"sequence_id","alias","species","description","type"
"102612","No alias","Selaginella moellendorffii ","chromatin remodeling 5","protein_coding"
"102849","No alias","Selaginella moellendorffii ","Homeotic gene regulator","protein_coding"
"109740","No alias","Selaginella moellendorffii ","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"110395","No alias","Selaginella moellendorffii ","chromatin remodeling 1","protein_coding"
"110695","No alias","Selaginella moellendorffii ","DNA/RNA helicase protein","protein_coding"
"123971","No alias","Selaginella moellendorffii ","Helicase protein with RING/U-box domain","protein_coding"
"130534","No alias","Selaginella moellendorffii ","chromatin remodeling 4","protein_coding"
"139206","No alias","Selaginella moellendorffii ","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"143427","No alias","Selaginella moellendorffii ","SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein","protein_coding"
"155996","No alias","Selaginella moellendorffii ","chromatin remodeling factor CHD3 (PICKLE)","protein_coding"
"164481","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"177985","No alias","Selaginella moellendorffii ","chromatin remodeling factor CHD3 (PICKLE)","protein_coding"
"186944","No alias","Selaginella moellendorffii ","DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases","protein_coding"
"235696","No alias","Selaginella moellendorffii ","chromatin remodeling 8","protein_coding"
"37666","No alias","Selaginella moellendorffii ","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"407530","No alias","Selaginella moellendorffii ","homolog of RAD54","protein_coding"
"408","No alias","Selaginella moellendorffii ","DNA/RNA helicase protein","protein_coding"
"412612","No alias","Selaginella moellendorffii ","homolog of RAD54","protein_coding"
"414152","No alias","Selaginella moellendorffii ","DNA/RNA helicase protein","protein_coding"
"421707","No alias","Selaginella moellendorffii ","homolog of RAD54","protein_coding"
"426581","No alias","Selaginella moellendorffii ","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"429540","No alias","Selaginella moellendorffii ","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"429547","No alias","Selaginella moellendorffii ","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"429595","No alias","Selaginella moellendorffii ","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"431801","No alias","Selaginella moellendorffii ","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"438275","No alias","Selaginella moellendorffii ","zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding","protein_coding"
"440203","No alias","Selaginella moellendorffii ","chromatin-remodeling protein 11","protein_coding"
"440815","No alias","Selaginella moellendorffii ","chromatin remodeling 5","protein_coding"
"441095","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"441121","No alias","Selaginella moellendorffii ","chromatin remodeling 42","protein_coding"
"444050","No alias","Selaginella moellendorffii ","INO80 ortholog","protein_coding"
"50459","No alias","Selaginella moellendorffii ","chromatin remodeling 24","protein_coding"
"50956","No alias","Selaginella moellendorffii ","switch 2","protein_coding"
"60241","No alias","Selaginella moellendorffii ","transcription regulatory protein SNF2, putative","protein_coding"
"76516","No alias","Selaginella moellendorffii ","chromatin remodeling factor18","protein_coding"
"80139","No alias","Selaginella moellendorffii ","SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein","protein_coding"
"84719","No alias","Selaginella moellendorffii ","chromatin remodeling 31","protein_coding"
"84809","No alias","Selaginella moellendorffii ","chromatin-remodeling protein 11","protein_coding"
"A4A49_00817","No alias","Nicotiana attenuata","chd3-type chromatin-remodeling factor pickle","protein_coding"
"A4A49_01233","No alias","Nicotiana attenuata","helicase-like transcription factor chr28","protein_coding"
"A4A49_01913","No alias","Nicotiana attenuata","putative helicase chr10","protein_coding"
"A4A49_02348","No alias","Nicotiana attenuata","helicase-like transcription factor chr28","protein_coding"
"A4A49_03178","No alias","Nicotiana attenuata","protein chromatin remodeling 20","protein_coding"
"A4A49_03180","No alias","Nicotiana attenuata","protein chromatin remodeling 20","protein_coding"
"A4A49_03849","No alias","Nicotiana attenuata","protein chromatin remodeling 4","protein_coding"
"A4A49_04038","No alias","Nicotiana attenuata","SMARCA3-like protein 2","protein_coding"
"A4A49_05437","No alias","Nicotiana attenuata","chd3-type chromatin-remodeling factor pickle","protein_coding"
"A4A49_07569","No alias","Nicotiana attenuata","dna helicase ino80","protein_coding"
"A4A49_08521","No alias","Nicotiana attenuata","protein chromatin remodeling 25","protein_coding"
"A4A49_08973","No alias","Nicotiana attenuata","helicase-like transcription factor chr28","protein_coding"
"A4A49_09307","No alias","Nicotiana attenuata","SMARCA3-like protein 3","protein_coding"
"A4A49_11596","No alias","Nicotiana attenuata","protein chromatin remodeling 19","protein_coding"
"A4A49_11740","No alias","Nicotiana attenuata","protein chromatin remodeling 24","protein_coding"
"A4A49_15714","No alias","Nicotiana attenuata","atp-dependent dna helicase ddm1","protein_coding"
"A4A49_16179","No alias","Nicotiana attenuata","protein photoperiod-independent early flowering 1","protein_coding"
"A4A49_16182","No alias","Nicotiana attenuata","helicase protein mom1","protein_coding"
"A4A49_17515","No alias","Nicotiana attenuata","SMARCA3-like protein 3","protein_coding"
"A4A49_17680","No alias","Nicotiana attenuata","SMARCA3-like 1","protein_coding"
"A4A49_17779","No alias","Nicotiana attenuata","atp-dependent helicase brm","protein_coding"
"A4A49_20219","No alias","Nicotiana attenuata","helicase-like transcription factor chr28","protein_coding"
"A4A49_20221","No alias","Nicotiana attenuata","helicase-like transcription factor chr28","protein_coding"
"A4A49_22090","No alias","Nicotiana attenuata","protein chromatin remodeling 8","protein_coding"
"A4A49_25183","No alias","Nicotiana attenuata","snf2 domain-containing protein classy 3","protein_coding"
"A4A49_25658","No alias","Nicotiana attenuata","protein chromatin remodeling 35","protein_coding"
"A4A49_27543","No alias","Nicotiana attenuata","putative atp-dependent dna helicase chr12","protein_coding"
"A4A49_28780","No alias","Nicotiana attenuata","switch 2","protein_coding"
"A4A49_30694","No alias","Nicotiana attenuata","protein chromatin remodeling 5","protein_coding"
"A4A49_34289","No alias","Nicotiana attenuata","iswi chromatin-remodeling complex atpase chr11","protein_coding"
"A4A49_35509","No alias","Nicotiana attenuata","snf2 domain-containing protein classy 1","protein_coding"
"A4A49_36630","No alias","Nicotiana attenuata","f-box protein","protein_coding"
"A4A49_36845","No alias","Nicotiana attenuata","dna helicase ino80","protein_coding"
"A4A49_37323","No alias","Nicotiana attenuata","putative chromatin-remodeling complex atpase chain","protein_coding"
"A4A49_39338","No alias","Nicotiana attenuata","tata-binding protein-associated factor btaf1","protein_coding"
"A4A49_39827","No alias","Nicotiana attenuata","dna helicase ino80","protein_coding"
"A4A49_40832","No alias","Nicotiana attenuata","atp-dependent dna helicase ddm1","protein_coding"
"A4A49_50225","No alias","Nicotiana attenuata","chromatin structure-remodeling complex protein syd","protein_coding"
"A4A49_56777","No alias","Nicotiana attenuata","chd3-type chromatin-remodeling factor pickle","protein_coding"
"A4A49_57939","No alias","Nicotiana attenuata","iswi chromatin-remodeling complex atpase chr11","protein_coding"
"AC152495.1_FG006","No alias","Zea mays","DNA/RNA helicase protein","protein_coding"
"AC215249.3_FG007","No alias","Zea mays","Helicase protein with RING/U-box domain","protein_coding"
"AC235535.1_FG001","No alias","Zea mays","chromatin-remodeling protein 11","protein_coding"
"At1g02670","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT1G02670]","protein_coding"
"At1g03750","No alias","Arabidopsis thaliana","Switch 2 [Source:UniProtKB/Swiss-Prot;Acc:F4I2H2]","protein_coding"
"At1g05120","No alias","Arabidopsis thaliana","Helicase protein with RING/U-box domain [Source:TAIR;Acc:AT1G05120]","protein_coding"
"At1g05490","No alias","Arabidopsis thaliana","SNF2 domain-containing protein CLASSY 3 [Source:UniProtKB/Swiss-Prot;Acc:F4I8S3]","protein_coding"
"At1g08600","No alias","Arabidopsis thaliana","CHR20 [Source:UniProtKB/TrEMBL;Acc:A0A178VZQ9]","protein_coding"
"At1g11100","No alias","Arabidopsis thaliana","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUU4]","protein_coding"
"At1g48310","No alias","Arabidopsis thaliana","chromatin remodeling factor18 [Source:TAIR;Acc:AT1G48310]","protein_coding"
"At1g50410","No alias","Arabidopsis thaliana","Helicase-like transcription factor CHR28 [Source:UniProtKB/Swiss-Prot;Acc:Q94BR5]","protein_coding"
"At1g61140","No alias","Arabidopsis thaliana","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Source:UniProtKB/TrEMBL;Acc:F4HTG1]","protein_coding"
"At2g02090","No alias","Arabidopsis thaliana","ETL1 [Source:UniProtKB/TrEMBL;Acc:A0A178VWA6]","protein_coding"
"At2g13370","No alias","Arabidopsis thaliana","Protein CHROMATIN REMODELING 5 [Source:UniProtKB/Swiss-Prot;Acc:F4IV99]","protein_coding"
"At2g16390","No alias","Arabidopsis thaliana","SNF2 domain-containing protein / helicase domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B0G3]","protein_coding"
"At2g18760","No alias","Arabidopsis thaliana","chromatin remodeling 8 [Source:TAIR;Acc:AT2G18760]","protein_coding"
"At2g21450","No alias","Arabidopsis thaliana","chromatin remodeling 34 [Source:TAIR;Acc:AT2G21450]","protein_coding"
"At2g25170","No alias","Arabidopsis thaliana","chromatin remodeling factor CHD3 (PICKLE) [Source:TAIR;Acc:AT2G25170]","protein_coding"
"At2g28290","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B2X1]","protein_coding"
"At2g40770","No alias","Arabidopsis thaliana","RING-finger, DEAD-like helicase, PHD and SNF2 domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4II36]","protein_coding"
"At2g44980","No alias","Arabidopsis thaliana","Probable helicase CHR10 [Source:UniProtKB/Swiss-Prot;Acc:F4IV45]","protein_coding"
"At2g46020","No alias","Arabidopsis thaliana","ATP-dependent helicase BRM [Source:UniProtKB/Swiss-Prot;Acc:Q6EVK6]","protein_coding"
"At3g06010","No alias","Arabidopsis thaliana","Probable ATP-dependent DNA helicase CHR12 [Source:UniProtKB/Swiss-Prot;Acc:F4J9M5]","protein_coding"
"At3g06400","No alias","Arabidopsis thaliana","Chromatin-remodeling complex ATPase [Source:UniProtKB/TrEMBL;Acc:F4JAV9]","protein_coding"
"At3g12810","No alias","Arabidopsis thaliana","Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 [Source:UniProtKB/Swiss-Prot;Acc:Q7X9V2]","protein_coding"
"At3g16600","No alias","Arabidopsis thaliana","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [Source:UniProtKB/TrEMBL;Acc:F4J2R0]","protein_coding"
"At3g19210","No alias","Arabidopsis thaliana","Protein CHROMATIN REMODELING 25 [Source:UniProtKB/Swiss-Prot;Acc:Q0PCS3]","protein_coding"
"At3g20010","No alias","Arabidopsis thaliana","Helicase-like transcription factor CHR27 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHE4]","protein_coding"
"At3g24340","No alias","Arabidopsis thaliana","SNF2 domain-containing protein CLASSY 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK10]","protein_coding"
"At3g42670","No alias","Arabidopsis thaliana","Chromatin remodeling 38 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS2]","protein_coding"
"At3g54280","No alias","Arabidopsis thaliana","ROOT GROWTH DEFECTIVE 3 [Source:UniProtKB/TrEMBL;Acc:F4JCU6]","protein_coding"
"At3g54460","No alias","Arabidopsis thaliana","F-box protein At3g54460 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1I1]","protein_coding"
"At3g57300","No alias","Arabidopsis thaliana","DNA helicase INO80-like protein [Source:UniProtKB/TrEMBL;Acc:F4J277]","protein_coding"
"At4g31900","No alias","Arabidopsis thaliana","CHD3-type chromatin-remodeling factor CHR7 [Source:UniProtKB/Swiss-Prot;Acc:F4JTF6]","protein_coding"
"At5g05130","No alias","Arabidopsis thaliana","Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF61]","protein_coding"
"At5g07810","No alias","Arabidopsis thaliana","SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein [Source:TAIR;Acc:AT5G07810]","protein_coding"
"At5g18620","No alias","Arabidopsis thaliana","Chromatin-remodeling complex ATPase [Source:UniProtKB/TrEMBL;Acc:F4JY25]","protein_coding"
"At5g19310","No alias","Arabidopsis thaliana","Probable ATP-dependent DNA helicase CHR23 [Source:UniProtKB/Swiss-Prot;Acc:F4K128]","protein_coding"
"At5g20420","No alias","Arabidopsis thaliana","SNF2 domain-containing protein CLASSY 2 [Source:UniProtKB/Swiss-Prot;Acc:F4K493]","protein_coding"
"At5g22750","No alias","Arabidopsis thaliana","DNA repair protein RAD5A [Source:UniProtKB/Swiss-Prot;Acc:Q9FNI6]","protein_coding"
"At5g43530","No alias","Arabidopsis thaliana","DNA repair protein RAD5B [Source:UniProtKB/Swiss-Prot;Acc:Q9FIY7]","protein_coding"
"At5g44800","No alias","Arabidopsis thaliana","PKR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UKW2]","protein_coding"
"At5g63950","No alias","Arabidopsis thaliana","Protein CHROMATIN REMODELING 24 [Source:UniProtKB/Swiss-Prot;Acc:Q8W103]","protein_coding"
"At5g66750","No alias","Arabidopsis thaliana","ATP-dependent DNA helicase DDM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XFH4]","protein_coding"
"Bradi1g10360","No alias","Brachypodium distachyon","chromatin remodeling 1","protein_coding"
"Bradi1g14910","No alias","Brachypodium distachyon","switch 2","protein_coding"
"Bradi1g16720","No alias","Brachypodium distachyon","chromatin remodeling 38","protein_coding"
"Bradi1g17650","No alias","Brachypodium distachyon","zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding","protein_coding"
"Bradi1g18910","No alias","Brachypodium distachyon","chromatin remodeling 5","protein_coding"
"Bradi1g19820","No alias","Brachypodium distachyon","DNA/RNA helicase protein","protein_coding"
"Bradi1g20197","No alias","Brachypodium distachyon","chromatin remodeling factor18","protein_coding"
"Bradi1g22600","No alias","Brachypodium distachyon","SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein","protein_coding"
"Bradi1g26440","No alias","Brachypodium distachyon","Helicase protein with RING/U-box domain","protein_coding"
"Bradi1g26940","No alias","Brachypodium distachyon","chromatin remodeling 4","protein_coding"
"Bradi1g44177","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi1g45620","No alias","Brachypodium distachyon","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"Bradi1g47367","No alias","Brachypodium distachyon","chromatin remodeling factor CHD3 (PICKLE)","protein_coding"
"Bradi1g57635","No alias","Brachypodium distachyon","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Bradi1g62320","No alias","Brachypodium distachyon","INO80 ortholog","protein_coding"
"Bradi1g74070","No alias","Brachypodium distachyon","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Bradi1g78440","No alias","Brachypodium distachyon","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Bradi2g03617","No alias","Brachypodium distachyon","chromatin remodeling 8","protein_coding"
"Bradi2g12950","No alias","Brachypodium distachyon","chromatin-remodeling protein 11","protein_coding"
"Bradi2g14340","No alias","Brachypodium distachyon","DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases","protein_coding"
"Bradi2g19130","No alias","Brachypodium distachyon","chromatin remodeling 24","protein_coding"
"Bradi2g19211","No alias","Brachypodium distachyon","ATP-dependent helicase family protein","protein_coding"
"Bradi2g21432","No alias","Brachypodium distachyon","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Bradi2g21450","No alias","Brachypodium distachyon","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Bradi2g26500","No alias","Brachypodium distachyon","chromatin remodeling 31","protein_coding"
"Bradi2g35740","No alias","Brachypodium distachyon","chromatin-remodeling protein 11","protein_coding"
"Bradi2g36380","No alias","Brachypodium distachyon","Homeotic gene regulator","protein_coding"
"Bradi2g42340","No alias","Brachypodium distachyon","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Bradi2g43501","No alias","Brachypodium distachyon","chromatin remodeling 31","protein_coding"
"Bradi2g51727","No alias","Brachypodium distachyon","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"Bradi2g56870","No alias","Brachypodium distachyon","chromatin remodeling factor CHD3 (PICKLE)","protein_coding"
"Bradi2g60850","No alias","Brachypodium distachyon","SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein","protein_coding"
"Bradi3g01297","No alias","Brachypodium distachyon","transcription regulatory protein SNF2, putative","protein_coding"
"Bradi3g15380","No alias","Brachypodium distachyon","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"Bradi3g18907","No alias","Brachypodium distachyon","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Bradi3g19890","No alias","Brachypodium distachyon","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Bradi3g27970","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi3g36465","No alias","Brachypodium distachyon","chromatin remodeling 1","protein_coding"
"Bradi3g44690","No alias","Brachypodium distachyon","DNA/RNA helicase protein","protein_coding"
"Bradi3g50300","No alias","Brachypodium distachyon","chromatin remodeling 31","protein_coding"
"Bradi3g58092","No alias","Brachypodium distachyon","homolog of RAD54","protein_coding"
"Bradi4g07717","No alias","Brachypodium distachyon","ATP-dependent helicase family protein","protein_coding"
"Bradi4g09970","No alias","Brachypodium distachyon","chromatin-remodeling protein 11","protein_coding"
"Bradi4g40476","No alias","Brachypodium distachyon","chromatin remodeling 24","protein_coding"
"Bradi5g00770","No alias","Brachypodium distachyon","Helicase protein with RING/U-box domain","protein_coding"
"Bradi5g18520","No alias","Brachypodium distachyon","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Bradi5g22745","No alias","Brachypodium distachyon","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"Bradi5g27610","No alias","Brachypodium distachyon","chromatin remodeling 24","protein_coding"
"Brara.A00587.1","No alias","Brassica rapa","CHD3-type chromatin remodeling factor *(PKL/PKR)","protein_coding"
"Brara.A03677.1","No alias","Brassica rapa","SMARCA component *(SYD/BRM/MINU)","protein_coding"
"Brara.B00782.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.C00315.1","No alias","Brassica rapa","chromatin remodeling factor *(SMARCAL1)","protein_coding"
"Brara.C01014.1","No alias","Brassica rapa","chromatin remodeling factor *(Rad5)","protein_coding"
"Brara.C01994.1","No alias","Brassica rapa","SMARCA component *(SYD/BRM/MINU)","protein_coding"
"Brara.C03768.1","No alias","Brassica rapa","chromatin remodeling factor *(Ris1)","protein_coding"
"Brara.C03948.1","No alias","Brassica rapa","regulatory protein *(CLSY3/4) of transacting siRNA pathway","protein_coding"
"Brara.C04143.1","No alias","Brassica rapa","component *(DRD1) of DNA methylation accessory complex","protein_coding"
"Brara.D00292.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.D00294.1","No alias","Brassica rapa","ATPase component *(Ino80) of chromatin remodelling complex","protein_coding"
"Brara.D00466.1","No alias","Brassica rapa","chromatin remodeling factor *(SHPRH)","protein_coding"
"Brara.D02022.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.D02486.1","No alias","Brassica rapa","chromatin remodeling factor *(SHPRH)","protein_coding"
"Brara.E00474.1","No alias","Brassica rapa","chromatin remodeling factor *(ALC1)","protein_coding"
"Brara.E01921.1","No alias","Brassica rapa","chromatin remodeling factor *(SMARCAL1)","protein_coding"
"Brara.E02202.1","No alias","Brassica rapa","chromatin remodeling factor *(Ris1)","protein_coding"
"Brara.E02283.1","No alias","Brassica rapa","chromatin remodeling factor *(RAD54)","protein_coding"
"Brara.E02823.1","No alias","Brassica rapa","ATPase component *(PIE1) of SWR1 chromatin remodeling complex","protein_coding"
"Brara.F00312.1","No alias","Brassica rapa","chromatin remodeling factor *(Ris1)","protein_coding"
"Brara.F00539.1","No alias","Brassica rapa","chromatin remodeling factor *(ATRX)","protein_coding"
"Brara.F02275.1","No alias","Brassica rapa","chromatin remodeling factor *(ERCC6)","protein_coding"
"Brara.F03801.1","No alias","Brassica rapa","chromatin remodeling factor *(Rad5)","protein_coding"
"Brara.G00620.1","No alias","Brassica rapa","regulatory protein *(CLSY3/4) of transacting siRNA pathway","protein_coding"
"Brara.G01150.1","No alias","Brassica rapa","chromatin remodeling factor *(Ris1)","protein_coding"
"Brara.G01231.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.H00901.1","No alias","Brassica rapa","RDR2-polymerase accessory protein *(CLSY1/2) & regulatory protein *(CLSY3/4) of transacting siRNA pathway","protein_coding"
"Brara.H03012.1","No alias","Brassica rapa","chromatin remodeling factor *(Rad5-like)","protein_coding"
"Brara.I00886.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I00942.1","No alias","Brassica rapa","CHD1-type chromatin remodeling factor *(CHR5) & component *(CHR5) of SAGA transcription co-activator complex","protein_coding"
"Brara.I01861.1","No alias","Brassica rapa","CHD3-type chromatin remodeling factor *(PKL/PKR)","protein_coding"
"Brara.I02052.1","No alias","Brassica rapa","ATPase component *(Etl1)","protein_coding"
"Brara.I03698.1","No alias","Brassica rapa","TATA box-binding protein-associated factor *(MOT1) & chromatin remodeling factor *(Mot1)","protein_coding"
"Brara.I04444.1","No alias","Brassica rapa","CHD3-type chromatin remodeling factor *(PKL/PKR)","protein_coding"
"Brara.I05526.1","No alias","Brassica rapa","chromatin remodeling factor *(ERCC6)","protein_coding"
"Brara.J00330.1","No alias","Brassica rapa","chromatin remodeling factor *(Rad5-like)","protein_coding"
"Brara.J00334.1","No alias","Brassica rapa","chromatin remodeling factor *(Rad5-like)","protein_coding"
"Brara.J00372.1","No alias","Brassica rapa","regulatory protein *(CLSY3/4) of transacting siRNA pathway","protein_coding"
"Brara.J01574.1","No alias","Brassica rapa","RDR2-polymerase accessory protein *(CLSY1/2)","protein_coding"
"Brara.J01708.1","No alias","Brassica rapa","ATPase component *(CHR11/CHR17) of ISWI chromatin remodeling complexes","protein_coding"
"Brara.J02684.1","No alias","Brassica rapa","chromatin remodeling factor *(Rad5)","protein_coding"
"Brara.K00016.1","No alias","Brassica rapa","chromatin remodeling factor *(Rad5)","protein_coding"
"Brara.K00949.1","No alias","Brassica rapa","chromatin remodeling factor *(Ris1)","protein_coding"
"Brara.K01060.1","No alias","Brassica rapa","SMARCA component *(SYD/BRM/MINU)","protein_coding"
"Brara.K01890.1","No alias","Brassica rapa","chromatin remodeling factor *(ERCC6) & DNA repair protein *(CSB/ERCC6)","protein_coding"
"Cre01.g046237","No alias","Chlamydomonas reinhardtii","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"Cre02.g087600","No alias","Chlamydomonas reinhardtii","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Cre02.g143800","No alias","Chlamydomonas reinhardtii","switch 2","protein_coding"
"Cre03.g158550","No alias","Chlamydomonas reinhardtii","chromatin remodeling factor CHD3 (PICKLE)","protein_coding"
"Cre03.g162701","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre03.g179300","No alias","Chlamydomonas reinhardtii","chromatin remodeling 5","protein_coding"
"Cre03.g183350","No alias","Chlamydomonas reinhardtii","chromatin remodeling 24","protein_coding"
"Cre03.g189000","No alias","Chlamydomonas reinhardtii","homolog of RAD54","protein_coding"
"Cre03.g199350","No alias","Chlamydomonas reinhardtii","chromatin remodeling factor18","protein_coding"
"Cre03.g201850","No alias","Chlamydomonas reinhardtii","homolog of RAD54","protein_coding"
"Cre03.g210625","No alias","Chlamydomonas reinhardtii","DNA/RNA helicase protein","protein_coding"
"Cre05.g230800","No alias","Chlamydomonas reinhardtii","SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein","protein_coding"
"Cre05.g230803","No alias","Chlamydomonas reinhardtii","SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein","protein_coding"
"Cre05.g236950","No alias","Chlamydomonas reinhardtii","SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein","protein_coding"
"Cre06.g270850","No alias","Chlamydomonas reinhardtii","chromatin remodeling 8","protein_coding"
"Cre06.g287950","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre06.g304000","No alias","Chlamydomonas reinhardtii","zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding","protein_coding"
"Cre07.g325700","No alias","Chlamydomonas reinhardtii","transcription regulatory protein SNF2, putative","protein_coding"
"Cre08.g377200","No alias","Chlamydomonas reinhardtii","chromatin remodeling factor CHD3 (PICKLE)","protein_coding"
"Cre09.g390000","No alias","Chlamydomonas reinhardtii","chromatin remodeling factor17","protein_coding"
"Cre10.g430950","No alias","Chlamydomonas reinhardtii","homolog of RAD54","protein_coding"
"Cre10.g455750","No alias","Chlamydomonas reinhardtii","DNA/RNA helicase protein","protein_coding"
"Cre11.g479300","No alias","Chlamydomonas reinhardtii","Helicase protein with RING/U-box domain","protein_coding"
"Cre12.g508150","No alias","Chlamydomonas reinhardtii","chromatin-remodeling protein 11","protein_coding"
"Cre12.g537671","No alias","Chlamydomonas reinhardtii","chromatin remodeling 4","protein_coding"
"Cre13.g603400","No alias","Chlamydomonas reinhardtii","zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding","protein_coding"
"Cre14.g614400","No alias","Chlamydomonas reinhardtii","DNA/RNA helicase protein","protein_coding"
"Cre14.g618860","No alias","Chlamydomonas reinhardtii","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Cre16.g647602","No alias","Chlamydomonas reinhardtii","chromatin remodeling 1","protein_coding"
"Cre16.g687301","No alias","Chlamydomonas reinhardtii","DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases","protein_coding"
"evm.model.contig_2073.11","No alias","Porphyridium purpureum","(at1g48310 : 229.0) chromatin remodeling factor18 (CHR18); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (TAIR:AT5G07810.1); Has 16435 Blast hits to 14312 proteins in 1741 species: Archae - 101; Bacteria - 4551; Metazoa - 3441; Fungi - 3785; Plants - 1315; Viruses - 143; Other Eukaryotes - 3099 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 101.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 458.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2077.13","No alias","Porphyridium purpureum","(at2g13370 : 595.0) chromatin remodeling 5 (CHR5); FUNCTIONS IN: chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 38529 Blast hits to 28045 proteins in 2467 species: Archae - 189; Bacteria - 9973; Metazoa - 8887; Fungi - 6205; Plants - 2508; Viruses - 447; Other Eukaryotes - 10320 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 419.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1190.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2132.9","No alias","Porphyridium purpureum","(at3g06010 : 612.0) Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein.  AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.; ATCHR12; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to water deprivation, response to salt stress, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT5G19310.1); Has 23556 Blast hits to 19403 proteins in 2220 species: Archae - 141; Bacteria - 6122; Metazoa - 5759; Fungi - 4503; Plants - 1859; Viruses - 268; Other Eukaryotes - 4904 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 465.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1224.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2180.3","No alias","Porphyridium purpureum","(at3g54460 : 302.0) SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), SNF2-related (InterPro:IPR000330), F-box domain, Skp2-like (InterPro:IPR022364), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 15028 Blast hits to 11196 proteins in 1367 species: Archae - 59; Bacteria - 4030; Metazoa - 3400; Fungi - 4173; Plants - 1458; Viruses - 121; Other Eukaryotes - 1787 (source: NCBI BLink). & (reliability: 604.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2672.1","No alias","Porphyridium purpureum","(at2g25170 : 447.0) Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1.  Is an extragenic suppressor of slr2 (SSL2).  Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1.  It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis.; PICKLE (PKL); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF1086 (InterPro:IPR009462), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor, putative (TAIR:AT4G31900.1); Has 20234 Blast hits to 17178 proteins in 1958 species: Archae - 161; Bacteria - 5176; Metazoa - 5098; Fungi - 4334; Plants - 1876; Viruses - 134; Other Eukaryotes - 3455 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 397.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 892.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3423.21","No alias","Porphyridium purpureum","(at1g05120 : 643.0) Helicase protein with RING/U-box domain; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G02670.1); Has 29218 Blast hits to 14448 proteins in 1607 species: Archae - 124; Bacteria - 8622; Metazoa - 6656; Fungi - 6694; Plants - 2674; Viruses - 189; Other Eukaryotes - 4259 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 88.6) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1286.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4438.19","No alias","Porphyridium purpureum","(at3g06010 : 317.0) Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein.  AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.; ATCHR12; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to water deprivation, response to salt stress, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT5G19310.1); Has 23556 Blast hits to 19403 proteins in 2220 species: Archae - 141; Bacteria - 6122; Metazoa - 5759; Fungi - 4503; Plants - 1859; Viruses - 268; Other Eukaryotes - 4904 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 276.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 634.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4474.1","No alias","Porphyridium purpureum","(at3g12810 : 667.0) Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6).; PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (PIE1); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: SWI/SNF complex, cell wall, chromatin remodeling complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: HSA (InterPro:IPR006562), HAS subgroup (InterPro:IPR013999), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), SNF2-related (InterPro:IPR000330), MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: INO80 ortholog (TAIR:AT3G57300.1); Has 42311 Blast hits to 26312 proteins in 2357 species: Archae - 246; Bacteria - 10217; Metazoa - 11172; Fungi - 7336; Plants - 2916; Viruses - 500; Other Eukaryotes - 9924 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 232.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (gnl|cdd|68872 : 95.9) no description available & (reliability: 1334.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4476.3","No alias","Porphyridium purpureum","(at1g03750 : 287.0) switch 2 (SWI2); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1); Has 20033 Blast hits to 14398 proteins in 1655 species: Archae - 120; Bacteria - 5954; Metazoa - 4199; Fungi - 4321; Plants - 1927; Viruses - 177; Other Eukaryotes - 3335 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 132.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 574.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4483.9","No alias","Porphyridium purpureum","(at2g40770 : 437.0) zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1); Has 20880 Blast hits to 12947 proteins in 1504 species: Archae - 88; Bacteria - 5732; Metazoa - 4955; Fungi - 5171; Plants - 2134; Viruses - 115; Other Eukaryotes - 2685 (source: NCBI BLink). & (reliability: 874.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_452.16","No alias","Porphyridium purpureum","(at3g19210 : 335.0) Encodes RAD54, a member of the SWI2/SNF2 family of DNA-stimulated ATPases.  Functions in DNA repair via homologous recombination.; homolog of RAD54 (RAD54); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: DNA repair, response to gamma radiation, double-strand break repair via homologous recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: style (sensu Poaceae), hydathode, root, petiole; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: switch 2 (TAIR:AT1G03750.1). & (q7g8y3|isw2_orysa : 184.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 670.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4527.1","No alias","Porphyridium purpureum","(at3g06010 : 582.0) Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein.  AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.; ATCHR12; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to water deprivation, response to salt stress, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT5G19310.1); Has 23556 Blast hits to 19403 proteins in 2220 species: Archae - 141; Bacteria - 6122; Metazoa - 5759; Fungi - 4503; Plants - 1859; Viruses - 268; Other Eukaryotes - 4904 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 442.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (gnl|cdd|68872 : 96.6) no description available & (reliability: 1164.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_483.3","No alias","Porphyridium purpureum","(at5g18620 : 838.0) chromatin remodeling factor17 (CHR17); FUNCTIONS IN: in 7 functions; INVOLVED IN: ATP-dependent chromatin remodeling, chromatin remodeling; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), SLIDE (InterPro:IPR015195), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin-remodeling protein 11 (TAIR:AT3G06400.2); Has 25193 Blast hits to 20371 proteins in 2196 species: Archae - 142; Bacteria - 5974; Metazoa - 6066; Fungi - 4943; Plants - 1903; Viruses - 481; Other Eukaryotes - 5684 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 820.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1664.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_524.6","No alias","Porphyridium purpureum","(at5g22750 : 317.0) DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer; RAD5; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: embryo, sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT5G43530.1); Has 27107 Blast hits to 18179 proteins in 1771 species: Archae - 108; Bacteria - 7266; Metazoa - 8140; Fungi - 5089; Plants - 2446; Viruses - 173; Other Eukaryotes - 3885 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 119.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 634.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_640.1","No alias","Porphyridium purpureum","(at3g54280 : 588.0) ROOT GROWTH DEFECTIVE 3 (RGD3); FUNCTIONS IN: helicase activity, binding, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), DEAD-like helicase, N-terminal (InterPro:IPR014001), Armadillo-type fold (InterPro:IPR016024), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1). & (q7g8y3|isw2_orysa : 219.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1176.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_664.3","No alias","Porphyridium purpureum","(at3g57300 : 386.0) Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family.  Functions as a positive regulator of DNA homologous recombination (HR).  In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type.  Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration.  INO80 was also shown to regulate a subset of the Arabidopsis transcriptome.; INO80 ortholog (INO80); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: somatic cell DNA recombination, positive regulation of DNA repair, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA binding domain, INO80 (InterPro:IPR020838), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein (TAIR:AT3G12810.1). & (q7g8y3|isw2_orysa : 258.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 772.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_686.2","No alias","Porphyridium purpureum","(at2g18760 : 322.0) chromatin remodeling 8 (CHR8); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: DNA repair, response to gamma radiation; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 24 (TAIR:AT5G63950.1); Has 17230 Blast hits to 14463 proteins in 1653 species: Archae - 99; Bacteria - 4180; Metazoa - 3846; Fungi - 4219; Plants - 1677; Viruses - 118; Other Eukaryotes - 3091 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 226.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 644.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000128.11","No alias","Cyanophora paradoxa","(at5g18620 : 692.0) chromatin remodeling factor17 (CHR17); FUNCTIONS IN: in 7 functions; INVOLVED IN: ATP-dependent chromatin remodeling, chromatin remodeling; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), SLIDE (InterPro:IPR015195), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin-remodeling protein 11 (TAIR:AT3G06400.2); Has 25193 Blast hits to 20371 proteins in 2196 species: Archae - 142; Bacteria - 5974; Metazoa - 6066; Fungi - 4943; Plants - 1903; Viruses - 481; Other Eukaryotes - 5684 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 684.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1384.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000194.25","No alias","Cyanophora paradoxa","(at3g12810 : 432.0) Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6).; PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (PIE1); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: SWI/SNF complex, cell wall, chromatin remodeling complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: HSA (InterPro:IPR006562), HAS subgroup (InterPro:IPR013999), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), SNF2-related (InterPro:IPR000330), MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: INO80 ortholog (TAIR:AT3G57300.1); Has 42311 Blast hits to 26312 proteins in 2357 species: Archae - 246; Bacteria - 10217; Metazoa - 11172; Fungi - 7336; Plants - 2916; Viruses - 500; Other Eukaryotes - 9924 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 149.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 864.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000194.26","No alias","Cyanophora paradoxa","(at3g12810 : 251.0) Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6).; PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (PIE1); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: SWI/SNF complex, cell wall, chromatin remodeling complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: HSA (InterPro:IPR006562), HAS subgroup (InterPro:IPR013999), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), SNF2-related (InterPro:IPR000330), MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: INO80 ortholog (TAIR:AT3G57300.1); Has 42311 Blast hits to 26312 proteins in 2357 species: Archae - 246; Bacteria - 10217; Metazoa - 11172; Fungi - 7336; Plants - 2916; Viruses - 500; Other Eukaryotes - 9924 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 143.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 502.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000217.25","No alias","Cyanophora paradoxa","(at2g28290 : 284.0) Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral  homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates  flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation.  Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms  differs in juvenile and in adult tissues. The C-terminal domain is not required for activity.; SPLAYED (SYD); CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1); Has 38598 Blast hits to 29293 proteins in 2471 species: Archae - 323; Bacteria - 8462; Metazoa - 11641; Fungi - 6683; Plants - 2383; Viruses - 257; Other Eukaryotes - 8849 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 233.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 532.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000241.138","No alias","Cyanophora paradoxa","(at1g48310 : 122.0) chromatin remodeling factor18 (CHR18); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (TAIR:AT5G07810.1); Has 16435 Blast hits to 14312 proteins in 1741 species: Archae - 101; Bacteria - 4551; Metazoa - 3441; Fungi - 3785; Plants - 1315; Viruses - 143; Other Eukaryotes - 3099 (source: NCBI BLink). & (reliability: 244.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000339.25","No alias","Cyanophora paradoxa","(at1g08600 : 146.0) ATRX; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1). & (q7g8y3|isw2_orysa : 88.6) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 292.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000350.9","No alias","Cyanophora paradoxa","(at2g25170 : 212.0) Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1.  Is an extragenic suppressor of slr2 (SSL2).  Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1.  It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis.; PICKLE (PKL); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF1086 (InterPro:IPR009462), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor, putative (TAIR:AT4G31900.1); Has 20234 Blast hits to 17178 proteins in 1958 species: Archae - 161; Bacteria - 5176; Metazoa - 5098; Fungi - 4334; Plants - 1876; Viruses - 134; Other Eukaryotes - 3455 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 183.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 414.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000378.31","No alias","Cyanophora paradoxa","(at5g22750 : 210.0) DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer; RAD5; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: embryo, sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT5G43530.1); Has 27107 Blast hits to 18179 proteins in 1771 species: Archae - 108; Bacteria - 7266; Metazoa - 8140; Fungi - 5089; Plants - 2446; Viruses - 173; Other Eukaryotes - 3885 (source: NCBI BLink). & (reliability: 420.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000441.21","No alias","Cyanophora paradoxa","(at5g63950 : 284.0) chromatin remodeling 24 (CHR24); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 8 (TAIR:AT2G18760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 107.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 568.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000478.40","No alias","Cyanophora paradoxa","(at1g03750 : 118.0) switch 2 (SWI2); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1); Has 20033 Blast hits to 14398 proteins in 1655 species: Archae - 120; Bacteria - 5954; Metazoa - 4199; Fungi - 4321; Plants - 1927; Viruses - 177; Other Eukaryotes - 3335 (source: NCBI BLink). & (reliability: 236.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000545.10","No alias","Cyanophora paradoxa","(at3g06010 : 472.0) Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein.  AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.; ATCHR12; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to water deprivation, response to salt stress, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT5G19310.1); Has 23556 Blast hits to 19403 proteins in 2220 species: Archae - 141; Bacteria - 6122; Metazoa - 5759; Fungi - 4503; Plants - 1859; Viruses - 268; Other Eukaryotes - 4904 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 377.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 944.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000571.26","No alias","Cyanophora paradoxa","(at1g08600 : 102.0) ATRX; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1). & (reliability: 204.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000605.2","No alias","Cyanophora paradoxa","(at3g19210 : 170.0) Encodes RAD54, a member of the SWI2/SNF2 family of DNA-stimulated ATPases.  Functions in DNA repair via homologous recombination.; homolog of RAD54 (RAD54); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: DNA repair, response to gamma radiation, double-strand break repair via homologous recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: style (sensu Poaceae), hydathode, root, petiole; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: switch 2 (TAIR:AT1G03750.1). & (q7g8y3|isw2_orysa : 108.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 340.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000655.65","No alias","Cyanophora paradoxa","(at5g05130 : 110.0) DNA/RNA helicase protein; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 220.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000691.35","No alias","Cyanophora paradoxa","(at3g06010 : 234.0) Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein.  AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.; ATCHR12; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to water deprivation, response to salt stress, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT5G19310.1); Has 23556 Blast hits to 19403 proteins in 2220 species: Archae - 141; Bacteria - 6122; Metazoa - 5759; Fungi - 4503; Plants - 1859; Viruses - 268; Other Eukaryotes - 4904 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 220.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 468.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000711.69","No alias","Cyanophora paradoxa","(at5g43530 : 188.0) Helicase protein with RING/U-box domain; FUNCTIONS IN: in 6 functions; LOCATED IN: chloroplast envelope; EXPRESSED IN: shoot apex, embryo, male gametophyte, flower, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 360.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000733.15","No alias","Cyanophora paradoxa","(at1g08600 : 95.9) ATRX; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1). & (reliability: 191.8) &  (original description: no original description)","protein_coding"
"evm.model.tig00000802.67","No alias","Cyanophora paradoxa","(at3g06010 : 465.0) Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein.  AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.; ATCHR12; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to water deprivation, response to salt stress, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT5G19310.1); Has 23556 Blast hits to 19403 proteins in 2220 species: Archae - 141; Bacteria - 6122; Metazoa - 5759; Fungi - 4503; Plants - 1859; Viruses - 268; Other Eukaryotes - 4904 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 361.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 930.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000808.1","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000826.20","No alias","Cyanophora paradoxa","(at5g43530 : 117.0) Helicase protein with RING/U-box domain; FUNCTIONS IN: in 6 functions; LOCATED IN: chloroplast envelope; EXPRESSED IN: shoot apex, embryo, male gametophyte, flower, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 234.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000863.2","No alias","Cyanophora paradoxa","(at3g54280 : 205.0) ROOT GROWTH DEFECTIVE 3 (RGD3); FUNCTIONS IN: helicase activity, binding, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), DEAD-like helicase, N-terminal (InterPro:IPR014001), Armadillo-type fold (InterPro:IPR016024), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1). & (q7g8y3|isw2_orysa : 181.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 410.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000983.26","No alias","Cyanophora paradoxa","(at2g13370 : 651.0) chromatin remodeling 5 (CHR5); FUNCTIONS IN: chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 38529 Blast hits to 28045 proteins in 2467 species: Archae - 189; Bacteria - 9973; Metazoa - 8887; Fungi - 6205; Plants - 2508; Viruses - 447; Other Eukaryotes - 10320 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 453.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1302.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000989.25","No alias","Cyanophora paradoxa","(at4g31900 : 159.0) PICKLE RELATED 2 (PKR2); FUNCTIONS IN: in 6 functions; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), DEAD-like helicase, N-terminal (InterPro:IPR014001), Protein of unknown function DUF1086 (InterPro:IPR009462), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1). & (q7g8y3|isw2_orysa : 145.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 294.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001107.26","No alias","Cyanophora paradoxa","(at3g54280 : 157.0) ROOT GROWTH DEFECTIVE 3 (RGD3); FUNCTIONS IN: helicase activity, binding, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), DEAD-like helicase, N-terminal (InterPro:IPR014001), Armadillo-type fold (InterPro:IPR016024), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1). & (q7g8y3|isw2_orysa : 85.1) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 314.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001292.5","No alias","Cyanophora paradoxa","(at5g63950 : 213.0) chromatin remodeling 24 (CHR24); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 8 (TAIR:AT2G18760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 120.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 426.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001304.2","No alias","Cyanophora paradoxa","(at5g43530 : 228.0) Helicase protein with RING/U-box domain; FUNCTIONS IN: in 6 functions; LOCATED IN: chloroplast envelope; EXPRESSED IN: shoot apex, embryo, male gametophyte, flower, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 442.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020537.55","No alias","Cyanophora paradoxa","(at2g40770 : 87.4) zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1); Has 20880 Blast hits to 12947 proteins in 1504 species: Archae - 88; Bacteria - 5732; Metazoa - 4955; Fungi - 5171; Plants - 2134; Viruses - 115; Other Eukaryotes - 2685 (source: NCBI BLink). & (reliability: 174.8) &  (original description: no original description)","protein_coding"
"evm.model.tig00020556.80","No alias","Cyanophora paradoxa","(at1g08600 : 177.0) ATRX; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1). & (q7g8y3|isw2_orysa : 110.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 354.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020614.39","No alias","Cyanophora paradoxa","(at3g19210 : 499.0) Encodes RAD54, a member of the SWI2/SNF2 family of DNA-stimulated ATPases.  Functions in DNA repair via homologous recombination.; homolog of RAD54 (RAD54); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: DNA repair, response to gamma radiation, double-strand break repair via homologous recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: style (sensu Poaceae), hydathode, root, petiole; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: switch 2 (TAIR:AT1G03750.1). & (q7g8y3|isw2_orysa : 192.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 998.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020614.60","No alias","Cyanophora paradoxa","(at5g22750 : 279.0) DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer; RAD5; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: embryo, sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT5G43530.1); Has 27107 Blast hits to 18179 proteins in 1771 species: Archae - 108; Bacteria - 7266; Metazoa - 8140; Fungi - 5089; Plants - 2446; Viruses - 173; Other Eukaryotes - 3885 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 84.7) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 558.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020710.56","No alias","Cyanophora paradoxa","(at2g40770 : 145.0) zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1); Has 20880 Blast hits to 12947 proteins in 1504 species: Archae - 88; Bacteria - 5732; Metazoa - 4955; Fungi - 5171; Plants - 2134; Viruses - 115; Other Eukaryotes - 2685 (source: NCBI BLink). & (reliability: 290.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020800.32","No alias","Cyanophora paradoxa","(at1g05120 : 113.0) Helicase protein with RING/U-box domain; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G02670.1); Has 29218 Blast hits to 14448 proteins in 1607 species: Archae - 124; Bacteria - 8622; Metazoa - 6656; Fungi - 6694; Plants - 2674; Viruses - 189; Other Eukaryotes - 4259 (source: NCBI BLink). & (reliability: 226.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020825.19","No alias","Cyanophora paradoxa","(at2g13370 : 429.0) chromatin remodeling 5 (CHR5); FUNCTIONS IN: chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 38529 Blast hits to 28045 proteins in 2467 species: Archae - 189; Bacteria - 9973; Metazoa - 8887; Fungi - 6205; Plants - 2508; Viruses - 447; Other Eukaryotes - 10320 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 344.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 858.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020830.109","No alias","Cyanophora paradoxa","(at1g05120 : 89.4) Helicase protein with RING/U-box domain; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G02670.1); Has 29218 Blast hits to 14448 proteins in 1607 species: Archae - 124; Bacteria - 8622; Metazoa - 6656; Fungi - 6694; Plants - 2674; Viruses - 189; Other Eukaryotes - 4259 (source: NCBI BLink). & (reliability: 178.8) &  (original description: no original description)","protein_coding"
"evm.model.tig00020848.66","No alias","Cyanophora paradoxa","(at2g44980 : 201.0) SNF2 domain-containing protein / helicase domain-containing protein; FUNCTIONS IN: transcription regulator activity, helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 17488 Blast hits to 15031 proteins in 1958 species: Archae - 101; Bacteria - 5047; Metazoa - 3666; Fungi - 3968; Plants - 1607; Viruses - 135; Other Eukaryotes - 2964 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 190.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 402.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020912.86","No alias","Cyanophora paradoxa","(at1g08600 : 154.0) ATRX; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1). & (q7g8y3|isw2_orysa : 84.7) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 308.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020960.24","No alias","Cyanophora paradoxa","(at2g13370 : 202.0) chromatin remodeling 5 (CHR5); FUNCTIONS IN: chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 38529 Blast hits to 28045 proteins in 2467 species: Archae - 189; Bacteria - 9973; Metazoa - 8887; Fungi - 6205; Plants - 2508; Viruses - 447; Other Eukaryotes - 10320 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 173.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 404.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021012.22","No alias","Cyanophora paradoxa","(at1g48310 : 352.0) chromatin remodeling factor18 (CHR18); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (TAIR:AT5G07810.1); Has 16435 Blast hits to 14312 proteins in 1741 species: Archae - 101; Bacteria - 4551; Metazoa - 3441; Fungi - 3785; Plants - 1315; Viruses - 143; Other Eukaryotes - 3099 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 110.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 704.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021012.40","No alias","Cyanophora paradoxa","(at1g48310 : 304.0) chromatin remodeling factor18 (CHR18); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (TAIR:AT5G07810.1); Has 16435 Blast hits to 14312 proteins in 1741 species: Archae - 101; Bacteria - 4551; Metazoa - 3441; Fungi - 3785; Plants - 1315; Viruses - 143; Other Eukaryotes - 3099 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 96.3) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 608.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021014.10","No alias","Cyanophora paradoxa","(at5g22750 : 175.0) DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer; RAD5; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: embryo, sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT5G43530.1); Has 27107 Blast hits to 18179 proteins in 1771 species: Archae - 108; Bacteria - 7266; Metazoa - 8140; Fungi - 5089; Plants - 2446; Viruses - 173; Other Eukaryotes - 3885 (source: NCBI BLink). & (reliability: 350.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021105.35","No alias","Cyanophora paradoxa","(at5g43530 : 225.0) Helicase protein with RING/U-box domain; FUNCTIONS IN: in 6 functions; LOCATED IN: chloroplast envelope; EXPRESSED IN: shoot apex, embryo, male gametophyte, flower, seed; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 109.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 446.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021168.60","No alias","Cyanophora paradoxa","(at1g48310 : 252.0) chromatin remodeling factor18 (CHR18); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (TAIR:AT5G07810.1); Has 16435 Blast hits to 14312 proteins in 1741 species: Archae - 101; Bacteria - 4551; Metazoa - 3441; Fungi - 3785; Plants - 1315; Viruses - 143; Other Eukaryotes - 3099 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 87.4) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 504.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021275.25","No alias","Cyanophora paradoxa","(q7g8y3|isw2_orysa : 367.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (at3g06400 : 365.0) Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature.; chromatin-remodeling protein 11 (CHR11); FUNCTIONS IN: in 7 functions; INVOLVED IN: cell growth, embryo sac development; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), SLIDE (InterPro:IPR015195), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2). & (reliability: 730.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021293.6","No alias","Cyanophora paradoxa","(at5g22750 : 259.0) DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer; RAD5; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: embryo, sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT5G43530.1); Has 27107 Blast hits to 18179 proteins in 1771 species: Archae - 108; Bacteria - 7266; Metazoa - 8140; Fungi - 5089; Plants - 2446; Viruses - 173; Other Eukaryotes - 3885 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 80.9) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 518.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021463.8","No alias","Cyanophora paradoxa","(at2g18760 : 524.0) chromatin remodeling 8 (CHR8); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: DNA repair, response to gamma radiation; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 24 (TAIR:AT5G63950.1); Has 17230 Blast hits to 14463 proteins in 1653 species: Archae - 99; Bacteria - 4180; Metazoa - 3846; Fungi - 4219; Plants - 1677; Viruses - 118; Other Eukaryotes - 3091 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 248.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1048.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021501.9","No alias","Cyanophora paradoxa","(at3g57300 : 465.0) Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family.  Functions as a positive regulator of DNA homologous recombination (HR).  In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type.  Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration.  INO80 was also shown to regulate a subset of the Arabidopsis transcriptome.; INO80 ortholog (INO80); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: somatic cell DNA recombination, positive regulation of DNA repair, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA binding domain, INO80 (InterPro:IPR020838), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein (TAIR:AT3G12810.1). & (q7g8y3|isw2_orysa : 244.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 930.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021623.13","No alias","Cyanophora paradoxa","(at2g25170 : 464.0) Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1.  Is an extragenic suppressor of slr2 (SSL2).  Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1.  It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis.; PICKLE (PKL); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF1086 (InterPro:IPR009462), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor, putative (TAIR:AT4G31900.1); Has 20234 Blast hits to 17178 proteins in 1958 species: Archae - 161; Bacteria - 5176; Metazoa - 5098; Fungi - 4334; Plants - 1876; Viruses - 134; Other Eukaryotes - 3455 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 369.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 872.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021760.3","No alias","Cyanophora paradoxa","(at1g08600 : 223.0) ATRX; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1). & (reliability: 446.0) &  (original description: no original description)","protein_coding"
"Glyma.01G073400","No alias","Glycine max","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Glyma.01G175300","No alias","Glycine max","chromatin remodeling 1","protein_coding"
"Glyma.01G244700","No alias","Glycine max","homolog of RAD54","protein_coding"
"Glyma.02G174100","No alias","Glycine max","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Glyma.02G219200","No alias","Glycine max","zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding","protein_coding"
"Glyma.02G261800","No alias","Glycine max","chromatin remodeling 42","protein_coding"
"Glyma.02G281000","No alias","Glycine max","chromatin remodeling 5","protein_coding"
"Glyma.03G124900","No alias","Glycine max","DNA/RNA helicase protein","protein_coding"
"Glyma.03G133700","No alias","Glycine max","INO80 ortholog","protein_coding"
"Glyma.03G181800","No alias","Glycine max","chromatin remodeling 4","protein_coding"
"Glyma.04G062400","No alias","Glycine max","chromatin remodeling factor CHD3 (PICKLE)","protein_coding"
"Glyma.04G138300","No alias","Glycine max","SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein","protein_coding"
"Glyma.05G131500","No alias","Glycine max","chromatin remodeling 4","protein_coding"
"Glyma.05G193900","No alias","Glycine max","chromatin remodeling 24","protein_coding"
"Glyma.06G063400","No alias","Glycine max","chromatin remodeling factor CHD3 (PICKLE)","protein_coding"
"Glyma.06G199800","No alias","Glycine max","SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein","protein_coding"
"Glyma.07G069400","No alias","Glycine max","transcription regulatory protein SNF2, putative","protein_coding"
"Glyma.07G157900","No alias","Glycine max","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Glyma.07G192500","No alias","Glycine max","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"Glyma.07G250700","No alias","Glycine max","chromatin remodeling factor17","protein_coding"
"Glyma.07G252100","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.08G001900","No alias","Glycine max","chromatin remodeling 24","protein_coding"
"Glyma.08G086100","No alias","Glycine max","chromatin remodeling 4","protein_coding"
"Glyma.08G339800","No alias","Glycine max","chromatin remodeling 31","protein_coding"
"Glyma.08G339900","No alias","Glycine max","chromatin remodeling 31","protein_coding"
"Glyma.09G112200","No alias","Glycine max","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Glyma.09G229400","No alias","Glycine max","chromatin remodeling 31","protein_coding"
"Glyma.09G234400","No alias","Glycine max","DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases","protein_coding"
"Glyma.09G257900","No alias","Glycine max","transcription regulatory protein SNF2, putative","protein_coding"
"Glyma.10G038300","No alias","Glycine max","chromatin remodeling 8","protein_coding"
"Glyma.10G106500","No alias","Glycine max","INO80 ortholog","protein_coding"
"Glyma.10G165000","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.10G250500","No alias","Glycine max","Homeotic gene regulator","protein_coding"
"Glyma.10G288200","No alias","Glycine max","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"Glyma.11G004100","No alias","Glycine max","Homeotic gene regulator","protein_coding"
"Glyma.11G067500","No alias","Glycine max","chromatin remodeling 1","protein_coding"
"Glyma.11G154800","No alias","Glycine max","SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein","protein_coding"
"Glyma.12G002300","No alias","Glycine max","DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases","protein_coding"
"Glyma.12G006900","No alias","Glycine max","chromatin remodeling 31","protein_coding"
"Glyma.12G115800","No alias","Glycine max","switch 2","protein_coding"
"Glyma.12G180800","No alias","Glycine max","DNA/RNA helicase protein","protein_coding"
"Glyma.12G192700","No alias","Glycine max","Helicase protein with RING/U-box domain","protein_coding"
"Glyma.12G236100","No alias","Glycine max","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Glyma.13G118200","No alias","Glycine max","chromatin remodeling factor18","protein_coding"
"Glyma.13G124600","No alias","Glycine max","chromatin remodeling 8","protein_coding"
"Glyma.13G183900","No alias","Glycine max","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"Glyma.13G201800","No alias","Glycine max","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Glyma.13G215900","No alias","Glycine max","chromatin-remodeling protein 11","protein_coding"
"Glyma.13G243600","No alias","Glycine max","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"Glyma.13G309700","No alias","Glycine max","Helicase protein with RING/U-box domain","protein_coding"
"Glyma.13G320000","No alias","Glycine max","DNA/RNA helicase protein","protein_coding"
"Glyma.14G033600","No alias","Glycine max","chromatin remodeling 5","protein_coding"
"Glyma.15G070100","No alias","Glycine max","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"Glyma.15G097000","No alias","Glycine max","chromatin remodeling factor17","protein_coding"
"Glyma.16G035100","No alias","Glycine max","transcription regulatory protein SNF2, putative","protein_coding"
"Glyma.17G022300","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.17G023600","No alias","Glycine max","chromatin remodeling factor17","protein_coding"
"Glyma.17G041700","No alias","Glycine max","chromatin remodeling factor18","protein_coding"
"Glyma.17G217300","No alias","Glycine max","chromatin remodeling factor CHD3 (PICKLE)","protein_coding"
"Glyma.18G023900","No alias","Glycine max","chromatin remodeling 38","protein_coding"
"Glyma.18G234700","No alias","Glycine max","transcription regulatory protein SNF2, putative","protein_coding"
"Glyma.19G136000","No alias","Glycine max","INO80 ortholog","protein_coding"
"Glyma.20G005700","No alias","Glycine max","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Glyma.20G087900","No alias","Glycine max","Helicase protein with RING/U-box domain","protein_coding"
"Glyma.20G100800","No alias","Glycine max","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"Glyma.20G143200","No alias","Glycine max","Homeotic gene regulator","protein_coding"
"Glyma.20G227200","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.U027200","No alias","Glycine max","chromatin remodeling 42","protein_coding"
"GRMZM2G007922","No alias","Zea mays","INO80 ortholog","protein_coding"
"GRMZM2G010085","No alias","Zea mays","chromatin remodeling factor17","protein_coding"
"GRMZM2G010342","No alias","Zea mays","chromatin remodeling 5","protein_coding"
"GRMZM2G015190","No alias","Zea mays","DNA/RNA helicase protein","protein_coding"
"GRMZM2G021233","No alias","Zea mays","Helicase protein with RING/U-box domain","protein_coding"
"GRMZM2G030768","No alias","Zea mays","Helicase protein with RING/U-box domain","protein_coding"
"GRMZM2G049168","No alias","Zea mays","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"GRMZM2G070264","No alias","Zea mays","chromatin remodeling 8","protein_coding"
"GRMZM2G071025","No alias","Zea mays","chromatin remodeling 1","protein_coding"
"GRMZM2G097289","No alias","Zea mays","Homeotic gene regulator","protein_coding"
"GRMZM2G098236","No alias","Zea mays","MAP kinase 20","protein_coding"
"GRMZM2G102625","No alias","Zea mays","Homeotic gene regulator","protein_coding"
"GRMZM2G108166","No alias","Zea mays","chromatin remodeling 38","protein_coding"
"GRMZM2G117060","No alias","Zea mays","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"GRMZM2G126774","No alias","Zea mays","chromatin remodeling factor18","protein_coding"
"GRMZM2G138125","No alias","Zea mays","chromatin remodeling 24","protein_coding"
"GRMZM2G141258","No alias","Zea mays","chromatin remodeling 5","protein_coding"
"GRMZM2G142448","No alias","Zea mays","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"GRMZM2G146041","No alias","Zea mays","switch 2","protein_coding"
"GRMZM2G148249","No alias","Zea mays","DNA/RNA helicase protein","protein_coding"
"GRMZM2G152306","No alias","Zea mays","S-locus lectin protein kinase family protein","protein_coding"
"GRMZM2G154946","No alias","Zea mays","chromatin remodeling 31","protein_coding"
"GRMZM2G157670","No alias","Zea mays","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"GRMZM2G163436","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G163849","No alias","Zea mays","transcription regulatory protein SNF2, putative","protein_coding"
"GRMZM2G168096","No alias","Zea mays","DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases","protein_coding"
"GRMZM2G175743","No alias","Zea mays","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"GRMZM2G177165","No alias","Zea mays","chromatin remodeling 1","protein_coding"
"GRMZM2G178435","No alias","Zea mays","chromatin remodeling 31","protein_coding"
"GRMZM2G313833","No alias","Zea mays","PRP38 family protein","protein_coding"
"GRMZM2G316191","No alias","Zea mays","chromatin remodeling 4","protein_coding"
"GRMZM2G324781","No alias","Zea mays","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"GRMZM2G340763","No alias","Zea mays","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"GRMZM2G379804","No alias","Zea mays","SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein","protein_coding"
"GRMZM2G381402","No alias","Zea mays","zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding","protein_coding"
"GRMZM2G393742","No alias","Zea mays","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"GRMZM2G398845","No alias","Zea mays","switch 2","protein_coding"
"GRMZM2G428242","No alias","Zea mays","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"GRMZM2G431291","No alias","Zea mays","O-fucosyltransferase family protein","protein_coding"
"GRMZM2G445803","No alias","Zea mays","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"GRMZM2G449355","No alias","Zea mays","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"GRMZM2G469162","No alias","Zea mays","INO80 ortholog","protein_coding"
"GRMZM2G472428","No alias","Zea mays","ATP-dependent helicase family protein","protein_coding"
"GRMZM2G574858","No alias","Zea mays","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"HORVU0Hr1G001880.3","No alias","Hordeum vulgare","chromatin remodeling factor *(Rad5)","protein_coding"
"HORVU1Hr1G021540.17","No alias","Hordeum vulgare","ATPase component *(CHR11/CHR17) of ISWI chromatin remodeling complexes","protein_coding"
"HORVU1Hr1G038370.1","No alias","Hordeum vulgare","chromatin remodeling factor *(ATRX)","protein_coding"
"HORVU1Hr1G062970.6","No alias","Hordeum vulgare","regulatory protein *(CLSY3/4) of transacting siRNA pathway","protein_coding"
"HORVU1Hr1G064000.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G072870.1","No alias","Hordeum vulgare","chromatin remodeling factor *(Rad5)","protein_coding"
"HORVU1Hr1G094870.2","No alias","Hordeum vulgare","chromatin remodeling factor *(Mot1) & TATA box-binding protein-associated factor *(MOT1)","protein_coding"
"HORVU2Hr1G014660.2","No alias","Hordeum vulgare","RDR2-polymerase accessory protein *(CLSY1/2)","protein_coding"
"HORVU2Hr1G017680.7","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G022450.1","No alias","Hordeum vulgare","component *(CHR5) of SAGA transcription co-activator complex & CHD1-type chromatin remodeling factor *(CHR5)","protein_coding"
"HORVU2Hr1G025750.2","No alias","Hordeum vulgare","chromatin remodeling factor *(Rad5)","protein_coding"
"HORVU2Hr1G027290.10","No alias","Hordeum vulgare","chromatin remodeling factor *(SMARCAL1)","protein_coding"
"HORVU2Hr1G034200.5","No alias","Hordeum vulgare","chromatin remodeling factor *(SMARCAL1)","protein_coding"
"HORVU2Hr1G034330.2","No alias","Hordeum vulgare","component *(DRD1) of DNA methylation accessory complex","protein_coding"
"HORVU2Hr1G037590.3","No alias","Hordeum vulgare","chromatin remodeling factor *(ERCC6)","protein_coding"
"HORVU2Hr1G047010.2","No alias","Hordeum vulgare","chromatin remodeling factor *(Rad5-like)","protein_coding"
"HORVU2Hr1G107870.9","No alias","Hordeum vulgare","chromatin remodeling factor *(Ris1)","protein_coding"
"HORVU2Hr1G127340.1","No alias","Hordeum vulgare","chromatin remodeling factor *(ERCC6)","protein_coding"
"HORVU3Hr1G012850.1","No alias","Hordeum vulgare","ATPase component *(CHR11/CHR17) of ISWI chromatin remodeling complexes","protein_coding"
"HORVU3Hr1G014660.2","No alias","Hordeum vulgare","chromatin remodeling factor *(ERCC6) & DNA repair protein *(CSB/ERCC6)","protein_coding"
"HORVU3Hr1G054100.8","No alias","Hordeum vulgare","regulatory protein *(CLSY3/4) of transacting siRNA pathway","protein_coding"
"HORVU3Hr1G107920.5","No alias","Hordeum vulgare","chromatin remodeling factor *(SHPRH)","protein_coding"
"HORVU4Hr1G008870.18","No alias","Hordeum vulgare","chromatin remodeling factor *(DDM1)","protein_coding"
"HORVU4Hr1G046140.4","No alias","Hordeum vulgare","ATPase component *(Ino80) of chromatin remodelling complex","protein_coding"
"HORVU4Hr1G074230.18","No alias","Hordeum vulgare","component *(DRD1) of DNA methylation accessory complex","protein_coding"
"HORVU4Hr1G088540.8","No alias","Hordeum vulgare","chromatin remodeling factor *(ALC1)","protein_coding"
"HORVU5Hr1G085320.1","No alias","Hordeum vulgare","component *(DRD1) of DNA methylation accessory complex","protein_coding"
"HORVU5Hr1G086530.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G006050.1","No alias","Hordeum vulgare","SMARCA component *(SYD/BRM/MINU)","protein_coding"
"HORVU6Hr1G021370.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G028700.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G061720.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G061730.1","No alias","Hordeum vulgare","regulatory protein *(CLSY3/4) of transacting siRNA pathway","protein_coding"
"HORVU6Hr1G078680.2","No alias","Hordeum vulgare","chromatin remodeling factor *(RAD54)","protein_coding"
"HORVU6Hr1G083760.1","No alias","Hordeum vulgare","chromatin remodeling factor *(Rad5)","protein_coding"
"HORVU7Hr1G008360.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G041450.33","No alias","Hordeum vulgare","SMARCA component *(SYD/BRM/MINU)","protein_coding"
"HORVU7Hr1G067480.21","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G091400.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G096290.1","No alias","Hordeum vulgare","chromatin remodeling factor *(Rad5)","protein_coding"
"Kfl00004_0120","kfl00004_0120_v1.1","Klebsormidium nitens","(at3g20010 : 239.0) SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G50410.1); Has 24758 Blast hits to 15202 proteins in 1867 species: Archae - 89; Bacteria - 7985; Metazoa - 5530; Fungi - 5269; Plants - 2318; Viruses - 151; Other Eukaryotes - 3416 (source: NCBI BLink). & (reliability: 478.0) &  (original description: no original description)","protein_coding"
"Kfl00004_0380","kfl00004_0380_v1.1","Klebsormidium nitens","(at5g22750 : 151.0) DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer; RAD5; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: embryo, sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT5G43530.1); Has 27107 Blast hits to 18179 proteins in 1771 species: Archae - 108; Bacteria - 7266; Metazoa - 8140; Fungi - 5089; Plants - 2446; Viruses - 173; Other Eukaryotes - 3885 (source: NCBI BLink). & (reliability: 282.0) &  (original description: no original description)","protein_coding"
"Kfl00004_0580","kfl00004_0580_v1.1","Klebsormidium nitens","(at2g13370 : 1061.0) chromatin remodeling 5 (CHR5); FUNCTIONS IN: chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 38529 Blast hits to 28045 proteins in 2467 species: Archae - 189; Bacteria - 9973; Metazoa - 8887; Fungi - 6205; Plants - 2508; Viruses - 447; Other Eukaryotes - 10320 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 416.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 2122.0) &  (original description: no original description)","protein_coding"
"Kfl00005_0350","kfl00005_0350_v1.1","Klebsormidium nitens","(at1g05490 : 104.0) chromatin remodeling 31 (chr31); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 40 (TAIR:AT3G24340.1); Has 38115 Blast hits to 26256 proteins in 2107 species: Archae - 207; Bacteria - 10267; Metazoa - 11226; Fungi - 5719; Plants - 1929; Viruses - 244; Other Eukaryotes - 8523 (source: NCBI BLink). & (reliability: 208.0) &  (original description: no original description)","protein_coding"
"Kfl00010_0280","kfl00010_0280_v1.1","Klebsormidium nitens","(at3g06010 : 961.0) Encodes AtCHR12, a SNF2/Brahma-type chromatin-remodeling protein.  AtCHR12 mediates temporary growth arrest in Arabidopsis upon perceiving environmental stress.; ATCHR12; FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to water deprivation, response to salt stress, response to heat; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT5G19310.1); Has 23556 Blast hits to 19403 proteins in 2220 species: Archae - 141; Bacteria - 6122; Metazoa - 5759; Fungi - 4503; Plants - 1859; Viruses - 268; Other Eukaryotes - 4904 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 486.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1922.0) &  (original description: no original description)","protein_coding"
"Kfl00024_0400","kfl00024_0400_v1.1","Klebsormidium nitens","(at1g02670 : 166.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT1G05120.1); Has 20658 Blast hits to 14879 proteins in 1788 species: Archae - 141; Bacteria - 6646; Metazoa - 3824; Fungi - 4666; Plants - 1875; Viruses - 121; Other Eukaryotes - 3385 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 149.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 332.0) &  (original description: no original description)","protein_coding"
"Kfl00030_0270","kfl00030_0270_v1.1","Klebsormidium nitens","(at5g66750 : 640.0) Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1  shows some resistance to agrobacterium-mediated root transformation.; chromatin remodeling 1 (CHR1); FUNCTIONS IN: helicase activity, ATPase activity; INVOLVED IN: methylation-dependent chromatin silencing, DNA mediated transformation, transposition, RNA-mediated; LOCATED IN: nucleosome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 439.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1280.0) &  (original description: no original description)","protein_coding"
"Kfl00039_0290","kfl00039_0290_v1.1","Klebsormidium nitens","(at3g19210 : 410.0) Encodes RAD54, a member of the SWI2/SNF2 family of DNA-stimulated ATPases.  Functions in DNA repair via homologous recombination.; homolog of RAD54 (RAD54); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: DNA repair, response to gamma radiation, double-strand break repair via homologous recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: style (sensu Poaceae), hydathode, root, petiole; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: switch 2 (TAIR:AT1G03750.1). & (q7g8y3|isw2_orysa : 187.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 820.0) &  (original description: no original description)","protein_coding"
"Kfl00045_0020","kfl00045_0020_v1.1","Klebsormidium nitens","(at2g25170 : 947.0) Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1.  Is an extragenic suppressor of slr2 (SSL2).  Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1.  It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis.; PICKLE (PKL); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF1086 (InterPro:IPR009462), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor, putative (TAIR:AT4G31900.1); Has 20234 Blast hits to 17178 proteins in 1958 species: Archae - 161; Bacteria - 5176; Metazoa - 5098; Fungi - 4334; Plants - 1876; Viruses - 134; Other Eukaryotes - 3455 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 443.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1894.0) &  (original description: no original description)","protein_coding"
"Kfl00046_0110","kfl00046_0110_v1.1","Klebsormidium nitens","(at1g48310 : 451.0) chromatin remodeling factor18 (CHR18); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein (TAIR:AT5G07810.1); Has 16435 Blast hits to 14312 proteins in 1741 species: Archae - 101; Bacteria - 4551; Metazoa - 3441; Fungi - 3785; Plants - 1315; Viruses - 143; Other Eukaryotes - 3099 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 120.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 902.0) &  (original description: no original description)","protein_coding"
"Kfl00055_0090","kfl00055_0090_v1.1","Klebsormidium nitens","(q7g8y3|isw2_orysa : 1337.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (at5g18620 : 1335.0) chromatin remodeling factor17 (CHR17); FUNCTIONS IN: in 7 functions; INVOLVED IN: ATP-dependent chromatin remodeling, chromatin remodeling; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), SLIDE (InterPro:IPR015195), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin-remodeling protein 11 (TAIR:AT3G06400.2); Has 25193 Blast hits to 20371 proteins in 2196 species: Archae - 142; Bacteria - 5974; Metazoa - 6066; Fungi - 4943; Plants - 1903; Viruses - 481; Other Eukaryotes - 5684 (source: NCBI BLink). & (reliability: 2670.0) &  (original description: no original description)","protein_coding"
"Kfl00058_0180","kfl00058_0180_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00058_0320","kfl00058_0320_v1.1","Klebsormidium nitens","(at5g07810 : 429.0) SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), HNH endonuclease (InterPro:IPR002711), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor18 (TAIR:AT1G48310.1); Has 16904 Blast hits to 14939 proteins in 1977 species: Archae - 110; Bacteria - 5677; Metazoa - 3556; Fungi - 3371; Plants - 1315; Viruses - 123; Other Eukaryotes - 2752 (source: NCBI BLink). & (reliability: 858.0) &  (original description: no original description)","protein_coding"
"Kfl00058_0390","kfl00058_0390_v1.1","Klebsormidium nitens","(at5g07810 : 275.0) SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding, endonuclease activity; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), HNH endonuclease (InterPro:IPR002711), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor18 (TAIR:AT1G48310.1); Has 16904 Blast hits to 14939 proteins in 1977 species: Archae - 110; Bacteria - 5677; Metazoa - 3556; Fungi - 3371; Plants - 1315; Viruses - 123; Other Eukaryotes - 2752 (source: NCBI BLink). & (reliability: 550.0) &  (original description: no original description)","protein_coding"
"Kfl00068_0200","kfl00068_0200_v1.1","Klebsormidium nitens","(at2g40770 : 475.0) zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1); Has 20880 Blast hits to 12947 proteins in 1504 species: Archae - 88; Bacteria - 5732; Metazoa - 4955; Fungi - 5171; Plants - 2134; Viruses - 115; Other Eukaryotes - 2685 (source: NCBI BLink). & (reliability: 950.0) &  (original description: no original description)","protein_coding"
"Kfl00069_0180","kfl00069_0180_v1.1","Klebsormidium nitens","(at1g03750 : 654.0) switch 2 (SWI2); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1); Has 20033 Blast hits to 14398 proteins in 1655 species: Archae - 120; Bacteria - 5954; Metazoa - 4199; Fungi - 4321; Plants - 1927; Viruses - 177; Other Eukaryotes - 3335 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 211.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1308.0) &  (original description: no original description)","protein_coding"
"Kfl00112_0020","kfl00112_0020_v1.1","Klebsormidium nitens","(at1g61140 : 583.0) embryo sac development arrest 16 (EDA16); FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; INVOLVED IN: embryo sac development; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G11100.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 98.6) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1166.0) &  (original description: no original description)","protein_coding"
"Kfl00125_0020","kfl00125_0020_v1.1","Klebsormidium nitens","(at2g13370 : 403.0) chromatin remodeling 5 (CHR5); FUNCTIONS IN: chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 38529 Blast hits to 28045 proteins in 2467 species: Archae - 189; Bacteria - 9973; Metazoa - 8887; Fungi - 6205; Plants - 2508; Viruses - 447; Other Eukaryotes - 10320 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 384.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 776.0) &  (original description: no original description)","protein_coding"
"Kfl00130_0050","kfl00130_0050_v1.1","Klebsormidium nitens","(at3g57300 : 966.0) Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family.  Functions as a positive regulator of DNA homologous recombination (HR).  In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type.  Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration.  INO80 was also shown to regulate a subset of the Arabidopsis transcriptome.; INO80 ortholog (INO80); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: somatic cell DNA recombination, positive regulation of DNA repair, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA binding domain, INO80 (InterPro:IPR020838), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein (TAIR:AT3G12810.1). & (q7g8y3|isw2_orysa : 274.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1932.0) &  (original description: no original description)","protein_coding"
"Kfl00142_0080","kfl00142_0080_v1.1","Klebsormidium nitens","(q7g8y3|isw2_orysa : 220.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (at3g06400 : 218.0) Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature.; chromatin-remodeling protein 11 (CHR11); FUNCTIONS IN: in 7 functions; INVOLVED IN: cell growth, embryo sac development; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), SLIDE (InterPro:IPR015195), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2). & (reliability: 410.0) &  (original description: no original description)","protein_coding"
"Kfl00147_0050","kfl00147_0050_v1.1","Klebsormidium nitens","(at1g08600 : 369.0) ATRX; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1). & (gnl|cdd|68872 : 195.0) no description available & (q7g8y3|isw2_orysa : 102.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (gnl|cdd|39774 : 94.4) no description available & (reliability: 738.0) &  (original description: no original description)","protein_coding"
"Kfl00148_0240","kfl00148_0240_v1.1","Klebsormidium nitens","(at5g63950 : 571.0) chromatin remodeling 24 (CHR24); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 8 (TAIR:AT2G18760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 217.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1142.0) &  (original description: no original description)","protein_coding"
"Kfl00148_0270","kfl00148_0270_v1.1","Klebsormidium nitens","(at2g46020 : 1119.0) Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.; BRAHMA (BRM); FUNCTIONS IN: helicase activity, transcription regulator activity, DNA binding, ATP binding; INVOLVED IN: ATP-dependent chromatin remodeling, organ boundary specification between lateral organs and the meristem, regulation of gene expression, epigenetic; LOCATED IN: cytosol, nucleus, chromatin remodeling complex; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Bromodomain (InterPro:IPR001487), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G28290.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 365.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 2238.0) &  (original description: no original description)","protein_coding"
"Kfl00155_0200","kfl00155_0200_v1.1","Klebsormidium nitens","(at5g22750 : 149.0) DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer; RAD5; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: embryo, sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT5G43530.1); Has 27107 Blast hits to 18179 proteins in 1771 species: Archae - 108; Bacteria - 7266; Metazoa - 8140; Fungi - 5089; Plants - 2446; Viruses - 173; Other Eukaryotes - 3885 (source: NCBI BLink). & (reliability: 284.0) &  (original description: no original description)","protein_coding"
"Kfl00200_0040","kfl00200_0040_v1.1","Klebsormidium nitens","(at5g22750 : 253.0) DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer; RAD5; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: embryo, sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT5G43530.1); Has 27107 Blast hits to 18179 proteins in 1771 species: Archae - 108; Bacteria - 7266; Metazoa - 8140; Fungi - 5089; Plants - 2446; Viruses - 173; Other Eukaryotes - 3885 (source: NCBI BLink). & (reliability: 468.0) &  (original description: no original description)","protein_coding"
"Kfl00210_0140","kfl00210_0140_v1.1","Klebsormidium nitens","(at3g12810 : 1028.0) Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6).; PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (PIE1); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: SWI/SNF complex, cell wall, chromatin remodeling complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: HSA (InterPro:IPR006562), HAS subgroup (InterPro:IPR013999), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), SNF2-related (InterPro:IPR000330), MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: INO80 ortholog (TAIR:AT3G57300.1); Has 42311 Blast hits to 26312 proteins in 2357 species: Archae - 246; Bacteria - 10217; Metazoa - 11172; Fungi - 7336; Plants - 2916; Viruses - 500; Other Eukaryotes - 9924 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 293.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 2056.0) &  (original description: no original description)","protein_coding"
"Kfl00223_0110","kfl00223_0110_v1.1","Klebsormidium nitens","(at2g44980 : 444.0) SNF2 domain-containing protein / helicase domain-containing protein; FUNCTIONS IN: transcription regulator activity, helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 17488 Blast hits to 15031 proteins in 1958 species: Archae - 101; Bacteria - 5047; Metazoa - 3666; Fungi - 3968; Plants - 1607; Viruses - 135; Other Eukaryotes - 2964 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 280.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 888.0) &  (original description: no original description)","protein_coding"
"Kfl00278_0040","kfl00278_0040_v1.1","Klebsormidium nitens","(at5g22750 : 995.0) DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer; RAD5; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: embryo, sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT5G43530.1); Has 27107 Blast hits to 18179 proteins in 1771 species: Archae - 108; Bacteria - 7266; Metazoa - 8140; Fungi - 5089; Plants - 2446; Viruses - 173; Other Eukaryotes - 3885 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 94.4) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1808.0) &  (original description: no original description)","protein_coding"
"Kfl00288_0140","kfl00288_0140_v1.1","Klebsormidium nitens","(at5g05130 : 600.0) DNA/RNA helicase protein; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 114.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1200.0) &  (original description: no original description)","protein_coding"
"Kfl00291_0150","kfl00291_0150_v1.1","Klebsormidium nitens","(at2g02090 : 634.0) ETL1; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 5 (TAIR:AT2G13370.1); Has 19948 Blast hits to 16374 proteins in 2059 species: Archae - 127; Bacteria - 6550; Metazoa - 3755; Fungi - 4012; Plants - 1782; Viruses - 219; Other Eukaryotes - 3503 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 317.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1268.0) &  (original description: no original description)","protein_coding"
"Kfl00316_0020","kfl00316_0020_v1.1","Klebsormidium nitens","(at1g05120 : 616.0) Helicase protein with RING/U-box domain; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G02670.1); Has 29218 Blast hits to 14448 proteins in 1607 species: Archae - 124; Bacteria - 8622; Metazoa - 6656; Fungi - 6694; Plants - 2674; Viruses - 189; Other Eukaryotes - 4259 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 101.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1232.0) &  (original description: no original description)","protein_coding"
"Kfl00339_0030","kfl00339_0030_v1.1","Klebsormidium nitens","(at3g19210 : 969.0) Encodes RAD54, a member of the SWI2/SNF2 family of DNA-stimulated ATPases.  Functions in DNA repair via homologous recombination.; homolog of RAD54 (RAD54); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: DNA repair, response to gamma radiation, double-strand break repair via homologous recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: style (sensu Poaceae), hydathode, root, petiole; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: switch 2 (TAIR:AT1G03750.1). & (q7g8y3|isw2_orysa : 216.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1938.0) &  (original description: no original description)","protein_coding"
"Kfl00437_0050","kfl00437_0050_v1.1","Klebsormidium nitens","(at2g18760 : 875.0) chromatin remodeling 8 (CHR8); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: DNA repair, response to gamma radiation; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 24 (TAIR:AT5G63950.1); Has 17230 Blast hits to 14463 proteins in 1653 species: Archae - 99; Bacteria - 4180; Metazoa - 3846; Fungi - 4219; Plants - 1677; Viruses - 118; Other Eukaryotes - 3091 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 270.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1750.0) &  (original description: no original description)","protein_coding"
"Kfl00490_0080","kfl00490_0080_v1.1","Klebsormidium nitens","(at3g54460 : 639.0) SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), SNF2-related (InterPro:IPR000330), F-box domain, Skp2-like (InterPro:IPR022364), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 15028 Blast hits to 11196 proteins in 1367 species: Archae - 59; Bacteria - 4030; Metazoa - 3400; Fungi - 4173; Plants - 1458; Viruses - 121; Other Eukaryotes - 1787 (source: NCBI BLink). & (reliability: 1278.0) &  (original description: no original description)","protein_coding"
"Kfl00546_0070","kfl00546_0070_v1.1","Klebsormidium nitens","(at1g05490 : 115.0) chromatin remodeling 31 (chr31); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 40 (TAIR:AT3G24340.1); Has 38115 Blast hits to 26256 proteins in 2107 species: Archae - 207; Bacteria - 10267; Metazoa - 11226; Fungi - 5719; Plants - 1929; Viruses - 244; Other Eukaryotes - 8523 (source: NCBI BLink). & (reliability: 224.0) &  (original description: no original description)","protein_coding"
"Kfl00590_0040","kfl00590_0040_v1.1","Klebsormidium nitens","(at2g28290 : 922.0) Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral  homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates  flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation.  Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms  differs in juvenile and in adult tissues. The C-terminal domain is not required for activity.; SPLAYED (SYD); CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1); Has 38598 Blast hits to 29293 proteins in 2471 species: Archae - 323; Bacteria - 8462; Metazoa - 11641; Fungi - 6683; Plants - 2383; Viruses - 257; Other Eukaryotes - 8849 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 428.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1844.0) &  (original description: no original description)","protein_coding"
"Kfl00649_0030","kfl00649_0030_v1.1","Klebsormidium nitens","(at1g05490 : 164.0) chromatin remodeling 31 (chr31); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 40 (TAIR:AT3G24340.1); Has 38115 Blast hits to 26256 proteins in 2107 species: Archae - 207; Bacteria - 10267; Metazoa - 11226; Fungi - 5719; Plants - 1929; Viruses - 244; Other Eukaryotes - 8523 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 88.6) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 328.0) &  (original description: no original description)","protein_coding"
"Kfl00702_0030","kfl00702_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00738_0060","kfl00738_0060_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00995_0010","kfl00995_0010_v1.1","Klebsormidium nitens","(at3g54280 : 889.0) ROOT GROWTH DEFECTIVE 3 (RGD3); FUNCTIONS IN: helicase activity, binding, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), DEAD-like helicase, N-terminal (InterPro:IPR014001), Armadillo-type fold (InterPro:IPR016024), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1). & (q7g8y3|isw2_orysa : 226.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1778.0) &  (original description: no original description)","protein_coding"
"LOC_Os01g01312","No alias","Oryza sativa","retrotransposon protein, putative, Ty1-copia subclass, expressed","protein_coding"
"LOC_Os01g27040","No alias","Oryza sativa","chromatin-remodeling complex ATPase chain, putative, expressed","protein_coding"
"LOC_Os01g44990","No alias","Oryza sativa","ercc6 protein, putative, expressed","protein_coding"
"LOC_Os01g57110","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding"
"LOC_Os01g65850","No alias","Oryza sativa","CHD3-type chromatin-remodeling factor PICKLE, putative, expressed","protein_coding"
"LOC_Os01g72310","No alias","Oryza sativa","OsFBO7 - F-box and other domain containing protein, expressed","protein_coding"
"LOC_Os02g02050","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding"
"LOC_Os02g02290","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding"
"LOC_Os02g06592","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding"
"LOC_Os02g32570","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding"
"LOC_Os02g43460","No alias","Oryza sativa","required to maintain repression 1, putative, expressed","protein_coding"
"LOC_Os02g52510","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding"
"LOC_Os03g01200","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding"
"LOC_Os03g06920","No alias","Oryza sativa","DRD1, putative, expressed","protein_coding"
"LOC_Os03g22900","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding"
"LOC_Os03g51230","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding"
"LOC_Os04g09800","No alias","Oryza sativa","SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative, expressed","protein_coding"
"LOC_Os04g47830","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding"
"LOC_Os04g53720","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding"
"LOC_Os04g59620","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding"
"LOC_Os04g59624","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding"
"LOC_Os05g05230","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os05g05780","No alias","Oryza sativa","chromatin-remodeling complex ATPase chain, putative, expressed","protein_coding"
"LOC_Os05g15890","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding"
"LOC_Os05g32610","No alias","Oryza sativa","required to maintain repression 1, putative, expressed","protein_coding"
"LOC_Os06g01320","No alias","Oryza sativa","chromo domain containing protein, expressed","protein_coding"
"LOC_Os06g08480","No alias","Oryza sativa","CHD3-type chromatin-remodeling factor PICKLE, putative, expressed","protein_coding"
"LOC_Os06g14440","No alias","Oryza sativa","DRD1, putative, expressed","protein_coding"
"LOC_Os07g25390","No alias","Oryza sativa","DRD1, putative, expressed","protein_coding"
"LOC_Os07g31450","No alias","Oryza sativa","CHR4/MI-2-LIKE, putative, expressed","protein_coding"
"LOC_Os07g40730","No alias","Oryza sativa","SNF2 domain-containing protein, putative, expressed","protein_coding"
"LOC_Os07g44210","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding"
"LOC_Os07g44800","No alias","Oryza sativa","SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A, putative, expressed","protein_coding"
"LOC_Os07g46590","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding"
"LOC_Os07g49210","No alias","Oryza sativa","helicase conserved C-terminal domain containing protein, expressed","protein_coding"
"LOC_Os08g08220","No alias","Oryza sativa","EDA16, putative, expressed","protein_coding"
"LOC_Os08g14610","No alias","Oryza sativa","DRD1, putative, expressed","protein_coding"
"LOC_Os09g27060","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding"
"LOC_Os10g31970","No alias","Oryza sativa","SNF2 family N-terminal domain containing protein, expressed","protein_coding"
"LOC_Os10g41620","No alias","Oryza sativa","retrotransposon protein, putative, unclassified, expressed","protein_coding"
"MA_104034g0010","No alias","Picea abies","(at5g66750 : 811.0) Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1  shows some resistance to agrobacterium-mediated root transformation.; chromatin remodeling 1 (CHR1); FUNCTIONS IN: helicase activity, ATPase activity; INVOLVED IN: methylation-dependent chromatin silencing, DNA mediated transformation, transposition, RNA-mediated; LOCATED IN: nucleosome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 433.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1622.0) &  (original description: no original description)","protein_coding"
"MA_10427682g0010","No alias","Picea abies","(at5g44800 : 274.0) chromatin remodeling 4 (CHR4); FUNCTIONS IN: in 6 functions; INVOLVED IN: chromatin assembly or disassembly, regulation of transcription; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Homeodomain-related (InterPro:IPR012287), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 35726 Blast hits to 27895 proteins in 2283 species: Archae - 135; Bacteria - 6476; Metazoa - 12546; Fungi - 6155; Plants - 3074; Viruses - 328; Other Eukaryotes - 7012 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 172.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 548.0) &  (original description: no original description)","protein_coding"
"MA_10429361g0010","No alias","Picea abies","(at2g13370 : 1371.0) chromatin remodeling 5 (CHR5); FUNCTIONS IN: chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 38529 Blast hits to 28045 proteins in 2467 species: Archae - 189; Bacteria - 9973; Metazoa - 8887; Fungi - 6205; Plants - 2508; Viruses - 447; Other Eukaryotes - 10320 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 451.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 2742.0) &  (original description: no original description)","protein_coding"
"MA_10430482g0010","No alias","Picea abies","(at3g54280 : 297.0) ROOT GROWTH DEFECTIVE 3 (RGD3); FUNCTIONS IN: helicase activity, binding, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), DEAD-like helicase, N-terminal (InterPro:IPR014001), Armadillo-type fold (InterPro:IPR016024), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1). & (reliability: 594.0) &  (original description: no original description)","protein_coding"
"MA_10434222g0010","No alias","Picea abies","(at5g05130 : 808.0) DNA/RNA helicase protein; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 109.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1616.0) &  (original description: no original description)","protein_coding"
"MA_109115g0010","No alias","Picea abies","(at2g16390 : 343.0) Putative chromatin remodeling protein, member of a plant-specific subfamily of SWI2/SNF2-like proteins.  Mutations nearly eliminate non-CpG methylation at a target promoter but do not affect rDNA or centromere methylation.  Cooperates with PolIVb to facilitate RNA-directed de novo methylation and silencing of homologous DNA.  Endogenous targets include intergenic regions near retrotransposon LTRs or short RNA encoding sequences that might epigenetically regulate adjacent genes.  May be used to establish a basal yet reversible level of silencing in euchromatin.; DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1 (DRD1); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: DNA methylation, production of siRNA involved in RNA interference; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 34 (TAIR:AT2G21450.1); Has 13448 Blast hits to 11886 proteins in 1506 species: Archae - 91; Bacteria - 3564; Metazoa - 3285; Fungi - 3284; Plants - 1229; Viruses - 105; Other Eukaryotes - 1890 (source: NCBI BLink). & (reliability: 686.0) &  (original description: no original description)","protein_coding"
"MA_111652g0010","No alias","Picea abies","(at5g22750 : 1161.0) DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer; RAD5; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: embryo, sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT5G43530.1); Has 27107 Blast hits to 18179 proteins in 1771 species: Archae - 108; Bacteria - 7266; Metazoa - 8140; Fungi - 5089; Plants - 2446; Viruses - 173; Other Eukaryotes - 3885 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 99.4) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 2118.0) &  (original description: no original description)","protein_coding"
"MA_15897g0010","No alias","Picea abies","(at1g05490 : 435.0) chromatin remodeling 31 (chr31); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 40 (TAIR:AT3G24340.1); Has 38115 Blast hits to 26256 proteins in 2107 species: Archae - 207; Bacteria - 10267; Metazoa - 11226; Fungi - 5719; Plants - 1929; Viruses - 244; Other Eukaryotes - 8523 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 92.4) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 838.0) &  (original description: no original description)","protein_coding"
"MA_18372g0010","No alias","Picea abies","(at5g63950 : 326.0) chromatin remodeling 24 (CHR24); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 8 (TAIR:AT2G18760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 103.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 652.0) &  (original description: no original description)","protein_coding"
"MA_3312g0010","No alias","Picea abies","(at3g57300 : 1489.0) Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family.  Functions as a positive regulator of DNA homologous recombination (HR).  In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type.  Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration.  INO80 was also shown to regulate a subset of the Arabidopsis transcriptome.; INO80 ortholog (INO80); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: somatic cell DNA recombination, positive regulation of DNA repair, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA binding domain, INO80 (InterPro:IPR020838), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein (TAIR:AT3G12810.1). & (q7g8y3|isw2_orysa : 237.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 2978.0) &  (original description: no original description)","protein_coding"
"MA_36244g0010","No alias","Picea abies","(at3g42670 : 469.0) Encodes a nuclear localized SNF domain containing protein involved in RNA silencing. Mutants were identified in a screen for defects in the spread of RNA silencing. CLSY1 may affect production of dsRNA from the locus to be silenced.; chromatin remodeling 38 (CHR38); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: gene silencing by RNA; LOCATED IN: nucleolus; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 42 (TAIR:AT5G20420.1); Has 13835 Blast hits to 12445 proteins in 1668 species: Archae - 89; Bacteria - 4181; Metazoa - 3164; Fungi - 3150; Plants - 1308; Viruses - 62; Other Eukaryotes - 1881 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 91.7) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 938.0) &  (original description: no original description)","protein_coding"
"MA_42020g0010","No alias","Picea abies","(at1g05120 : 343.0) Helicase protein with RING/U-box domain; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G02670.1); Has 29218 Blast hits to 14448 proteins in 1607 species: Archae - 124; Bacteria - 8622; Metazoa - 6656; Fungi - 6694; Plants - 2674; Viruses - 189; Other Eukaryotes - 4259 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 95.9) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 686.0) &  (original description: no original description)","protein_coding"
"MA_42406g0010","No alias","Picea abies","(at5g66750 : 700.0) Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1  shows some resistance to agrobacterium-mediated root transformation.; chromatin remodeling 1 (CHR1); FUNCTIONS IN: helicase activity, ATPase activity; INVOLVED IN: methylation-dependent chromatin silencing, DNA mediated transformation, transposition, RNA-mediated; LOCATED IN: nucleosome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 376.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1400.0) &  (original description: no original description)","protein_coding"
"MA_55086g0010","No alias","Picea abies","(at1g11100 : 167.0) SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1). & (reliability: 334.0) &  (original description: no original description)","protein_coding"
"MA_64225g0010","No alias","Picea abies","(at3g54460 : 1196.0) SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), SNF2-related (InterPro:IPR000330), F-box domain, Skp2-like (InterPro:IPR022364), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 15028 Blast hits to 11196 proteins in 1367 species: Archae - 59; Bacteria - 4030; Metazoa - 3400; Fungi - 4173; Plants - 1458; Viruses - 121; Other Eukaryotes - 1787 (source: NCBI BLink). & (reliability: 2392.0) &  (original description: no original description)","protein_coding"
"MA_8000029g0010","No alias","Picea abies"," no hits & (original description: no original description)","protein_coding"
"Mp1g02820.1","No alias","Marchantia polymorpha","chromatin remodeling factor (SMARCAL1)","protein_coding"
"Mp1g05480.1","No alias","Marchantia polymorpha","chromatin remodeling factor (Chd1). component CHR5 of SAGA transcription co-activator complex","protein_coding"
"Mp1g06410.1","No alias","Marchantia polymorpha","Protein CHROMATIN REMODELING 35 OS=Arabidopsis thaliana (sp|q9siw2|chr35_arath : 328.0)","protein_coding"
"Mp1g07380.1","No alias","Marchantia polymorpha","CHD3-type chromatin-remodeling factor CHR7 OS=Arabidopsis thaliana (sp|f4jtf6|chr7_arath : 213.0)","protein_coding"
"Mp1g07390.1","No alias","Marchantia polymorpha","Protein CHROMATIN REMODELING 4 OS=Arabidopsis thaliana (sp|f4kbp5|chr4_arath : 146.0)","protein_coding"
"Mp1g08410.1","No alias","Marchantia polymorpha","chromatin remodeling factor (ERCC6). DNA repair protein (CSB)","protein_coding"
"Mp1g11040.1","No alias","Marchantia polymorpha","SNF2 domain-containing protein CLASSY 2 OS=Arabidopsis thaliana (sp|f4k493|clsy2_arath : 365.0)","protein_coding"
"Mp1g17010.1","No alias","Marchantia polymorpha","chromatin remodeling factor (Snf2)","protein_coding"
"Mp1g18560.1","No alias","Marchantia polymorpha","CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana (sp|q9s775|pkl_arath : 432.0)","protein_coding"
"Mp1g26000.1","No alias","Marchantia polymorpha","chromatin remodeling factor (Rad5)","protein_coding"
"Mp1g29760.1","No alias","Marchantia polymorpha","chromatin remodeling factor (ERCC6)","protein_coding"
"Mp2g05860.1","No alias","Marchantia polymorpha","chromatin remodeling factor (SHPRH)","protein_coding"
"Mp2g14200.1","No alias","Marchantia polymorpha","chromatin remodeling factor (ERCC6)","protein_coding"
"Mp2g26680.1","No alias","Marchantia polymorpha","CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana (sp|q9s775|pkl_arath : 424.0)","protein_coding"
"Mp3g15030.1","No alias","Marchantia polymorpha","chromatin remodeling factor (Iswi)","protein_coding"
"Mp3g19430.1","No alias","Marchantia polymorpha","chromatin remodeling factor (Alc)","protein_coding"
"Mp4g00040.1","No alias","Marchantia polymorpha","chromatin remodeling factor (Chd3/Mi-2)","protein_coding"
"Mp4g09280.1","No alias","Marchantia polymorpha","Protein CHROMATIN REMODELING 35 OS=Arabidopsis thaliana (sp|q9siw2|chr35_arath : 282.0)","protein_coding"
"Mp4g12200.1","No alias","Marchantia polymorpha","chromatin remodeling factor (DDM1)","protein_coding"
"Mp4g19670.1","No alias","Marchantia polymorpha","Protein CHROMATIN REMODELING 35 OS=Arabidopsis thaliana (sp|q9siw2|chr35_arath : 324.0)","protein_coding"
"Mp5g06580.2","No alias","Marchantia polymorpha","chromatin remodeling factor (Snf2)","protein_coding"
"Mp5g21000.1","No alias","Marchantia polymorpha","chromatin remodeling factor (ATRX)","protein_coding"
"Mp5g24460.1","No alias","Marchantia polymorpha","chromatin remodeling factor (Chd3/Mi-2)","protein_coding"
"Mp6g06120.1","No alias","Marchantia polymorpha","chromatin remodeling factor (Rad54)","protein_coding"
"Mp6g12400.1","No alias","Marchantia polymorpha","chromatin remodeling factor (SHPRH)","protein_coding"
"Mp6g18490.1","No alias","Marchantia polymorpha","chromatin remodeling factor (Mot1). TATA box-binding protein-associated factor (MOT1)","protein_coding"
"Mp7g11900.1","No alias","Marchantia polymorpha","chromatin remodeling factor (Rad5-like)","protein_coding"
"Mp7g15670.1","No alias","Marchantia polymorpha","ATPase component PIE1 of SWR1 chromatin remodeling complex","protein_coding"
"Mp8g00130.1","No alias","Marchantia polymorpha","ATPase component Ino80 of chromatin remodelling complex","protein_coding"
"Mp8g05230.1","No alias","Marchantia polymorpha","chromatin remodeling factor (Ris1)","protein_coding"
"Mp8g08450.1","No alias","Marchantia polymorpha","chromatin remodeling factor (Etl1)","protein_coding"
"Mp8g17660.1","No alias","Marchantia polymorpha","chromatin remodeling factor (Snf2)","protein_coding"
"Potri.001G123400","No alias","Populus trichocarpa","chromatin remodeling 4","protein_coding"
"Potri.001G207700","No alias","Populus trichocarpa","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Potri.001G253400","No alias","Populus trichocarpa","chromatin remodeling 5","protein_coding"
"Potri.002G160900","No alias","Populus trichocarpa","transcription regulatory protein SNF2, putative","protein_coding"
"Potri.003G022100","No alias","Populus trichocarpa","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Potri.003G083400","No alias","Populus trichocarpa","Helicase protein with RING/U-box domain","protein_coding"
"Potri.003G110100","No alias","Populus trichocarpa","chromatin remodeling 4","protein_coding"
"Potri.003G197700","No alias","Populus trichocarpa","SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein","protein_coding"
"Potri.004G037700","No alias","Populus trichocarpa","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"Potri.004G141500","No alias","Populus trichocarpa","homolog of RAD54","protein_coding"
"Potri.004G159000","No alias","Populus trichocarpa","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Potri.004G159100","No alias","Populus trichocarpa","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Potri.004G189400","No alias","Populus trichocarpa","DNA/RNA helicase protein","protein_coding"
"Potri.005G066600","No alias","Populus trichocarpa","chromatin remodeling 24","protein_coding"
"Potri.005G226500","No alias","Populus trichocarpa","chromatin remodeling 8","protein_coding"
"Potri.006G035700","No alias","Populus trichocarpa","DNA/RNA helicase protein","protein_coding"
"Potri.006G047100","No alias","Populus trichocarpa","INO80 ortholog","protein_coding"
"Potri.006G262200","No alias","Populus trichocarpa","chromatin remodeling factor CHD3 (PICKLE)","protein_coding"
"Potri.007G000700","No alias","Populus trichocarpa","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"Potri.007G026700","No alias","Populus trichocarpa","chromatin remodeling 1","protein_coding"
"Potri.007G102800","No alias","Populus trichocarpa","chromatin remodeling 24","protein_coding"
"Potri.008G073500","No alias","Populus trichocarpa","chromatin remodeling 42","protein_coding"
"Potri.008G149900","No alias","Populus trichocarpa","Homeotic gene regulator","protein_coding"
"Potri.008G195900","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.008G205600","No alias","Populus trichocarpa","chromatin remodeling factor17","protein_coding"
"Potri.009G047800","No alias","Populus trichocarpa","chromatin remodeling 5","protein_coding"
"Potri.009G120700","No alias","Populus trichocarpa","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Potri.010G003300","No alias","Populus trichocarpa","chromatin remodeling factor18","protein_coding"
"Potri.010G019150","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.010G019800","No alias","Populus trichocarpa","chromatin-remodeling protein 11","protein_coding"
"Potri.010G021400","No alias","Populus trichocarpa","chromatin-remodeling protein 11","protein_coding"
"Potri.010G073801","No alias","Populus trichocarpa","Helicase protein with RING/U-box domain","protein_coding"
"Potri.010G091200","No alias","Populus trichocarpa","Homeotic gene regulator","protein_coding"
"Potri.010G099000","No alias","Populus trichocarpa","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Potri.010G183832","No alias","Populus trichocarpa","chromatin remodeling 38","protein_coding"
"Potri.011G046400","No alias","Populus trichocarpa","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related","protein_coding"
"Potri.012G057600","No alias","Populus trichocarpa","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Potri.012G067000","No alias","Populus trichocarpa","SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein","protein_coding"
"Potri.013G006000","No alias","Populus trichocarpa","ATP-dependent helicase family protein","protein_coding"
"Potri.013G048532","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.013G048650","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.013G068400","No alias","Populus trichocarpa","DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases","protein_coding"
"Potri.014G050200","No alias","Populus trichocarpa","chromatin remodeling 31","protein_coding"
"Potri.014G056700","No alias","Populus trichocarpa","SNF2 domain-containing protein / helicase domain-containing protein","protein_coding"
"Potri.014G086500","No alias","Populus trichocarpa","transcription regulatory protein SNF2, putative","protein_coding"
"Potri.014G154600","No alias","Populus trichocarpa","Helicase protein with RING/U-box domain","protein_coding"
"Potri.016G033500","No alias","Populus trichocarpa","DNA/RNA helicase protein","protein_coding"
"Potri.016G033600","No alias","Populus trichocarpa","DNA/RNA helicase protein","protein_coding"
"Potri.016G033700","No alias","Populus trichocarpa","DNA/RNA helicase protein","protein_coding"
"Potri.016G033800","No alias","Populus trichocarpa","DNA/RNA helicase protein","protein_coding"
"Potri.016G033900","No alias","Populus trichocarpa","DNA/RNA helicase protein","protein_coding"
"Potri.016G034000","No alias","Populus trichocarpa","DNA/RNA helicase protein","protein_coding"
"Potri.016G043500","No alias","Populus trichocarpa","INO80 ortholog","protein_coding"
"Potri.017G011301","No alias","Populus trichocarpa","switch 2","protein_coding"
"Potri.017G012400","No alias","Populus trichocarpa","switch 2","protein_coding"
"Potri.018G021100","No alias","Populus trichocarpa","chromatin remodeling factor CHD3 (PICKLE)","protein_coding"
"Potri.019G021500","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.019G060900","No alias","Populus trichocarpa","zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding","protein_coding"
"Potri.019G129900","No alias","Populus trichocarpa","chromatin remodeling 1","protein_coding"
"Pp1s123_125V6","No alias","Physcomitrella patens","snf2 super family","protein_coding"
"Pp1s132_19V6","No alias","Physcomitrella patens","chromatin remodeling complex subunit","protein_coding"
"Pp1s136_72V6","No alias","Physcomitrella patens","swi snf matrix actin dependent regulator of subfamily member 1","protein_coding"
"Pp1s14_367V6","No alias","Physcomitrella patens","dna repair helicase","protein_coding"
"Pp1s158_37V6","No alias","Physcomitrella patens","snf2 super family","protein_coding"
"Pp1s15_94V6","No alias","Physcomitrella patens","chromatin remodeling complex subunit","protein_coding"
"Pp1s166_101V6","No alias","Physcomitrella patens","chromodomain helicase dna binding protein 6","protein_coding"
"Pp1s168_33V6","No alias","Physcomitrella patens","chromatin remodeling complex subunit","protein_coding"
"Pp1s173_140V6","No alias","Physcomitrella patens","snf2 domain-containing expressed","protein_coding"
"Pp1s197_19V6","No alias","Physcomitrella patens","chromatin remodelling complex atpase chain isw-","protein_coding"
"Pp1s212_41V6","No alias","Physcomitrella patens","dna repair and recombination protein rad54b (rad54 homolog b)","protein_coding"
"Pp1s223_99V6","No alias","Physcomitrella patens","chromodomain helicase dna binding protein 5","protein_coding"
"Pp1s235_76V6","No alias","Physcomitrella patens","chromatin remodeling complex subunit","protein_coding"
"Pp1s236_78V6","No alias","Physcomitrella patens","dna repair and recombination protein","protein_coding"
"Pp1s245_50V6","No alias","Physcomitrella patens","chromodomain helicase dna binding protein 3","protein_coding"
"Pp1s256_75V6","No alias","Physcomitrella patens","snf2 super family","protein_coding"
"Pp1s259_46V6","No alias","Physcomitrella patens","snf2 super family","protein_coding"
"Pp1s25_252V6","No alias","Physcomitrella patens","snf2 super family","protein_coding"
"Pp1s279_74V6","No alias","Physcomitrella patens","snf2 super family","protein_coding"
"Pp1s28_129V6","No alias","Physcomitrella patens","chromatin remodeling complex subunit","protein_coding"
"Pp1s291_20V6","No alias","Physcomitrella patens","chromodomain-helicase-dna-binding protein","protein_coding"
"Pp1s293_34V6","No alias","Physcomitrella patens","chromodomain helicase dna binding protein 1-like","protein_coding"
"Pp1s304_7V6","No alias","Physcomitrella patens","chromatin remodeling complex subunit","protein_coding"
"Pp1s317_10V6","No alias","Physcomitrella patens","chromodomain-helicase-dna-binding protein","protein_coding"
"Pp1s338_32V6","No alias","Physcomitrella patens","chromodomain helicase dna binding protein 3","protein_coding"
"Pp1s33_329V6","No alias","Physcomitrella patens","chromatin remodeling complex subunit","protein_coding"
"Pp1s341_67V6","No alias","Physcomitrella patens","dna repair and recombination protein","protein_coding"
"Pp1s34_212V6","No alias","Physcomitrella patens","chromatin remodeling complex subunit","protein_coding"
"Pp1s34_370V6","No alias","Physcomitrella patens","snf2 domain-containing expressed","protein_coding"
"Pp1s360_39V6","No alias","Physcomitrella patens","syd atpase chromatin binding","protein_coding"
"Pp1s3_639V6","No alias","Physcomitrella patens","chromatin remodeling complex subunit","protein_coding"
"Pp1s41_174V6","No alias","Physcomitrella patens","dna repair helicase","protein_coding"
"Pp1s452_20V6","No alias","Physcomitrella patens","helicase swr1","protein_coding"
"Pp1s45_2V6","No alias","Physcomitrella patens","chromatin remodeling complex subunit","protein_coding"
"Pp1s47_44V6","No alias","Physcomitrella patens","chromatin remodeling complex subunit","protein_coding"
"Pp1s54_314V6","No alias","Physcomitrella patens","snf2-family atp dependent chromatin remodeling factor snf21","protein_coding"
"Pp1s55_124V6","No alias","Physcomitrella patens","chromatin remodeling complex subunit","protein_coding"
"Pp1s65_183V6","No alias","Physcomitrella patens","chromatin remodeling complex subunit","protein_coding"
"Pp1s66_144V6","No alias","Physcomitrella patens","dna repair protein rhp26","protein_coding"
"Pp1s73_179V6","No alias","Physcomitrella patens","helicase-like transcription factor","protein_coding"
"Pp1s74_188V6","No alias","Physcomitrella patens","chromatin remodeling complex subunit","protein_coding"
"Pp1s7_128V6","No alias","Physcomitrella patens","chromatin remodeling complex subunit","protein_coding"
"Pp1s84_259V6","No alias","Physcomitrella patens","chromatin remodeling complex subunit","protein_coding"
"Pp1s86_142V6","No alias","Physcomitrella patens","snf2 super family","protein_coding"
"Pp1s93_123V6","No alias","Physcomitrella patens","chromodomain-helicase-dna-binding protein","protein_coding"
"PSME_00000065-RA","No alias","Pseudotsuga menziesii","(at5g66750 : 813.0) Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1  shows some resistance to agrobacterium-mediated root transformation.; chromatin remodeling 1 (CHR1); FUNCTIONS IN: helicase activity, ATPase activity; INVOLVED IN: methylation-dependent chromatin silencing, DNA mediated transformation, transposition, RNA-mediated; LOCATED IN: nucleosome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 432.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1626.0) &  (original description: no original description)","protein_coding"
"PSME_00000156-RA","No alias","Pseudotsuga menziesii","(at3g12810 : 1465.0) Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6).; PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (PIE1); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: SWI/SNF complex, cell wall, chromatin remodeling complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: HSA (InterPro:IPR006562), HAS subgroup (InterPro:IPR013999), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), SNF2-related (InterPro:IPR000330), MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: INO80 ortholog (TAIR:AT3G57300.1); Has 42311 Blast hits to 26312 proteins in 2357 species: Archae - 246; Bacteria - 10217; Metazoa - 11172; Fungi - 7336; Plants - 2916; Viruses - 500; Other Eukaryotes - 9924 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 275.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 2930.0) &  (original description: no original description)","protein_coding"
"PSME_00001593-RA","No alias","Pseudotsuga menziesii","(at2g13370 : 1311.0) chromatin remodeling 5 (CHR5); FUNCTIONS IN: chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 38529 Blast hits to 28045 proteins in 2467 species: Archae - 189; Bacteria - 9973; Metazoa - 8887; Fungi - 6205; Plants - 2508; Viruses - 447; Other Eukaryotes - 10320 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 454.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 2622.0) &  (original description: no original description)","protein_coding"
"PSME_00001767-RA","No alias","Pseudotsuga menziesii","(at5g66750 : 797.0) Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1  shows some resistance to agrobacterium-mediated root transformation.; chromatin remodeling 1 (CHR1); FUNCTIONS IN: helicase activity, ATPase activity; INVOLVED IN: methylation-dependent chromatin silencing, DNA mediated transformation, transposition, RNA-mediated; LOCATED IN: nucleosome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 436.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1594.0) &  (original description: no original description)","protein_coding"
"PSME_00002380-RA","No alias","Pseudotsuga menziesii","(at2g18760 : 1200.0) chromatin remodeling 8 (CHR8); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: DNA repair, response to gamma radiation; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 24 (TAIR:AT5G63950.1); Has 17230 Blast hits to 14463 proteins in 1653 species: Archae - 99; Bacteria - 4180; Metazoa - 3846; Fungi - 4219; Plants - 1677; Viruses - 118; Other Eukaryotes - 3091 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 275.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 2400.0) &  (original description: no original description)","protein_coding"
"PSME_00005283-RA","No alias","Pseudotsuga menziesii","(at3g54280 : 1379.0) ROOT GROWTH DEFECTIVE 3 (RGD3); FUNCTIONS IN: helicase activity, binding, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), DEAD-like helicase, N-terminal (InterPro:IPR014001), Armadillo-type fold (InterPro:IPR016024), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1). & (q7g8y3|isw2_orysa : 213.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 2758.0) &  (original description: no original description)","protein_coding"
"PSME_00005765-RA","No alias","Pseudotsuga menziesii","(q7g8y3|isw2_orysa : 1630.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (at3g06400 : 1614.0) Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature.; chromatin-remodeling protein 11 (CHR11); FUNCTIONS IN: in 7 functions; INVOLVED IN: cell growth, embryo sac development; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), SLIDE (InterPro:IPR015195), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2). & (reliability: 3228.0) &  (original description: no original description)","protein_coding"
"PSME_00006567-RA","No alias","Pseudotsuga menziesii","(at5g44800 : 1157.0) chromatin remodeling 4 (CHR4); FUNCTIONS IN: in 6 functions; INVOLVED IN: chromatin assembly or disassembly, regulation of transcription; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Homeodomain-related (InterPro:IPR012287), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 35726 Blast hits to 27895 proteins in 2283 species: Archae - 135; Bacteria - 6476; Metazoa - 12546; Fungi - 6155; Plants - 3074; Viruses - 328; Other Eukaryotes - 7012 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 357.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 2314.0) &  (original description: no original description)","protein_coding"
"PSME_00008176-RA","No alias","Pseudotsuga menziesii","(at5g05130 : 678.0) DNA/RNA helicase protein; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1356.0) &  (original description: no original description)","protein_coding"
"PSME_00008400-RA","No alias","Pseudotsuga menziesii","(at4g25640 : 96.7) Encodes a multidrug and toxin efflux family transporter. Involved in flavonoid metabolism, affecting Root growth, seed development and germination, and pollen development, release and viability.; detoxifying efflux carrier 35 (DTX35); FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: anther dehiscence, flavonoid metabolic process, pollen development; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT4G00350.1). & (reliability: 184.0) &  (original description: no original description)","protein_coding"
"PSME_00008566-RA","No alias","Pseudotsuga menziesii","(at1g03750 : 511.0) switch 2 (SWI2); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1); Has 20033 Blast hits to 14398 proteins in 1655 species: Archae - 120; Bacteria - 5954; Metazoa - 4199; Fungi - 4321; Plants - 1927; Viruses - 177; Other Eukaryotes - 3335 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 112.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1022.0) &  (original description: no original description)","protein_coding"
"PSME_00009907-RA","No alias","Pseudotsuga menziesii","(at2g25170 : 144.0) Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1.  Is an extragenic suppressor of slr2 (SSL2).  Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1.  It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis.; PICKLE (PKL); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF1086 (InterPro:IPR009462), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor, putative (TAIR:AT4G31900.1); Has 20234 Blast hits to 17178 proteins in 1958 species: Archae - 161; Bacteria - 5176; Metazoa - 5098; Fungi - 4334; Plants - 1876; Viruses - 134; Other Eukaryotes - 3455 (source: NCBI BLink). & (reliability: 288.0) &  (original description: no original description)","protein_coding"
"PSME_00011717-RA","No alias","Pseudotsuga menziesii","(at5g44800 : 341.0) chromatin remodeling 4 (CHR4); FUNCTIONS IN: in 6 functions; INVOLVED IN: chromatin assembly or disassembly, regulation of transcription; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Homeodomain-related (InterPro:IPR012287), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 35726 Blast hits to 27895 proteins in 2283 species: Archae - 135; Bacteria - 6476; Metazoa - 12546; Fungi - 6155; Plants - 3074; Viruses - 328; Other Eukaryotes - 7012 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 171.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 682.0) &  (original description: no original description)","protein_coding"
"PSME_00012041-RA","No alias","Pseudotsuga menziesii","(at3g54460 : 1031.0) SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), SNF2-related (InterPro:IPR000330), F-box domain, Skp2-like (InterPro:IPR022364), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 15028 Blast hits to 11196 proteins in 1367 species: Archae - 59; Bacteria - 4030; Metazoa - 3400; Fungi - 4173; Plants - 1458; Viruses - 121; Other Eukaryotes - 1787 (source: NCBI BLink). & (reliability: 2062.0) &  (original description: no original description)","protein_coding"
"PSME_00012052-RA","No alias","Pseudotsuga menziesii","(at2g46020 : 1579.0) Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Also mediates repression of expression of seed storage proteins in vegetative tissues. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.; BRAHMA (BRM); FUNCTIONS IN: helicase activity, transcription regulator activity, DNA binding, ATP binding; INVOLVED IN: ATP-dependent chromatin remodeling, organ boundary specification between lateral organs and the meristem, regulation of gene expression, epigenetic; LOCATED IN: cytosol, nucleus, chromatin remodeling complex; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Bromodomain (InterPro:IPR001487), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G28290.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 345.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 3158.0) &  (original description: no original description)","protein_coding"
"PSME_00012491-RA","No alias","Pseudotsuga menziesii","(at1g05120 : 579.0) Helicase protein with RING/U-box domain; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G02670.1); Has 29218 Blast hits to 14448 proteins in 1607 species: Archae - 124; Bacteria - 8622; Metazoa - 6656; Fungi - 6694; Plants - 2674; Viruses - 189; Other Eukaryotes - 4259 (source: NCBI BLink). & (reliability: 1158.0) &  (original description: no original description)","protein_coding"
"PSME_00013264-RA","No alias","Pseudotsuga menziesii","(at1g08600 : 743.0) ATRX; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1). & (q7g8y3|isw2_orysa : 116.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1486.0) &  (original description: no original description)","protein_coding"
"PSME_00013853-RA","No alias","Pseudotsuga menziesii","(at3g19210 : 887.0) Encodes RAD54, a member of the SWI2/SNF2 family of DNA-stimulated ATPases.  Functions in DNA repair via homologous recombination.; homolog of RAD54 (RAD54); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: DNA repair, response to gamma radiation, double-strand break repair via homologous recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: style (sensu Poaceae), hydathode, root, petiole; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: switch 2 (TAIR:AT1G03750.1). & (q7g8y3|isw2_orysa : 186.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1774.0) &  (original description: no original description)","protein_coding"
"PSME_00013965-RA","No alias","Pseudotsuga menziesii","(at3g57300 : 1516.0) Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family.  Functions as a positive regulator of DNA homologous recombination (HR).  In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type.  Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration.  INO80 was also shown to regulate a subset of the Arabidopsis transcriptome.; INO80 ortholog (INO80); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: somatic cell DNA recombination, positive regulation of DNA repair, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA binding domain, INO80 (InterPro:IPR020838), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein (TAIR:AT3G12810.1). & (q7g8y3|isw2_orysa : 249.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 3032.0) &  (original description: no original description)","protein_coding"
"PSME_00014059-RA","No alias","Pseudotsuga menziesii","(p49661|copd_orysa : 325.0) Coatomer subunit delta (Delta-coat protein) (Delta-COP) (Archain) - Oryza sativa (Rice) & (at5g05010 : 321.0) clathrin adaptor complexes medium subunit family protein; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Longin-like (InterPro:IPR011012); Has 717 Blast hits to 709 proteins in 223 species: Archae - 0; Bacteria - 2; Metazoa - 237; Fungi - 248; Plants - 88; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink). & (reliability: 642.0) &  (original description: no original description)","protein_coding"
"PSME_00014499-RA","No alias","Pseudotsuga menziesii","(at2g25170 : 283.0) Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1.  Is an extragenic suppressor of slr2 (SSL2).  Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1.  It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis.; PICKLE (PKL); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF1086 (InterPro:IPR009462), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor, putative (TAIR:AT4G31900.1); Has 20234 Blast hits to 17178 proteins in 1958 species: Archae - 161; Bacteria - 5176; Metazoa - 5098; Fungi - 4334; Plants - 1876; Viruses - 134; Other Eukaryotes - 3455 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 175.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 566.0) &  (original description: no original description)","protein_coding"
"PSME_00015528-RA","No alias","Pseudotsuga menziesii","(at3g57300 : 1091.0) Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family.  Functions as a positive regulator of DNA homologous recombination (HR).  In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type.  Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration.  INO80 was also shown to regulate a subset of the Arabidopsis transcriptome.; INO80 ortholog (INO80); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: somatic cell DNA recombination, positive regulation of DNA repair, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA binding domain, INO80 (InterPro:IPR020838), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein (TAIR:AT3G12810.1). & (q7g8y3|isw2_orysa : 251.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 2182.0) &  (original description: no original description)","protein_coding"
"PSME_00017433-RA","No alias","Pseudotsuga menziesii","(at5g22750 : 1092.0) DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer; RAD5; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: embryo, sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT5G43530.1); Has 27107 Blast hits to 18179 proteins in 1771 species: Archae - 108; Bacteria - 7266; Metazoa - 8140; Fungi - 5089; Plants - 2446; Viruses - 173; Other Eukaryotes - 3885 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 97.4) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 2184.0) &  (original description: no original description)","protein_coding"
"PSME_00018507-RA","No alias","Pseudotsuga menziesii","(at1g61140 : 805.0) embryo sac development arrest 16 (EDA16); FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; INVOLVED IN: embryo sac development; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G11100.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 90.5) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1610.0) &  (original description: no original description)","protein_coding"
"PSME_00020767-RA","No alias","Pseudotsuga menziesii","(at2g02090 : 793.0) ETL1; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 5 (TAIR:AT2G13370.1); Has 19948 Blast hits to 16374 proteins in 2059 species: Archae - 127; Bacteria - 6550; Metazoa - 3755; Fungi - 4012; Plants - 1782; Viruses - 219; Other Eukaryotes - 3503 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 155.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 1586.0) &  (original description: no original description)","protein_coding"
"PSME_00021957-RA","No alias","Pseudotsuga menziesii","(at2g16390 : 284.0) Putative chromatin remodeling protein, member of a plant-specific subfamily of SWI2/SNF2-like proteins.  Mutations nearly eliminate non-CpG methylation at a target promoter but do not affect rDNA or centromere methylation.  Cooperates with PolIVb to facilitate RNA-directed de novo methylation and silencing of homologous DNA.  Endogenous targets include intergenic regions near retrotransposon LTRs or short RNA encoding sequences that might epigenetically regulate adjacent genes.  May be used to establish a basal yet reversible level of silencing in euchromatin.; DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1 (DRD1); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: DNA methylation, production of siRNA involved in RNA interference; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 34 (TAIR:AT2G21450.1); Has 13448 Blast hits to 11886 proteins in 1506 species: Archae - 91; Bacteria - 3564; Metazoa - 3285; Fungi - 3284; Plants - 1229; Viruses - 105; Other Eukaryotes - 1890 (source: NCBI BLink). & (reliability: 568.0) &  (original description: no original description)","protein_coding"
"PSME_00023466-RA","No alias","Pseudotsuga menziesii","(at1g57870 : 129.0) shaggy-like kinase 42 (SK42); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: response to salt stress, hyperosmotic response; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: shaggy-like protein kinase 41 (TAIR:AT1G09840.6). & (q40518|msk1_tobac : 123.0) Shaggy-related protein kinase NtK-1 (EC 2.7.11.1) - Nicotiana tabacum (Common tobacco) & (reliability: 244.0) &  (original description: no original description)","protein_coding"
"PSME_00024130-RA","No alias","Pseudotsuga menziesii","(q5h7p5|ebm_lillo : 855.0) Mannosylglycoprotein endo-beta-mannosidase (EC 3.2.1.152) (Endo-beta-mannosidase) [Contains: Mannosylglycoprotein endo-beta-mannosidase 31 kDa subunit; Mannosylglycoprotein endo-beta-mannosidase 28 kDa subunit; Mannosylglycoprotein endo- & (at1g09010 : 831.0) glycoside hydrolase family 2 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich (InterPro:IPR006102), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase family 2, TIM barrel (InterPro:IPR006103), Glycoside hydrolase, family 2 (InterPro:IPR006101), Glycoside hydrolase family 2, carbohydrate-binding (InterPro:IPR006104), Galactose-binding domain-like (InterPro:IPR008979), Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain (InterPro:IPR013812), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); Has 5072 Blast hits to 5044 proteins in 1162 species: Archae - 18; Bacteria - 3983; Metazoa - 234; Fungi - 319; Plants - 43; Viruses - 2; Other Eukaryotes - 473 (source: NCBI BLink). & (reliability: 1662.0) &  (original description: no original description)","protein_coding"
"PSME_00027418-RA","No alias","Pseudotsuga menziesii","(at1g05490 : 440.0) chromatin remodeling 31 (chr31); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 40 (TAIR:AT3G24340.1); Has 38115 Blast hits to 26256 proteins in 2107 species: Archae - 207; Bacteria - 10267; Metazoa - 11226; Fungi - 5719; Plants - 1929; Viruses - 244; Other Eukaryotes - 8523 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 93.6) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 880.0) &  (original description: no original description)","protein_coding"
"PSME_00030069-RA","No alias","Pseudotsuga menziesii","(at4g00350 : 105.0) MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink). & (reliability: 210.0) &  (original description: no original description)","protein_coding"
"PSME_00030499-RA","No alias","Pseudotsuga menziesii","(at5g22750 : 179.0) DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer; RAD5; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: embryo, sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT5G43530.1); Has 27107 Blast hits to 18179 proteins in 1771 species: Archae - 108; Bacteria - 7266; Metazoa - 8140; Fungi - 5089; Plants - 2446; Viruses - 173; Other Eukaryotes - 3885 (source: NCBI BLink). & (reliability: 358.0) &  (original description: no original description)","protein_coding"
"PSME_00033042-RA","No alias","Pseudotsuga menziesii","(at5g44800 : 101.0) chromatin remodeling 4 (CHR4); FUNCTIONS IN: in 6 functions; INVOLVED IN: chromatin assembly or disassembly, regulation of transcription; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Homeodomain-related (InterPro:IPR012287), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 35726 Blast hits to 27895 proteins in 2283 species: Archae - 135; Bacteria - 6476; Metazoa - 12546; Fungi - 6155; Plants - 3074; Viruses - 328; Other Eukaryotes - 7012 (source: NCBI BLink). & (reliability: 202.0) &  (original description: no original description)","protein_coding"
"PSME_00034862-RA","No alias","Pseudotsuga menziesii","(at5g44800 : 103.0) chromatin remodeling 4 (CHR4); FUNCTIONS IN: in 6 functions; INVOLVED IN: chromatin assembly or disassembly, regulation of transcription; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Homeodomain-related (InterPro:IPR012287), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 35726 Blast hits to 27895 proteins in 2283 species: Archae - 135; Bacteria - 6476; Metazoa - 12546; Fungi - 6155; Plants - 3074; Viruses - 328; Other Eukaryotes - 7012 (source: NCBI BLink). & (reliability: 206.0) &  (original description: no original description)","protein_coding"
"PSME_00036208-RA","No alias","Pseudotsuga menziesii","(at2g28290 : 200.0) Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral  homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates  flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation.  Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms  differs in juvenile and in adult tissues. The C-terminal domain is not required for activity.; SPLAYED (SYD); CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Homeotic gene regulator (TAIR:AT3G06010.1); Has 38598 Blast hits to 29293 proteins in 2471 species: Archae - 323; Bacteria - 8462; Metazoa - 11641; Fungi - 6683; Plants - 2383; Viruses - 257; Other Eukaryotes - 8849 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 82.8) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 400.0) &  (original description: no original description)","protein_coding"
"PSME_00046462-RA","No alias","Pseudotsuga menziesii","(at5g44800 : 112.0) chromatin remodeling 4 (CHR4); FUNCTIONS IN: in 6 functions; INVOLVED IN: chromatin assembly or disassembly, regulation of transcription; LOCATED IN: chromatin, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Homeodomain-related (InterPro:IPR012287), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor CHD3 (PICKLE) (TAIR:AT2G25170.1); Has 35726 Blast hits to 27895 proteins in 2283 species: Archae - 135; Bacteria - 6476; Metazoa - 12546; Fungi - 6155; Plants - 3074; Viruses - 328; Other Eukaryotes - 7012 (source: NCBI BLink). & (reliability: 224.0) &  (original description: no original description)","protein_coding"
"Seita.1G119500.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.1G119900.1","No alias","Setaria italica ","DNA helicase *(MOM1)","protein_coding"
"Seita.1G178200.1","No alias","Setaria italica ","chromatin remodeling factor *(Rad5)","protein_coding"
"Seita.1G278400.1","No alias","Setaria italica ","ATPase component *(PIE1) of SWR1 chromatin remodeling complex","protein_coding"
"Seita.1G329800.1","No alias","Setaria italica ","chromatin remodeling factor *(RAD54)","protein_coding"
"Seita.2G023300.1","No alias","Setaria italica ","chromatin remodeling factor *(DDM1)","protein_coding"
"Seita.2G227500.1","No alias","Setaria italica ","SMARCA component *(SYD/BRM/MINU)","protein_coding"
"Seita.2G227600.1","No alias","Setaria italica ","SMARCA component *(SYD/BRM/MINU)","protein_coding"
"Seita.2G297900.1","No alias","Setaria italica ","chromatin remodeling factor *(Rad5) & chromatin remodeling factor *(Ris1)","protein_coding"
"Seita.2G320900.1","No alias","Setaria italica ","CHD3-type chromatin remodeling factor *(PKL/PKR)","protein_coding"
"Seita.2G328700.1","No alias","Setaria italica ","chromatin remodeling factor *(Rad5-like)","protein_coding"
"Seita.2G378100.1","No alias","Setaria italica ","chromatin remodeling factor *(SMARCAL1)","protein_coding"
"Seita.2G405000.1","No alias","Setaria italica ","chromatin remodeling factor *(SMARCAL1)","protein_coding"
"Seita.2G409900.1","No alias","Setaria italica ","chromatin remodeling factor *(Rad5)","protein_coding"
"Seita.2G419600.1","No alias","Setaria italica ","component *(CHR5) of SAGA transcription co-activator complex & CHD1-type chromatin remodeling factor *(CHR5)","protein_coding"
"Seita.2G433700.1","No alias","Setaria italica ","chromatin remodeling factor *(SHPRH)","protein_coding"
"Seita.2G442300.1","No alias","Setaria italica ","RDR2-polymerase accessory protein *(CLSY1/2)","protein_coding"
"Seita.3G001300.1","No alias","Setaria italica ","chromatin remodeling factor *(ERCC6)","protein_coding"
"Seita.3G058900.1","No alias","Setaria italica ","SMARCA component *(SYD/BRM/MINU)","protein_coding"
"Seita.3G121500.1","No alias","Setaria italica ","chromatin remodeling factor *(Mot1) & TATA box-binding protein-associated factor *(MOT1)","protein_coding"
"Seita.3G197600.1","No alias","Setaria italica ","chromatin remodeling factor *(Rad5) & chromatin remodeling factor *(Ris1)","protein_coding"
"Seita.3G254300.1","No alias","Setaria italica ","regulatory protein *(CLSY3/4) of transacting siRNA pathway","protein_coding"
"Seita.4G001500.1","No alias","Setaria italica ","DNA helicase *(MOM1)","protein_coding"
"Seita.4G050000.1","No alias","Setaria italica ","CHD3-type chromatin remodeling factor *(PKL/PKR)","protein_coding"
"Seita.4G112400.1","No alias","Setaria italica ","SMARCA component *(SYD/BRM/MINU)","protein_coding"
"Seita.5G067700.1","No alias","Setaria italica ","DNA repair protein *(CSB/ERCC6) & chromatin remodeling factor *(ERCC6)","protein_coding"
"Seita.5G166800.1","No alias","Setaria italica ","ATPase component *(CHR11/CHR17) of ISWI chromatin remodeling complexes","protein_coding"
"Seita.5G264900.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G339900.1","No alias","Setaria italica ","chromatin remodeling factor *(Ris1)","protein_coding"
"Seita.5G402900.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G455100.1","No alias","Setaria italica ","chromatin remodeling factor *(SHPRH)","protein_coding"
"Seita.6G108300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.6G109100.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.7G030800.1","No alias","Setaria italica ","chromatin remodeling factor *(Rad5)","protein_coding"
"Seita.7G200700.1","No alias","Setaria italica ","ATPase component *(Etl1)","protein_coding"
"Seita.7G248400.1","No alias","Setaria italica ","chromatin remodeling factor *(Rad5) & chromatin remodeling factor *(Ris1)","protein_coding"
"Seita.9G112500.1","No alias","Setaria italica ","chromatin remodeling factor *(DDM1)","protein_coding"
"Seita.9G188400.1","No alias","Setaria italica ","chromatin remodeling factor *(ERCC6)","protein_coding"
"Seita.9G232900.1","No alias","Setaria italica ","chromatin remodeling factor *(ATRX)","protein_coding"
"Seita.9G302200.1","No alias","Setaria italica ","component *(DRD1) of DNA methylation accessory complex","protein_coding"
"Seita.9G402800.1","No alias","Setaria italica ","ATPase component *(Ino80) of chromatin remodelling complex","protein_coding"
"Seita.9G461000.1","No alias","Setaria italica ","RDR2-polymerase accessory protein *(CLSY1/2) & regulatory protein *(CLSY3/4) of transacting siRNA pathway","protein_coding"
"Seita.9G529000.1","No alias","Setaria italica ","component *(DRD1) of DNA methylation accessory complex","protein_coding"
"Seita.9G578200.1","No alias","Setaria italica ","chromatin remodeling factor *(ALC1)","protein_coding"
"Sobic.001G109700.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(DDM1)","protein_coding"
"Sobic.001G191500.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(ERCC6)","protein_coding"
"Sobic.001G230000.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(ATRX)","protein_coding"
"Sobic.001G370900.2","No alias","Sorghum bicolor ","ATPase component *(Ino80) of chromatin remodelling complex","protein_coding"
"Sobic.001G494100.1","No alias","Sorghum bicolor ","component *(DRD1) of DNA methylation accessory complex","protein_coding"
"Sobic.001G543100.2","No alias","Sorghum bicolor ","chromatin remodeling factor *(ALC1)","protein_coding"
"Sobic.002G021200.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(DDM1)","protein_coding"
"Sobic.002G308700.1","No alias","Sorghum bicolor ","CHD3-type chromatin remodeling factor *(PKL/PKR)","protein_coding"
"Sobic.002G315100.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(Rad5-like)","protein_coding"
"Sobic.002G363700.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(SMARCAL1)","protein_coding"
"Sobic.002G389800.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(SMARCAL1)","protein_coding"
"Sobic.002G394200.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(Rad5)","protein_coding"
"Sobic.002G404700.1","No alias","Sorghum bicolor ","CHD1-type chromatin remodeling factor *(CHR5) & component *(CHR5) of SAGA transcription co-activator complex","protein_coding"
"Sobic.002G418600.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(SHPRH)","protein_coding"
"Sobic.002G428700.1","No alias","Sorghum bicolor ","RDR2-polymerase accessory protein *(CLSY1/2)","protein_coding"
"Sobic.003G107500.1","No alias","Sorghum bicolor ","DNA repair protein *(CSB/ERCC6) & chromatin remodeling factor *(ERCC6)","protein_coding"
"Sobic.003G163200.1","No alias","Sorghum bicolor ","ATPase component *(CHR11/CHR17) of ISWI chromatin remodeling complexes","protein_coding"
"Sobic.003G316500.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(Ris1)","protein_coding"
"Sobic.003G377300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.003G428000.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(SHPRH)","protein_coding"
"Sobic.004G007133.1","No alias","Sorghum bicolor ","component *(SPT16) of FACT histone chaperone complex","protein_coding"
"Sobic.004G007900.1","No alias","Sorghum bicolor ","DNA helicase *(MOM1)","protein_coding"
"Sobic.004G009600.1","No alias","Sorghum bicolor ","SMARCA component *(SYD/BRM/MINU)","protein_coding"
"Sobic.004G163000.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(Rad5)","protein_coding"
"Sobic.004G276400.4","No alias","Sorghum bicolor ","ATPase component *(PIE1) of SWR1 chromatin remodeling complex","protein_coding"
"Sobic.004G299200.2","No alias","Sorghum bicolor ","regulatory protein *(CLSY3/4) of transacting siRNA pathway","protein_coding"
"Sobic.004G307900.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(RAD54)","protein_coding"
"Sobic.006G029300.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(Rad5)","protein_coding"
"Sobic.006G180700.1","No alias","Sorghum bicolor ","ATPase component *(Etl1)","protein_coding"
"Sobic.006G225700.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(Rad5) & chromatin remodeling factor *(Ris1)","protein_coding"
"Sobic.006G225900.2","No alias","Sorghum bicolor ","chromatin remodeling factor *(Rad5) & chromatin remodeling factor *(Ris1)","protein_coding"
"Sobic.006G281400.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(ERCC6)","protein_coding"
"Sobic.007G034200.1","No alias","Sorghum bicolor ","component *(DRD1) of DNA methylation accessory complex","protein_coding"
"Sobic.007G063000.2","No alias","Sorghum bicolor ","chromatin remodeling factor *(Rad5) & chromatin remodeling factor *(Ris1)","protein_coding"
"Sobic.009G040600.1","No alias","Sorghum bicolor ","SMARCA component *(SYD/BRM/MINU)","protein_coding"
"Sobic.009G126700.2","No alias","Sorghum bicolor ","regulatory protein *(CLSY3/4) of transacting siRNA pathway","protein_coding"
"Sobic.009G256400.1","No alias","Sorghum bicolor ","chromatin remodeling factor *(Mot1) & TATA box-binding protein-associated factor *(MOT1)","protein_coding"
"Sobic.010G001100.1","No alias","Sorghum bicolor ","DNA helicase *(MOM1)","protein_coding"
"Sobic.010G065300.1","No alias","Sorghum bicolor ","CHD3-type chromatin remodeling factor *(PKL/PKR)","protein_coding"
"Sobic.010G105200.1","No alias","Sorghum bicolor ","SMARCA component *(SYD/BRM/MINU)","protein_coding"
"Solyc01g060460","No alias","Solanum lycopersicum","chromatin remodeling 31 (AHRD V3.3 *** AT1G05490.1)","protein_coding"
"Solyc01g067390","No alias","Solanum lycopersicum","RNA helicase DEAH-box1","protein_coding"
"Solyc01g068280","No alias","Solanum lycopersicum","chromatin remodeling 24 (AHRD V3.3 *** AT5G63950.1)","protein_coding"
"Solyc01g068300","No alias","Solanum lycopersicum","Chromatin remodeling 31, putative (AHRD V3.3 *-* A0A061FRH7_THECC)","protein_coding"
"Solyc01g068320","No alias","Solanum lycopersicum","chromatin remodeling 31 (AHRD V3.3 *** AT1G05490.1)","protein_coding"
"Solyc01g079690","No alias","Solanum lycopersicum","SWI/SNF2-type chromatin remodelling ATPase","protein_coding"
"Solyc01g094800","No alias","Solanum lycopersicum","ATP-dependent helicase BRM (AHRD V3.3 *** W9QEL4_9ROSA)","protein_coding"
"Solyc01g109970","No alias","Solanum lycopersicum","SNF2 domain-containing protein / helicase domain-containing protein (AHRD V3.3 *** AT2G16390.2)","protein_coding"
"Solyc02g014770","No alias","Solanum lycopersicum","RNA helicase DEAH-box7","protein_coding"
"Solyc02g033050","No alias","Solanum lycopersicum","LOW QUALITY:chromatin remodeling 31 (AHRD V3.3 *-* AT1G05490.1)","protein_coding"
"Solyc02g050280","No alias","Solanum lycopersicum","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein (AHRD V3.3 *** AT1G50410.4)","protein_coding"
"Solyc02g062780","No alias","Solanum lycopersicum","chromatin remodeling 1 (AHRD V3.3 *** AT5G66750.1)","protein_coding"
"Solyc02g068560","No alias","Solanum lycopersicum","CHD3-type chromatin-remodeling factor PICKLE (AHRD V3.3 *** A0A142CD29_9LAMI)","protein_coding"
"Solyc02g085390","No alias","Solanum lycopersicum","chromatin remodeling 1 (AHRD V3.3 *** AT5G66750.1)","protein_coding"
"Solyc03g005460","No alias","Solanum lycopersicum","Helicase protein with RING/U-box domain-containing protein (AHRD V3.3 *** AT5G43530.1)","protein_coding"
"Solyc03g006570","No alias","Solanum lycopersicum","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein (AHRD V3.3 *** AT1G61140.3)","protein_coding"
"Solyc03g063220","No alias","Solanum lycopersicum","RNA helicase DEAH-box8","protein_coding"
"Solyc03g095680","No alias","Solanum lycopersicum","SNF2 domain protein/helicase domain protein (AHRD V3.3 *** G7KD91_MEDTR)","protein_coding"
"Solyc03g115530","No alias","Solanum lycopersicum","SNF2 domain-containing protein (AHRD V3.3 *** D7M0M5_ARALL)","protein_coding"
"Solyc04g016370","No alias","Solanum lycopersicum","DNA helicase INO80-like protein (AHRD V3.3 *** AT3G57300.4)","protein_coding"
"Solyc04g050150","No alias","Solanum lycopersicum","RNA helicase DEAH-box13","protein_coding"
"Solyc04g054440","No alias","Solanum lycopersicum","LOW QUALITY:chromatin remodeling 31 (AHRD V3.3 *-* AT1G05490.1)","protein_coding"
"Solyc04g056410","No alias","Solanum lycopersicum","DNA repair/recombination protein (AHRD V3.3 *** AT3G19210.1)","protein_coding"
"Solyc05g044480","No alias","Solanum lycopersicum","RNA helicase DEAH-box16","protein_coding"
"Solyc05g044510","No alias","Solanum lycopersicum","RNA helicase DEAH-box17","protein_coding"
"Solyc06g010200","No alias","Solanum lycopersicum","Chromatin remodeling complex subunit, putative isoform 2 (AHRD V3.3 *-* A0A061GY85_THECC)","protein_coding"
"Solyc06g050510","No alias","Solanum lycopersicum","DNA repair rhp54 (AHRD V3.3 *** A0A0B0NS67_GOSAR)","protein_coding"
"Solyc06g054560","No alias","Solanum lycopersicum","RNA helicase DEAH-box19","protein_coding"
"Solyc06g065730","No alias","Solanum lycopersicum","chromatin remodeling factor CHD3 (PICKLE) (AHRD V3.3 *** AT2G25170.4)","protein_coding"
"Solyc07g041430","No alias","Solanum lycopersicum","SNF2 domain-containing protein / helicase domain-containing protein (AHRD V3.3 *-* AT2G02090.1)","protein_coding"
"Solyc07g041470","No alias","Solanum lycopersicum","Retrovirus-related Pol polyprotein from transposon TNT 1-94 (AHRD V3.3 *-* A0A151TD74_CAJCA)","protein_coding"
"Solyc07g051960","No alias","Solanum lycopersicum","SNF2 domain-containing protein (AHRD V3.3 *** D7KEB6_ARALL)","protein_coding"
"Solyc07g051970","No alias","Solanum lycopersicum","Helicase protein with RING/U-box domain-containing protein (AHRD V3.3 *** AT1G05120.1)","protein_coding"
"Solyc07g051980","No alias","Solanum lycopersicum","SNF2 domain-containing protein (AHRD V3.3 *** D7KEB6_ARALL)","protein_coding"
"Solyc07g052000","No alias","Solanum lycopersicum","LOW QUALITY:SNF2 domain-containing protein (AHRD V3.3 *-* D7KEB6_ARALL)","protein_coding"
"Solyc07g052010","No alias","Solanum lycopersicum","SNF2 domain-containing protein (AHRD V3.3 *** D7KEB6_ARALL)","protein_coding"
"Solyc07g052020","No alias","Solanum lycopersicum","SNF2 domain-containing protein / helicase domain-containing protein (AHRD V3.3 *-* AT3G12810.2)","protein_coding"
"Solyc07g052100","No alias","Solanum lycopersicum","SNF2 domain-containing protein (AHRD V3.3 *** D7KEB6_ARALL)","protein_coding"
"Solyc07g053870","No alias","Solanum lycopersicum","Helicase family protein (AHRD V3.3 *** U5FHT2_POPTR)","protein_coding"
"Solyc08g022040","No alias","Solanum lycopersicum","LOW QUALITY:SNF2 domain-containing protein / helicase domain-containing protein (AHRD V3.3 *-* AT2G16390.2)","protein_coding"
"Solyc08g029130","No alias","Solanum lycopersicum","chromatin remodeling factor CHD3 (PICKLE) (AHRD V3.3 *** AT2G25170.4)","protein_coding"
"Solyc08g061340","No alias","Solanum lycopersicum","LOW QUALITY:Chromatin remodeling 31, putative (AHRD V3.3 *-* A0A061FRH7_THECC)","protein_coding"
"Solyc08g061370","No alias","Solanum lycopersicum","LOW QUALITY:chromatin remodeling 31 (AHRD V3.3 *-* AT1G05490.1)","protein_coding"
"Solyc08g061410","No alias","Solanum lycopersicum","LOW QUALITY:Chromatin remodeling 31, putative (AHRD V3.3 *-* A0A061FRH7_THECC)","protein_coding"
"Solyc08g061990","No alias","Solanum lycopersicum","LOW QUALITY:chromatin remodeling 31 (AHRD V3.3 *-* AT1G05490.1)","protein_coding"
"Solyc08g062000","No alias","Solanum lycopersicum","LOW QUALITY:chromatin remodeling 31 (AHRD V3.3 *-* AT1G05490.1)","protein_coding"
"Solyc08g062070","No alias","Solanum lycopersicum","LOW QUALITY:SNF2 domain-containing protein / helicase domain-containing protein (AHRD V3.3 *-* AT2G16390.2)","protein_coding"
"Solyc08g074500","No alias","Solanum lycopersicum","TATA-binding protein associated factor-like protein (AHRD V3.3 *** A0A072UIT4_MEDTR)","protein_coding"
"Solyc08g077590","No alias","Solanum lycopersicum","LOW QUALITY:chromatin remodeling 31 (AHRD V3.3 *-* AT1G05490.1)","protein_coding"
"Solyc08g077600","No alias","Solanum lycopersicum","LOW QUALITY:chromatin remodeling 31 (AHRD V3.3 *-* AT1G05490.1)","protein_coding"
"Solyc08g077610","No alias","Solanum lycopersicum","chromatin remodeling 31 (AHRD V3.3 *-* AT1G05490.1)","protein_coding"
"Solyc08g077670","No alias","Solanum lycopersicum","LOW QUALITY:chromatin remodeling 31 (AHRD V3.3 *-* AT1G05490.1)","protein_coding"
"Solyc08g077690","No alias","Solanum lycopersicum","Chromatin remodeling 31, putative (AHRD V3.3 *** A0A061FRH7_THECC)","protein_coding"
"Solyc09g066500","No alias","Solanum lycopersicum","chromatin remodeling 8 (AHRD V3.3 *** AT2G18760.7)","protein_coding"
"Solyc10g049750","No alias","Solanum lycopersicum","Helicase protein with RING/U-box domain-containing protein (AHRD V3.3 *** AT1G05120.1)","protein_coding"
"Solyc11g005250","No alias","Solanum lycopersicum","SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (AHRD V3.3 *** AT3G54460.1)","protein_coding"
"Solyc11g062010","No alias","Solanum lycopersicum","Chromatin structure-remodeling complex subunit snf21 (AHRD V3.3 *-* A0A0B2P221_GLYSO)","protein_coding"
"Solyc11g066790","No alias","Solanum lycopersicum","Helicase protein with RING/U-box domain-containing protein (AHRD V3.3 *** AT5G43530.1)","protein_coding"
"Solyc12g020110","No alias","Solanum lycopersicum","SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein (AHRD V3.3 *** AT1G11100.1)","protein_coding"
"Solyc12g098860","No alias","Solanum lycopersicum","chromatin remodeling factor18 (AHRD V3.3 *** AT1G48310.1)","protein_coding"
"Solyc12g099910","No alias","Solanum lycopersicum","chromatin remodeling 5 (AHRD V3.3 *** AT2G13370.3)","protein_coding"
"Sopen01g026600","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen01g029280","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen01g030220","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen01g030240","No alias","Solanum pennellii","Integrase core domain","protein_coding"
"Sopen01g030250","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen01g030260","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen01g030290","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen01g031470","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen01g038570","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen01g052160","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen02g008610","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen02g013810","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen02g017710","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen02g030080","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen03g001490","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen03g002560","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen03g015780","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen03g025610","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen03g034520","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen04g008460","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen04g020860","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen04g024270","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen04g025310","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen05g026810","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen05g026850","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen06g005090","No alias","Solanum pennellii","Chromo (CHRromatin Organisation MOdifier) domain","protein_coding"
"Sopen06g016030","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen06g019630","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen06g024260","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen07g021000","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen07g025550","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen07g025580","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen07g025620","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen07g025670","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen07g025730","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen07g025820","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen07g027840","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen08g010020","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen08g017570","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen08g017580","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen08g023150","No alias","Solanum pennellii","Domain of unknown function (DUF3535)","protein_coding"
"Sopen08g026150","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen08g026180","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen08g026200","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen09g028210","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen10g020740","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen10g028210","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen11g001260","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen11g023970","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen11g026510","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen12g011610","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen12g033610","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"
"Sopen12g034530","No alias","Solanum pennellii","SNF2 family N-terminal domain","protein_coding"