (UBP6); CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 7 (TAIR:AT3G21280.1); Has 4803 Blast hits to 4486 proteins in 237 species: Archae - 0; Bacteria - 0; Metazoa - 2534; Fungi - 849; Plants - 654; Viruses - 2; Other Eukaryotes - 764 (source: NCBI BLink). & (reliability: 1114.0) & (original description: no original description)","protein_coding" "PSME_00005604-RA","No alias","Pseudotsuga menziesii","(at5g65010 : 620.0) Encodes asparagine synthetase (ASN2).; asparagine synthetase 2 (ASN2); FUNCTIONS IN: asparagine synthase (glutamine-hydrolyzing) activity; INVOLVED IN: asparagine biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Asparagine synthase (InterPro:IPR001962), Asparagine synthase, glutamine-hydrolyzing (InterPro:IPR006426), Glutamine amidotransferase, type II (InterPro:IPR017932); BEST Arabidopsis thaliana protein match is: asparagine synthetase 3 (TAIR:AT5G10240.1); Has 12646 Blast hits to 12280 proteins in 2301 species: Archae - 400; Bacteria - 7857; Metazoa - 213; Fungi - 272; Plants - 420; Viruses - 7; Other Eukaryotes - 3477 (source: NCBI BLink). & (p31752|asns_aspof : 607.0) Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) (AS) - Asparagus officinalis (Garden asparagus) & (reliability: 1240.0) & (original description: no original description)","protein_coding" "PSME_00005786-RA","No alias","Pseudotsuga menziesii",""(at5g57110 : 380.0) Arabidopsis-autoinhibited Ca2+ -ATPase, isoform 8, contains all of the characteristic motifs of Ca2+ -transporting P-type Ca2+ -ATPases and is localized to the plasma membrane.; ""autoinhibited Ca2+ -ATPase, isoform 8"" (ACA8); FUNCTIONS IN: protein self-association, calcium-transporting ATPase activity, calmodulin binding; INVOLVED IN: response to nematode; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068), ATPase, P-type phosphorylation site (InterPro:IPR018303); BEST Arabidopsis thaliana protein match is: autoinhibited Ca(2+)-ATPase 10 (TAIR:AT4G29900.1); Has 45517 Blast hits to 34552 proteins in 3221 species: Archae - 872; Bacteria - 31142; Metazoa - 4022; Fungi - 2709; Plants - 2112; Viruses - 3; Other Eukaryotes - 4657 (source: NCBI BLink). & (q2qmx9|aca1_orysa : 258.0) Calcium-transporting ATPase 1, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope ATPase 1) - Oryza sativa (Rice) & (reliability: 744.0) & (original description: no original description)"","protein_coding" "PSME_00006024-RA","No alias","Pseudotsuga menziesii","(at2g41040 : 214.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: response to karrikin; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G78140.1); Has 8121 Blast hits to 8118 proteins in 1828 species: Archae - 365; Bacteria - 6420; Metazoa - 92; Fungi - 271; Plants - 324; Viruses - 0; Other Eukaryotes - 649 (source: NCBI BLink). & (reliability: 428.0) & (original description: no original description)","protein_coding" "PSME_00006470-RA","No alias","Pseudotsuga menziesii","(at2g05830 : 418.0) NagB/RpiA/CoA transferase-like superfamily protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: cellular biosynthetic process, translational initiation, cellular metabolic process; LOCATED IN: endomembrane system, eukaryotic translation initiation factor 2B complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase (InterPro:IPR005251), Initiation factor 2B related (InterPro:IPR000649), Initiation factor 2B alpha/beta/delta (InterPro:IPR011559); BEST Arabidopsis thaliana protein match is: NagB/RpiA/CoA transferase-like superfamily protein (TAIR:AT3G07300.3); Has 4761 Blast hits to 4761 proteins in 1019 species: Archae - 363; Bacteria - 1753; Metazoa - 515; Fungi - 379; Plants - 224; Viruses - 0; Other Eukaryotes - 1527 (source: NCBI BLink). & (reliability: 836.0) & (original description: no original description)","protein_coding" "PSME_00006484-RA","No alias","Pseudotsuga menziesii","(at3g57430 : 393.0) Encodes a chloroplast RNA editing factor.; ORGANELLE TRANSCRIPT PROCESSING 84 (OTP84); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G11290.1); Has 46517 Blast hits to 13331 proteins in 240 species: Archae - 0; Bacteria - 7; Metazoa - 55; Fungi - 91; Plants - 45789; Viruses - 0; Other Eukaryotes - 575 (source: NCBI BLink). & (q76c99|rf1_orysa : 122.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 740.0) & (original description: no original description)","protein_coding" "PSME_00006561-RA","No alias","Pseudotsuga menziesii","(at4g30990 : 1546.0) ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: Golgi apparatus; CONTAINS InterPro DOMAIN/s: Down-regulated-in-metastasis protein (InterPro:IPR011430), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G36722.1); Has 688 Blast hits to 408 proteins in 187 species: Archae - 0; Bacteria - 2; Metazoa - 220; Fungi - 235; Plants - 93; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink). & (reliability: 3092.0) & (original description: no original description)","protein_coding" "PSME_00006629-RA","No alias","Pseudotsuga menziesii","(at2g41670 : 278.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G10650.1); Has 3980 Blast hits to 3980 proteins in 1445 species: Archae - 109; Bacteria - 2376; Metazoa - 398; Fungi - 429; Plants - 195; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink). & (reliability: 556.0) & (original description: no original description)","protein_coding" "PSME_00006683-RA","No alias","Pseudotsuga menziesii","(p28002|comt1_medsa : 441.0) Caffeic acid 3-O-methyltransferase (EC 2.1.1.68) (S-adenosysl-L-methionine:caffeic acid 3-O-methyltransferase) (COMT) (CAOMT) - Medicago sativa (Alfalfa) & (at5g54160 : 426.0) A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3í-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3í-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase; O-methyltransferase 1 (OMT1); FUNCTIONS IN: myricetin 3'-O-methyltransferase activity, quercetin 3-O-methyltransferase activity, caffeate O-methyltransferase activity; INVOLVED IN: lignin biosynthetic process, flavonol biosynthetic process; LOCATED IN: cytosol, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G77520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 852.0) & (original description: no original description)","protein_coding" "PSME_00006816-RA","No alias","Pseudotsuga menziesii","(at5g08470 : 573.0) an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals.; peroxisome 1 (PEX1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation, response to stress; LOCATED IN: peroxisome; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Aspartate decarboxylase-like fold (InterPro:IPR009010), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peroxisome biogenesis factor 1, N-terminal (InterPro:IPR015342); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 45022 Blast hits to 26157 proteins in 3042 species: Archae - 1897; Bacteria - 15808; Metazoa - 7500; Fungi - 5597; Plants - 4311; Viruses - 29; Other Eukaryotes - 9880 (source: NCBI BLink). & (p54774|cdc48_soybn : 172.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1146.0) & (original description: no original description)","protein_coding" "PSME_00006888-RA","No alias","Pseudotsuga menziesii","(at1g48050 : 397.0) Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. Binds double stranded DNA breaks as a heterodimer with Ku70, involved in non-homologous end joining repair. Mutants are defective in T-DNA integration. Over expression confers increased resistance to DNA damage agents and increased susceptibility to T-DNA transformation.; KU80; FUNCTIONS IN: double-stranded DNA binding, protein binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ku70/Ku80, N-terminal alpha/beta (InterPro:IPR005161), DNA helicase, ATP-dependent, Ku type (InterPro:IPR006164), Spen Paralogue and Orthologue SPOC, C-terminal-like (InterPro:IPR016194), Ku70/Ku80 C-terminal arm (InterPro:IPR005160), Ku, C-terminal (InterPro:IPR014893); Has 786 Blast hits to 750 proteins in 217 species: Archae - 0; Bacteria - 40; Metazoa - 246; Fungi - 345; Plants - 62; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink). & (reliability: 794.0) & (original description: no original description)","protein_coding" "PSME_00007503-RA","No alias","Pseudotsuga menziesii","(at1g74910 : 292.0) ADP-glucose pyrophosphorylase family protein; FUNCTIONS IN: transferase activity, nucleotidyltransferase activity; INVOLVED IN: response to cadmium ion, biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: ADP-glucose pyrophosphorylase family protein (TAIR:AT2G04650.1); Has 8747 Blast hits to 8740 proteins in 1996 species: Archae - 635; Bacteria - 5603; Metazoa - 382; Fungi - 295; Plants - 426; Viruses - 0; Other Eukaryotes - 1406 (source: NCBI BLink). & (reliability: 584.0) & (original description: no original description)","protein_coding" "PSME_00008382-RA","No alias","Pseudotsuga menziesii","(at2g23760 : 302.0) Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw2 and saw1 may act redundantly to repress BP in leaves.; BEL1-like homeodomain 4 (BLH4); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: leaf morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Homeobox KN domain (InterPro:IPR008422), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 2 (TAIR:AT4G36870.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 604.0) & (original description: no original description)","protein_coding" "PSME_00009132-RA","No alias","Pseudotsuga menziesii","(at1g48050 : 429.0) Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. Binds double stranded DNA breaks as a heterodimer with Ku70, involved in non-homologous end joining repair. Mutants are defective in T-DNA integration. Over expression confers increased resistance to DNA damage agents and increased susceptibility to T-DNA transformation.; KU80; FUNCTIONS IN: double-stranded DNA binding, protein binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ku70/Ku80, N-terminal alpha/beta (InterPro:IPR005161), DNA helicase, ATP-dependent, Ku type (InterPro:IPR006164), Spen Paralogue and Orthologue SPOC, C-terminal-like (InterPro:IPR016194), Ku70/Ku80 C-terminal arm (InterPro:IPR005160), Ku, C-terminal (InterPro:IPR014893); Has 786 Blast hits to 750 proteins in 217 species: Archae - 0; Bacteria - 40; Metazoa - 246; Fungi - 345; Plants - 62; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink). & (reliability: 858.0) & (original description: no original description)","protein_coding" "PSME_00009133-RA","No alias","Pseudotsuga menziesii","(at1g48050 : 180.0) Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. Binds double stranded DNA breaks as a heterodimer with Ku70, involved in non-homologous end joining repair. Mutants are defective in T-DNA integration. Over expression confers increased resistance to DNA damage agents and increased susceptibility to T-DNA transformation.; KU80; FUNCTIONS IN: double-stranded DNA binding, protein binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ku70/Ku80, N-terminal alpha/beta (InterPro:IPR005161), DNA helicase, ATP-dependent, Ku type (InterPro:IPR006164), Spen Paralogue and Orthologue SPOC, C-terminal-like (InterPro:IPR016194), Ku70/Ku80 C-terminal arm (InterPro:IPR005160), Ku, C-terminal (InterPro:IPR014893); Has 786 Blast hits to 750 proteins in 217 species: Archae - 0; Bacteria - 40; Metazoa - 246; Fungi - 345; Plants - 62; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink). & (reliability: 360.0) & (original description: no original description)","protein_coding" "PSME_00009134-RA","No alias","Pseudotsuga menziesii","(at1g48050 : 325.0) Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. Binds double stranded DNA breaks as a heterodimer with Ku70, involved in non-homologous end joining repair. Mutants are defective in T-DNA integration. Over expression confers increased resistance to DNA damage agents and increased susceptibility to T-DNA transformation.; KU80; FUNCTIONS IN: double-stranded DNA binding, protein binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ku70/Ku80, N-terminal alpha/beta (InterPro:IPR005161), DNA helicase, ATP-dependent, Ku type (InterPro:IPR006164), Spen Paralogue and Orthologue SPOC, C-terminal-like (InterPro:IPR016194), Ku70/Ku80 C-terminal arm (InterPro:IPR005160), Ku, C-terminal (InterPro:IPR014893); Has 786 Blast hits to 750 proteins in 217 species: Archae - 0; Bacteria - 40; Metazoa - 246; Fungi - 345; Plants - 62; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink). & (reliability: 650.0) & (original description: no original description)","protein_coding" "PSME_00009135-RA","No alias","Pseudotsuga menziesii","(at1g48050 : 87.8) Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. Binds double stranded DNA breaks as a heterodimer with Ku70, involved in non-homologous end joining repair. Mutants are defective in T-DNA integration. Over expression confers increased resistance to DNA damage agents and increased susceptibility to T-DNA transformation.; KU80; FUNCTIONS IN: double-stranded DNA binding, protein binding; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ku70/Ku80, N-terminal alpha/beta (InterPro:IPR005161), DNA helicase, ATP-dependent, Ku type (InterPro:IPR006164), Spen Paralogue and Orthologue SPOC, C-terminal-like (InterPro:IPR016194), Ku70/Ku80 C-terminal arm (InterPro:IPR005160), Ku, C-terminal (InterPro:IPR014893); Has 786 Blast hits to 750 proteins in 217 species: Archae - 0; Bacteria - 40; Metazoa - 246; Fungi - 345; Plants - 62; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink). & (reliability: 175.6) & (original description: no original description)","protein_coding" "PSME_00009281-RA","No alias","Pseudotsuga menziesii","(q41062|seca_pea : 517.0) Preprotein translocase secA subunit, chloroplast precursor - Pisum sativum (Garden pea) & (at4g01800 : 498.0) Encodes the ATPase subunit of the chloroplast Sec translocation machinery which plays an essential role in chloroplast biogenesis and the regulation of photosynthesis, the absence of which triggers a retrograde signal, eventually leading to a reprogramming of chloroplast and mitochondrial gene expression.; Albino or Glassy Yellow 1 (AGY1); FUNCTIONS IN: ATPase activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity, ATP binding; INVOLVED IN: in 6 processes; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SecA, preprotein translocase (InterPro:IPR022491), SecA motor DEAD (InterPro:IPR014018), SecA Wing/Scaffold (InterPro:IPR011116), SecA preprotein, cross-linking domain (InterPro:IPR011130), SecA DEAD-like (InterPro:IPR011115), SecA conserved site (InterPro:IPR020937), SecA protein (InterPro:IPR000185); BEST Arabidopsis thaliana protein match is: Preprotein translocase SecA family protein (TAIR:AT1G21650.1). & (reliability: 996.0) & (original description: no original description)","protein_coding" "PSME_00009541-RA","No alias","Pseudotsuga menziesii","(at2g31060 : 580.0) elongation factor family protein; FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP-binding protein TypA (InterPro:IPR006298), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFG/EF2, C-terminal (InterPro:IPR000640), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Elongation factor G/III/V (InterPro:IPR009022), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: elongation factor family protein (TAIR:AT5G13650.2). & (reliability: 1160.0) & (original description: no original description)","protein_coding" "PSME_00009568-RA","No alias","Pseudotsuga menziesii","(q40762|phy_picab : 1571.0) Phytochrome - Picea abies (Norway spruce) (Picea excelsa) & (at1g09570 : 1381.0) Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation.; phytochrome A (PHYA); CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome B (TAIR:AT2G18790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 2762.0) & (original description: no original description)","protein_coding" "PSME_00009788-RA","No alias","Pseudotsuga menziesii","(at3g54670 : 223.0) Encodes a member of the Arabidopsis cohesin complex that is essential for viability and sister chromatid alignment.; TITAN8 (TTN8); CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosome 3 (TAIR:AT5G48600.1). & (reliability: 446.0) & (original description: no original description)","protein_coding" "PSME_00010528-RA","No alias","Pseudotsuga menziesii","(at5g07920 : 283.0) diacylglycerol kinase; diacylglycerol kinase1 (DGK1); FUNCTIONS IN: diacylglycerol kinase activity, calcium ion binding; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway, intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Diacylglycerol kinase, catalytic domain (InterPro:IPR001206), Diacylglycerol kinase, accessory domain (InterPro:IPR000756); BEST Arabidopsis thaliana protein match is: diacylglycerol kinase 2 (TAIR:AT5G63770.1); Has 2279 Blast hits to 1631 proteins in 306 species: Archae - 0; Bacteria - 350; Metazoa - 1446; Fungi - 0; Plants - 254; Viruses - 0; Other Eukaryotes - 229 (source: NCBI BLink). & (reliability: 566.0) & (original description: no original description)","protein_coding" "PSME_00010583-RA","No alias","Pseudotsuga menziesii","(at1g49670 : 466.0) molecular function has not been defined. Was shown involved in oxidative stress tolerance.; NQR; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: response to oxidative stress, metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198), GroES-like (InterPro:IPR011032), Polyketide synthase, enoylreductase (InterPro:IPR020843), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Quinone oxidoreductase/zeta-crystallin, conserved site (InterPro:IPR002364), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Zinc-binding dehydrogenase family protein (TAIR:AT5G37980.1). & (reliability: 932.0) & (original description: no original description)","protein_coding" "PSME_00010686-RA","No alias","Pseudotsuga menziesii","(p48489|pp1_orysa : 489.0) Serine/threonine-protein phosphatase PP1 (EC 3.1.3.16) - Oryza sativa (Rice) & (at2g39840 : 484.0) Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.; type one serine/threonine protein phosphatase 4 (TOPP4); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: type one serine/threonine protein phosphatase 2 (TAIR:AT5G59160.3); Has 7176 Blast hits to 6978 proteins in 618 species: Archae - 78; Bacteria - 533; Metazoa - 2415; Fungi - 1410; Plants - 987; Viruses - 16; Other Eukaryotes - 1737 (source: NCBI BLink). & (reliability: 968.0) & (original description: no original description)","protein_coding" "PSME_00010999-RA","No alias","Pseudotsuga menziesii","(at2g39260 : 507.0) binding;RNA binding; FUNCTIONS IN: RNA binding, binding; INVOLVED IN: translation, RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), Up-frameshift suppressor 2 (InterPro:IPR007193), MIF4-like, type 1/2/3 (InterPro:IPR016021); Has 8683 Blast hits to 5464 proteins in 545 species: Archae - 34; Bacteria - 610; Metazoa - 3010; Fungi - 1047; Plants - 271; Viruses - 134; Other Eukaryotes - 3577 (source: NCBI BLink). & (reliability: 1014.0) & (original description: no original description)","protein_coding" "PSME_00011014-RA","No alias","Pseudotsuga menziesii","(at4g10930 : 315.0) unknown protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 630.0) & (original description: no original description)","protein_coding" "PSME_00011478-RA","No alias","Pseudotsuga menziesii","(at1g03430 : 86.3) Encodes AHP5, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).; histidine-containing phosphotransfer factor 5 (AHP5); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) domain (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: histidine-containing phosphotransmitter 2 (TAIR:AT3G29350.1); Has 311 Blast hits to 310 proteins in 49 species: Archae - 2; Bacteria - 33; Metazoa - 0; Fungi - 8; Plants - 266; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). & (reliability: 172.6) & (original description: no original description)","protein_coding" "PSME_00011612-RA","No alias","Pseudotsuga menziesii","(at3g15180 : 184.0) ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), 26S proteasome non-ATPase regulatory subunit 5 (InterPro:IPR019538). & (reliability: 368.0) & (original description: no original description)","protein_coding" "PSME_00013780-RA","No alias","Pseudotsuga menziesii","(at3g62220 : 338.0) Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G47060.4); Has 114745 Blast hits to 113433 proteins in 4682 species: Archae - 113; Bacteria - 13563; Metazoa - 42319; Fungi - 9347; Plants - 32428; Viruses - 387; Other Eukaryotes - 16588 (source: NCBI BLink). & (q8lkz1|nork_pea : 147.0) Nodulation receptor kinase precursor (EC 2.7.11.1) - Pisum sativum (Garden pea) & (reliability: 676.0) & (original description: no original description)","protein_coding" "PSME_00013825-RA","No alias","Pseudotsuga menziesii","(at4g13930 : 152.0) Encodes a serine hydroxymethyltransferase maximally expressed in root; serine hydroxymethyltransferase 4 (SHM4); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: response to cadmium ion, glycine metabolic process, L-serine metabolic process; LOCATED IN: cytosol, plasma membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT4G13890.1); Has 11689 Blast hits to 11661 proteins in 2862 species: Archae - 259; Bacteria - 6437; Metazoa - 341; Fungi - 289; Plants - 375; Viruses - 6; Other Eukaryotes - 3982 (source: NCBI BLink). & (p34899|glym_pea : 84.0) Serine hydroxymethyltransferase, mitochondrial precursor (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) - Pisum sativum (Garden pea) & (reliability: 304.0) & (original description: no original description)","protein_coding" "PSME_00014378-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00014493-RA","No alias","Pseudotsuga menziesii","(at1g35720 : 354.0) Encodes a member of the annexin gene family, a diverse, multigene family of calcium-dependent, membrane-binding proteins. The protein was determined to have peroxidase activity. This activity is thought to be dependent on the presence of post-translational modifications (most likely phosphorylation). The protein was shown to be present as a mixture of monomer and homodimer. The homodimerization seems to be dependent on the presence of Ca2+ or H2O2. The dimerization was prevented by the addition of DTT, β-mercaptoethanol and TCEP. Annat1 mRNA is expressed in flowers, roots,leaves and stems and is most abundant in stems. mRNA levels are increased in response to oxidative stress. Developmental expression patterns suggest a role in Golgi-mediated polysaccharide secretion.; annexin 1 (ANNAT1); FUNCTIONS IN: in 7 functions; INVOLVED IN: in 8 processes; LOCATED IN: in 10 components; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Annexin like protein (InterPro:IPR015472), Annexin repeat (InterPro:IPR018502), Annexin repeat, conserved site (InterPro:IPR018252), Annexin (InterPro:IPR001464), Annexin, type plant (InterPro:IPR009118); BEST Arabidopsis thaliana protein match is: annexin 2 (TAIR:AT5G65020.1); Has 3809 Blast hits to 2217 proteins in 205 species: Archae - 0; Bacteria - 0; Metazoa - 2893; Fungi - 160; Plants - 482; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink). & (p51074|anx4_fraan : 346.0) Annexin-like protein RJ4 - Fragaria ananassa (Strawberry) & (reliability: 708.0) & (original description: no original description)","protein_coding" "PSME_00015189-RA","No alias","Pseudotsuga menziesii","(at1g10970 : 316.0) A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficiency is detected only after three weeks of deficiency.; zinc transporter 4 precursor (ZIP4); CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: iron regulated transporter 3 (TAIR:AT1G60960.1); Has 2241 Blast hits to 2085 proteins in 351 species: Archae - 0; Bacteria - 278; Metazoa - 580; Fungi - 588; Plants - 521; Viruses - 0; Other Eukaryotes - 274 (source: NCBI BLink). & (reliability: 632.0) & (original description: no original description)","protein_coding" "PSME_00015448-RA","No alias","Pseudotsuga menziesii","(at1g50500 : 126.0) encodes a member of VPS53 family protein involved in the retrograde trafficking of vesicles to the late Golgi. Mutants in this gene are more sensitive to heat and osmotic stress.; HEAT-INTOLERANT 1 (HIT1); CONTAINS InterPro DOMAIN/s: Vps53-like, N-terminal (InterPro:IPR007234); BEST Arabidopsis thaliana protein match is: Membrane trafficking VPS53 family protein (TAIR:AT1G50970.1). & (reliability: 252.0) & (original description: no original description)","protein_coding" "PSME_00015981-RA","No alias","Pseudotsuga menziesii","(at5g60790 : 892.0) member of GCN subfamily; GENERAL CONTROL NON-REPRESSIBLE 1 (GCN1); FUNCTIONS IN: transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: general control non-repressible 3 (TAIR:AT1G64550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1784.0) & (original description: no original description)","protein_coding" "PSME_00016275-RA","No alias","Pseudotsuga menziesii","(at3g16170 : 152.0) AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity, AMP binding; INVOLVED IN: metabolic process; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT3G48990.1); Has 81919 Blast hits to 74550 proteins in 3809 species: Archae - 1169; Bacteria - 53765; Metazoa - 3235; Fungi - 4485; Plants - 2227; Viruses - 1; Other Eukaryotes - 17037 (source: NCBI BLink). & (reliability: 304.0) & (original description: no original description)","protein_coding" "PSME_00016798-RA","No alias","Pseudotsuga menziesii","(at2g41460 : 339.0) apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair.; apurinic endonuclease-redox protein (ARP); CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), AP endonuclease, family 1, binding site (InterPro:IPR020847), Exodeoxyribonuclease III xth (InterPro:IPR004808), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (TAIR:AT3G60950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p51173|apea_dicdi : 178.0) DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) (Class II apurinic/apyrimidinic(AP)-endonuclease) - Dictyostelium discoideum (Slime mold) & (reliability: 678.0) & (original description: no original description)","protein_coding" "PSME_00018348-RA","No alias","Pseudotsuga menziesii","(at5g40380 : 192.0) Encodes a cysteine-rich receptor-like protein kinase.; cysteine-rich RLK (RECEPTOR-like protein kinase) 42 (CRK42); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (TAIR:AT1G70530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q8l4h4|nork_medtr : 113.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 366.0) & (original description: no original description)","protein_coding" "PSME_00019333-RA","No alias","Pseudotsuga menziesii","(at2g42220 : 165.0) Rhodanese/Cell cycle control phosphatase superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT3G08920.1); Has 955 Blast hits to 955 proteins in 207 species: Archae - 14; Bacteria - 343; Metazoa - 1; Fungi - 0; Plants - 204; Viruses - 0; Other Eukaryotes - 393 (source: NCBI BLink). & (reliability: 330.0) & (original description: no original description)","protein_coding" "PSME_00019980-RA","No alias","Pseudotsuga menziesii","(at3g07130 : 251.0) Encodes PAP15, a purple acid phosphatase with phytase activity. Expression of PAP15 is developmentally and temporally regulated, with strong expression at the early stages of seedling growth and pollen germination. The expression is also organ/tissue-specific, with strongest expression in the vasculature, pollen grains, and roots. Recombinant PAP protein exhibits broad substrate specificity with moderate phytase activity. PAP15 likely mobilizes phosphorus reserves in plants, particularly during seed and pollen germination.; purple acid phosphatase 15 (PAP15); FUNCTIONS IN: protein serine/threonine phosphatase activity, acid phosphatase activity; INVOLVED IN: pollen germination, seed germination; LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: seedling growth, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Purple acid phosphatase, N-terminal (InterPro:IPR015914), Metallophosphoesterase (InterPro:IPR004843), Purple acid phosphatase-like, N-terminal (InterPro:IPR008963); BEST Arabidopsis thaliana protein match is: purple acid phosphatase 13 (TAIR:AT2G32770.3); Has 2322 Blast hits to 2305 proteins in 472 species: Archae - 7; Bacteria - 914; Metazoa - 228; Fungi - 75; Plants - 768; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink). & (q09131|ppaf_soybn : 112.0) Purple acid phosphatase precursor (EC 3.1.3.2) (Manganese(II) purple acid phosphatase) - Glycine max (Soybean) & (reliability: 502.0) & (original description: no original description)","protein_coding" "PSME_00020198-RA","No alias","Pseudotsuga menziesii","(at1g08130 : 117.0) Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus.; DNA ligase 1 (LIG1); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, DNA replication, DNA recombination; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059); BEST Arabidopsis thaliana protein match is: ATP-dependent DNA ligase (TAIR:AT1G49250.1); Has 3556 Blast hits to 3521 proteins in 879 species: Archae - 298; Bacteria - 1538; Metazoa - 375; Fungi - 434; Plants - 112; Viruses - 159; Other Eukaryotes - 640 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description)","protein_coding" "PSME_00020528-RA","No alias","Pseudotsuga menziesii","(at1g22280 : 369.0) Encodes a phytochrome-associated protein, PAPP2C (phytochrome-associated protein phosphatase type 2C). PAPP2C interacts in the nucleus with phyA (phytochrome A) and phyB. Functions as a regulator of phytochrome-interacting factor PIF3 by dephosphorylating phytochromes in the nucleus.; phytochrome-associated protein phosphatase type 2C (PAPP2C); CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G34750.1). & (reliability: 738.0) & (original description: no original description)","protein_coding" "PSME_00021504-RA","No alias","Pseudotsuga menziesii","(at2g29200 : 236.0) Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.; pumilio 1 (PUM1); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Nucleic acid binding NABP (InterPro:IPR012940), Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 3 (TAIR:AT2G29140.1); Has 3905 Blast hits to 1986 proteins in 235 species: Archae - 0; Bacteria - 0; Metazoa - 808; Fungi - 1312; Plants - 896; Viruses - 0; Other Eukaryotes - 889 (source: NCBI BLink). & (reliability: 472.0) & (original description: no original description)","protein_coding" "PSME_00021511-RA","No alias","Pseudotsuga menziesii","(at5g19370 : 199.0) rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein; FUNCTIONS IN: isomerase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763), Peptidyl-prolyl cis-trans isomerase, PpiC-type (InterPro:IPR000297); BEST Arabidopsis thaliana protein match is: co-factor for nitrate, reductase and xanthine dehydrogenase 5 (TAIR:AT5G55130.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 398.0) & (original description: no original description)","protein_coding" "PSME_00021744-RA","No alias","Pseudotsuga menziesii","(at3g54350 : 93.2) embryo defective 1967 (emb1967); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: Forkhead-associated (FHA) domain-containing protein (TAIR:AT1G75530.1); Has 387 Blast hits to 260 proteins in 92 species: Archae - 0; Bacteria - 0; Metazoa - 229; Fungi - 23; Plants - 94; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink). & (reliability: 186.4) & (original description: no original description)","protein_coding" "PSME_00024264-RA","No alias","Pseudotsuga menziesii","(p30924|glgb_soltu : 704.0) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Starch branching enzyme) (Q-enzyme) - Solanum tuberosum (Potato) & (at5g03650 : 557.0) Encodes starch branching enzyme (E.C.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout the plant and highest in seedlings and cauline leaves.; starch branching enzyme 2.2 (SBE2.2); FUNCTIONS IN: 1,4-alpha-glucan branching enzyme activity; INVOLVED IN: amylopectin biosynthetic process, starch metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Alpha-amylase, C-terminal all beta (InterPro:IPR006048), Immunoglobulin-like fold (InterPro:IPR013783), Glycosyl hydrolase, family 13, all-beta (InterPro:IPR013780), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: starch branching enzyme 2.1 (TAIR:AT2G36390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1114.0) & (original description: no original description)","protein_coding" "PSME_00024278-RA","No alias","Pseudotsuga menziesii","(at5g42920 : 338.0) Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.; THO5; CONTAINS InterPro DOMAIN/s: THO complex, subunit 5 (InterPro:IPR019163); BEST Arabidopsis thaliana protein match is: THO complex, subunit 5 (TAIR:AT1G45233.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 676.0) & (original description: no original description)","protein_coding" "PSME_00025569-RA","No alias","Pseudotsuga menziesii","(at1g65660 : 364.0) Encodes a CCHC zinc finger protein that may function as a step II splicing factor. In an epigenetic allele of SMP1 (in which SMP1 and SMP2 mRNA is reduced) organs are smaller and contain fewer cells.; SWELLMAP 1 (SMP1); CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Pre-mRNA splicing Prp18-interacting factor (InterPro:IPR021715); BEST Arabidopsis thaliana protein match is: Pre-mRNA splicing Prp18-interacting factor (TAIR:AT4G37120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 728.0) & (original description: no original description)","protein_coding" "PSME_00025716-RA","No alias","Pseudotsuga menziesii","(at1g28090 : 244.0) Polynucleotide adenylyltransferase family protein; FUNCTIONS IN: RNA binding, nucleotidyltransferase activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Poly A polymerase, head domain (InterPro:IPR002646); BEST Arabidopsis thaliana protein match is: Polynucleotide adenylyltransferase family protein (TAIR:AT5G23690.1); Has 9376 Blast hits to 9368 proteins in 2610 species: Archae - 2; Bacteria - 6608; Metazoa - 130; Fungi - 222; Plants - 128; Viruses - 8; Other Eukaryotes - 2278 (source: NCBI BLink). & (reliability: 488.0) & (original description: no original description)","protein_coding" "PSME_00026217-RA","No alias","Pseudotsuga menziesii","(at5g57020 : 217.0) Arabidopsis thaliana myristoyl-CoA:protein N-myristoyltransferase.; myristoyl-CoA:protein N-myristoyltransferase (NMT1); CONTAINS InterPro DOMAIN/s: Myristoyl-CoA:protein N-myristoyltransferase (InterPro:IPR000903), Myristoyl-CoA:protein N-myristoyltransferase, conserved site (InterPro:IPR022678), Myristoyl-CoA:protein N-myristoyltransferase, N-terminal (InterPro:IPR022676), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Myristoyl-CoA:protein N-myristoyltransferase, C-terminal (InterPro:IPR022677); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT2G44175.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 434.0) & (original description: no original description)","protein_coding" "PSME_00026488-RA","No alias","Pseudotsuga menziesii","(at1g69830 : 309.0) Encodes a plastid-localized α-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation. Expression follows circadian rhythms.; alpha-amylase-like 3 (AMY3); FUNCTIONS IN: alpha-amylase activity; INVOLVED IN: circadian rhythm, starch catabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047), Alpha-amylase, C-terminal beta-sheet (InterPro:IPR012850); BEST Arabidopsis thaliana protein match is: alpha-amylase-like 2 (TAIR:AT1G76130.1); Has 11240 Blast hits to 11194 proteins in 2094 species: Archae - 95; Bacteria - 8555; Metazoa - 677; Fungi - 729; Plants - 646; Viruses - 0; Other Eukaryotes - 538 (source: NCBI BLink). & (p27934|amy3e_orysa : 211.0) Alpha-amylase isozyme 3E precursor (EC 3.2.1.1) (1,4-alpha-D-glucan glucanohydrolase) - Oryza sativa (Rice) & (reliability: 618.0) & (original description: no original description)","protein_coding" "PSME_00026639-RA","No alias","Pseudotsuga menziesii","(at2g01690 : 241.0) ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Protein of unknown function DUF3434 (InterPro:IPR021841), HEAT, type 2 (InterPro:IPR021133), Armadillo-type fold (InterPro:IPR016024); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 482.0) & (original description: no original description)","protein_coding" "PSME_00027753-RA","No alias","Pseudotsuga menziesii","(at4g22930 : 374.0) Encodes dihydroorotase (PYR4).; pyrimidin 4 (PYR4); FUNCTIONS IN: dihydroorotase activity; INVOLVED IN: 'de novo' pyrimidine base biosynthetic process, pyrimidine base biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dihydroorotase, conserved site (InterPro:IPR002195), Dihydroorotase homodimeric type (InterPro:IPR004721), Amidohydrolase 1 (InterPro:IPR006680); Has 3373 Blast hits to 3371 proteins in 1108 species: Archae - 32; Bacteria - 2225; Metazoa - 2; Fungi - 146; Plants - 54; Viruses - 0; Other Eukaryotes - 914 (source: NCBI BLink). & (reliability: 748.0) & (original description: no original description)","protein_coding" "PSME_00028285-RA","No alias","Pseudotsuga menziesii","(at4g38600 : 295.0) encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.; KAKTUS (KAK); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: trichome branching, DNA endoreduplication; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 4 (TAIR:AT5G02880.1); Has 6273 Blast hits to 5534 proteins in 324 species: Archae - 2; Bacteria - 240; Metazoa - 3391; Fungi - 909; Plants - 600; Viruses - 3; Other Eukaryotes - 1128 (source: NCBI BLink). & (reliability: 590.0) & (original description: no original description)","protein_coding" "PSME_00028624-RA","No alias","Pseudotsuga menziesii","(at1g74800 : 372.0) Galactosyltransferase family protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galectin, carbohydrate recognition domain (InterPro:IPR001079), Glycosyl transferase, family 31 (InterPro:IPR002659), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Galactosyltransferase family protein (TAIR:AT5G62620.1); Has 2254 Blast hits to 2220 proteins in 111 species: Archae - 0; Bacteria - 6; Metazoa - 1612; Fungi - 6; Plants - 579; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink). & (reliability: 706.0) & (original description: no original description)","protein_coding" "PSME_00029002-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00029034-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00029324-RA","No alias","Pseudotsuga menziesii","(at3g54440 : 298.0) glycoside hydrolase family 2 protein; FUNCTIONS IN: carbohydrate binding, cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: male gametophyte, guard cell; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich (InterPro:IPR006102), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 42, domain 5 (InterPro:IPR004199), Glycoside hydrolase family 2, TIM barrel (InterPro:IPR006103), Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase, family 2 (InterPro:IPR006101), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Galactose-binding domain-like (InterPro:IPR008979), Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain (InterPro:IPR013812), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781). & (reliability: 596.0) & (original description: no original description)","protein_coding" "PSME_00029868-RA","No alias","Pseudotsuga menziesii","(at2g47980 : 519.0) Essential to the monopolar orientation of the kinetochores during meiosis.; sister-chromatid cohesion protein 3 (SCC3); FUNCTIONS IN: binding; INVOLVED IN: mitosis, attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation, meiotic sister chromatid cohesion, centromeric; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), STAG (InterPro:IPR013721), Stromalin conservative domain (InterPro:IPR020839); Has 568 Blast hits to 559 proteins in 184 species: Archae - 0; Bacteria - 2; Metazoa - 324; Fungi - 134; Plants - 52; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). & (reliability: 1038.0) & (original description: no original description)","protein_coding" "PSME_00030066-RA","No alias","Pseudotsuga menziesii","(at5g67270 : 184.0) encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.; end binding protein 1C (EB1C); CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), EB1, C-terminal (InterPro:IPR004953); BEST Arabidopsis thaliana protein match is: microtubule end binding protein EB1A (TAIR:AT3G47690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 368.0) & (original description: no original description)","protein_coding" "PSME_00030405-RA","No alias","Pseudotsuga menziesii","(p42045|hemh_horvu : 390.0) Ferrochelatase-2, chloroplast precursor (EC 4.99.1.1) (Ferrochelatase II) (Protoheme ferro-lyase 2) (Heme synthetase 2) - Hordeum vulgare (Barley) & (at5g26030 : 313.0) encodes ferrochelatase I located in plastids. Involved in heme biosynthesis in non-photosynthetic tissues and induced by oxidative stress in photosynthetic tissues to supply heme for defensive hemoproteins; ferrochelatase 1 (FC1); FUNCTIONS IN: ferrochelatase activity; INVOLVED IN: response to oxidative stress, heme biosynthetic process, tetrapyrrole biosynthetic process; LOCATED IN: mitochondrion, chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ferrochelatase, active site (InterPro:IPR019772), Ferrochelatase (InterPro:IPR001015); BEST Arabidopsis thaliana protein match is: ferrochelatase 2 (TAIR:AT2G30390.1); Has 7391 Blast hits to 7389 proteins in 2072 species: Archae - 19; Bacteria - 4136; Metazoa - 176; Fungi - 140; Plants - 115; Viruses - 0; Other Eukaryotes - 2805 (source: NCBI BLink). & (reliability: 626.0) & (original description: no original description)","protein_coding" "PSME_00030929-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00031401-RA","No alias","Pseudotsuga menziesii","(at5g61510 : 453.0) GroES-like zinc-binding alcohol dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: cell differentiation, response to high light intensity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT4G21580.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 906.0) & (original description: no original description)","protein_coding" "PSME_00033335-RA","No alias","Pseudotsuga menziesii","(at1g21610 : 104.0) wound-responsive family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to wounding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G77310.1). & (reliability: 208.0) & (original description: no original description)","protein_coding" "PSME_00033493-RA","No alias","Pseudotsuga menziesii","(at5g53170 : 451.0) encodes an FtsH protease that is localized to the chloroplast and the mitochondrion; FTSH protease 11 (FTSH11); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: response to heat, PSII associated light-harvesting complex II catabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 4 (TAIR:AT2G26140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q5z974|ftsh_orysa : 233.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 902.0) & (original description: no original description)","protein_coding" "PSME_00034248-RA","No alias","Pseudotsuga menziesii","(at3g54440 : 249.0) glycoside hydrolase family 2 protein; FUNCTIONS IN: carbohydrate binding, cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: male gametophyte, guard cell; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich (InterPro:IPR006102), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 42, domain 5 (InterPro:IPR004199), Glycoside hydrolase family 2, TIM barrel (InterPro:IPR006103), Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase, family 2 (InterPro:IPR006101), Glycoside hydrolase-type carbohydrate-binding, subgroup (InterPro:IPR014718), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Galactose-binding domain-like (InterPro:IPR008979), Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain (InterPro:IPR013812), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781). & (reliability: 498.0) & (original description: no original description)","protein_coding" "PSME_00034772-RA","No alias","Pseudotsuga menziesii","(at2g32010 : 594.0) Encodes an inositol polyphosphate 5í-phosphatase (5PTase). Mediating phosphoinositide signaling. Involved in establishment of foliar vein patterns.; CVP2 like 1 (CVL1); FUNCTIONS IN: hydrolase activity, inositol or phosphatidylinositol phosphatase activity; INVOLVED IN: leaf vascular tissue pattern formation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G05470.1). & (reliability: 1188.0) & (original description: no original description)","protein_coding" "PSME_00035323-RA","No alias","Pseudotsuga menziesii","(at3g26100 : 620.0) Regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT3G15430.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1240.0) & (original description: no original description)","protein_coding" "PSME_00035525-RA","No alias","Pseudotsuga menziesii","(at3g20290 : 294.0) Encodes AtEHD1, one of the Arabidopsis Eps15 homology domain proteins involved in endocytosis (AtEHD2, At4g05520).; EPS15 homology domain 1 (EHD1); FUNCTIONS IN: GTP binding, GTPase activity, calcium ion binding; INVOLVED IN: endocytosis; LOCATED IN: endosome, microsome, membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 2 (InterPro:IPR018249), EPS15 homology (EH) (InterPro:IPR000261), Dynamin, GTPase domain (InterPro:IPR001401), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: EPS15 homology domain 2 (TAIR:AT4G05520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 588.0) & (original description: no original description)","protein_coding" "PSME_00036351-RA","No alias","Pseudotsuga menziesii","(at3g06980 : 171.0) DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP binding, nucleic acid binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RH39 (TAIR:AT4G09730.1); Has 36871 Blast hits to 36254 proteins in 2997 species: Archae - 517; Bacteria - 17572; Metazoa - 5953; Fungi - 4324; Plants - 2343; Viruses - 14; Other Eukaryotes - 6148 (source: NCBI BLink). & (reliability: 342.0) & (original description: no original description)","protein_coding" "PSME_00036684-RA","No alias","Pseudotsuga menziesii","(at5g21482 : 478.0) This gene used to be called AtCKX5. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.; cytokinin oxidase 7 (CKX7); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1); Has 8328 Blast hits to 8321 proteins in 1506 species: Archae - 208; Bacteria - 5322; Metazoa - 141; Fungi - 1495; Plants - 573; Viruses - 0; Other Eukaryotes - 589 (source: NCBI BLink). & (q9t0n8|ckx1_maize : 362.0) Cytokinin dehydrogenase 1 precursor (EC 1.5.99.12) (Cytokinin oxidase 1) (CKO 1) (COX 1) (ZmCKX1) - Zea mays (Maize) & (reliability: 956.0) & (original description: no original description)","protein_coding" "PSME_00037124-RA","No alias","Pseudotsuga menziesii","(q8gve1|cigr2_orysa : 538.0) Chitin-inducible gibberellin-responsive protein 2 - Oryza sativa (Rice) & (at5g48150 : 525.0) Member of GRAS gene family. Semi-dominant mutant has a reduced response to far-red light and appears to act early in the phytochrome A signaling pathway.; phytochrome a signal transduction 1 (PAT1); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: SCARECROW-like 21 (TAIR:AT2G04890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1050.0) & (original description: no original description)","protein_coding" "PSME_00037287-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00037300-RA","No alias","Pseudotsuga menziesii","(at1g48520 : 358.0) Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836).; GLU-ADT subunit B (GATB); FUNCTIONS IN: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor, ligase activity; INVOLVED IN: glutamyl-tRNA aminoacylation, translation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site (InterPro:IPR017958), Glutamyl-tRNA(Gln) amidotransferase, B subunit (InterPro:IPR004413), Aspartyl/glutamyl-tRNA amidotransferase subunit B-related (InterPro:IPR003789), Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E (InterPro:IPR017959), Asn/Gln amidotransferase (InterPro:IPR018027), Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal (InterPro:IPR006075); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 716.0) & (original description: no original description)","protein_coding" "PSME_00037468-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00037718-RA","No alias","Pseudotsuga menziesii","(at3g59940 : 114.0) Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT2G44130.1); Has 2977 Blast hits to 2510 proteins in 188 species: Archae - 4; Bacteria - 251; Metazoa - 1720; Fungi - 24; Plants - 858; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink). & (reliability: 228.0) & (original description: no original description)","protein_coding" "PSME_00037874-RA","No alias","Pseudotsuga menziesii","(at5g27280 : 144.0) Zim17-type zinc finger protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Zim17-type (InterPro:IPR007853); BEST Arabidopsis thaliana protein match is: Zim17-type zinc finger protein (TAIR:AT1G68730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 288.0) & (original description: no original description)","protein_coding" "PSME_00038343-RA","No alias","Pseudotsuga menziesii","(at4g23310 : 148.0) Encodes a cysteine-rich receptor-like protein kinase.; cysteine-rich RLK (RECEPTOR-like protein kinase) 23 (CRK23); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, leaf; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (TAIR:AT4G23270.1); Has 121765 Blast hits to 118949 proteins in 4447 species: Archae - 102; Bacteria - 13740; Metazoa - 44280; Fungi - 10260; Plants - 35406; Viruses - 410; Other Eukaryotes - 17567 (source: NCBI BLink). & (reliability: 296.0) & (original description: no original description)","protein_coding" "PSME_00040771-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00040869-RA","No alias","Pseudotsuga menziesii","(at1g09195 : 216.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Ppx/GppA phosphatase (InterPro:IPR003695). & (reliability: 432.0) & (original description: no original description)","protein_coding" "PSME_00042378-RA","No alias","Pseudotsuga menziesii","(at5g16860 : 203.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q76c99|rf1_orysa : 95.1) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 406.0) & (original description: no original description)","protein_coding" "PSME_00043270-RA","No alias","Pseudotsuga menziesii","(at5g67270 : 110.0) encodes a homolog of animal microtubule-end-binding protein. There are two other members of this family. EB1 forms foci at regions where the minus ends of microtubules are gathered during mitosis and early cytokinesis.; end binding protein 1C (EB1C); CONTAINS InterPro DOMAIN/s: Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715), EB1, C-terminal (InterPro:IPR004953); BEST Arabidopsis thaliana protein match is: microtubule end binding protein EB1A (TAIR:AT3G47690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 220.0) & (original description: no original description)","protein_coding" "PSME_00043974-RA","No alias","Pseudotsuga menziesii","(at4g05200 : 281.0) Encodes a cysteine-rich receptor-like protein kinase.; cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (CRK25); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (TAIR:AT4G23180.1); Has 124291 Blast hits to 122724 proteins in 4390 species: Archae - 112; Bacteria - 13863; Metazoa - 45275; Fungi - 10764; Plants - 35367; Viruses - 449; Other Eukaryotes - 18461 (source: NCBI BLink). & (q8l4h4|nork_medtr : 149.0) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) - Medicago truncatula (Barrel medic) & (reliability: 562.0) & (original description: no original description)","protein_coding" "PSME_00044241-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00044345-RA","No alias","Pseudotsuga menziesii","(at1g77230 : 98.2) Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G08320.1); Has 1613 Blast hits to 1438 proteins in 361 species: Archae - 117; Bacteria - 321; Metazoa - 455; Fungi - 164; Plants - 198; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink). & (reliability: 196.4) & (original description: no original description)","protein_coding" "PSME_00044590-RA","No alias","Pseudotsuga menziesii","(at5g34940 : 166.0) The protein is predicted (WoLF PSORT program) to be membrane-associated.; glucuronidase 3 (GUS3); FUNCTIONS IN: beta-glucuronidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 79, N-terminal (InterPro:IPR005199); BEST Arabidopsis thaliana protein match is: glucuronidase 2 (TAIR:AT5G07830.1); Has 340 Blast hits to 334 proteins in 62 species: Archae - 0; Bacteria - 20; Metazoa - 169; Fungi - 0; Plants - 131; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). & (reliability: 332.0) & (original description: no original description)","protein_coding" "PSME_00045194-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00045333-RA","No alias","Pseudotsuga menziesii","(at5g51290 : 372.0) Diacylglycerol kinase family protein; FUNCTIONS IN: diacylglycerol kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic domain (InterPro:IPR001206); BEST Arabidopsis thaliana protein match is: long-chain base (LCB) kinase 1 (TAIR:AT5G23450.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 744.0) & (original description: no original description)","protein_coding" "PSME_00045351-RA","No alias","Pseudotsuga menziesii","(at2g41700 : 329.0) ATP-binding cassette A1 (ABCA1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, amino acid transmembrane transporter activity; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ATP-binding cassette A2 (TAIR:AT3G47730.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 658.0) & (original description: no original description)","protein_coding" "PSME_00045663-RA","No alias","Pseudotsuga menziesii","(at4g33300 : 492.0) ADR1-like 1 (ADR1-L1); FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Powdery mildew resistance protein, RPW8 domain (InterPro:IPR008808), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: ADR1-like 2 (TAIR:AT5G04720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 984.0) & (original description: no original description)","protein_coding" "PSME_00045902-RA","No alias","Pseudotsuga menziesii","(at1g28440 : 739.0) HAESA-like 1 (HSL1); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich receptor-like protein kinase family protein (TAIR:AT4G28490.1); Has 214855 Blast hits to 132793 proteins in 4138 species: Archae - 139; Bacteria - 23060; Metazoa - 65756; Fungi - 10225; Plants - 90032; Viruses - 401; Other Eukaryotes - 25242 (source: NCBI BLink). & (p93194|rpk1_iponi : 430.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 1478.0) & (original description: no original description)","protein_coding" "PSME_00046566-RA","No alias","Pseudotsuga menziesii","(at1g16220 : 493.0) Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G79630.1); Has 5547 Blast hits to 5545 proteins in 292 species: Archae - 2; Bacteria - 12; Metazoa - 1332; Fungi - 643; Plants - 2421; Viruses - 5; Other Eukaryotes - 1132 (source: NCBI BLink). & (reliability: 986.0) & (original description: no original description)","protein_coding" "PSME_00046592-RA","No alias","Pseudotsuga menziesii","(at3g55260 : 175.0) Encodes a protein with β-hexosaminidase activity (the enzyme is active with p-nitrophenyl-β-N-acetylglucosaminide as substrate but displayed only a minor activity toward p-nitrophenyl-β-N-acetylgalactosaminide). The enzyme displays no distinct preference for a specific terminal GlcNAc residue and indeed cleaved the asialoagalactodabsylglycopeptide GnGn to a mixture of products.; beta-hexosaminidase 1 (HEXO1); FUNCTIONS IN: hexosaminidase activity, beta-N-acetylhexosaminidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 20, catalytic core (InterPro:IPR015883), Beta-N-acetylhexosaminidase, subunit a/b (InterPro:IPR015882), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 20 (InterPro:IPR001540), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta-hexosaminidase 3 (TAIR:AT1G65590.1); Has 3779 Blast hits to 3705 proteins in 735 species: Archae - 2; Bacteria - 2420; Metazoa - 475; Fungi - 222; Plants - 128; Viruses - 0; Other Eukaryotes - 532 (source: NCBI BLink). & (reliability: 350.0) & (original description: no original description)","protein_coding" "PSME_00046775-RA","No alias","Pseudotsuga menziesii","(at3g54420 : 171.0) encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.; homolog of carrot EP3-3 chitinase (EP3); FUNCTIONS IN: chitinase activity; INVOLVED IN: somatic embryogenesis, plant-type hypersensitive response; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2660 Blast hits to 2432 proteins in 504 species: Archae - 0; Bacteria - 547; Metazoa - 34; Fungi - 178; Plants - 1776; Viruses - 22; Other Eukaryotes - 103 (source: NCBI BLink). & (p27054|chi4_phavu : 164.0) Endochitinase PR4 precursor (EC 3.2.1.14) - Phaseolus vulgaris (Kidney bean) (French bean) & (reliability: 342.0) & (original description: no original description)","protein_coding" "PSME_00047353-RA","No alias","Pseudotsuga menziesii","(at5g18460 : 298.0) Protein of Unknown Function (DUF239); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 596.0) & (original description: no original description)","protein_coding" "PSME_00047488-RA","No alias","Pseudotsuga menziesii","(at5g23350 : 143.0) GRAM domain-containing protein / ABA-responsive protein-related; CONTAINS InterPro DOMAIN/s: GRAM (InterPro:IPR004182); BEST Arabidopsis thaliana protein match is: GRAM domain-containing protein / ABA-responsive protein-related (TAIR:AT5G23370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 286.0) & (original description: no original description)","protein_coding" "PSME_00047592-RA","No alias","Pseudotsuga menziesii","(at5g22950 : 162.0) VPS24.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT3G45000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 324.0) & (original description: no original description)","protein_coding" "PSME_00047658-RA","No alias","Pseudotsuga menziesii","(at2g44050 : 103.0) 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase [Arabidopsis thaliana]. Acts in the jasmonic acid signaling pathway.; COI1 SUPPRESSOR1 (COS1); FUNCTIONS IN: 6,7-dimethyl-8-ribityllumazine synthase activity; INVOLVED IN: riboflavin biosynthetic process, jasmonic acid mediated signaling pathway; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 6,7-dimethyl-8-ribityllumazine synthase (InterPro:IPR002180), 6,7-dimethyl-8-ribityllumazine synthase, chloroplast (InterPro:IPR017420); Has 7351 Blast hits to 7351 proteins in 2325 species: Archae - 190; Bacteria - 4938; Metazoa - 2; Fungi - 209; Plants - 81; Viruses - 0; Other Eukaryotes - 1931 (source: NCBI BLink). & (q9xh32|risb_spiol : 89.0) 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor (EC 2.5.1.9) (DMRL synthase) (Lumazine synthase) - Spinacia oleracea (Spinach) & (reliability: 206.0) & (original description: no original description)","protein_coding" "PSME_00047942-RA","No alias","Pseudotsuga menziesii","(at1g08590 : 138.0) similar to CLV1-like leucine rich repeat transmembrane receptor-like protein kinase (Ipomoea nil) (U77888); Leucine-rich receptor-like protein kinase family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root, leaf; EXPRESSED DURING: LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase family protein (TAIR:AT4G28650.1); Has 238620 Blast hits to 145276 proteins in 3605 species: Archae - 165; Bacteria - 22033; Metazoa - 74123; Fungi - 11983; Plants - 100762; Viruses - 458; Other Eukaryotes - 29096 (source: NCBI BLink). & (p93194|rpk1_iponi : 116.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 256.0) & (original description: no original description)","protein_coding" "PSME_00047994-RA","No alias","Pseudotsuga menziesii","(at3g16230 : 224.0) Predicted eukaryotic LigT; FUNCTIONS IN: RNA binding, catalytic activity; INVOLVED IN: RNA metabolic process, regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088), Predicted eukaryotic LigT (InterPro:IPR009210), RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), Protein kinase A anchor protein, nuclear localisation signal domain (InterPro:IPR019510); BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT (TAIR:AT3G16220.1). & (reliability: 448.0) & (original description: no original description)","protein_coding" "PSME_00048970-RA","No alias","Pseudotsuga menziesii","(p31237|acco_actch : 301.0) 1-aminocyclopropane-1-carboxylate oxidase (EC 1.14.17.4) (ACC oxidase) (Ethylene-forming enzyme) (EFE) - Actinidia chinensis (Kiwi) (Yangtao) & (at1g05010 : 289.0) Encodes 1-aminocyclopropane-1-carboxylate oxidase; ethylene-forming enzyme (EFE); FUNCTIONS IN: 1-aminocyclopropane-1-carboxylate oxidase activity; INVOLVED IN: response to fungus, ethylene biosynthetic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G12010.1); Has 8587 Blast hits to 8552 proteins in 1009 species: Archae - 0; Bacteria - 1142; Metazoa - 103; Fungi - 1035; Plants - 4924; Viruses - 0; Other Eukaryotes - 1383 (source: NCBI BLink). & (reliability: 578.0) & (original description: no original description)","protein_coding" "PSME_00049657-RA","No alias","Pseudotsuga menziesii","(at3g59530 : 532.0) Calcium-dependent phosphotriesterase superfamily protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, pollen exine formation; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT5G22020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p18417|stsy_catro : 151.0) Strictosidine synthase precursor (EC 4.3.3.2) - Catharanthus roseus (Rosy periwinkle) (Madagascar periwinkle) & (reliability: 1064.0) & (original description: no original description)","protein_coding" "PSME_00051637-RA","No alias","Pseudotsuga menziesii","(at4g38260 : 134.0) Protein of unknown function (DUF833); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF833 (InterPro:IPR008551); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF833) (TAIR:AT1G20680.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 268.0) & (original description: no original description)","protein_coding" "PSME_00053814-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding" "PSME_00055186-RA","No alias","Pseudotsuga menziesii","(at2g27590 : 231.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Has 109 Blast hits to 109 proteins in 24 species: Archae - 0; Bacteria - 26; Metazoa - 0; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). & (reliability: 462.0) & (original description: no original description)","protein_coding" "Seita.1G137400.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.1G178200.1","No alias","Setaria italica ","chromatin remodeling factor *(Rad5)","protein_coding" "Seita.1G206600.1","No alias","Setaria italica ","brassinosteroid co-receptor protein kinase *(BAK/SERK) & LRR-II protein kinase & co-receptor kinase component of FLS2-BAK1 flagellin receptor complex & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Seita.1G217900.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.1G283100.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.1G297100.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.1G299300.1","No alias","Setaria italica ","anion channel / anion","protein_coding" "Seita.1G311300.1","No alias","Setaria italica ","zinc metalloprotease *(OMA1)","protein_coding" "Seita.1G319100.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.1G374500.1","No alias","Setaria italica ","regulatory protein *(GCN20) of eIF2-alpha kinase activity","protein_coding" "Seita.2G035600.1","No alias","Setaria italica ","meiotic crossover formation factor *(FANCD2)","protein_coding" "Seita.2G054500.1","No alias","Setaria italica ","peptidyl-prolyl cis-trans isomerase *(CYP63/CYP95) & EC_5.2 cis-trans-isomerase","protein_coding" "Seita.2G060300.1","No alias","Setaria italica ","component *(KU70) of Ku70-Ku80 helicase complex","protein_coding" "Seita.2G117100.1","No alias","Setaria italica ","component *(BOP1) of ribosome PES-BOP1-WDR12 (PeBoW) complex","protein_coding" "Seita.2G125200.1","No alias","Setaria italica ","endo-beta-1,4-xylanase","protein_coding" "Seita.2G146300.1","No alias","Setaria italica ","component *(NOT10) of mRNA deadenylation CCR4-NOT complex","protein_coding" "Seita.2G167400.1","No alias","Setaria italica ","phosphometabolite transporter *(TPT/PPT/GPT/XPT)","protein_coding" "Seita.2G177400.1","No alias","Setaria italica ","component *(KU70) of Ku70-Ku80 helicase complex","protein_coding" "Seita.2G186700.1","No alias","Setaria italica ","CWF19-type post-transcriptionally regulatory factor","protein_coding" "Seita.2G193500.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G195700.1","No alias","Setaria italica ","component *(AUG5) of Augmin gamma-TuRC recruiting complex","protein_coding" "Seita.2G259900.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G281500.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G301800.1","No alias","Setaria italica ","quinolinate phosphoribosyl transferase & EC_2.4 glycosyltransferase","protein_coding" "Seita.2G311000.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.2G330600.1","No alias","Setaria italica ","exoribonuclease *(RRP6L)","protein_coding" "Seita.2G371700.1","No alias","Setaria italica ","large subunit *(SAE2) of E1 SUMO ubiquitin-activating enzyme complex","protein_coding" "Seita.2G378100.1","No alias","Setaria italica ","chromatin remodeling factor *(SMARCAL1)","protein_coding" "Seita.3G035800.1","No alias","Setaria italica ","leucine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond","protein_coding" "Seita.3G076000.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.3G116600.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.3G119800.1","No alias","Setaria italica ","LSU processome assembly factor *(NLE)","protein_coding" "Seita.3G164300.1","No alias","Setaria italica ","histone chaperone *(NAP)","protein_coding" "Seita.3G178300.1","No alias","Setaria italica ","G-class RAB GTPase","protein_coding" "Seita.3G181200.1","No alias","Setaria italica ","prolyl aminopeptidase *(PAP1)","protein_coding" "Seita.3G220100.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.3G224900.1","No alias","Setaria italica ","component *(FtsZ2) of plastid division FtsZ prokaryotic-tubulin filaments","protein_coding" "Seita.3G264800.1","No alias","Setaria italica ","aminoacyl-tRNA binding factor *(eEF1A))","protein_coding" "Seita.3G287000.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.3G334100.1","No alias","Setaria italica ","preprotein processing peptidase *(ICP55) & EC_3.4 hydrolase acting on peptide bond (peptidase)","protein_coding" "Seita.3G370200.1","No alias","Setaria italica ","P2B-type calcium cation-transporting ATPase *(ACA)","protein_coding" "Seita.4G058800.1","No alias","Setaria italica ","large subunit of ribonucleoside-diphosphate reductase heterodimer & EC_1.17 oxidoreductase acting on CH or CH2 group","protein_coding" "Seita.4G128700.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.4G147300.1","No alias","Setaria italica ","active component *(ALA) of ALA-ALIS flippase complex & P4-type ATPase component *(ALA) of phospholipid flippase complex & EC_3.6 hydrolase acting on acid anhydride","protein_coding" "Seita.4G190200.1","No alias","Setaria italica ","EC_4.3 carbon-nitrogen lyase & hydroxy-tetrahydrodihydrodipicolinate synthase","protein_coding" "Seita.4G238300.1","No alias","Setaria italica ","ARF-GTPase guanyl-nucleotide exchange factor *(GBF)","protein_coding" "Seita.5G001600.1","No alias","Setaria italica ","small solute transporter *(BT1)","protein_coding" "Seita.5G033600.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.5G043300.1","No alias","Setaria italica ","siRNA-integrating factor *(AGO)","protein_coding" "Seita.5G059600.1","No alias","Setaria italica ","Extensin protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Seita.5G069200.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.5G071600.1","No alias","Setaria italica ","DNA double-strand break transducer kinase *(ATM)","protein_coding" "Seita.5G101600.1","No alias","Setaria italica ","component *(IWS1) of SPT6-IWS1 transcription elongation complex","protein_coding" "Seita.5G136900.1","No alias","Setaria italica ","MYB-RELATED transcription factor *(ALY) & component *(ALY) of DREAM cell cycle regulatory complex","protein_coding" "Seita.5G149200.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.5G227900.1","No alias","Setaria italica ","auxiliary component *(NAA15) of NatA/NatE N-terminal acetylase complexes","protein_coding" "Seita.5G276000.1","No alias","Setaria italica ","monoacylglycerol lipase","protein_coding" "Seita.5G302300.1","No alias","Setaria italica ","subfamily ABCG transporter","protein_coding" "Seita.5G307600.1","No alias","Setaria italica ","component *(TAH18) of cytosolic CIA system assembly phase","protein_coding" "Seita.5G315400.1","No alias","Setaria italica ","component *(STT3) of oligosaccharyl transferase (OST) complex","protein_coding" "Seita.5G388800.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.5G401400.1","No alias","Setaria italica ","beta-1,3-galactosidase *(GH43)","protein_coding" "Seita.5G408300.1","No alias","Setaria italica ","component *(SRP72) of SRP (signal recognition particle) complex","protein_coding" "Seita.5G420200.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.5G446400.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.6G052300.1","No alias","Setaria italica ","protein de-S-acylation enzyme *(ABAPT)","protein_coding" "Seita.6G093300.1","No alias","Setaria italica ","SETD-type lysine N-methyltransferase","protein_coding" "Seita.6G150900.1","No alias","Setaria italica ","zinc cation transporter *(Zn-CDF) & zinc cation transporter *(Zn-CDF)","protein_coding" "Seita.6G158100.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.6G248900.1","No alias","Setaria italica ","O-fucosyltransferase *(SPY)","protein_coding" "Seita.6G251900.1","No alias","Setaria italica ","NAC-type transcription factor & regulatory factor *(AIF1) of anther dehiscence","protein_coding" "Seita.7G087400.1","No alias","Setaria italica ","component *(uS11m) of small mitoribosomal-subunit proteome","protein_coding" "Seita.7G180700.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.7G199100.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.7G205600.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.7G214400.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.7G241300.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.7G268800.1","No alias","Setaria italica ","gamma tubulin component *(TUG1) of gamma-Tubulin ring complex","protein_coding" "Seita.8G040900.1","No alias","Setaria italica ","BEL-type transcription factor","protein_coding" "Seita.8G063500.1","No alias","Setaria italica ","component *(NRP-ABCDE10) of RNA polymerase complexes","protein_coding" "Seita.8G067700.1","No alias","Setaria italica ","ubiquitin adaptor protein *(TOL)","protein_coding" "Seita.8G144700.1","No alias","Setaria italica ","histone chaperone *(CHZ)","protein_coding" "Seita.8G152400.1","No alias","Setaria italica ","transcription factor","protein_coding" "Seita.8G158000.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.8G166100.1","No alias","Setaria italica ","component *(uL4m) of large mitoribosomal-subunit proteome","protein_coding" "Seita.8G236800.1","No alias","Setaria italica ","large subunit of U2AF pre-RNA splicing auxiliary factor complex","protein_coding" "Seita.9G004900.1","No alias","Setaria italica ","component *(KU80) of Ku70-Ku80 helicase complex","protein_coding" "Seita.9G073900.1","No alias","Setaria italica ","component *(uS14) of small ribosomal-subunit (SSU) proteome","protein_coding" "Seita.9G089900.1","No alias","Setaria italica ","component *(EMF2/VRN2/FIS2) of PRC2 histone methylation complex","protein_coding" "Seita.9G095100.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G128300.1","No alias","Setaria italica ","component *(PES) of ribosome PES-BOP1-WDR12 (PeBoW) complex","protein_coding" "Seita.9G152600.1","No alias","Setaria italica ","chromatin architectural modulator *(PNET)","protein_coding" "Seita.9G173600.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G203100.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G233500.1","No alias","Setaria italica ","component *(SF3B4) of splicing factor 3B complex","protein_coding" "Seita.9G263000.1","No alias","Setaria italica ","component *(GCN5/ADA4) of SAGA transcription co-activator complex","protein_coding" "Seita.9G287000.1","No alias","Setaria italica ","EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Seita.9G384300.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G393500.1","No alias","Setaria italica ","peptidyl-prolyl cis-trans isomerase *(PAS)","protein_coding" "Seita.9G407200.1","No alias","Setaria italica ","component *(RAD9) of 9-1-1 DNA damage sensor complex","protein_coding" "Seita.9G411000.1","No alias","Setaria italica ","EC_4.2 carbon-oxygen lyase & fumarase","protein_coding" "Seita.9G431200.1","No alias","Setaria italica ","argininosuccinate lyase & EC_4.3 carbon-nitrogen lyase","protein_coding" "Seita.9G442200.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G444800.1","No alias","Setaria italica ","component *(TOP6A) of somatic DNA topoisomerase VI complex","protein_coding" "Seita.9G449900.1","No alias","Setaria italica ","N2-acetylornithine","protein_coding" "Seita.9G480800.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G528400.1","No alias","Setaria italica ","Unknown function","protein_coding" "Seita.9G543500.1","No alias","Setaria italica ","tRNA cytidine-methyltransferase *(TRM140)","protein_coding" "Seita.9G568700.1","No alias","Setaria italica ","RNA splicing factor *(RS31/40/41)","protein_coding" "Sobic.001G005800.1","No alias","Sorghum bicolor ","component *(KU80) of Ku70-Ku80 helicase complex","protein_coding" "Sobic.001G015400.1","No alias","Sorghum bicolor ","translation elongation factor *(EF-G)","protein_coding" "Sobic.001G026400.1","No alias","Sorghum bicolor ","tRNA adenosine-methyltransferase *(TRM13)","protein_coding" "Sobic.001G035200.1","No alias","Sorghum bicolor ","small subunit *(AXR1/AXL) of E1 RUB ubiquitin-activating enzyme complex","protein_coding" "Sobic.001G039300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G041200.1","No alias","Sorghum bicolor ","peptidyl-prolyl cis-trans isomerase *(CYP22) & EC_5.2 cis-trans-isomerase","protein_coding" "Sobic.001G042200.1","No alias","Sorghum bicolor ","regulatory GTPase (MIRO) of mitochondrion fission","protein_coding" "Sobic.001G054800.2","No alias","Sorghum bicolor ","linker histone *(H1)","protein_coding" "Sobic.001G061800.1","No alias","Sorghum bicolor ","component *(RFC3) of PCNA sliding clamp loader complex","protein_coding" "Sobic.001G069300.2","No alias","Sorghum bicolor ","RNA editing factor *(DEK36)","protein_coding" "Sobic.001G073150.1","No alias","Sorghum bicolor ","tRNA 4-demethylwyosine synthase *(TYW1)","protein_coding" "Sobic.001G081700.1","No alias","Sorghum bicolor ","component *(SWIB) of SWI-B chromatin-remodeling complexes","protein_coding" "Sobic.001G089600.1","No alias","Sorghum bicolor ","group-I intron splicing RNA helicase *(ABO6)","protein_coding" "Sobic.001G090800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G116800.1","No alias","Sorghum bicolor ","RNA editing factor *(OZ)","protein_coding" "Sobic.001G120500.1","No alias","Sorghum bicolor ","component *(Toc64-III) of outer envelope TOC translocation system","protein_coding" "Sobic.001G145400.1","No alias","Sorghum bicolor ","EC_6.1 ligase forming carbon-oxygen bond & threonine-tRNA ligase","protein_coding" "Sobic.001G157600.2","No alias","Sorghum bicolor ","component *(MSI1) of PRC2 histone methylation complex & component *(CAF1c/MSI) of CAF1 histone chaperone complex","protein_coding" "Sobic.001G167500.1","No alias","Sorghum bicolor ","component *(bL25m) of large mitoribosomal-subunit proteome","protein_coding" "Sobic.001G172300.1","No alias","Sorghum bicolor ","component *(FLN2) of plastid-encoded RNA polymerase","protein_coding" "Sobic.001G186600.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G196700.1","No alias","Sorghum bicolor ","S28-class carboxypeptidase & EC_3.4 hydrolase acting on peptide bond (peptidase)","protein_coding" "Sobic.001G202500.1","No alias","Sorghum bicolor ","Cyt-P450 hydroxylase scaffold protein *(MSBP)","protein_coding" "Sobic.001G211500.1","No alias","Sorghum bicolor ","DNA ligase *(LIG1) & DNA replication DNA ligase *(LIG1) & EC_6.5 ligase forming phosphoric ester bond","protein_coding" "Sobic.001G212200.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G226000.1","No alias","Sorghum bicolor ","component *(MAC3) of MAC spliceosome-associated complex & E3 ubiquitin protein ligase *(PUB60)","protein_coding" "Sobic.001G233700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G252500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G261585.1","No alias","Sorghum bicolor ","modification reader component *(LHP1) of PRC1 histone mono-ubiquitination complex","protein_coding" "Sobic.001G268300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G281800.1","No alias","Sorghum bicolor ","cofactor of plastid-encoded RNA polymerase *(TAC18)","protein_coding" "Sobic.001G368800.1","No alias","Sorghum bicolor ","diphthine methyl ester synthase *(DPH5) & EC_2.1 transferase transferring one-carbon group","protein_coding" "Sobic.001G373800.1","No alias","Sorghum bicolor ","component CBP80 of CBP80-CBP20 mRNA Cap-Binding complex","protein_coding" "Sobic.001G383300.1","No alias","Sorghum bicolor ","subfamily ABCB transporter & transport protein ATM of mitochondrial ISC system export machinery","protein_coding" "Sobic.001G384500.1","No alias","Sorghum bicolor ","LRR-VIII-1 protein kinase & EC_2.7 transferase transferring phosphorus-containing group & hydrogen peroxide receptor kinase *(HPCA)","protein_coding" "Sobic.001G385400.1","No alias","Sorghum bicolor ","RopGEF guanine nucleotide exchange factor *(SPIKE)","protein_coding" "Sobic.001G389500.1","No alias","Sorghum bicolor ","guanylate kinase","protein_coding" "Sobic.001G391101.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G401700.1","No alias","Sorghum bicolor ","LL-diaminopimelate aminotransferase","protein_coding" "Sobic.001G408600.1","No alias","Sorghum bicolor ","RNA pseudouridine synthase *(PUS5)","protein_coding" "Sobic.001G431700.1","No alias","Sorghum bicolor ","assembly factor (CMC1) of cytochrome c oxidase assembly","protein_coding" "Sobic.001G432300.1","No alias","Sorghum bicolor ","imidazoleglycerol-phosphate synthase","protein_coding" "Sobic.001G440900.1","No alias","Sorghum bicolor ","component *(Sm-D3) of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex","protein_coding" "Sobic.001G451200.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G455800.1","No alias","Sorghum bicolor ","EC_6.1 ligase forming carbon-oxygen bond & methionine-tRNA ligase","protein_coding" "Sobic.001G462600.2","No alias","Sorghum bicolor ","component *(RBL/SWD1) of COMPASS histone trimethylation complex","protein_coding" "Sobic.001G469200.1","No alias","Sorghum bicolor ","component *(CSN4) of COP9 signalosome complex","protein_coding" "Sobic.001G471600.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G473800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G478700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.001G486500.3","No alias","Sorghum bicolor ","tRNA thiouridylase","protein_coding" "Sobic.001G507900.1","No alias","Sorghum bicolor ","tRNA cytidine-methyltransferase *(TRM140)","protein_coding" "Sobic.001G522000.1","No alias","Sorghum bicolor ","solute transporter *(MTCC)","protein_coding" "Sobic.001G532100.1","No alias","Sorghum bicolor ","component *(CSN1) of COP9 signalosome complex","protein_coding" "Sobic.001G536000.1","No alias","Sorghum bicolor ","component *(ARP4) shared with NuA4/SWR1 complexes & component *(ARP4) of SWR1 chromatin remodeling complex","protein_coding" "Sobic.002G003300.1","No alias","Sorghum bicolor ","component *(KU70) of Ku70-Ku80 helicase complex","protein_coding" "Sobic.002G017900.1","No alias","Sorghum bicolor ","histone chaperone *(NASP)","protein_coding" "Sobic.002G037900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G043000.1","No alias","Sorghum bicolor ","miRNA/siRNA methyltransferase *(HEN1)","protein_coding" "Sobic.002G051600.1","No alias","Sorghum bicolor ","assembly factor MMS19 of cytosolic CIA system transfer phase","protein_coding" "Sobic.002G052400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G056300.1","No alias","Sorghum bicolor ","linker histone *(H1)","protein_coding" "Sobic.002G056400.1","No alias","Sorghum bicolor ","component *(KU70) of Ku70-Ku80 helicase complex","protein_coding" "Sobic.002G079100.2","No alias","Sorghum bicolor ","methylated DNA binding component *(SUVH1/3) of SUVH-DNAJ methylation reader complex & EC_2.1 transferase transferring one-carbon group","protein_coding" "Sobic.002G111700.6","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G113800.1","No alias","Sorghum bicolor ","spermidine synthase & EC_2.5 transferase transferring alkyl or aryl group, other than methyl group","protein_coding" "Sobic.002G126800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G179100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G182000.1","No alias","Sorghum bicolor ","CWF19-type post-transcriptionally regulatory factor","protein_coding" "Sobic.002G191100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G192200.1","No alias","Sorghum bicolor ","component *(PCID2/Thp1) of TREX-2 mRNP trafficking complex","protein_coding" "Sobic.002G254800.1","No alias","Sorghum bicolor ","type-1A topoisomerase TOP3b & topoisomerase component *(TOP3b) of TDRD3-TOP3B methyl-arginine reader complex","protein_coding" "Sobic.002G263900.3","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G264300.1","No alias","Sorghum bicolor ","3-beta hydroxysteroid dehydrogenase of phytosterol C4-demethylation complex & EC_1.1 oxidoreductase acting on CH-OH group of donor","protein_coding" "Sobic.002G268000.3","No alias","Sorghum bicolor ","2-keto acid transporter *(BAT)","protein_coding" "Sobic.002G295700.1","No alias","Sorghum bicolor ","nicotinate transporter *(NiaP)","protein_coding" "Sobic.002G297000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G301200.1","No alias","Sorghum bicolor ","serine carboxypeptidase & EC_3.4 hydrolase acting on peptide bond (peptidase)","protein_coding" "Sobic.002G304700.1","No alias","Sorghum bicolor ","flippase *(RFT1) & lipid-linked oligosaccharide transporter *(RFT)","protein_coding" "Sobic.002G317600.1","No alias","Sorghum bicolor ","threonine reactive imine intermediate deaminase *(RidA)","protein_coding" "Sobic.002G363500.2","No alias","Sorghum bicolor ","TrmH-type tRNA methyltransferase","protein_coding" "Sobic.002G389200.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G394600.1","No alias","Sorghum bicolor ","alpha-type-7 component *(PAG) of 26S proteasome & EC_3.4 hydrolase acting on peptide bond (peptidase)","protein_coding" "Sobic.002G403200.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.002G414800.1","No alias","Sorghum bicolor ","RNA editing factor *(PPME)","protein_coding" "Sobic.002G426400.1","No alias","Sorghum bicolor ","LON-type protease","protein_coding" "Sobic.003G021600.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.003G024000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.003G028600.2","No alias","Sorghum bicolor ","aminoimidazole RN carboxylase *(PUR6)","protein_coding" "Sobic.003G046300.1","No alias","Sorghum bicolor ","deubiquitinase component *(GID6/UBP14) of GID ubiquitination complex","protein_coding" "Sobic.003G049200.1","No alias","Sorghum bicolor ","EC_1.6 oxidoreductase acting on NADH or NADPH","protein_coding" "Sobic.003G070300.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.003G072500.1","No alias","Sorghum bicolor ","regulatory protein of DNA methylation pathway *(IDN/IDP)","protein_coding" "Sobic.003G075100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.003G110100.1","No alias","Sorghum bicolor ","O-acetylserine sulfydrylase & EC_2.5 transferase transferring alkyl or aryl group, other than methyl group","protein_coding" "Sobic.003G119400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.003G122300.1","No alias","Sorghum bicolor ","solute transporter *(MTCC)","protein_coding" "Sobic.003G128300.1","No alias","Sorghum bicolor ","large subunit *(ECR1) of E1 RUB ubiquitin-activating enzyme complex","protein_coding" "Sobic.003G129500.3","No alias","Sorghum bicolor ","siRNA-integrating factor *(AGO)","protein_coding" "Sobic.003G143800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.003G146600.1","No alias","Sorghum bicolor ","rRNA biogenesis auxiliary factor *(APUM23)","protein_coding" "Sobic.003G158300.3","No alias","Sorghum bicolor ","multifunctional enzyme *(MFP)","protein_coding" "Sobic.003G183900.1","No alias","Sorghum bicolor ","RNA editing factor *(OTP71)","protein_coding" "Sobic.003G195000.1","No alias","Sorghum bicolor ","ATP-dependent metalloprotease *(FtsH4/11)","protein_coding" "Sobic.003G199900.1","No alias","Sorghum bicolor ","tyrosine aminotransferase *(TAT) & EC_2.6 transferase transferring nitrogenous group","protein_coding" "Sobic.003G202100.1","No alias","Sorghum bicolor ","assembly factor of NADH dehydrogenase complex *(NDUFAF7)","protein_coding" "Sobic.003G203100.1","No alias","Sorghum bicolor ","RNA editing factor *(MEF7)","protein_coding" "Sobic.003G222200.1","No alias","Sorghum bicolor ","EC_1.1 oxidoreductase acting on CH-OH group of donor","protein_coding" "Sobic.003G246000.1","No alias","Sorghum bicolor ","component *(RRP40) of exosome EXO9 core complex","protein_coding" "Sobic.003G256800.1","No alias","Sorghum bicolor ","component *(NRPC13/RPC82) of TFIIIe transcription factor module","protein_coding" "Sobic.003G260400.1","No alias","Sorghum bicolor ","DNA ligase *(LIG6) & EC_6.5 ligase forming phosphoric ester bond","protein_coding" "Sobic.003G260600.1","No alias","Sorghum bicolor ","subunit beta of ATP synthase peripheral MF1 subcomplex","protein_coding" "Sobic.003G276500.1","No alias","Sorghum bicolor ","voltage-gated anion channel *(VDAC)","protein_coding" "Sobic.003G291300.1","No alias","Sorghum bicolor ","MRM1-type rRNA methyltransferase","protein_coding" "Sobic.003G307900.1","No alias","Sorghum bicolor ","transcription factor","protein_coding" "Sobic.003G310900.1","No alias","Sorghum bicolor ","deubiquitinase *(UBP12-13) & deubiquitinase *(UBP12-13)","protein_coding" "Sobic.003G353600.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.003G368200.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.003G368400.1","No alias","Sorghum bicolor ","UDP-glucose","protein_coding" "Sobic.003G377200.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.003G397100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.003G414500.1","No alias","Sorghum bicolor ","lyso-phosphatidylinositol acyltransferase *(LPIAT)","protein_coding" "Sobic.003G416300.1","No alias","Sorghum bicolor ","class phi glutathione S-transferase","protein_coding" "Sobic.003G424300.1","No alias","Sorghum bicolor ","pyrroline-5-carboxylate reductase & EC_1.5 oxidoreductase acting on CH-NH group of donor","protein_coding" "Sobic.003G433300.1","No alias","Sorghum bicolor ","component *(MLH1) of MutLy endonuclease heterodimer & component *(MLH1) of MLH1-PMS1 heterodimer","protein_coding" "Sobic.004G000500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.004G007500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.004G025800.1","No alias","Sorghum bicolor ","EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.004G031300.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.004G038100.1","No alias","Sorghum bicolor ","scaffold nucleoporin of nuclear pore complex *(NUP160)","protein_coding" "Sobic.004G043750.1","No alias","Sorghum bicolor ","component *(NRPE1) of RNA polymerase V complex","protein_coding" "Sobic.004G047500.1","No alias","Sorghum bicolor ","recombination mediator *(Whirly)","protein_coding" "Sobic.004G050300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.004G053500.1","No alias","Sorghum bicolor ","adaptor protein exchange factor *(CAND1)","protein_coding" "Sobic.004G064600.1","No alias","Sorghum bicolor ","ubiquitin-proteasome shuttle factor *(RAD23)","protein_coding" "Sobic.004G078500.1","No alias","Sorghum bicolor ","LRR-V protein kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.004G132100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.004G151000.1","No alias","Sorghum bicolor ","component *(RAD50) of MRE11-RAD50-NBS1 (MRN) complex & component *(RAD50) of DNA resection MRE11-RAD50-NBS1 (MRN) complex","protein_coding" "Sobic.004G209800.1","No alias","Sorghum bicolor ","ribosome docking factor *(MDM38)","protein_coding" "Sobic.004G252100.1","No alias","Sorghum bicolor ","core component *(NHP2) of H/ACA snoRNP RNA pseudouridylation complex","protein_coding" "Sobic.004G255300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.004G261500.1","No alias","Sorghum bicolor ","ribose-phosphate diphosphokinase","protein_coding" "Sobic.004G282100.1","No alias","Sorghum bicolor ","zinc metalloprotease *(STE24) & EC_3.4 hydrolase acting on peptide bond (peptidase)","protein_coding" "Sobic.004G315500.1","No alias","Sorghum bicolor ","component *(RFC5) of PCNA sliding clamp loader complex","protein_coding" "Sobic.004G321300.1","No alias","Sorghum bicolor ","subgroup ERF-VII transcription factor & transcription factor component *(HRE/RAP2.12) of oxygen-sensor activity","protein_coding" "Sobic.004G322300.1","No alias","Sorghum bicolor ","component *(APC4) of (APC/C)-dependent ubiquitination platform subcomplex","protein_coding" "Sobic.004G327500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.004G332800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.004G352600.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.004G357900.1","No alias","Sorghum bicolor ","homoserine kinase","protein_coding" "Sobic.005G010900.2","No alias","Sorghum bicolor ","scaffold nucleoporin of nuclear pore complex *(NUP188)","protein_coding" "Sobic.005G011000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.005G017100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.005G022000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.005G032400.1","No alias","Sorghum bicolor ","component *(TRO/ASH2) of COMPASS histone trimethylation complex","protein_coding" "Sobic.005G045700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.005G058900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.005G064100.2","No alias","Sorghum bicolor ","cellulose synthase CSC-interactive protein *(CSI)","protein_coding" "Sobic.005G081000.3","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.005G084300.1","No alias","Sorghum bicolor ","2S globulin seed storage protein","protein_coding" "Sobic.005G087900.5","No alias","Sorghum bicolor ","EC_3.2 glycosylase & glucosylceramidase *(GCD)","protein_coding" "Sobic.005G088900.4","No alias","Sorghum bicolor ","component *(NOT11) of mRNA deadenylation CCR4-NOT complex","protein_coding" "Sobic.005G123400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.005G180900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.006G008300.1","No alias","Sorghum bicolor ","SMARCC component *(SWI3) of chromatin remodeling complex","protein_coding" "Sobic.006G010400.1","No alias","Sorghum bicolor ","tRNA dihydrouridine synthase","protein_coding" "Sobic.006G025000.2","No alias","Sorghum bicolor ","TCP-type transcription factor","protein_coding" "Sobic.006G028100.1","No alias","Sorghum bicolor ","subunit beta of ETF electron transfer flavoprotein complex","protein_coding" "Sobic.006G029100.1","No alias","Sorghum bicolor ","component *(ARP9) of INO80 chromatin remodeling complex","protein_coding" "Sobic.006G033101.1","No alias","Sorghum bicolor ","component *(CPSF160/Yhh1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex","protein_coding" "Sobic.006G040000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.006G049600.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.006G056600.1","No alias","Sorghum bicolor ","component *(uL4m) of large mitoribosomal-subunit proteome","protein_coding" "Sobic.006G059500.1","No alias","Sorghum bicolor ","scaffold factor *(COILIN) of Cajal body formation","protein_coding" "Sobic.006G061100.1","No alias","Sorghum bicolor ","regulatory subunit betagamma of SNF1-related SnRK1 kinase complex & regulatory subunit betagamma of SnRK1 kinase complex","protein_coding" "Sobic.006G088000.1","No alias","Sorghum bicolor ","component *(Tic40) of inner envelope TIC translocation system","protein_coding" "Sobic.006G120200.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.006G126600.1","No alias","Sorghum bicolor ","Trihelix-type transcription factor","protein_coding" "Sobic.006G135900.1","No alias","Sorghum bicolor ","platform ATPase CDC48","protein_coding" "Sobic.006G139100.1","No alias","Sorghum bicolor ","mRNA poly-A-tail binding factor *(PABP)","protein_coding" "Sobic.006G148700.1","No alias","Sorghum bicolor ","adenosine kinase *(ADK) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.006G149500.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.006G153900.1","No alias","Sorghum bicolor ","organic anion transporter *(OATP)","protein_coding" "Sobic.006G157000.2","No alias","Sorghum bicolor ","adenylosuccinate lyase *(PUR8)","protein_coding" "Sobic.006G157700.1","No alias","Sorghum bicolor ","bifunctional alpha-L-arabinofuranosidase and beta-D-xylosidase *(BXL) & EC_3.2 glycosylase","protein_coding" "Sobic.006G162400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.006G184900.1","No alias","Sorghum bicolor ","component *(VIP6/CTR9) of PAF1C transcription initiation and elongation complex","protein_coding" "Sobic.006G193500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.006G198400.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.006G212000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.006G217000.1","No alias","Sorghum bicolor ","imidazoleglycerol-phosphate dehydratase & EC_4.2 carbon-oxygen lyase","protein_coding" "Sobic.006G252200.1","No alias","Sorghum bicolor ","regulatory component *(RPN8) of 26S proteasome","protein_coding" "Sobic.006G256300.4","No alias","Sorghum bicolor ","leucine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond","protein_coding" "Sobic.006G266700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.006G272200.1","No alias","Sorghum bicolor ","component *(CPFS5/CFIm25) of Cleavage Factor I (CF-Im) complex","protein_coding" "Sobic.007G014800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.007G029200.1","No alias","Sorghum bicolor ","regulatory protein *(WAP) of SUN-WIP cytoskeleton-nucleoskeleton-linker complex","protein_coding" "Sobic.007G068100.1","No alias","Sorghum bicolor ","aconitase *(ACO) & aconitase & EC_4.2 carbon-oxygen lyase","protein_coding" "Sobic.007G071900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.007G089800.1","No alias","Sorghum bicolor ","SETD-type lysine N-methyltransferase","protein_coding" "Sobic.007G092200.1","No alias","Sorghum bicolor ","aspartate transcarbamoylase *(ATC)","protein_coding" "Sobic.007G108100.1","No alias","Sorghum bicolor ","Hsp90-co-chaperone *(P23)","protein_coding" "Sobic.007G165600.1","No alias","Sorghum bicolor ","broad substrate-specificity aminopeptidase *(MPA1)","protein_coding" "Sobic.007G182600.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.007G186000.1","No alias","Sorghum bicolor ","biotin synthase & EC_2.8 transferase transferring sulfur-containing group","protein_coding" "Sobic.007G187800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.007G191600.1","No alias","Sorghum bicolor ","component *(RRP43) of exosome EXO9 core complex","protein_coding" "Sobic.007G193900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.007G202600.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.007G208400.1","No alias","Sorghum bicolor ","RNA editing factor *(REME1)","protein_coding" "Sobic.007G209600.1","No alias","Sorghum bicolor ","histone H3K36 methylation reader *(EML)","protein_coding" "Sobic.007G218600.1","No alias","Sorghum bicolor ","uracil phosphoribosyltransferase *(UPP) & EC_2.4 glycosyltransferase","protein_coding" "Sobic.007G219800.1","No alias","Sorghum bicolor ","heme-o to heme-a conversion factor *(COX15) of cytochrome c oxidase assembly","protein_coding" "Sobic.008G052200.1","No alias","Sorghum bicolor ","beta-galactosidase *(BGAL9) & EC_3.2 glycosylase","protein_coding" "Sobic.008G057900.1","No alias","Sorghum bicolor ","plastidial ascorbate peroxidase *(APX) & EC_1.11 oxidoreductase acting on peroxide as acceptor","protein_coding" "Sobic.008G059900.2","No alias","Sorghum bicolor ","dihydrolipoamide acetyltransferase component of plastidial pyruvate dehydrogenase complex & EC_2.3 acyltransferase","protein_coding" "Sobic.008G082500.1","No alias","Sorghum bicolor ","EC_6.1 ligase forming carbon-oxygen bond & alanine-tRNA ligase","protein_coding" "Sobic.008G083400.1","No alias","Sorghum bicolor ","argininosuccinate synthetase & EC_6.3 ligase forming carbon-nitrogen bond","protein_coding" "Sobic.008G084600.1","No alias","Sorghum bicolor ","adenylate kinase & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.008G100400.3","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.008G100700.1","No alias","Sorghum bicolor ","cofactor component *(GIF) of GRF-GIF transcriptional complex","protein_coding" "Sobic.008G102600.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.008G118500.1","No alias","Sorghum bicolor ","EC_6.1 ligase forming carbon-oxygen bond & tryptophan-tRNA ligase","protein_coding" "Sobic.008G156300.1","No alias","Sorghum bicolor ","pyridoxal kinase *(SNO1/SOS4) & pyridoxal kinase *(SOS4/SNO1) & EC_2.7 transferase transferring phosphorus-containing group","protein_coding" "Sobic.009G013000.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.009G013100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.009G029700.1","No alias","Sorghum bicolor ","N2-acetylornithine aminotransferase & EC_2.6 transferase transferring nitrogenous group","protein_coding" "Sobic.009G041800.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.009G054100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.009G056200.1","No alias","Sorghum bicolor ","arginine-tRNA ligase & EC_6.1 ligase forming carbon-oxygen bond","protein_coding" "Sobic.009G075800.1","No alias","Sorghum bicolor ","PP5 phosphatase & EC_3.1 hydrolase acting on ester bond","protein_coding" "Sobic.009G079400.1","No alias","Sorghum bicolor ","RNA editing factor *(ECD1)","protein_coding" "Sobic.009G137000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.009G158100.1","No alias","Sorghum bicolor ","ribosome docking factor *(MDM38)","protein_coding" "Sobic.009G163600.1","No alias","Sorghum bicolor ","component *(RRP41) of exosome EXO9 core complex","protein_coding" "Sobic.009G241200.3","No alias","Sorghum bicolor ","RNA editing factor *(ECB2/VAC1)","protein_coding" "Sobic.009G255600.1","No alias","Sorghum bicolor ","core adaptor component *(DDB1) of CUL4-based E3 ubiquitin ligase complexes & core adaptor component *(DDB1) of CUL4-based E3 ubiquitin ligase complexes","protein_coding" "Sobic.010G021900.1","No alias","Sorghum bicolor ","component *(RAD1-LIKE) of 9-1-1 DNA damage sensor complex","protein_coding" "Sobic.010G024600.1","No alias","Sorghum bicolor ","assembly factor IBA57.1 of mitochondrial ISC system transfer phase","protein_coding" "Sobic.010G051500.1","No alias","Sorghum bicolor ","catalytic component of PP1 phosphatase & EC_3.1 hydrolase acting on ester bond","protein_coding" "Sobic.010G073700.1","No alias","Sorghum bicolor ","Hsp60-co-chaperone *(Hsp20) & auxiliary co-chaperone involved in RuBisCo assembly *(CPN20)","protein_coding" "Sobic.010G083900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.010G097500.1","No alias","Sorghum bicolor ","DNA polymerase lambda *(POLL)","protein_coding" "Sobic.010G112300.1","No alias","Sorghum bicolor ","anion channel *(QUAC/ALMT)","protein_coding" "Sobic.010G113000.1","No alias","Sorghum bicolor ","aldehyde dehydrogenase *(ALDH2B) & EC_1.2 oxidoreductase acting on aldehyde or oxo group of donor","protein_coding" "Sobic.010G115400.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.010G125100.1","No alias","Sorghum bicolor ","component *(mL46) of large mitoribosomal-subunit proteome","protein_coding" "Sobic.010G168200.1","No alias","Sorghum bicolor ","acid phosphatase storage protein","protein_coding" "Sobic.010G237800.2","No alias","Sorghum bicolor ","HD2-type histone deacetylase *(HD2/HDT)","protein_coding" "Sobic.010G248900.2","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.010G250100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding" "Sobic.010G252700.1","No alias","Sorghum bicolor ","component *(APC2) of (APC/C)-dependent ubiquitination catalytic core subcomplex","protein_coding" "Sobic.010G273600.1","No alias","Sorghum bicolor ","basic chitinase *(CHIB)","protein_coding" "Sobic.010G277000.1","No alias","Sorghum bicolor ","component *(RRP42) of exosome EXO9 core complex","protein_coding" "Sobic.010G277300.1","No alias","Sorghum bicolor ","sterol delta24 reductase","protein_coding" "Solyc01g006710","No alias","Solanum lycopersicum","ATP-dependent RNA helicase, putative (AHRD V3.3 *** B9RL32_RICCO)","protein_coding" "Solyc01g006860","No alias","Solanum lycopersicum","DNAJ heat shock N-terminal domain-containing protein (AHRD V3.3 *** AT5G06410.1)","protein_coding" "Solyc01g008960","No alias","Solanum lycopersicum","Argonaute 4a","protein_coding" "Solyc01g009090","No alias","Solanum lycopersicum","Serrate RNA effector molecule-like protein (AHRD V3.3 *** A0A0B0MH79_GOSAR)","protein_coding" "Solyc01g010870","No alias","Solanum lycopersicum","S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (AHRD V3.3 *** AT1G26850.2)","protein_coding" "Solyc01g066900","No alias","Solanum lycopersicum","cationic amino acid transporter 9 (AHRD V3.3 --* AT1G05940.2)","protein_coding" "Solyc01g067720","No alias","Solanum lycopersicum","Vesicle-associated 2-2-like protein (AHRD V3.3 *** A0A0B0PX66_GOSAR)","protein_coding" "Solyc01g068160","No alias","Solanum lycopersicum","Isopenicillin N epimerase (AHRD V3.3 *** A0A0B0PU12_GOSAR)","protein_coding" "Solyc01g068480","No alias","Solanum lycopersicum","Embryo defective 2765 (AHRD V3.3 *** Q8L5Y4_ARATH)","protein_coding" "Solyc01g081320","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein, putative (AHRD V3.3 *** B9RJS7_RICCO)","protein_coding" "Solyc01g086810","No alias","Solanum lycopersicum","NBS-LRR disease resistance protein (AHRD V3.3 *** G7IVT3_MEDTR)","protein_coding" "Solyc01g087610","No alias","Solanum lycopersicum","Alpha-N-acetylglucosaminidase (AHRD V3.3 *** Q9ZR45_TOBAC)","protein_coding" "Solyc01g090230","No alias","Solanum lycopersicum","GRAM domain family protein (AHRD V3.3 *** AT1G02120.1)","protein_coding" "Solyc01g091310","No alias","Solanum lycopersicum","Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** AT4G00090.1)","protein_coding" "Solyc01g091350","No alias","Solanum lycopersicum","ATP-dependent DNA helicase 2 subunit KU80 (AHRD V3.3 *** K4AZ75_SOLLC)","protein_coding" "Solyc01g091820","No alias","Solanum lycopersicum","Flap endonuclease GEN-like 1 (AHRD V3.3 *** W9SAV0_9ROSA)","protein_coding" "Solyc01g096910","No alias","Solanum lycopersicum","Vacuolar protein sorting-associated protein 36 (AHRD V3.3 *** A0A1D1ZJY1_9ARAE)","protein_coding" "Solyc01g097590","No alias","Solanum lycopersicum","No description available","protein_coding" "Solyc01g098750","No alias","Solanum lycopersicum","RING/U-box superfamily protein (AHRD V3.3 *** A0A061F239_THECC)","protein_coding" "Solyc01g100500","No alias","Solanum lycopersicum","Microfibrillar-associated protein 1 (AHRD V3.3 *** A0A0K9NTB2_ZOSMR)","protein_coding" "Solyc01g111730","No alias","Solanum lycopersicum","Protein phosphatase 2C family protein (AHRD V3.3 *** AT4G38520.2)","protein_coding" "Solyc02g014090","No alias","Solanum lycopersicum","Peptidoglycan-binding LysM domain-containing protein (AHRD V3.3 *** AT5G23130.1)","protein_coding" "Solyc02g014720","No alias","Solanum lycopersicum","Metal-dependent phosphohydrolase (AHRD V3.3 *-* AT1G17330.1)","protein_coding" "Solyc02g024000","No alias","Solanum lycopersicum","WPP domain-associated protein (AHRD V3.3 *** WAP_SOLLC)","protein_coding" "Solyc02g030120","No alias","Solanum lycopersicum","Subtilisin-like protease (AHRD V3.3 *** A0A0B0N731_GOSAR)","protein_coding" "Solyc02g031860","No alias","Solanum lycopersicum","MAP kinase kinase kinase 12","protein_coding" "Solyc02g062920","No alias","Solanum lycopersicum","Splicing factor u2af large subunit, putative (AHRD V3.3 *-* B9SGJ4_RICCO)","protein_coding" "Solyc02g068100","No alias","Solanum lycopersicum","SWIB complex BAF60b domain-containing family protein (AHRD V3.3 *** B9GJS7_POPTR)","protein_coding" "Solyc02g068200","No alias","Solanum lycopersicum","TCP transcription factor 18","protein_coding" "Solyc02g068420","No alias","Solanum lycopersicum","Nop53 (60S ribosomal biogenesis) protein (AHRD V3.3 *** G7K7B9_MEDTR)","protein_coding" "Solyc02g068480","No alias","Solanum lycopersicum","Ubiquitin carboxyl-terminal hydrolase (AHRD V3.3 *** G7JRQ3_MEDTR)","protein_coding" "Solyc02g077900","No alias","Solanum lycopersicum","peroxisomal leader peptide-processing protease","protein_coding" "Solyc02g082230","No alias","Solanum lycopersicum","Serine/threonine-protein phosphatase (AHRD V3.3 *** K4BA93_SOLLC)","protein_coding" "Solyc02g083130","No alias","Solanum lycopersicum","Regulator of Vps4 activity in the MVB pathway protein (AHRD V3.3 *** AT4G35730.1)","protein_coding" "Solyc02g085250","No alias","Solanum lycopersicum","FAD/NAD(P)-binding oxidoreductase family protein (AHRD V3.3 *** AT5G49555.1)","protein_coding" "Solyc02g089340","No alias","Solanum lycopersicum","DNA-directed RNA polymerase (AHRD V3.3 *** K4BC86_SOLLC)","protein_coding" "Solyc02g090130","No alias","Solanum lycopersicum","vacuolar protein sorting-associated protein, putative (DUF1162) (AHRD V3.3 *** AT3G50380.4)","protein_coding" "Solyc02g090140","No alias","Solanum lycopersicum","No description available","protein_coding" "Solyc02g090200","No alias","Solanum lycopersicum","Zinc-finger domain of monoamine-oxidase A repressor R1 (AHRD V3.3 *-* AT2G23530.1)","protein_coding" "Solyc02g090710","No alias","Solanum lycopersicum","B3 domain-containing protein (AHRD V3.3 *** W9R6M5_9ROSA)","protein_coding" "Solyc02g090860","No alias","Solanum lycopersicum","Phenylalanyl-tRNA synthetase alpha chain, putative (AHRD V3.3 *** G7JG63_MEDTR)","protein_coding" "Solyc02g093050","No alias","Solanum lycopersicum","WRKY transcription factor 8","protein_coding" "Solyc03g006350","No alias","Solanum lycopersicum","Zinc finger transcription factor 23","protein_coding" "Solyc03g025160","No alias","Solanum lycopersicum","Translational activator gcn1 (AHRD V3.3 *** A0A0B0PG07_GOSAR)","protein_coding" "Solyc03g032180","No alias","Solanum lycopersicum","Poly(A) polymerase, putative (AHRD V3.3 *** B9S6T6_RICCO)","protein_coding" "Solyc03g043760","No alias","Solanum lycopersicum","Chromatin SPT2 (AHRD V3.3 *** A0A118JSU1_CYNCS)","protein_coding" "Solyc03g078650","No alias","Solanum lycopersicum","Lipase (AHRD V3.3 *** G7JAK3_MEDTR)","protein_coding" "Solyc03g082490","No alias","Solanum lycopersicum","Reticulocyte-binding 2 a (AHRD V3.3 *** A0A0B0N4X3_GOSAR)","protein_coding" "Solyc03g095230","No alias","Solanum lycopersicum","No description available","protein_coding" "Solyc03g097430","No alias","Solanum lycopersicum","LOW QUALITY:Transmembrane protein, putative (AHRD V3.3 *** A0A072TUA2_MEDTR)","protein_coding" "Solyc03g098050","No alias","Solanum lycopersicum","Calmodulin 6","protein_coding" "Solyc03g111370","No alias","Solanum lycopersicum","C2H2-like zinc finger protein (AHRD V3.3 *** AT5G63280.1)","protein_coding" "Solyc03g113500","No alias","Solanum lycopersicum","Aminoacyl-tRNA synthetase (AHRD V3.3 *** Q2PF39_TRIPR)","protein_coding" "Solyc03g115520","No alias","Solanum lycopersicum","F-box and associated interaction domains-containing protein (AHRD V3.3 --* AT4G10740.1)","protein_coding" "Solyc03g118470","No alias","Solanum lycopersicum","Nudix hydrolase (AHRD V3.3 *** A0A061E9N4_THECC)","protein_coding" "Solyc03g118800","No alias","Solanum lycopersicum","Spliceosome associated protein, putative (AHRD V3.3 *** B9RRM5_RICCO)","protein_coding" "Solyc03g121650","No alias","Solanum lycopersicum","Agenet-like domain-containing protein (AHRD V3.3 *-* A0A103YNT6_CYNCS)","protein_coding" "Solyc04g007560","No alias","Solanum lycopersicum","ALG-2 interacting protein X (AHRD V3.3 *** A0A0B2PBQ1_GLYSO)","protein_coding" "Solyc04g008640","No alias","Solanum lycopersicum","Conserved oligomeric Golgi complex, subunit 3 (AHRD V3.3 *** A0A103Y6H1_CYNCS)","protein_coding" "Solyc04g009620","No alias","Solanum lycopersicum","chorismate synthase 2 precursor","protein_coding" "Solyc04g010100","No alias","Solanum lycopersicum","50S ribosomal protein L33 (AHRD V3.3 *** J7FNN0_OLEEU)","protein_coding" "Solyc04g049630","No alias","Solanum lycopersicum","Dipeptidyl peptidase family member 6 (AHRD V3.3 *** A0A0B0PQJ9_GOSAR)","protein_coding" "Solyc04g076560","No alias","Solanum lycopersicum","Sas10/Utp3/C1D (AHRD V3.3 *** A0A103YDJ6_CYNCS)","protein_coding" "Solyc04g076810","No alias","Solanum lycopersicum","Non-specific serine/threonine protein kinase (AHRD V3.3 *** K4BUB9_SOLLC)","protein_coding" "Solyc04g078320","No alias","Solanum lycopersicum","WD40 repeat-like protein (AHRD V3.3 *** I0YVP9_COCSC)","protein_coding" "Solyc04g079930","No alias","Solanum lycopersicum","Histone deacetylase complex subunit SAP30 (AHRD V3.3 *** A0A0B0N115_GOSAR)","protein_coding" "Solyc04g079990","No alias","Solanum lycopersicum","DNA-3-methyladenine glycosylase, putative (AHRD V3.3 *** A0A061FDE4_THECC)","protein_coding" "Solyc05g006340","No alias","Solanum lycopersicum","Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** A0A061FTT2_THECC)","protein_coding" "Solyc05g007990","No alias","Solanum lycopersicum","Uridine kinase (AHRD V3.3 *** A0A0K9PMG1_ZOSMR)","protein_coding" "Solyc05g008900","No alias","Solanum lycopersicum","Fiber protein Fb34 (AHRD V3.3 *** A0A072VR88_MEDTR)","protein_coding" "Solyc05g013030","No alias","Solanum lycopersicum","26S proteasome non-ATPase regulatory subunit-like protein (AHRD V3.3 *** G7I549_MEDTR)","protein_coding" "Solyc05g017890","No alias","Solanum lycopersicum","THO complex subunit 2 (AHRD V3.3 *-* A0A0B2Q9L7_GLYSO)","protein_coding" "Solyc05g052800","No alias","Solanum lycopersicum","60S ribosomal protein L35a (AHRD V3.3 *** B6VC50_VERFO)","protein_coding" "Solyc05g056280","No alias","Solanum lycopersicum","No description available","protein_coding" "Solyc06g005300","No alias","Solanum lycopersicum","TOX high mobility group box family member 4-A, putative isoform 1 (AHRD V3.3 *** A0A061H046_THECC)","protein_coding" "Solyc06g005500","No alias","Solanum lycopersicum","tomato protein kinase 1b","protein_coding" "Solyc06g016750","No alias","Solanum lycopersicum","nuclear factor Y, subunit C10 (AHRD V3.3 *-* AT1G07980.1)","protein_coding" "Solyc06g017970","No alias","Solanum lycopersicum","Ubiquitin carboxyl-terminal hydrolase 13 (AHRD V3.3 *** W9RB05_9ROSA)","protein_coding" "Solyc06g034020","No alias","Solanum lycopersicum","methionine sulfoxide reductase A3","protein_coding" "Solyc06g050300","No alias","Solanum lycopersicum","Non-specific serine/threonine protein kinase (AHRD V3.3 *** K4C5H5_SOLLC)","protein_coding" "Solyc06g050350","No alias","Solanum lycopersicum","weak chloroplast movement under blue light protein (DUF827) (AHRD V3.3 *** AT2G38370.2)","protein_coding" "Solyc06g051810","No alias","Solanum lycopersicum","XH/XS domain-containing family protein (AHRD V3.3 *** B9HTH7_POPTR)","protein_coding" "Solyc06g053770","No alias","Solanum lycopersicum","DNA-repair protein XRCC4, putative (AHRD V3.3 *** B9RTD9_RICCO)","protein_coding" "Solyc06g060780","No alias","Solanum lycopersicum","phosphatidylserine decarboxylase","protein_coding" "Solyc06g068060","No alias","Solanum lycopersicum","Sister chromatid cohesion protein PDS5 like B-B (AHRD V3.3 *-* A0A0B2PCJ8_GLYSO)","protein_coding" "Solyc06g071200","No alias","Solanum lycopersicum","Transportin-3 (AHRD V3.3 *** A0A0B2QFE0_GLYSO)","protein_coding" "Solyc06g072570","No alias","Solanum lycopersicum","ubiquitin conjugating enzyme","protein_coding" "Solyc06g074110","No alias","Solanum lycopersicum","BHLH transcription factor-like protein (AHRD V3.3 *-* A0A072UK41_MEDTR)","protein_coding" "Solyc07g005730","No alias","Solanum lycopersicum","Low temperature and salt responsive protein family (AHRD V3.3 *** AT4G30660.2)","protein_coding" "Solyc07g006650","No alias","Solanum lycopersicum","Xylose isomerase (AHRD V3.3 *** A0A0V0IEZ8_SOLCH)","protein_coding" "Solyc07g008490","No alias","Solanum lycopersicum","Poly(RC)-binding protein, putative (AHRD V3.3 *-* B9SPR0_RICCO)","protein_coding" "Solyc07g009140","No alias","Solanum lycopersicum","26S proteasome regulatory subunit Rpn7 (AHRD V3.3 *** AT4G24820.2)","protein_coding" "Solyc07g017260","No alias","Solanum lycopersicum","tRNA pseudouridine synthase (AHRD V3.3 *-* A0A0V0ICE9_SOLCH)","protein_coding" "Solyc07g017490","No alias","Solanum lycopersicum","Protein Red (AHRD V3.3 *** A0A0B0MQ48_GOSAR)","protein_coding" "Solyc07g037960","No alias","Solanum lycopersicum","Ectonucleotide pyrophosphatase/phosphodiesterase, putative (AHRD V3.3 *** B9RK58_RICCO)","protein_coding" "Solyc07g041080","No alias","Solanum lycopersicum","Transducin/WD40 repeat-like superfamily protein (AHRD V3.3 *** AT4G29830.1)","protein_coding" "Solyc07g044830","No alias","Solanum lycopersicum","membrane-associated progesterone binding protein 4 (AHRD V3.3 *** AT4G14965.1)","protein_coding" "Solyc07g047830","No alias","Solanum lycopersicum","DUF630 family protein (DUF630 and DUF632) (AHRD V3.3 *** AT2G19090.1)","protein_coding" "Solyc07g062730","No alias","Solanum lycopersicum","LOW QUALITY:Serine/Threonine-kinase pakA-like protein (AHRD V3.3 *-* AT3G15095.1)","protein_coding" "Solyc07g062920","No alias","Solanum lycopersicum","Protein yippee-like (AHRD V3.3 *-* A0A0V0H2B2_SOLCH)","protein_coding" "Solyc07g063650","No alias","Solanum lycopersicum","Ubiquitin carboxyl-terminal hydrolase, putative (AHRD V3.3 *** B9SIG8_RICCO)","protein_coding" "Solyc07g064500","No alias","Solanum lycopersicum","Purple acid phosphatase (AHRD V3.3 *** K4CHD0_SOLLC)","protein_coding" "Solyc08g007710","No alias","Solanum lycopersicum","ATP synthase subunit b (AHRD V3.3 *** A0A1D1Y2F8_9ARAE)","protein_coding" "Solyc08g015650","No alias","Solanum lycopersicum","La-related protein 7 (AHRD V3.3 *** W9RF44_9ROSA)","protein_coding" "Solyc08g048240","No alias","Solanum lycopersicum","Bifunctional protein FolD (AHRD V3.3 *** W9T0H0_9ROSA)","protein_coding" "Solyc08g066500","No alias","Solanum lycopersicum","Homeobox leucine-zipper protein (AHRD V3.3 *** Q8H964_ZINVI)","protein_coding" "Solyc08g067000","No alias","Solanum lycopersicum","Serine/arginine repetitive matrix protein 2 isoform 1 (AHRD V3.3 --* A0A061DPI3_THECC)","protein_coding" "Solyc08g068040","No alias","Solanum lycopersicum","zinc finger FYVE domain protein (AHRD V3.3 *-* AT2G25730.3)","protein_coding" "Solyc08g068270","No alias","Solanum lycopersicum","Rhomboid-like protein (AHRD V3.3 *** K4CM51_SOLLC)","protein_coding" "Solyc08g069120","No alias","Solanum lycopersicum","Arginine/serine-rich splicing factor, putative (AHRD V3.3 *** B9RNP5_RICCO)","protein_coding" "Solyc08g075690","No alias","Solanum lycopersicum","Acyl-CoA-binding protein (AHRD V3.3 *** K7WVA0_SOLTU)","protein_coding" "Solyc08g078320","No alias","Solanum lycopersicum","E3 ubiquitin-protein ligase HOS1 (AHRD V3.3 *** G7JXE3_MEDTR)","protein_coding" "Solyc08g080410","No alias","Solanum lycopersicum","UBX domain-containing protein","protein_coding" "Solyc08g081200","No alias","Solanum lycopersicum","NAD(P)-binding Rossmann-fold superfamily protein (AHRD V3.3 *** AT4G11410.1)","protein_coding" "Solyc09g005470","No alias","Solanum lycopersicum","UDP-glucuronic acid decarboxylase 1 (AHRD V3.3 *-* AT3G53520.2)","protein_coding" "Solyc09g005550","No alias","Solanum lycopersicum","Calcium-dependent protein kinase, putative (AHRD V3.3 *** B9T5W7_RICCO)","protein_coding" "Solyc09g008830","No alias","Solanum lycopersicum","Transcription factor, putative (AHRD V3.3 *** B9RIA5_RICCO)","protein_coding" "Solyc09g009210","No alias","Solanum lycopersicum","transcriptional activator (DUF662) (AHRD V3.3 *** AT2G36410.2)","protein_coding" "Solyc09g010690","No alias","Solanum lycopersicum","Ankyrin repeat family protein (AHRD V3.3 *** B9GJP4_POPTR)","protein_coding" "Solyc09g072800","No alias","Solanum lycopersicum","Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, putative isoform 3 (AHRD V3.3 *-* A0A061DK46_THECC)","protein_coding" "Solyc09g072880","No alias","Solanum lycopersicum","Fluorescent in blue light, chloroplastic-like protein (AHRD V3.3 *** A0A0B0PKQ3_GOSAR)","protein_coding" "Solyc09g074340","No alias","Solanum lycopersicum","Rho GTPase-activating protein (AHRD V3.3 *** A0A0K9PZI3_ZOSMR)","protein_coding" "Solyc09g090120","No alias","Solanum lycopersicum","histone acetyltransferase subunit NuA4-domain protein (AHRD V3.3 *** AT4G14385.1)","protein_coding" "Solyc09g098230","No alias","Solanum lycopersicum","ATP-dependent DNA helicase 2 subunit Ku70-like protein (AHRD V3.3 *** AT1G16970.1)","protein_coding" "Solyc10g005890","No alias","Solanum lycopersicum","DNA damage-inducible protein 1 (AHRD V3.3 *** A0A0B2RHB2_GLYSO)","protein_coding" "Solyc10g009220","No alias","Solanum lycopersicum","RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD V3.3 *** AT4G00830.6)","protein_coding" "Solyc10g047370","No alias","Solanum lycopersicum","Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103Y3G7_CYNCS)","protein_coding" "Solyc10g074710","No alias","Solanum lycopersicum","Kinase family protein (AHRD V3.3 *** D7M6D0_ARALL)","protein_coding" "Solyc11g005250","No alias","Solanum lycopersicum","SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (AHRD V3.3 *** AT3G54460.1)","protein_coding" "Solyc11g006960","No alias","Solanum lycopersicum","Serine/arginine repetitive matrix protein 2 isoform 1 (AHRD V3.3 *** A0A061GKH0_THECC)","protein_coding" "Solyc11g010350","No alias","Solanum lycopersicum","Glucan 1,3-beta-glucosidase (AHRD V3.3 *** A0A151U914_CAJCA)","protein_coding" "Solyc11g012770","No alias","Solanum lycopersicum","Sister chromatid cohesion PDS5 B (AHRD V3.3 *** A0A0B0N9Z2_GOSAR)","protein_coding" "Solyc11g033260","No alias","Solanum lycopersicum","Pseudouridine-5'-phosphate glycosidase (AHRD V3.3 *** A0A0B0NN49_GOSAR)","protein_coding" "Solyc11g040180","No alias","Solanum lycopersicum","mRNA capping enzyme family protein (AHRD V3.3 *** AT3G09100.2)","protein_coding" "Solyc11g044340","No alias","Solanum lycopersicum","pre-mRNA-processing protein 40A (AHRD V3.3 *** AT1G44910.1)","protein_coding" "Solyc11g062190","No alias","Solanum lycopersicum","ADP,ATP carrier protein, mitochondrial (AHRD V3.3 *** ADT1_SOLTU)","protein_coding" "Solyc11g062370","No alias","Solanum lycopersicum","No description available","protein_coding" "Solyc11g062390","No alias","Solanum lycopersicum","ATP synthase subunit beta, chloroplastic (AHRD V3.3 --* ATPB_OENGL)","protein_coding" "Solyc11g065100","No alias","Solanum lycopersicum","Mitochondria fission 1 protein (AHRD V3.3 *** A0A151RUY2_CAJCA)","protein_coding" "Solyc11g067090","No alias","Solanum lycopersicum","Peptidyl-prolyl cis-trans isomerase, putative (AHRD V3.3 *** A0A072VAB3_MEDTR)","protein_coding" "Solyc11g068510","No alias","Solanum lycopersicum","copper ion binding protein (AHRD V3.3 *** AT2G27730.4)","protein_coding" "Solyc12g006310","No alias","Solanum lycopersicum","Endoplasmic reticulum vesicle transporter protein (AHRD V3.3 *** AT3G22290.2)","protein_coding" "Solyc12g006480","No alias","Solanum lycopersicum","Nuclear pore complex Nup205-like protein (AHRD V3.3 *** G7L0K5_MEDTR)","protein_coding" "Solyc12g009140","No alias","Solanum lycopersicum","Proteasome subunit alpha type (AHRD V3.3 *** A0A0V0HRW3_SOLCH)","protein_coding" "Solyc12g009590","No alias","Solanum lycopersicum","Methyl-CpG-binding domain protein (AHRD V3.3 *-* G7JE44_MEDTR)","protein_coding" "Solyc12g014540","No alias","Solanum lycopersicum","PHD finger family protein (AHRD V3.3 *** B9GJG6_POPTR)","protein_coding" "Solyc12g016190","No alias","Solanum lycopersicum","High mobility group family (AHRD V3.3 *** A0A061F3D5_THECC)","protein_coding" "Solyc12g017690","No alias","Solanum lycopersicum","Queuine tRNA-ribosyltransferase accessory subunit 2 (AHRD V3.3 *** K4DD97_SOLLC)","protein_coding" "Solyc12g020000","No alias","Solanum lycopersicum","Arginine/serine-rich coiled-coil 2 (AHRD V3.3 *** A0A0B0NVA2_GOSAR)","protein_coding" "Solyc12g027580","No alias","Solanum lycopersicum","exportin-4 protein (AHRD V3.3 *** AT3G04490.2)","protein_coding" "Solyc12g038820","No alias","Solanum lycopersicum","HAD-superfamily hydrolase, subfamily IIA (AHRD V3.3 *** A0A0K9P0R8_ZOSMR)","protein_coding" "Solyc12g056100","No alias","Solanum lycopersicum","Ubiquitin conjugating enzyme E2-like (AHRD V3.3 *** Q38JG8_SOLTU)","protein_coding" "Solyc12g056110","No alias","Solanum lycopersicum","V-type proton ATPase subunit E (AHRD V3.3 *** VATE_CITLI)","protein_coding" "Solyc12g095780","No alias","Solanum lycopersicum","hydroxyproline-rich glycoprotein family protein (AHRD V3.3 *** AT1G76660.1)","protein_coding" "Sopen01g037090","No alias","Solanum pennellii","Ku70/Ku80 beta-barrel domain","protein_coding" "Sopen09g036170","No alias","Solanum pennellii","Ku70/Ku80 N-terminal alpha/beta domain","protein_coding"