"sequence_id","alias","species","description","type"
"116719","No alias","Selaginella moellendorffii ","CLP protease R subunit 4","protein_coding"
"131372","No alias","Selaginella moellendorffii ","ATP-dependent caseinolytic (Clp) protease/crotonase family protein","protein_coding"
"137715","No alias","Selaginella moellendorffii ","plastid-encoded CLP P","protein_coding"
"148310","No alias","Selaginella moellendorffii ","CLP protease proteolytic subunit 2","protein_coding"
"153292","No alias","Selaginella moellendorffii ","ATP-dependent caseinolytic (Clp) protease/crotonase family protein","protein_coding"
"233821","No alias","Selaginella moellendorffii ","CLP protease P4","protein_coding"
"48156","No alias","Selaginella moellendorffii ","nuclear-encoded CLP protease P7","protein_coding"
"65351","No alias","Selaginella moellendorffii ","CLP protease proteolytic subunit 1","protein_coding"
"67117","No alias","Selaginella moellendorffii ","nuclear encoded CLP protease 5","protein_coding"
"71251","No alias","Selaginella moellendorffii ","CLP protease proteolytic subunit 3","protein_coding"
"90346","No alias","Selaginella moellendorffii ","CLP protease proteolytic subunit 6","protein_coding"
"91162","No alias","Selaginella moellendorffii ","CLP protease proteolytic subunit 2","protein_coding"
"A4A49_05233","No alias","Nicotiana attenuata","atp-dependent clp protease proteolytic subunit 5, chloroplastic","protein_coding"
"A4A49_05452","No alias","Nicotiana attenuata","atp-dependent clp protease proteolytic subunit 3, chloroplastic","protein_coding"
"A4A49_05921","No alias","Nicotiana attenuata","atp-dependent clp protease proteolytic subunit 6, chloroplastic","protein_coding"
"A4A49_11600","No alias","Nicotiana attenuata","atp-dependent clp protease proteolytic subunit 2, mitochondrial","protein_coding"
"A4A49_13239","No alias","Nicotiana attenuata","atp-dependent clp protease proteolytic subunit-related protein 2, chloroplastic","protein_coding"
"A4A49_13628","No alias","Nicotiana attenuata","atp-dependent clp protease proteolytic subunit 4, chloroplastic","protein_coding"
"A4A49_20531","No alias","Nicotiana attenuata","atp-dependent clp protease proteolytic subunit-related protein 2, chloroplastic","protein_coding"
"A4A49_20533","No alias","Nicotiana attenuata","atp-dependent clp protease proteolytic subunit-related protein 2, chloroplastic","protein_coding"
"A4A49_27691","No alias","Nicotiana attenuata","atp-dependent clp protease proteolytic subunit 5, chloroplastic","protein_coding"
"A4A49_33599","No alias","Nicotiana attenuata","atp-dependent clp protease proteolytic subunit-related protein 3, chloroplastic","protein_coding"
"A4A49_36539","No alias","Nicotiana attenuata","atp-dependent clp protease proteolytic subunit-related protein 4, chloroplastic","protein_coding"
"A4A49_57293","No alias","Nicotiana attenuata","atp-dependent clp protease proteolytic subunit 2, mitochondrial","protein_coding"
"A4A49_57412","No alias","Nicotiana attenuata","atp-dependent clp protease proteolytic subunit-related protein 2, chloroplastic","protein_coding"
"At1g02560","No alias","Arabidopsis thaliana","ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178WMF0]","protein_coding"
"At1g09130","No alias","Arabidopsis thaliana","ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4HZE0]","protein_coding"
"At1g11750","No alias","Arabidopsis thaliana","ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:F4IAG5]","protein_coding"
"At1g12410","No alias","Arabidopsis thaliana","ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ36]","protein_coding"
"At1g49970","No alias","Arabidopsis thaliana","ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XJ35]","protein_coding"
"At1g66670","No alias","Arabidopsis thaliana","ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ6]","protein_coding"
"At4g17040","No alias","Arabidopsis thaliana","ATP-dependent Clp protease proteolytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178V785]","protein_coding"
"At5g23140","No alias","Arabidopsis thaliana","ATP-dependent Clp protease proteolytic subunit 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FN42]","protein_coding"
"At5g45390","No alias","Arabidopsis thaliana","ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94B60]","protein_coding"
"Atcg00670","No alias","Arabidopsis thaliana","plastid-encoded CLP P [Source:TAIR;Acc:ATCG00670]","protein_coding"
"Bradi1g05743","No alias","Brachypodium distachyon","plastid-encoded CLP P","protein_coding"
"Bradi1g05750","No alias","Brachypodium distachyon","plastid-encoded CLP P","protein_coding"
"Bradi1g27715","No alias","Brachypodium distachyon","plastid-encoded CLP P","protein_coding"
"Bradi1g51530","No alias","Brachypodium distachyon","CLP protease proteolytic subunit 2","protein_coding"
"Bradi1g60070","No alias","Brachypodium distachyon","CLP protease proteolytic subunit 6","protein_coding"
"Bradi1g62720","No alias","Brachypodium distachyon","ATP-dependent caseinolytic (Clp) protease/crotonase family protein","protein_coding"
"Bradi1g64430","No alias","Brachypodium distachyon","nuclear encoded CLP protease 5","protein_coding"
"Bradi2g10278","No alias","Brachypodium distachyon","CLP protease R subunit 4","protein_coding"
"Bradi2g13680","No alias","Brachypodium distachyon","CLP protease proteolytic subunit 3","protein_coding"
"Bradi2g14460","No alias","Brachypodium distachyon","CLP protease proteolytic subunit 1","protein_coding"
"Bradi3g21620","No alias","Brachypodium distachyon","CLP protease P4","protein_coding"
"Bradi3g49570","No alias","Brachypodium distachyon","nuclear-encoded CLP protease P7","protein_coding"
"Bradi4g15781","No alias","Brachypodium distachyon","CLP protease proteolytic subunit 2","protein_coding"
"Bradi5g16220","No alias","Brachypodium distachyon","nuclear-encoded CLP protease P7","protein_coding"
"Bradi5g23857","No alias","Brachypodium distachyon","plastid-encoded CLP P","protein_coding"
"Brara.A01840.1","No alias","Brassica rapa","non-proteolytic core component *(ClpR) of chloroplast Clp-type protease complex","protein_coding"
"Brara.C04188.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.C04533.1","No alias","Brassica rapa","non-proteolytic core component *(ClpR) of chloroplast Clp-type protease complex","protein_coding"
"Brara.F00856.1","No alias","Brassica rapa","proteolytic component *(ClpP2) of mitochondrion Clp-type protease complex","protein_coding"
"Brara.F03688.1","No alias","Brassica rapa","proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"Brara.G02660.1","No alias","Brassica rapa","proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"Brara.H00268.1","No alias","Brassica rapa","non-proteolytic core component *(ClpR) of chloroplast Clp-type protease complex","protein_coding"
"Brara.H02694.1","No alias","Brassica rapa","proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"Brara.H02844.1","No alias","Brassica rapa","non-proteolytic core component *(ClpR) of chloroplast Clp-type protease complex","protein_coding"
"Brara.H03114.1","No alias","Brassica rapa","proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"Brara.I05116.1","No alias","Brassica rapa","proteolytic component *(ClpP2) of mitochondrion Clp-type protease complex","protein_coding"
"Brara.I05164.1","No alias","Brassica rapa","proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"Brara.J00115.1","No alias","Brassica rapa","proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"Brara.J02442.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Cre03.g204350","No alias","Chlamydomonas reinhardtii","CLP protease R subunit 4","protein_coding"
"Cre06.g299650","No alias","Chlamydomonas reinhardtii","CLP protease proteolytic subunit 6","protein_coding"
"Cre07.g331500","No alias","Chlamydomonas reinhardtii","ATP-dependent caseinolytic (Clp) protease/crotonase family protein","protein_coding"
"Cre12.g486100","No alias","Chlamydomonas reinhardtii","nuclear encoded CLP protease 5","protein_coding"
"Cre12.g500950","No alias","Chlamydomonas reinhardtii","CLP protease P4","protein_coding"
"Cre12.g521450","No alias","Chlamydomonas reinhardtii","nuclear-encoded CLP protease P7","protein_coding"
"Cre14.g619100","No alias","Chlamydomonas reinhardtii","CLP protease proteolytic subunit 1","protein_coding"
"Cre16.g682900","No alias","Chlamydomonas reinhardtii","CLP protease proteolytic subunit 2","protein_coding"
"evm.model.contig_2090.30","No alias","Porphyridium purpureum","(p56317|clpp_chlvu : 257.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (atcg00670 : 207.0) Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome.  Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001).; plastid-encoded CLP P (PCLPP); FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 2 (TAIR:AT1G12410.1). & (reliability: 414.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2508.1","No alias","Porphyridium purpureum","(at4g17040 : 202.0) CLP protease R subunit 4 (CLPR4); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT1G09130.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p56317|clpp_chlvu : 117.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 404.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3551.2","No alias","Porphyridium purpureum","(p56317|clpp_chlvu : 157.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (at1g12410 : 146.0) Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; CLP protease proteolytic subunit 2 (CLP2); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: plastid-encoded CLP P (TAIR:ATCG00670.1); Has 13082 Blast hits to 13064 proteins in 2999 species: Archae - 2; Bacteria - 8275; Metazoa - 145; Fungi - 81; Plants - 1076; Viruses - 67; Other Eukaryotes - 3436 (source: NCBI BLink). & (reliability: 270.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4413.5","No alias","Porphyridium purpureum","(at1g02560 : 190.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; nuclear encoded CLP protease 5 (CLPP5); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 3 (TAIR:AT1G66670.1); Has 13512 Blast hits to 13510 proteins in 3028 species: Archae - 2; Bacteria - 8525; Metazoa - 147; Fungi - 82; Plants - 1082; Viruses - 85; Other Eukaryotes - 3589 (source: NCBI BLink). & (p56317|clpp_chlvu : 170.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 380.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000411.30","No alias","Cyanophora paradoxa","(at1g11750 : 117.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; CLP protease proteolytic subunit 6 (CLPP6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization, photosynthesis; LOCATED IN: chloroplastic endopeptidase Clp complex, chloroplast stroma, chloroplast thylakoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1). & (p56317|clpp_chlvu : 112.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 234.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000842.6","No alias","Cyanophora paradoxa","(p56317|clpp_chlvu : 186.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (atcg00670 : 154.0) Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome.  Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001).; plastid-encoded CLP P (PCLPP); FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 2 (TAIR:AT1G12410.1). & (reliability: 308.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001420.11","No alias","Cyanophora paradoxa","(at1g09130 : 145.0) ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 1 (TAIR:AT1G49970.1). & (p56317|clpp_chlvu : 85.1) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 290.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001420.12","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00001420.2","No alias","Cyanophora paradoxa","(at1g09130 : 182.0) ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 1 (TAIR:AT1G49970.1). & (p56317|clpp_chlvu : 117.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 364.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001420.5","No alias","Cyanophora paradoxa","(at4g17040 : 98.6) CLP protease R subunit 4 (CLPR4); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT1G09130.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 197.2) &  (original description: no original description)","protein_coding"
"evm.model.tig00001420.6","No alias","Cyanophora paradoxa","(at4g17040 : 135.0) CLP protease R subunit 4 (CLPR4); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT1G09130.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p56317|clpp_chlvu : 96.3) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 270.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001420.7","No alias","Cyanophora paradoxa","(at1g09130 : 124.0) ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 1 (TAIR:AT1G49970.1). & (p56317|clpp_chlvu : 80.1) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 248.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001420.9","No alias","Cyanophora paradoxa","(at1g09130 : 146.0) ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 1 (TAIR:AT1G49970.1). & (p56317|clpp_chlvu : 91.3) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 292.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020553.201","No alias","Cyanophora paradoxa","(at5g45390 : 115.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; CLP protease P4 (CLPP4); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: in 7 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 3 (TAIR:AT1G66670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p56317|clpp_chlvu : 92.4) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 230.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020563.155","No alias","Cyanophora paradoxa","(p56317|clpp_chlvu : 251.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (atcg00670 : 210.0) Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome.  Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001).; plastid-encoded CLP P (PCLPP); FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 2 (TAIR:AT1G12410.1). & (reliability: 420.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020780.3","No alias","Cyanophora paradoxa","(at5g23140 : 250.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; nuclear-encoded CLP protease P7 (NCLPP7); FUNCTIONS IN: cobalt ion binding, zinc ion binding; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p56317|clpp_chlvu : 150.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 500.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020952.49","No alias","Cyanophora paradoxa","(at4g17040 : 138.0) CLP protease R subunit 4 (CLPR4); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT1G09130.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p56317|clpp_chlvu : 100.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 276.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021522.2","No alias","Cyanophora paradoxa","(at1g02560 : 201.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; nuclear encoded CLP protease 5 (CLPP5); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 3 (TAIR:AT1G66670.1); Has 13512 Blast hits to 13510 proteins in 3028 species: Archae - 2; Bacteria - 8525; Metazoa - 147; Fungi - 82; Plants - 1082; Viruses - 85; Other Eukaryotes - 3589 (source: NCBI BLink). & (p56317|clpp_chlvu : 150.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 402.0) &  (original description: no original description)","protein_coding"
"Glyma.01G149700","No alias","Glycine max","CLP protease P4","protein_coding"
"Glyma.02G011800","No alias","Glycine max","nuclear encoded CLP protease 5","protein_coding"
"Glyma.02G091200","No alias","Glycine max","CLP protease proteolytic subunit 3","protein_coding"
"Glyma.03G220202","No alias","Glycine max","nuclear encoded CLP protease 5","protein_coding"
"Glyma.03G235800","No alias","Glycine max","ATP-dependent caseinolytic (Clp) protease/crotonase family protein","protein_coding"
"Glyma.05G053600","No alias","Glycine max","CLP protease proteolytic subunit 2","protein_coding"
"Glyma.05G065900","No alias","Glycine max","CLP protease R subunit 4","protein_coding"
"Glyma.09G213800","No alias","Glycine max","CLP protease P4","protein_coding"
"Glyma.10G012300","No alias","Glycine max","nuclear encoded CLP protease 5","protein_coding"
"Glyma.10G257800","No alias","Glycine max","CLP protease proteolytic subunit 1","protein_coding"
"Glyma.11G100300","No alias","Glycine max","nuclear-encoded CLP protease P7","protein_coding"
"Glyma.11G119300","No alias","Glycine max","CLP protease proteolytic subunit 6","protein_coding"
"Glyma.12G026400","No alias","Glycine max","nuclear-encoded CLP protease P7","protein_coding"
"Glyma.12G044500","No alias","Glycine max","CLP protease proteolytic subunit 6","protein_coding"
"Glyma.17G136100","No alias","Glycine max","CLP protease proteolytic subunit 2","protein_coding"
"Glyma.17G147700","No alias","Glycine max","CLP protease R subunit 4","protein_coding"
"Glyma.18G111700","No alias","Glycine max","nuclear encoded CLP protease 5","protein_coding"
"Glyma.18G132600","No alias","Glycine max","plastid-encoded CLP P","protein_coding"
"Glyma.18G291900","No alias","Glycine max","CLP protease proteolytic subunit 3","protein_coding"
"Glyma.19G217100","No alias","Glycine max","nuclear encoded CLP protease 5","protein_coding"
"Glyma.19G233600","No alias","Glycine max","ATP-dependent caseinolytic (Clp) protease/crotonase family protein","protein_coding"
"Glyma.20G048700","No alias","Glycine max","plastid-encoded CLP P","protein_coding"
"Glyma.20G133300","No alias","Glycine max","CLP protease proteolytic subunit 1","protein_coding"
"GRMZM2G001755","No alias","Zea mays","CLP protease proteolytic subunit 3","protein_coding"
"GRMZM2G030072","No alias","Zea mays","ATP-dependent caseinolytic (Clp) protease/crotonase family protein","protein_coding"
"GRMZM2G053236","No alias","Zea mays","nuclear-encoded CLP protease P7","protein_coding"
"GRMZM2G056373","No alias","Zea mays","nuclear encoded CLP protease 5","protein_coding"
"GRMZM2G092632","No alias","Zea mays","CLP protease proteolytic subunit 6","protein_coding"
"GRMZM2G099529","No alias","Zea mays","CLP protease proteolytic subunit 1","protein_coding"
"GRMZM2G111756","No alias","Zea mays","nuclear-encoded CLP protease P7","protein_coding"
"GRMZM2G121456","No alias","Zea mays","nuclear encoded CLP protease 5","protein_coding"
"GRMZM2G145908","No alias","Zea mays","plastid-encoded CLP P","protein_coding"
"GRMZM2G148106","No alias","Zea mays","CLP protease proteolytic subunit 2","protein_coding"
"GRMZM2G320135","No alias","Zea mays","nuclear-encoded CLP protease P7","protein_coding"
"GRMZM2G376930","No alias","Zea mays","plastid-encoded CLP P","protein_coding"
"GRMZM2G377451","No alias","Zea mays","P450 reductase 1","protein_coding"
"GRMZM2G394403","No alias","Zea mays","CLP protease P4","protein_coding"
"GRMZM2G442064","No alias","Zea mays","plastid-encoded CLP P","protein_coding"
"GRMZM2G448161","No alias","Zea mays","plastid-encoded CLP P","protein_coding"
"GRMZM2G474883","No alias","Zea mays","nuclear-encoded CLP protease P7","protein_coding"
"GRMZM5G804708","No alias","Zea mays","plastid-encoded CLP P","protein_coding"
"GRMZM5G819807","No alias","Zea mays","CLP protease R subunit 4","protein_coding"
"HORVU0Hr1G026150.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase) & proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU0Hr1G027550.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase) & proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU0Hr1G029900.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase) & proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU0Hr1G036940.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase) & proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU0Hr1G037900.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase) & proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU1Hr1G041810.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G094480.1","No alias","Hordeum vulgare","non-proteolytic core component *(ClpR) of chloroplast Clp-type protease complex","protein_coding"
"HORVU2Hr1G090470.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G038610.1","No alias","Hordeum vulgare","non-proteolytic core component *(ClpR) of chloroplast Clp-type protease complex","protein_coding"
"HORVU3Hr1G044510.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G044530.1","No alias","Hordeum vulgare","proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU3Hr1G044750.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase)","protein_coding"
"HORVU3Hr1G053800.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G083440.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G038160.1","No alias","Hordeum vulgare","proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU4Hr1G046480.1","No alias","Hordeum vulgare","non-proteolytic core component *(ClpR) of chloroplast Clp-type protease complex","protein_coding"
"HORVU4Hr1G053660.1","No alias","Hordeum vulgare","proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU5Hr1G035690.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G042010.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G065060.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase) & proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU6Hr1G023010.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase) & proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU6Hr1G037220.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase) & proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU6Hr1G049380.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase) & proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"HORVU6Hr1G059510.5","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G073400.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G017670.6","No alias","Hordeum vulgare","proteolytic component *(ClpP2) of mitochondrion Clp-type protease complex","protein_coding"
"HORVU7Hr1G065830.1","No alias","Hordeum vulgare","EC_3.4 hydrolase acting on peptide bond (peptidase) & proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"Kfl00062_0170","kfl00062_0170_v1.1","Klebsormidium nitens","(at1g49970 : 348.0) Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; CLP protease proteolytic subunit 1 (CLPR1); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT1G09130.2); Has 11692 Blast hits to 11690 proteins in 2932 species: Archae - 0; Bacteria - 7285; Metazoa - 144; Fungi - 71; Plants - 1058; Viruses - 0; Other Eukaryotes - 3134 (source: NCBI BLink). & (p56317|clpp_chlvu : 102.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 696.0) &  (original description: no original description)","protein_coding"
"Kfl00070_0100","kfl00070_0100_v1.1","Klebsormidium nitens","(at1g66670 : 263.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp).  The name reflects nomenclature described in Adam et. al (2001).; CLP protease proteolytic subunit 3 (CLPP3); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease P4 (TAIR:AT5G45390.1); Has 13369 Blast hits to 13367 proteins in 2989 species: Archae - 6; Bacteria - 8381; Metazoa - 147; Fungi - 79; Plants - 1070; Viruses - 92; Other Eukaryotes - 3594 (source: NCBI BLink). & (p56317|clpp_chlvu : 163.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 526.0) &  (original description: no original description)","protein_coding"
"Kfl00091_0180","kfl00091_0180_v1.1","Klebsormidium nitens","(at1g02560 : 347.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; nuclear encoded CLP protease 5 (CLPP5); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 3 (TAIR:AT1G66670.1); Has 13512 Blast hits to 13510 proteins in 3028 species: Archae - 2; Bacteria - 8525; Metazoa - 147; Fungi - 82; Plants - 1082; Viruses - 85; Other Eukaryotes - 3589 (source: NCBI BLink). & (p56317|clpp_chlvu : 169.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 694.0) &  (original description: no original description)","protein_coding"
"Kfl00111_0180","kfl00111_0180_v1.1","Klebsormidium nitens","(at1g12410 : 279.0) Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; CLP protease proteolytic subunit 2 (CLP2); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: plastid-encoded CLP P (TAIR:ATCG00670.1); Has 13082 Blast hits to 13064 proteins in 2999 species: Archae - 2; Bacteria - 8275; Metazoa - 145; Fungi - 81; Plants - 1076; Viruses - 67; Other Eukaryotes - 3436 (source: NCBI BLink). & (p56317|clpp_chlvu : 197.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 558.0) &  (original description: no original description)","protein_coding"
"Kfl00233_0050","kfl00233_0050_v1.1","Klebsormidium nitens","(at1g11750 : 244.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; CLP protease proteolytic subunit 6 (CLPP6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization, photosynthesis; LOCATED IN: chloroplastic endopeptidase Clp complex, chloroplast stroma, chloroplast thylakoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1). & (p56317|clpp_chlvu : 124.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 488.0) &  (original description: no original description)","protein_coding"
"Kfl00343_0150","kfl00343_0150_v1.1","Klebsormidium nitens","(at1g09130 : 251.0) ATP-dependent caseinolytic (Clp) protease/crotonase family protein; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 1 (TAIR:AT1G49970.1). & (p56317|clpp_chlvu : 105.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 502.0) &  (original description: no original description)","protein_coding"
"Kfl00451_0040","kfl00451_0040_v1.1","Klebsormidium nitens","(at4g17040 : 304.0) CLP protease R subunit 4 (CLPR4); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT1G09130.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p56317|clpp_chlvu : 116.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 608.0) &  (original description: no original description)","protein_coding"
"Kfl00493_0090","kfl00493_0090_v1.1","Klebsormidium nitens","(at5g23140 : 238.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; nuclear-encoded CLP protease P7 (NCLPP7); FUNCTIONS IN: cobalt ion binding, zinc ion binding; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p56317|clpp_chlvu : 148.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 476.0) &  (original description: no original description)","protein_coding"
"Kfl00987_0030","kfl00987_0030_v1.1","Klebsormidium nitens","(at5g45390 : 268.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; CLP protease P4 (CLPP4); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization, regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: in 7 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 3 (TAIR:AT1G66670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p56317|clpp_chlvu : 149.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 536.0) &  (original description: no original description)","protein_coding"
"Kfl01813_0510","kfl01813_0510_v1.1","Klebsormidium nitens","(q85fj8|clpp_adica : 288.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Adiantum capillus-veneris (Maidenhair fern) & (atcg00670 : 251.0) Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome.  Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001).; plastid-encoded CLP P (PCLPP); FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 2 (TAIR:AT1G12410.1). & (reliability: 502.0) &  (original description: no original description)","protein_coding"
"LOC_Os01g16530","No alias","Oryza sativa","OsClp1 - Putative Clp protease homologue, expressed","protein_coding"
"LOC_Os01g32350","No alias","Oryza sativa","OsClp2 - Putative Clp protease homologue, expressed","protein_coding"
"LOC_Os02g42290","No alias","Oryza sativa","OsClp3 - Putative Clp protease homologue, expressed","protein_coding"
"LOC_Os03g19510","No alias","Oryza sativa","OsClp4 - Putative Clp protease homologue, expressed","protein_coding"
"LOC_Os03g22430","No alias","Oryza sativa","OsClp5 - Putative Clp protease homologue, expressed","protein_coding"
"LOC_Os03g29810","No alias","Oryza sativa","OsClp6 - Putative Clp protease homologue, expressed","protein_coding"
"LOC_Os04g44400","No alias","Oryza sativa","OsClp7 - Putative Clp protease homologue, expressed","protein_coding"
"LOC_Os05g51450","No alias","Oryza sativa","OsClp8 - Putative Clp protease homologue, expressed","protein_coding"
"LOC_Os06g04530","No alias","Oryza sativa","OsClp9 - Putative Clp protease homologue, expressed","protein_coding"
"LOC_Os06g39712","No alias","Oryza sativa","OsClp10 - Putative Clp protease homologue, expressed","protein_coding"
"LOC_Os08g15270","No alias","Oryza sativa","ATP-dependent Clp protease proteolytic subunit, putative, expressed","protein_coding"
"LOC_Os10g21300","No alias","Oryza sativa","ATP-dependent Clp protease proteolytic subunit, putative, expressed","protein_coding"
"LOC_Os10g43050","No alias","Oryza sativa","OsClp11 - Putative Clp protease homologue, expressed","protein_coding"
"LOC_Os12g10590","No alias","Oryza sativa","OsClp13 - Putative Clp protease homologue, expressed","protein_coding"
"MA_10429819g0020","No alias","Picea abies","(at1g49970 : 364.0) Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; CLP protease proteolytic subunit 1 (CLPR1); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT1G09130.2); Has 11692 Blast hits to 11690 proteins in 2932 species: Archae - 0; Bacteria - 7285; Metazoa - 144; Fungi - 71; Plants - 1058; Viruses - 0; Other Eukaryotes - 3134 (source: NCBI BLink). & (q9muv8|clpp_mesvi : 85.9) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Mesostigma viride & (reliability: 728.0) &  (original description: no original description)","protein_coding"
"MA_207420g0010","No alias","Picea abies","(at5g23140 : 271.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; nuclear-encoded CLP protease P7 (NCLPP7); FUNCTIONS IN: cobalt ion binding, zinc ion binding; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p56317|clpp_chlvu : 158.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 542.0) &  (original description: no original description)","protein_coding"
"MA_55906g0010","No alias","Picea abies","(at1g11750 : 234.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; CLP protease proteolytic subunit 6 (CLPP6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization, photosynthesis; LOCATED IN: chloroplastic endopeptidase Clp complex, chloroplast stroma, chloroplast thylakoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1). & (p56317|clpp_chlvu : 99.8) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 468.0) &  (original description: no original description)","protein_coding"
"MA_69027g0010","No alias","Picea abies","(at5g23140 : 287.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; nuclear-encoded CLP protease P7 (NCLPP7); FUNCTIONS IN: cobalt ion binding, zinc ion binding; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p56317|clpp_chlvu : 154.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 574.0) &  (original description: no original description)","protein_coding"
"MA_8898851g0010","No alias","Picea abies","(at1g49970 : 182.0) Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; CLP protease proteolytic subunit 1 (CLPR1); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT1G09130.2); Has 11692 Blast hits to 11690 proteins in 2932 species: Archae - 0; Bacteria - 7285; Metazoa - 144; Fungi - 71; Plants - 1058; Viruses - 0; Other Eukaryotes - 3134 (source: NCBI BLink). & (reliability: 364.0) &  (original description: no original description)","protein_coding"
"Mp1g12460.1","No alias","Marchantia polymorpha","proteolytic core component ClpP1/3-6 of chloroplast Clp-type protease complex","protein_coding"
"Mp2g19280.1","No alias","Marchantia polymorpha","proteolytic core component ClpP1/3-6 of chloroplast Clp-type protease complex","protein_coding"
"Mp3g07790.1","No alias","Marchantia polymorpha","proteolytic core component ClpP1/3-6 of chloroplast Clp-type protease complex","protein_coding"
"Mp4g17530.1","No alias","Marchantia polymorpha","proteolytic core component ClpP1/3-6 of chloroplast Clp-type protease complex","protein_coding"
"Mp5g24510.1","No alias","Marchantia polymorpha","ATP-dependent Clp protease proteolytic subunit 2, mitochondrial OS=Arabidopsis thaliana (sp|q9fn42|clpp2_arath : 288.0)","protein_coding"
"Mp6g21300.1","No alias","Marchantia polymorpha","non-proteolytic core component ClpR of chloroplast Clp-type protease complex","protein_coding"
"Mp7g03170.1","No alias","Marchantia polymorpha","non-proteolytic core component ClpR of chloroplast Clp-type protease complex","protein_coding"
"Mp7g18600.1","No alias","Marchantia polymorpha","non-proteolytic core component ClpR of chloroplast Clp-type protease complex","protein_coding"
"Mp8g18340.1","No alias","Marchantia polymorpha","proteolytic component ClpP2 of mitochondrion Clp-type protease complex","protein_coding"
"Mpzg01030.3","No alias","Marchantia polymorpha","proteolytic core component ClpP1/3-6 of chloroplast Clp-type protease complex","protein_coding"
"Potri.001G115900","No alias","Populus trichocarpa","CLP protease proteolytic subunit 2","protein_coding"
"Potri.001G130601","No alias","Populus trichocarpa","CLP protease P4","protein_coding"
"Potri.001G295266","No alias","Populus trichocarpa","CLP protease proteolytic subunit 1","protein_coding"
"Potri.002G178800","No alias","Populus trichocarpa","plastid-encoded CLP P","protein_coding"
"Potri.002G195200","No alias","Populus trichocarpa","nuclear encoded CLP protease 5","protein_coding"
"Potri.003G083300","No alias","Populus trichocarpa","CLP protease R subunit 4","protein_coding"
"Potri.003G103300","No alias","Populus trichocarpa","CLP protease P4","protein_coding"
"Potri.004G092100","No alias","Populus trichocarpa","CLP protease proteolytic subunit 3","protein_coding"
"Potri.004G152900","No alias","Populus trichocarpa","CLP protease proteolytic subunit 6","protein_coding"
"Potri.005G025600","No alias","Populus trichocarpa","ATP-dependent caseinolytic (Clp) protease/crotonase family protein","protein_coding"
"Potri.005G092600","No alias","Populus trichocarpa","nuclear-encoded CLP protease P7","protein_coding"
"Potri.007G071700","No alias","Populus trichocarpa","nuclear-encoded CLP protease P7","protein_coding"
"Potri.009G089300","No alias","Populus trichocarpa","CLP protease proteolytic subunit 1","protein_coding"
"Potri.009G114001","No alias","Populus trichocarpa","CLP protease proteolytic subunit 6","protein_coding"
"Potri.013G017166","No alias","Populus trichocarpa","ATP-dependent caseinolytic (Clp) protease/crotonase family protein","protein_coding"
"Potri.014G119700","No alias","Populus trichocarpa","nuclear encoded CLP protease 5","protein_coding"
"Potri.017G140600","No alias","Populus trichocarpa","plastid-encoded CLP P","protein_coding"
"Pp1s102_15V6","No alias","Physcomitrella patens","atp-dependent clp protease proteolytic subunit","protein_coding"
"Pp1s115_5V6","No alias","Physcomitrella patens","atp-dependent clp protease proteolytic subunit","protein_coding"
"Pp1s128_154V6","No alias","Physcomitrella patens","atp-dependent clp protease proteolytic subunit","protein_coding"
"Pp1s129_203V6","No alias","Physcomitrella patens","atp-dependent clp proteolytic subunit","protein_coding"
"Pp1s161_14V6","No alias","Physcomitrella patens","atp-dependent clp protease proteolytic subunit","protein_coding"
"Pp1s16_270V6","No alias","Physcomitrella patens","atp-dependent clp protease proteolytic","protein_coding"
"Pp1s173_102V6","No alias","Physcomitrella patens","endopeptidase clp chloroplast precursor","protein_coding"
"Pp1s212_7V6","No alias","Physcomitrella patens","atp-dependent clpproteolytic subunit","protein_coding"
"Pp1s217_29V6","No alias","Physcomitrella patens","atp-dependent clp protease proteolytic subunit","protein_coding"
"Pp1s229_35V6","No alias","Physcomitrella patens","atp-dependent clp proteolytic subunit","protein_coding"
"Pp1s22_308V6","No alias","Physcomitrella patens","atp-dependent clp protease proteolytic subunit","protein_coding"
"Pp1s340_20V6","No alias","Physcomitrella patens","atp-dependent clp protease proteolytic subunit","protein_coding"
"Pp1s36_137V6","No alias","Physcomitrella patens","endopeptidase clp chloroplast precursor","protein_coding"
"Pp1s37_54V6","No alias","Physcomitrella patens","endopeptidase clp","protein_coding"
"Pp1s390_3V6","No alias","Physcomitrella patens","endopeptidase clp chloroplast precursor","protein_coding"
"Pp1s49_191V6","No alias","Physcomitrella patens","atp-dependent clpproteolytic subunit","protein_coding"
"Pp1s4_13V6","No alias","Physcomitrella patens","endopeptidase clp chloroplast precursor","protein_coding"
"Pp1s74_255V6","No alias","Physcomitrella patens","endopeptidase clp","protein_coding"
"Pp1s81_62V6","No alias","Physcomitrella patens","atp-dependent clp protease proteolytic subunit","protein_coding"
"PSME_00001460-RA","No alias","Pseudotsuga menziesii","(at1g66670 : 236.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp).  The name reflects nomenclature described in Adam et. al (2001).; CLP protease proteolytic subunit 3 (CLPP3); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease P4 (TAIR:AT5G45390.1); Has 13369 Blast hits to 13367 proteins in 2989 species: Archae - 6; Bacteria - 8381; Metazoa - 147; Fungi - 79; Plants - 1070; Viruses - 92; Other Eukaryotes - 3594 (source: NCBI BLink). & (p56317|clpp_chlvu : 113.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 472.0) &  (original description: no original description)","protein_coding"
"PSME_00001980-RA","No alias","Pseudotsuga menziesii","(at1g49970 : 256.0) Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; CLP protease proteolytic subunit 1 (CLPR1); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma, chloroplast thylakoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT1G09130.2); Has 11692 Blast hits to 11690 proteins in 2932 species: Archae - 0; Bacteria - 7285; Metazoa - 144; Fungi - 71; Plants - 1058; Viruses - 0; Other Eukaryotes - 3134 (source: NCBI BLink). & (reliability: 512.0) &  (original description: no original description)","protein_coding"
"PSME_00007966-RA","No alias","Pseudotsuga menziesii","(q85x43|clpp_pinko : 231.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Pinus koraiensis (Korean pine) & (atcg00670 : 163.0) Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome.  Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001).; plastid-encoded CLP P (PCLPP); FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 2 (TAIR:AT1G12410.1). & (reliability: 326.0) &  (original description: no original description)","protein_coding"
"PSME_00008342-RA","No alias","Pseudotsuga menziesii","(at4g32500 : 129.0) Encodes AKT5, a member of the Shaker family potassium ion (K+) channel.  This family includes five groups based on phylogenetic analysis (FEBS Letters (2007) 581: 2357): I (inward rectifying channel): AKT1 (AT2G26650), AKT5 (AT4G32500) and SPIK (also known as AKT6, AT2G25600); II (inward rectifying channel): KAT1 (AT5G46240) and KAT2 (AT4G18290); III (weakly inward rectifying channel): AKT2 (AT4G22200); IV (regulatory subunit involved in inwardly rectifying conductance formation): KAT3 (also known as AtKC1, AT4G32650); V (outward rectifying channel): SKOR (AT3G02850) and GORK (AT5G37500).; K+ transporter 5 (KT5); FUNCTIONS IN: inward rectifier potassium channel activity, cyclic nucleotide binding; INVOLVED IN: potassium ion transport, N-terminal protein myristoylation, ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), Protein of unknown function DUF3354 (InterPro:IPR021789), Ankyrin repeat-containing domain (InterPro:IPR020683), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Shaker pollen inward K+ channel (TAIR:AT2G25600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q8vyx2|akt1_orysa : 119.0) Potassium channel AKT1 (OsAKT1) - Oryza sativa (Rice) & (reliability: 258.0) &  (original description: no original description)","protein_coding"
"PSME_00008499-RA","No alias","Pseudotsuga menziesii","(q85x43|clpp_pinko : 331.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Pinus koraiensis (Korean pine) & (atcg00670 : 225.0) Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome.  Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001).; plastid-encoded CLP P (PCLPP); FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 2 (TAIR:AT1G12410.1). & (reliability: 450.0) &  (original description: no original description)","protein_coding"
"PSME_00011672-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00013978-RA","No alias","Pseudotsuga menziesii","(at1g66670 : 97.8) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp).  The name reflects nomenclature described in Adam et. al (2001).; CLP protease proteolytic subunit 3 (CLPP3); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease P4 (TAIR:AT5G45390.1); Has 13369 Blast hits to 13367 proteins in 2989 species: Archae - 6; Bacteria - 8381; Metazoa - 147; Fungi - 79; Plants - 1070; Viruses - 92; Other Eukaryotes - 3594 (source: NCBI BLink). & (reliability: 195.6) &  (original description: no original description)","protein_coding"
"PSME_00014623-RA","No alias","Pseudotsuga menziesii","(at4g17040 : 91.3) CLP protease R subunit 4 (CLPR4); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: ATP-dependent caseinolytic (Clp) protease/crotonase family protein (TAIR:AT1G09130.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 182.6) &  (original description: no original description)","protein_coding"
"PSME_00016471-RA","No alias","Pseudotsuga menziesii","(at4g15080 : 93.2) DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT3G22180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 181.8) &  (original description: no original description)","protein_coding"
"PSME_00018691-RA","No alias","Pseudotsuga menziesii","(at5g23140 : 283.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; nuclear-encoded CLP protease P7 (NCLPP7); FUNCTIONS IN: cobalt ion binding, zinc ion binding; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p56317|clpp_chlvu : 160.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 566.0) &  (original description: no original description)","protein_coding"
"PSME_00021804-RA","No alias","Pseudotsuga menziesii","(at4g33300 : 213.0) ADR1-like 1 (ADR1-L1); FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Powdery mildew resistance protein,  RPW8 domain (InterPro:IPR008808), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: ADR1-like 2 (TAIR:AT5G04720.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 426.0) &  (original description: no original description)","protein_coding"
"PSME_00022661-RA","No alias","Pseudotsuga menziesii","(at1g11750 : 235.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; CLP protease proteolytic subunit 6 (CLPP6); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization, photosynthesis; LOCATED IN: chloroplastic endopeptidase Clp complex, chloroplast stroma, chloroplast thylakoid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1). & (p56317|clpp_chlvu : 99.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 470.0) &  (original description: no original description)","protein_coding"
"PSME_00027296-RA","No alias","Pseudotsuga menziesii","(at1g02560 : 249.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; nuclear encoded CLP protease 5 (CLPP5); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 3 (TAIR:AT1G66670.1); Has 13512 Blast hits to 13510 proteins in 3028 species: Archae - 2; Bacteria - 8525; Metazoa - 147; Fungi - 82; Plants - 1082; Viruses - 85; Other Eukaryotes - 3589 (source: NCBI BLink). & (p56317|clpp_chlvu : 146.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 498.0) &  (original description: no original description)","protein_coding"
"PSME_00027953-RA","No alias","Pseudotsuga menziesii","(at1g12410 : 236.0) Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; CLP protease proteolytic subunit 2 (CLP2); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: plastid-encoded CLP P (TAIR:ATCG00670.1); Has 13082 Blast hits to 13064 proteins in 2999 species: Archae - 2; Bacteria - 8275; Metazoa - 145; Fungi - 81; Plants - 1076; Viruses - 67; Other Eukaryotes - 3436 (source: NCBI BLink). & (p56317|clpp_chlvu : 139.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 472.0) &  (original description: no original description)","protein_coding"
"PSME_00028684-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00031647-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00033818-RA","No alias","Pseudotsuga menziesii","(at4g12420 : 580.0) Encodes a protein of unknown function involved in directed root tip growth. It is a member of 19-member gene family and is distantly related structurally to the multiple-copper oxidases ascorbate oxidase and laccase, though it lacks the copper-binding domains. The protein is glycosylated and GPI-anchored. It is localized to the plasma membrane and the cell wall. The gene is expressed most strongly in expanding tissues.; SKU5; FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: cell tip growth; LOCATED IN: plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5  similar 2 (TAIR:AT5G51480.1). & (q00624|aso_brana : 343.0) L-ascorbate oxidase homolog precursor (EC 1.10.3.3) (Ascorbase) - Brassica napus (Rape) & (reliability: 1086.0) &  (original description: no original description)","protein_coding"
"PSME_00041852-RA","No alias","Pseudotsuga menziesii","(at5g23140 : 315.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).; nuclear-encoded CLP protease P7 (NCLPP7); FUNCTIONS IN: cobalt ion binding, zinc ion binding; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: nuclear encoded CLP protease 5 (TAIR:AT1G02560.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p56317|clpp_chlvu : 172.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Chlorella vulgaris (Green alga) & (reliability: 630.0) &  (original description: no original description)","protein_coding"
"PSME_00043653-RA","No alias","Pseudotsuga menziesii","(p41609|clpp_pinth : 233.0) ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) - Pinus thunbergii (Green pine) (Japanese black pine) & (atcg00670 : 144.0) Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome.  Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001).; plastid-encoded CLP P (PCLPP); FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane, chloroplastic endopeptidase Clp complex, plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease proteolytic subunit 2 (TAIR:AT1G12410.1). & (reliability: 288.0) &  (original description: no original description)","protein_coding"
"PSME_00047314-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00049511-RA","No alias","Pseudotsuga menziesii","(at1g66670 : 101.0) One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp).  The name reflects nomenclature described in Adam et. al (2001).; CLP protease proteolytic subunit 3 (CLPP3); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP, active site (InterPro:IPR018215), Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: CLP protease P4 (TAIR:AT5G45390.1); Has 13369 Blast hits to 13367 proteins in 2989 species: Archae - 6; Bacteria - 8381; Metazoa - 147; Fungi - 79; Plants - 1070; Viruses - 92; Other Eukaryotes - 3594 (source: NCBI BLink). & (reliability: 202.0) &  (original description: no original description)","protein_coding"
"Seita.1G245300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G297600.1","No alias","Setaria italica ","proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"Seita.3G122600.1","No alias","Setaria italica ","non-proteolytic core component *(ClpR) of chloroplast Clp-type protease complex","protein_coding"
"Seita.4G026100.1","No alias","Setaria italica ","proteolytic component *(ClpP2) of mitochondrion Clp-type protease complex","protein_coding"
"Seita.5G044900.1","No alias","Setaria italica ","non-proteolytic core component *(ClpR) of chloroplast Clp-type protease complex","protein_coding"
"Seita.5G177800.1","No alias","Setaria italica ","proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"Seita.7G173600.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G305000.1","No alias","Setaria italica ","proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"Seita.9G389300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G407400.1","No alias","Setaria italica ","non-proteolytic core component *(ClpR) of chloroplast Clp-type protease complex","protein_coding"
"Seita.9G428800.1","No alias","Setaria italica ","proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"Seita.J013900.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Sobic.001G281500.1","No alias","Sorghum bicolor ","proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"Sobic.001G375000.2","No alias","Sorghum bicolor ","non-proteolytic core component *(ClpR) of chloroplast Clp-type protease complex","protein_coding"
"Sobic.001G395300.1","No alias","Sorghum bicolor ","proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"Sobic.003G128400.1","No alias","Sorghum bicolor ","non-proteolytic core component *(ClpR) of chloroplast Clp-type protease complex","protein_coding"
"Sobic.003G170200.1","No alias","Sorghum bicolor ","proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"Sobic.004G224500.2","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.004G336200.1","No alias","Sorghum bicolor ","proteolytic core component *(ClpP1/3-6) of chloroplast Clp-type protease complex","protein_coding"
"Sobic.006G153200.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.009G255300.1","No alias","Sorghum bicolor ","non-proteolytic core component *(ClpR) of chloroplast Clp-type protease complex","protein_coding"
"Sobic.010G027200.1","No alias","Sorghum bicolor ","proteolytic component *(ClpP2) of mitochondrion Clp-type protease complex","protein_coding"
"Solyc01g099690","No alias","Solanum lycopersicum","ATP-dependent Clp protease proteolytic subunit (AHRD V3.3 *** K4B103_SOLLC)","protein_coding"
"Solyc01g100520","No alias","Solanum lycopersicum","Clp protease 2 proteolytic subunit","protein_coding"
"Solyc02g091280","No alias","Solanum lycopersicum","ATP-dependent Clp protease proteolytic subunit (AHRD V3.3 *** K4BCS6_SOLLC)","protein_coding"
"Solyc04g009310","No alias","Solanum lycopersicum","ATP-dependent Clp protease proteolytic subunit (AHRD V3.3 *** K4BP87_SOLLC)","protein_coding"
"Solyc08g075750","No alias","Solanum lycopersicum","ATP-dependent Clp protease proteolytic subunit (AHRD V3.3 *** K4CMU2_SOLLC)","protein_coding"
"Solyc08g077890","No alias","Solanum lycopersicum","ATP-dependent Clp protease proteolytic subunit (AHRD V3.3 *** K4CNE8_SOLLC)","protein_coding"
"Solyc08g079620","No alias","Solanum lycopersicum","ATP-dependent Clp protease proteolytic subunit (AHRD V3.3 *** K4CNW2_SOLLC)","protein_coding"
"Solyc09g065790","No alias","Solanum lycopersicum","ATP-dependent Clp protease proteolytic subunit (AHRD V3.3 *** K4CUK5_SOLLC)","protein_coding"
"Solyc10g049710","No alias","Solanum lycopersicum","ATP-dependent Clp protease proteolytic subunit (AHRD V3.3 *** K4D0C8_SOLLC)","protein_coding"
"Solyc10g051310","No alias","Solanum lycopersicum","clp-like energy-dependent protease","protein_coding"
"Sopen01g043210","No alias","Solanum pennellii","Clp protease","protein_coding"
"Sopen01g044030","No alias","Solanum pennellii","Clp protease","protein_coding"
"Sopen02g035900","No alias","Solanum pennellii","Clp protease","protein_coding"
"Sopen04g004430","No alias","Solanum pennellii","Clp protease","protein_coding"
"Sopen08g024400","No alias","Solanum pennellii","Clp protease","protein_coding"
"Sopen08g026400","No alias","Solanum pennellii","Clp protease","protein_coding"
"Sopen08g027970","No alias","Solanum pennellii","Clp protease","protein_coding"
"Sopen09g009510","No alias","Solanum pennellii","Clp protease","protein_coding"
"Sopen10g008570","No alias","Solanum pennellii","Ribulose bisphosphate carboxylase large chain, catalytic domain","protein_coding"
"Sopen10g020800","No alias","Solanum pennellii","Clp protease","protein_coding"
"Sopen10g022990","No alias","Solanum pennellii","Clp protease","protein_coding"