Heatmap: Cluster_160 (HCCA clusters)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
4 h after light
8 h after light
12 h after light
4 h after dark
8 h after dark
12 h after dark
-0.22 0.68 0.5 -0.06 -0.62 -0.93
-0.01 0.26 0.36 -0.36 -0.32 -0.09
0.16 0.96 0.94 -1.17 -1.18 -2.88
-0.17 0.82 0.65 -0.41 -1.2 -0.76
-0.17 0.68 0.6 -0.3 -0.9 -0.65
0.04 0.71 0.62 -0.73 -0.9 -0.59
-0.08 0.56 0.58 -0.14 -0.8 -0.73
0.12 0.79 0.73 -0.54 -1.72 -0.92
Sopen01g048160 At5g60220 expression profile </span></div></td> <td class="value">-0.03</td> <td class="value">0.35</td> <td class="value">0.66</td> <td class="value">-0.72</td> <td class="value">-0.64</td> <td class="value">-0.13</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/41909" class="qtip_tooltip" qtip_href="/sequence/tooltip/41909">Sopen02g015370</a></span></div></td> <td class="value">-0.18</td> <td class="value">0.76</td> <td class="value">0.44</td> <td class="value">-0.21</td> <td class="value">-0.57</td> <td class="value">-0.93</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/43019" class="qtip_tooltip" qtip_href="/sequence/tooltip/43019">Sopen02g026470</a></span></div></td> <td class="value">-0.11</td> <td class="value">0.68</td> <td class="value">0.38</td> <td class="value">-0.54</td> <td class="value">-0.54</td> <td class="value">-0.33</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/44689" class="qtip_tooltip" qtip_href="/sequence/tooltip/44689">Sopen03g004870</a></span></div></td> <td class="value">0.01</td> <td class="value">0.19</td> <td class="value">0.3</td> <td class="value">-0.2</td> <td class="value">-0.31</td> <td class="value">-0.09</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/44724" class="qtip_tooltip" qtip_href="/sequence/tooltip/44724">Sopen03g005220</a></span></div></td> <td class="value">-0.38</td> <td class="value">0.47</td> <td class="value">0.56</td> <td class="value">-0.22</td> <td class="value">-0.66</td> <td class="value">-0.18</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/47525" class="qtip_tooltip" qtip_href="/sequence/tooltip/47525">Sopen03g033230</a></span></div></td> <td class="value">-3.12</td> <td class="value">0.65</td> <td class="value">1.62</td> <td class="value">-0.52</td> <td class="value">-3.07</td> <td class="value">-1.24</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/47714" class="qtip_tooltip" qtip_href="/sequence/tooltip/47714">Sopen03g035120</a></span></div></td> <td class="value">-0.16</td> <td class="value">0.5</td> <td class="value">0.24</td> <td class="value">-0.23</td> <td class="value">-0.28</td> <td class="value">-0.25</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/50759" class="qtip_tooltip" qtip_href="/sequence/tooltip/50759">Sopen04g024780</a></span></div></td> <td class="value">-0.42</td> <td class="value">0.64</td> <td class="value">0.89</td> <td class="value">-0.17</td> <td class="value">-0.7</td> <td class="value">-1.53</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/51081" class="qtip_tooltip" qtip_href="/sequence/tooltip/51081">Sopen04g028000</a></span></div></td> <td class="value">-0.12</td> <td class="value">0.56</td> <td class="value">0.79</td> <td class="value">-0.39</td> <td class="value">-0.65</td> <td class="value">-1.04</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/51122" class="qtip_tooltip" qtip_href="/sequence/tooltip/51122">Sopen04g028410</a></span></div></td> <td class="value">-0.09</td> <td class="value">0.46</td> <td class="value">0.57</td> <td class="value">-0.27</td> <td class="value">-0.5</td> <td class="value">-0.57</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/51848" class="qtip_tooltip" qtip_href="/sequence/tooltip/51848">Sopen04g035670</a></span></div></td> <td class="value">-0.09</td> <td class="value">0.33</td> <td class="value">0.53</td> <td class="value">-0.48</td> <td class="value">-0.57</td> <td class="value">-0.04</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/51948" class="qtip_tooltip" qtip_href="/sequence/tooltip/51948">Sopen05g001030</a></span></div></td> <td class="value">-0.13</td> <td class="value">0.09</td> <td class="value">0.29</td> <td class="value">-0.04</td> <td class="value">-0.16</td> <td class="value">-0.1</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/52033" class="qtip_tooltip" qtip_href="/sequence/tooltip/52033">Sopen05g001880</a></span></div></td> <td class="value">0.27</td> <td class="value">1.2</td> <td class="value">1.14</td> <td class="value">-1.98</td> <td class="value">-7.74</td> <td class="value">-4.46</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/52143" class="qtip_tooltip" qtip_href="/sequence/tooltip/52143">Sopen05g002980</a></span></div></td> <td class="value">-0.02</td> <td class="value">0.61</td> <td class="value">0.72</td> <td class="value">-0.72</td> <td class="value">-0.43</td> <td class="value">-1.03</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/52143" class="qtip_tooltip" qtip_href="/sequence/tooltip/52143">Sopen05g002980</a></span></div></td> <td class="value">0.31</td> <td class="value">0.31</td> <td class="value">0.65</td> <td class="value">-0.5</td> <td class="value">-1.06</td> <td class="value">-0.38</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/52628" class="qtip_tooltip" qtip_href="/sequence/tooltip/52628">Sopen05g007830</a></span></div></td> <td class="value">-0.32</td> <td class="value">0.47</td> <td class="value">0.76</td> <td class="value">-0.25</td> <td class="value">-0.69</td> <td class="value">-0.6</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/55291" class="qtip_tooltip" qtip_href="/sequence/tooltip/55291">Sopen05g034460</a></span></div></td> <td class="value">-0.28</td> <td class="value">1.17</td> <td class="value">1.02</td> <td class="value">-1.18</td> <td class="value">-2.5</td> <td class="value">-1.85</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/57536" class="qtip_tooltip" qtip_href="/sequence/tooltip/57536">Sopen06g022920</a></span></div></td> <td class="value">-0.25</td> <td class="value">1.09</td> <td class="value">0.77</td> <td class="value">-0.93</td> <td class="value">-2.04</td> <td class="value">-0.85</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/57658" class="qtip_tooltip" qtip_href="/sequence/tooltip/57658">Sopen06g024140</a></span></div></td> <td class="value">-0.04</td> <td class="value">0.28</td> <td class="value">0.7</td> <td class="value">-0.23</td> <td class="value">-0.77</td> <td class="value">-0.42</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/57735" class="qtip_tooltip" qtip_href="/sequence/tooltip/57735">Sopen06g024910</a></span></div></td> <td class="value">0.13</td> <td class="value">0.34</td> <td class="value">0.27</td> <td class="value">-0.26</td> <td class="value">-0.44</td> <td class="value">-0.21</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/58306" class="qtip_tooltip" qtip_href="/sequence/tooltip/58306">Sopen06g030620</a></span></div></td> <td class="value">0.0</td> <td class="value">0.56</td> <td class="value">0.58</td> <td class="value">-0.2</td> <td class="value">-0.86</td> <td class="value">-0.71</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/58306" class="qtip_tooltip" qtip_href="/sequence/tooltip/58306">Sopen06g030620</a></span></div></td> <td class="value">-</td> <td class="value">-</td> <td class="value">-</td> <td class="value">-</td> <td class="value">-</td> <td class="value">-</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/58342" class="qtip_tooltip" qtip_href="/sequence/tooltip/58342">Sopen06g030980</a></span></div></td> <td class="value">-0.13</td> <td class="value">0.58</td> <td class="value">1.01</td> <td class="value">-0.17</td> <td class="value">-1.84</td> <td class="value">-1.26</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/58678" class="qtip_tooltip" qtip_href="/sequence/tooltip/58678">Sopen06g034340</a></span></div></td> <td class="value">0.12</td> <td class="value">0.4</td> <td class="value">0.43</td> <td class="value">-0.25</td> <td class="value">-0.73</td> <td class="value">-0.33</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/58815" class="qtip_tooltip" qtip_href="/sequence/tooltip/58815">Sopen06g035710</a></span></div></td> <td class="value">0.34</td> <td class="value">0.61</td> <td class="value">0.98</td> <td class="value">-1.09</td> <td class="value">-1.63</td> <td class="value">-1.15</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/58879" class="qtip_tooltip" qtip_href="/sequence/tooltip/58879">Sopen07g001350</a></span></div></td> <td class="value">0.22</td> <td class="value">0.88</td> <td class="value">1.12</td> <td class="value">-1.62</td> <td class="value">-2.46</td> <td class="value">-1.64</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/60786" class="qtip_tooltip" qtip_href="/sequence/tooltip/60786">Sopen07g020420</a></span></div></td> <td class="value">-0.18</td> <td class="value">0.21</td> <td class="value">0.37</td> <td class="value">-0.27</td> <td class="value">-0.14</td> <td class="value">-0.1</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/61173" class="qtip_tooltip" qtip_href="/sequence/tooltip/61173">Sopen07g024290</a></span></div></td> <td class="value">-0.01</td> <td class="value">0.88</td> <td class="value">0.78</td> <td class="value">-0.27</td> <td class="value">-1.68</td> <td class="value">-1.72</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/61347" class="qtip_tooltip" qtip_href="/sequence/tooltip/61347">Sopen07g026030</a></span></div></td> <td class="value">-0.03</td> <td class="value">0.38</td> <td class="value">0.63</td> <td class="value">-0.34</td> <td class="value">-0.58</td> <td class="value">-0.5</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/61440" class="qtip_tooltip" qtip_href="/sequence/tooltip/61440">Sopen07g026960</a></span></div></td> <td class="value">-0.16</td> <td class="value">1.13</td> <td class="value">0.94</td> <td class="value">-1.43</td> <td class="value">-2.4</td> <td class="value">-1.2</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/61647" class="qtip_tooltip" qtip_href="/sequence/tooltip/61647">Sopen07g029030</a></span></div></td> <td class="value">-0.36</td> <td class="value">0.3</td> <td class="value">0.98</td> <td class="value">-0.28</td> <td class="value">-0.94</td> <td class="value">-0.6</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/62297" class="qtip_tooltip" qtip_href="/sequence/tooltip/62297">Sopen08g001710</a></span></div></td> <td class="value">0.43</td> <td class="value">0.54</td> <td class="value">0.69</td> <td class="value">-1.41</td> <td class="value">-0.92</td> <td class="value">-0.53</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/64120" class="qtip_tooltip" qtip_href="/sequence/tooltip/64120">Sopen08g019940</a></span></div></td> <td class="value">-0.07</td> <td class="value">1.2</td> <td class="value">1.46</td> <td class="value">-</td> <td class="value">-</td> <td class="value">-</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/64254" class="qtip_tooltip" qtip_href="/sequence/tooltip/64254">Sopen08g021280</a></span></div></td> <td class="value">0.12</td> <td class="value">1.1</td> <td class="value">1.09</td> <td class="value">-1.4</td> <td class="value">-3.59</td> <td class="value">-2.49</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/64551" class="qtip_tooltip" qtip_href="/sequence/tooltip/64551">Sopen08g024250</a></span></div></td> <td class="value">-0.75</td> <td class="value">1.16</td> <td class="value">1.25</td> <td class="value">-0.46</td> <td class="value">-</td> <td class="value">-3.86</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/64995" class="qtip_tooltip" qtip_href="/sequence/tooltip/64995">Sopen08g028690</a></span></div></td> <td class="value">-0.03</td> <td class="value">0.55</td> <td class="value">0.67</td> <td class="value">-0.47</td> <td class="value">-0.62</td> <td class="value">-0.75</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/65391" class="qtip_tooltip" qtip_href="/sequence/tooltip/65391">Sopen09g002060</a></span></div></td> <td class="value">0.03</td> <td class="value">0.2</td> <td class="value">0.17</td> <td class="value">-0.04</td> <td class="value">-0.24</td> <td class="value">-0.18</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/65921" class="qtip_tooltip" qtip_href="/sequence/tooltip/65921">Sopen09g007360</a></span></div></td> <td class="value">0.04</td> <td class="value">0.4</td> <td class="value">0.47</td> <td class="value">-0.18</td> <td class="value">-0.65</td> <td class="value">-0.42</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/68741" class="qtip_tooltip" qtip_href="/sequence/tooltip/68741">Sopen09g035560</a></span></div></td> <td class="value">-0.65</td> <td class="value">0.58</td> <td class="value">1.47</td> <td class="value">-0.66</td> <td class="value">-1.51</td> <td class="value">-3.09</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/68955" class="qtip_tooltip" qtip_href="/sequence/tooltip/68955">Sopen10g002190</a></span></div></td> <td class="value">0.04</td> <td class="value">0.57</td> <td class="value">0.53</td> <td class="value">-0.21</td> <td class="value">-0.89</td> <td class="value">-0.64</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/69096" class="qtip_tooltip" qtip_href="/sequence/tooltip/69096">Sopen10g003600</a></span></div></td> <td class="value">0.06</td> <td class="value">0.61</td> <td class="value">0.66</td> <td class="value">-0.16</td> <td class="value">-1.24</td> <td class="value">-0.89</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/74873" class="qtip_tooltip" qtip_href="/sequence/tooltip/74873">Sopen11g026190</a></span></div></td> <td class="value">-0.0</td> <td class="value">0.13</td> <td class="value">0.13</td> <td class="value">-0.04</td> <td class="value">-0.1</td> <td class="value">-0.14</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/75713" class="qtip_tooltip" qtip_href="/sequence/tooltip/75713">Sopen12g004670</a></span></div></td> <td class="value">-0.19</td> <td class="value">0.58</td> <td class="value">0.58</td> <td class="value">-0.44</td> <td class="value">-0.78</td> <td class="value">-0.29</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/75740" class="qtip_tooltip" qtip_href="/sequence/tooltip/75740">Sopen12g004940</a></span></div></td> <td class="value">-0.02</td> <td class="value">0.21</td> <td class="value">0.25</td> <td class="value">-0.16</td> <td class="value">-0.24</td> <td class="value">-0.11</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/75958" class="qtip_tooltip" qtip_href="/sequence/tooltip/75958">Sopen12g007120</a></span></div></td> <td class="value">0.04</td> <td class="value">0.11</td> <td class="value">0.12</td> <td class="value">-0.06</td> <td class="value">-0.19</td> <td class="value">-0.05</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/77379" class="qtip_tooltip" qtip_href="/sequence/tooltip/77379">Sopen12g021330</a></span></div></td> <td class="value">0.03</td> <td class="value">0.39</td> <td class="value">0.82</td> <td class="value">-0.78</td> <td class="value">-0.8</td> <td class="value">-0.43</td> </tr> <tr class="heatmap"> <td><div><span><a href="/sequence/view/78612" class="qtip_tooltip" qtip_href="/sequence/tooltip/78612">Sopen12g033660</a></span></div></td> <td class="value">-0.1</td> <td class="value">0.72</td> <td class="value">1.19</td> <td class="value">-2.11</td> <td class="value">-1.69</td> <td class="value">-0.73</td> </tr> </tbody> </table> <div class="panel"> <div class="panel-body"> <h3>Details</h3> <p><span style="color:#333333;font-weight:bold">Dark gray</span> cells indicate values where the raw expression is zero (cannot be log-transformed). <span style="color:#0000FF;font-weight:bold">Blue</span> cells indicate samples where the expression of the gene is below average and <span style="color:#FF0000;font-weight:bold">red</span> cells indicate the gene is expressed above average in the sample. White cells are average.</p> </div> </div> </div> </div> </div> <footer class="footer" id="footer"> <div class="container"> <div class="row"> <div class="col-xs-2"><strong class="text-muted"><a href="/features" class="text-muted">CoNekT</a></strong></div> <div class="col-xs-2"><a href="/about" class="text-muted">About</a></div> <div class="col-xs-2"><a href="/contact" class="text-muted">Contact</a></div> <div class="col-xs-2"><a href="/disclaimer" class="text-muted">Disclaimer</a></div> <div class="col-xs-2"><a href="/privacy" class="text-muted">Privacy policy</a></div> </div> </div> </footer> <div class="modal" id="helpModal" tabindex="-1" role="dialog" aria-labelledby="helpModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> <div class="modal" id="loaderModal" tabindex="-1" role="dialog" aria-labelledby="loaderModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> <div class="modal-body"> <div id="leafy_loader"></div> <p class="text-center text-muted" id="leafy_loader_text">Loading ... please wait ... </p> <p class="text-center" id="leafy_loader_close_btn" style="display:none"><button type="button" class="btn btn-primary" data-dismiss="modal" style>Close</button></p> </div> </div> </div> </div> <script src="/static/js/jquery.min.js"></script> <script src="/static/js/bootstrap.min.js"></script> <script src="/static/js/stupidtable.min.js"></script> <script src="/static/js/TweenMax.min.js"></script> <script src="/static/js/jquery.qtip.min.js"></script> <script src="/static/js/planet_loader.js"></script> <script> function init_qtip() { $('.qtip_tooltip').each(function() { $(this).qtip({ content: { text: function(event, api) { $.ajax({ url: api.elements.target.attr('qtip_href') }) .then(function(content) { // Set the tooltip content upon successful retrieval api.set('content.text', content); }, function(xhr, status, error) { // Upon failure... set the tooltip content to error api.set('content.text', status + ': ' + error); }); return 'Loading...'; // Set some initial text } }, show: { effect: function() { $(this).fadeTo(500, 1); } }, hide: { effect: function() { $(this).fadeTo(500, 0); } }, position: { viewport: $(window) }, style: 'qtip-bootstrap' }); }); } $(function () { init_qtip(); $("#leafy_loader").html(get_loader_svg('loader_leafy')); init_planet_loader('loader_leafy'); $('[data-toggle="popover"]').popover({container: 'body'}); $('a[data-target=#helpModal], abbr[data-target=#helpModal]').click(function(ev) { ev.preventDefault(); var target = $(this).attr("href"); // load the url and show modal on success $("#helpModal .modal-content").load(target, function() { $("#helpModal").modal("show"); }); }); }); </script> <script src="/static/js/planet_pagination.js"></script> <script src="/static/js/planet_ajax_table.js"></script> <script type="text/javascript"> var csrf_token = "IjIwODUwNzY5MWEwNjEyYmRlMzMwZTEyZWYyMjBmYTE3ODNlZTFhZjUi.GhiR2Q.8-fyfbfG82JMVyzoRcyTDBiOY1M"; $.ajaxSetup({ beforeSend: function(xhr, settings) { if (!/^(GET|HEAD|OPTIONS|TRACE)$/i.test(settings.type) && !this.crossDomain) { xhr.setRequestHeader("X-CSRFToken", csrf_token); } } }); </script> <script src="/static/js/jquery.hottie.js"></script> <script src="/static/js/table2CSV.js"> </script> <script> $( document ).ready(function() { $('td.value').hottie({ colorArray : [ "#0000FF", "#FFFFFF", "#FF0000" ], symmetrical : true }); function prepare_download() { var csv_data = $("#heatmap-table").table2CSV({delivery:'value'}); $("#download").attr('href', 'data:text/plain;charset=utf-8,' + encodeURIComponent(csv_data)); $("#download").attr('download', "table.csv"); } prepare_download(); function tableTransform(objTable) { if (typeof objTable != 'undefined') { objTable.each(function () { var $this = $(this); var newrows = []; $this.find("tbody tr, thead tr").each(function () { var i = 0; $(this).find("td, th").each(function () { i++; if (newrows[i] === undefined) { newrows[i] = $("<tr></tr>"); } newrows[i].append($(this)); }); }); $this.find("tr").remove(); $.each(newrows, function () { $this.append(this); }); }); //switch old th to td objTable.find('th').wrapInner('<td />').contents().unwrap(); //move first tr into thead var thead = objTable.find("thead"); var thRows = objTable.find("tr:first"); var copy = thRows.clone(true).appendTo("thead"); thRows.remove(); //switch td in thead into th objTable.find('thead tr td').wrapInner('<th class="rotated" />').contents().unwrap(); //add tr back into tfoot objTable.find('tfoot').append("<tr></tr>"); //add tds into tfoot objTable.find('tbody tr:first td').each(function () { objTable.find('tfoot tr').append("<td> </td>"); }); return false; } } $("#transpose").click(function(){ $('.qtip_tooltip').qtip('destroy', true); tableTransform($("#heatmap-table")); init_qtip(); //defined in base.html prepare_download(); return false; }); }); </script> </body> </html>