"sequence_id","alias","species","description","type"
"414166","No alias","Selaginella moellendorffii ","DNA ligase IV","protein_coding"
"96808","No alias","Selaginella moellendorffii ","DNA LIGASE 6","protein_coding"
"97073","No alias","Selaginella moellendorffii ","DNA ligase 1","protein_coding"
"A4A49_08255","No alias","Nicotiana attenuata","dna ligase 4","protein_coding"
"A4A49_15784","No alias","Nicotiana attenuata","dna ligase 6","protein_coding"
"A4A49_37171","No alias","Nicotiana attenuata","dna ligase 1","protein_coding"
"At1g08130","No alias","Arabidopsis thaliana","DNA ligase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42572]","protein_coding"
"At1g49250","No alias","Arabidopsis thaliana","DNA ligase [Source:UniProtKB/TrEMBL;Acc:F4I1P7]","protein_coding"
"At1g66730","No alias","Arabidopsis thaliana","DNA ligase 6 [Source:UniProtKB/Swiss-Prot;Acc:F4HPZ9]","protein_coding"
"At5g57160","No alias","Arabidopsis thaliana","DNA ligase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LL84]","protein_coding"
"Bradi2g46780","No alias","Brachypodium distachyon","DNA LIGASE 6","protein_coding"
"Bradi3g29530","No alias","Brachypodium distachyon","DNA ligase 1","protein_coding"
"Bradi5g20927","No alias","Brachypodium distachyon","DNA ligase IV","protein_coding"
"Brara.F00544.1","No alias","Brassica rapa","DNA replication DNA ligase *(LIG1) & DNA ligase *(LIG1) & EC_6.5 ligase forming phosphoric ester bond","protein_coding"
"Brara.G02666.1","No alias","Brassica rapa","DNA ligase *(LIG6) & EC_6.5 ligase forming phosphoric ester bond","protein_coding"
"Brara.J01141.1","No alias","Brassica rapa","DNA ligase component *(LIG4) of LIG4-XRCC4 ligase complex & EC_6.5 ligase forming phosphoric ester bond","protein_coding"
"Cre06.g277801","No alias","Chlamydomonas reinhardtii","DNA ligase IV","protein_coding"
"Cre06.g278177","No alias","Chlamydomonas reinhardtii","DNA LIGASE 6","protein_coding"
"Cre07.g325716","No alias","Chlamydomonas reinhardtii","DNA ligase 1","protein_coding"
"Cre10.g433550","No alias","Chlamydomonas reinhardtii","DNA ligase IV","protein_coding"
"evm.model.contig_3450.15","No alias","Porphyridium purpureum","(at1g66730 : 353.0) Encodes a novel plant specific DNA ligase that is involved in seed germination and DNA repair.; DNA LIGASE 6 (LIG6); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, seed germination, DNA recombination, DNA replication; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), DNA repair metallo-beta-lactamase (InterPro:IPR011084), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059); BEST Arabidopsis thaliana protein match is: DNA ligase 1 (TAIR:AT1G08130.1); Has 4468 Blast hits to 4373 proteins in 907 species: Archae - 366; Bacteria - 1648; Metazoa - 644; Fungi - 681; Plants - 268; Viruses - 157; Other Eukaryotes - 704 (source: NCBI BLink). & (q7x7e9|dnl4_orysa : 90.5) Putative DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (Polydeoxyribonucleotide synthase [ATP] 4) - Oryza sativa (Rice) & (reliability: 706.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4435.1","No alias","Porphyridium purpureum","(at5g57160 : 191.0) Encodes the Arabidopsis orthologue of the yeast and mammalian DNA ligase IV.  Involved in the repair of DNA damage but, unlike in yeast, not required for T-DNA integration.  Interacts with the Arabidopsis homologue of XRCC4.; ATLIG4; FUNCTIONS IN: protein binding, DNA ligase (ATP) activity; INVOLVED IN: double-strand break repair, response to X-ray, response to DNA damage stimulus; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059), ATP-dependent DNA ligase (InterPro:IPR000977), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: DNA ligase 1 (TAIR:AT1G08130.1); Has 7656 Blast hits to 6618 proteins in 1076 species: Archae - 317; Bacteria - 1869; Metazoa - 2250; Fungi - 907; Plants - 304; Viruses - 214; Other Eukaryotes - 1795 (source: NCBI BLink). & (q7x7e9|dnl4_orysa : 155.0) Putative DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (Polydeoxyribonucleotide synthase [ATP] 4) - Oryza sativa (Rice) & (reliability: 382.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_730.1","No alias","Porphyridium purpureum","(at1g08130 : 533.0) Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways.  Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus.; DNA ligase 1 (LIG1); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, DNA replication, DNA recombination; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059); BEST Arabidopsis thaliana protein match is: ATP-dependent DNA ligase (TAIR:AT1G49250.1); Has 3556 Blast hits to 3521 proteins in 879 species: Archae - 298; Bacteria - 1538; Metazoa - 375; Fungi - 434; Plants - 112; Viruses - 159; Other Eukaryotes - 640 (source: NCBI BLink). & (q7x7e9|dnl4_orysa : 84.0) Putative DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (Polydeoxyribonucleotide synthase [ATP] 4) - Oryza sativa (Rice) & (reliability: 1066.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000754.31","No alias","Cyanophora paradoxa","(at1g08130 : 306.0) Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways.  Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus.; DNA ligase 1 (LIG1); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, DNA replication, DNA recombination; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059); BEST Arabidopsis thaliana protein match is: ATP-dependent DNA ligase (TAIR:AT1G49250.1); Has 3556 Blast hits to 3521 proteins in 879 species: Archae - 298; Bacteria - 1538; Metazoa - 375; Fungi - 434; Plants - 112; Viruses - 159; Other Eukaryotes - 640 (source: NCBI BLink). & (q7x7e9|dnl4_orysa : 80.9) Putative DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (Polydeoxyribonucleotide synthase [ATP] 4) - Oryza sativa (Rice) & (reliability: 612.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000789.19","No alias","Cyanophora paradoxa","(at5g57160 : 87.0) Encodes the Arabidopsis orthologue of the yeast and mammalian DNA ligase IV.  Involved in the repair of DNA damage but, unlike in yeast, not required for T-DNA integration.  Interacts with the Arabidopsis homologue of XRCC4.; ATLIG4; FUNCTIONS IN: protein binding, DNA ligase (ATP) activity; INVOLVED IN: double-strand break repair, response to X-ray, response to DNA damage stimulus; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059), ATP-dependent DNA ligase (InterPro:IPR000977), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: DNA ligase 1 (TAIR:AT1G08130.1); Has 7656 Blast hits to 6618 proteins in 1076 species: Archae - 317; Bacteria - 1869; Metazoa - 2250; Fungi - 907; Plants - 304; Viruses - 214; Other Eukaryotes - 1795 (source: NCBI BLink). & (reliability: 174.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000796.13","No alias","Cyanophora paradoxa","(at1g66730 : 85.5) Encodes a novel plant specific DNA ligase that is involved in seed germination and DNA repair.; DNA LIGASE 6 (LIG6); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, seed germination, DNA recombination, DNA replication; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), DNA repair metallo-beta-lactamase (InterPro:IPR011084), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059); BEST Arabidopsis thaliana protein match is: DNA ligase 1 (TAIR:AT1G08130.1); Has 4468 Blast hits to 4373 proteins in 907 species: Archae - 366; Bacteria - 1648; Metazoa - 644; Fungi - 681; Plants - 268; Viruses - 157; Other Eukaryotes - 704 (source: NCBI BLink). & (reliability: 171.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001718.2","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001718.3","No alias","Cyanophora paradoxa","(at5g57160 : 184.0) Encodes the Arabidopsis orthologue of the yeast and mammalian DNA ligase IV.  Involved in the repair of DNA damage but, unlike in yeast, not required for T-DNA integration.  Interacts with the Arabidopsis homologue of XRCC4.; ATLIG4; FUNCTIONS IN: protein binding, DNA ligase (ATP) activity; INVOLVED IN: double-strand break repair, response to X-ray, response to DNA damage stimulus; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059), ATP-dependent DNA ligase (InterPro:IPR000977), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: DNA ligase 1 (TAIR:AT1G08130.1); Has 7656 Blast hits to 6618 proteins in 1076 species: Archae - 317; Bacteria - 1869; Metazoa - 2250; Fungi - 907; Plants - 304; Viruses - 214; Other Eukaryotes - 1795 (source: NCBI BLink). & (q7x7e9|dnl4_orysa : 96.7) Putative DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (Polydeoxyribonucleotide synthase [ATP] 4) - Oryza sativa (Rice) & (reliability: 368.0) &  (original description: no original description)","protein_coding"
"Glyma.02G090332","No alias","Glycine max","DNA LIGASE 6","protein_coding"
"Glyma.11G193100","No alias","Glycine max","DNA ligase 1","protein_coding"
"Glyma.12G080900","No alias","Glycine max","DNA ligase 1","protein_coding"
"Glyma.15G166700","No alias","Glycine max","DNA ligase IV","protein_coding"
"Glyma.18G292900","No alias","Glycine max","DNA LIGASE 6","protein_coding"
"GRMZM2G071304","No alias","Zea mays","DNA ligase 1","protein_coding"
"GRMZM2G427067","No alias","Zea mays","DNA LIGASE 6","protein_coding"
"GRMZM5G851753","No alias","Zea mays","DNA ligase IV","protein_coding"
"HORVU1Hr1G044350.16","No alias","Hordeum vulgare","EC_6.5 ligase forming phosphoric ester bond","protein_coding"
"HORVU2Hr1G100690.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G100740.27","No alias","Hordeum vulgare","DNA ligase component *(LIG4) of LIG4-XRCC4 ligase complex & EC_6.5 ligase forming phosphoric ester bond","protein_coding"
"Kfl00023_0450","kfl00023_0450_v1.1","Klebsormidium nitens","(at5g57160 : 499.0) Encodes the Arabidopsis orthologue of the yeast and mammalian DNA ligase IV.  Involved in the repair of DNA damage but, unlike in yeast, not required for T-DNA integration.  Interacts with the Arabidopsis homologue of XRCC4.; ATLIG4; FUNCTIONS IN: protein binding, DNA ligase (ATP) activity; INVOLVED IN: double-strand break repair, response to X-ray, response to DNA damage stimulus; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059), ATP-dependent DNA ligase (InterPro:IPR000977), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: DNA ligase 1 (TAIR:AT1G08130.1); Has 7656 Blast hits to 6618 proteins in 1076 species: Archae - 317; Bacteria - 1869; Metazoa - 2250; Fungi - 907; Plants - 304; Viruses - 214; Other Eukaryotes - 1795 (source: NCBI BLink). & (q7x7e9|dnl4_orysa : 397.0) Putative DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (Polydeoxyribonucleotide synthase [ATP] 4) - Oryza sativa (Rice) & (reliability: 998.0) &  (original description: no original description)","protein_coding"
"Kfl00046_0270","kfl00046_0270_v1.1","Klebsormidium nitens","(at5g57160 : 786.0) Encodes the Arabidopsis orthologue of the yeast and mammalian DNA ligase IV.  Involved in the repair of DNA damage but, unlike in yeast, not required for T-DNA integration.  Interacts with the Arabidopsis homologue of XRCC4.; ATLIG4; FUNCTIONS IN: protein binding, DNA ligase (ATP) activity; INVOLVED IN: double-strand break repair, response to X-ray, response to DNA damage stimulus; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059), ATP-dependent DNA ligase (InterPro:IPR000977), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: DNA ligase 1 (TAIR:AT1G08130.1); Has 7656 Blast hits to 6618 proteins in 1076 species: Archae - 317; Bacteria - 1869; Metazoa - 2250; Fungi - 907; Plants - 304; Viruses - 214; Other Eukaryotes - 1795 (source: NCBI BLink). & (q7x7e9|dnl4_orysa : 592.0) Putative DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (Polydeoxyribonucleotide synthase [ATP] 4) - Oryza sativa (Rice) & (reliability: 1572.0) &  (original description: no original description)","protein_coding"
"Kfl00242_0010","kfl00242_0010_v1.1","Klebsormidium nitens","(at1g08130 : 782.0) Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways.  Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus.; DNA ligase 1 (LIG1); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, DNA replication, DNA recombination; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059); BEST Arabidopsis thaliana protein match is: ATP-dependent DNA ligase (TAIR:AT1G49250.1); Has 3556 Blast hits to 3521 proteins in 879 species: Archae - 298; Bacteria - 1538; Metazoa - 375; Fungi - 434; Plants - 112; Viruses - 159; Other Eukaryotes - 640 (source: NCBI BLink). & (q7x7e9|dnl4_orysa : 110.0) Putative DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (Polydeoxyribonucleotide synthase [ATP] 4) - Oryza sativa (Rice) & (reliability: 1564.0) &  (original description: no original description)","protein_coding"
"Kfl00698_0030","kfl00698_0030_v1.1","Klebsormidium nitens","(at1g66730 : 736.0) Encodes a novel plant specific DNA ligase that is involved in seed germination and DNA repair.; DNA LIGASE 6 (LIG6); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, seed germination, DNA recombination, DNA replication; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), DNA repair metallo-beta-lactamase (InterPro:IPR011084), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059); BEST Arabidopsis thaliana protein match is: DNA ligase 1 (TAIR:AT1G08130.1); Has 4468 Blast hits to 4373 proteins in 907 species: Archae - 366; Bacteria - 1648; Metazoa - 644; Fungi - 681; Plants - 268; Viruses - 157; Other Eukaryotes - 704 (source: NCBI BLink). & (q7x7e9|dnl4_orysa : 85.9) Putative DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (Polydeoxyribonucleotide synthase [ATP] 4) - Oryza sativa (Rice) & (reliability: 1472.0) &  (original description: no original description)","protein_coding"
"LOC_Os01g49180","No alias","Oryza sativa","ATP dependent DNA ligase family protein, putative, expressed","protein_coding"
"LOC_Os10g34750","No alias","Oryza sativa","LIG1 - Putative DNA ligase I, expressed","protein_coding"
"Mp1g15320.1","No alias","Marchantia polymorpha","DNA replication DNA ligase (LIG1). DNA ligase (LIG1)","protein_coding"
"Mp1g17990.1","No alias","Marchantia polymorpha","DNA ligase component LIG4 of LIG4-XRCC4 ligase complex","protein_coding"
"Mp2g23970.1","No alias","Marchantia polymorpha","DNA ligase (LIG6)","protein_coding"
"Potri.004G094200","No alias","Populus trichocarpa","DNA LIGASE 6","protein_coding"
"Potri.009G005900","No alias","Populus trichocarpa","DNA ligase 1","protein_coding"
"Potri.018G141900","No alias","Populus trichocarpa","DNA ligase IV","protein_coding"
"Pp1s150_94V6","No alias","Physcomitrella patens","dna ligase iv","protein_coding"
"Pp1s223_54V6","No alias","Physcomitrella patens","T6D22.23; DNA ligase / polydeoxyribonucleotide synthase [ATP] [EC:6.5.1.1] [KO:K01971] [Arabidopsis thaliana]","protein_coding"
"PSME_00009684-RA","No alias","Pseudotsuga menziesii","(q7x7e9|dnl4_orysa : 92.8) Putative DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV) (Polydeoxyribonucleotide synthase [ATP] 4) - Oryza sativa (Rice) & (at5g33406 : 89.7) hAT dimerisation domain-containing protein / transposase-related; FUNCTIONS IN: protein dimerization activity; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 707 Blast hits to 681 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 1; Plants - 680; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). & (reliability: 167.2) &  (original description: no original description)","protein_coding"
"PSME_00016790-RA","No alias","Pseudotsuga menziesii","(at1g66730 : 662.0) Encodes a novel plant specific DNA ligase that is involved in seed germination and DNA repair.; DNA LIGASE 6 (LIG6); FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding; INVOLVED IN: DNA repair, seed germination, DNA recombination, DNA replication; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), DNA ligase, N-terminal (InterPro:IPR012308), DNA repair metallo-beta-lactamase (InterPro:IPR011084), ATP dependent DNA ligase, central (InterPro:IPR012310), ATP dependent DNA ligase, C-terminal (InterPro:IPR012309), ATP-dependent DNA ligase (InterPro:IPR000977), ATP-dependent DNA ligase, conserved site (InterPro:IPR016059); BEST Arabidopsis thaliana protein match is: DNA ligase 1 (TAIR:AT1G08130.1); Has 4468 Blast hits to 4373 proteins in 907 species: Archae - 366; Bacteria - 1648; Metazoa - 644; Fungi - 681; Plants - 268; Viruses - 157; Other Eukaryotes - 704 (source: NCBI BLink). & (reliability: 1324.0) &  (original description: no original description)","protein_coding"
"Seita.5G274300.1","No alias","Setaria italica ","DNA ligase *(LIG6) & EC_6.5 ligase forming phosphoric ester bond","protein_coding"
"Seita.7G229000.1","No alias","Setaria italica ","DNA ligase component *(LIG4) of LIG4-XRCC4 ligase complex & EC_6.5 ligase forming phosphoric ester bond","protein_coding"
"Seita.9G212100.1","No alias","Setaria italica ","DNA ligase *(LIG1) & DNA replication DNA ligase *(LIG1) & EC_6.5 ligase forming phosphoric ester bond","protein_coding"
"Sobic.001G211500.1","No alias","Sorghum bicolor ","DNA ligase *(LIG1) & DNA replication DNA ligase *(LIG1) & EC_6.5 ligase forming phosphoric ester bond","protein_coding"
"Sobic.003G260400.1","No alias","Sorghum bicolor ","DNA ligase *(LIG6) & EC_6.5 ligase forming phosphoric ester bond","protein_coding"
"Sobic.006G207300.1","No alias","Sorghum bicolor ","DNA ligase component *(LIG4) of LIG4-XRCC4 ligase complex & EC_6.5 ligase forming phosphoric ester bond","protein_coding"
"Solyc02g091120","No alias","Solanum lycopersicum","DNA ligase (AHRD V3.3 *** K4BCR1_SOLLC)","protein_coding"
"Solyc07g017990","No alias","Solanum lycopersicum","DNA ligase (AHRD V3.3 *** K4CCL3_SOLLC)","protein_coding"
"Solyc11g066370","No alias","Solanum lycopersicum","DNA ligase (AHRD V3.3 *** K4D9P5_SOLLC)","protein_coding"
"Sopen02g035770","No alias","Solanum pennellii","ATP dependent DNA ligase domain","protein_coding"
"Sopen07g006910","No alias","Solanum pennellii","DNA ligase N terminus","protein_coding"
"Sopen07g006920","No alias","Solanum pennellii","DNA ligase N terminus","protein_coding"
"Sopen11g026120","No alias","Solanum pennellii","ATP dependent DNA ligase domain","protein_coding"