"sequence_id","alias","species","description","type"
"104906","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"106157","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"110504","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"111871","No alias","Selaginella moellendorffii ","peroxin 6","protein_coding"
"115678","No alias","Selaginella moellendorffii ","peroxisome 1","protein_coding"
"123078","No alias","Selaginella moellendorffii ","ATPase family associated with various cellular activities (AAA)","protein_coding"
"123803","No alias","Selaginella moellendorffii ","regulatory particle triple-A ATPase 3","protein_coding"
"123911","No alias","Selaginella moellendorffii ","regulatory particle triple-A ATPase 3","protein_coding"
"137147","No alias","Selaginella moellendorffii ","AAA-type ATPase family protein","protein_coding"
"139105","No alias","Selaginella moellendorffii ","regulatory particle triple-A ATPase 6A","protein_coding"
"139726","No alias","Selaginella moellendorffii ","FtsH extracellular protease family","protein_coding"
"141788","No alias","Selaginella moellendorffii ","lon protease 2","protein_coding"
"142036","No alias","Selaginella moellendorffii ","AAA-type ATPase family protein","protein_coding"
"145748","No alias","Selaginella moellendorffii ","ATPase, AAA-type, CDC48 protein","protein_coding"
"146742","No alias","Selaginella moellendorffii ","regulatory particle triple-A 1A","protein_coding"
"147913","No alias","Selaginella moellendorffii ","Clp ATPase","protein_coding"
"149735","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"149856","No alias","Selaginella moellendorffii ","FtsH extracellular protease family","protein_coding"
"152929","No alias","Selaginella moellendorffii ","FtsH extracellular protease family","protein_coding"
"163630","No alias","Selaginella moellendorffii ","regulatory particle triple-A ATPase 3","protein_coding"
"164653","No alias","Selaginella moellendorffii ","FTSH protease 11","protein_coding"
"166381","No alias","Selaginella moellendorffii ","AAA-type ATPase family protein","protein_coding"
"166773","No alias","Selaginella moellendorffii ","AAA-type ATPase family protein","protein_coding"
"167789","No alias","Selaginella moellendorffii ","FTSH protease 9","protein_coding"
"168159","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"169256","No alias","Selaginella moellendorffii ","FTSH protease 10","protein_coding"
"170139","No alias","Selaginella moellendorffii ","cell division cycle protein 48-related / CDC48-related","protein_coding"
"170696","No alias","Selaginella moellendorffii ","heat shock protein 101","protein_coding"
"171164","No alias","Selaginella moellendorffii ","regulatory particle triple-A ATPase 4A","protein_coding"
"172575","No alias","Selaginella moellendorffii ","FTSH protease 4","protein_coding"
"173081","No alias","Selaginella moellendorffii ","cell division cycle 48B","protein_coding"
"174539","No alias","Selaginella moellendorffii ","casein lytic proteinase B3","protein_coding"
"177014","No alias","Selaginella moellendorffii ","regulatory particle triple-A ATPase 6A","protein_coding"
"180600","No alias","Selaginella moellendorffii ","regulatory particle triple-A ATPase 3","protein_coding"
"182690","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"18983","No alias","Selaginella moellendorffii ","FTSH protease 4","protein_coding"
"231444","No alias","Selaginella moellendorffii ","AAA-type ATPase family protein","protein_coding"
"231598","No alias","Selaginella moellendorffii ","casein lytic proteinase B3","protein_coding"
"233533","No alias","Selaginella moellendorffii ","FTSH protease 10","protein_coding"
"235493","No alias","Selaginella moellendorffii ","replication factor C subunit 3","protein_coding"
"236550","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"23739","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"267030","No alias","Selaginella moellendorffii ","regulatory particle AAA-ATPase 2A","protein_coding"
"267596","No alias","Selaginella moellendorffii ","AAA-type ATPase family protein","protein_coding"
"268097","No alias","Selaginella moellendorffii ","ATPase, AAA-type, CDC48 protein","protein_coding"
"268623","No alias","Selaginella moellendorffii ","rubisco activase","protein_coding"
"271275","No alias","Selaginella moellendorffii ","AAA-type ATPase family protein","protein_coding"
"30423","No alias","Selaginella moellendorffii ","lon protease 4","protein_coding"
"35516","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"405160","No alias","Selaginella moellendorffii ","lon protease 2","protein_coding"
"407065","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"407213","No alias","Selaginella moellendorffii ","AAA-type ATPase family protein","protein_coding"
"409075","No alias","Selaginella moellendorffii ","Sugar isomerase (SIS) family protein","protein_coding"
"409598","No alias","Selaginella moellendorffii ","Cam interacting protein 111","protein_coding"
"410877","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"411118","No alias","Selaginella moellendorffii ","casein lytic proteinase B3","protein_coding"
"411212","No alias","Selaginella moellendorffii ","casein lytic proteinase B3","protein_coding"
"412710","No alias","Selaginella moellendorffii ","pleiotropic drug resistance 12","protein_coding"
"412715","No alias","Selaginella moellendorffii ","FTSH protease 4","protein_coding"
"413949","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"415966","No alias","Selaginella moellendorffii ","AAA-type ATPase family protein","protein_coding"
"415967","No alias","Selaginella moellendorffii ","peroxisome 1","protein_coding"
"417146","No alias","Selaginella moellendorffii ","Function unknown","protein_coding"
"417271","No alias","Selaginella moellendorffii ","FTSH protease 4","protein_coding"
"418378","No alias","Selaginella moellendorffii ","casein lytic proteinase B3","protein_coding"
"418380","No alias","Selaginella moellendorffii ","casein lytic proteinase B3","protein_coding"
"419965","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"420183","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"422466","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"425287","No alias","Selaginella moellendorffii ","regulatory particle triple-A ATPase 3","protein_coding"
"425290","No alias","Selaginella moellendorffii ","regulatory particle triple-A ATPase 3","protein_coding"
"437606","No alias","Selaginella moellendorffii ","AAA-type ATPase family protein / ankyrin repeat family protein","protein_coding"
"439163","No alias","Selaginella moellendorffii ","CLPC homologue 1","protein_coding"
"439468","No alias","Selaginella moellendorffii ","CLP protease regulatory subunit X","protein_coding"
"440320","No alias","Selaginella moellendorffii ","ATP-dependent Clp protease","protein_coding"
"440620","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"441130","No alias","Selaginella moellendorffii ","regulatory particle triple-A ATPase 6A","protein_coding"
"441720","No alias","Selaginella moellendorffii ","pleiotropic drug resistance 7","protein_coding"
"441722","No alias","Selaginella moellendorffii ","pleiotropic drug resistance 12","protein_coding"
"444435","No alias","Selaginella moellendorffii ","lon protease 2","protein_coding"
"447043","No alias","Selaginella moellendorffii ","methionine sulfoxide reductase B 2","protein_coding"
"51018","No alias","Selaginella moellendorffii ","origin recognition complex 1","protein_coding"
"59883","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"61702","No alias","Selaginella moellendorffii ","cell division cycle 48C","protein_coding"
"640","No alias","Selaginella moellendorffii ","Cam interacting protein 111","protein_coding"
"74992","No alias","Selaginella moellendorffii ","regulatory particle triple-A ATPase 5A","protein_coding"
"75451","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"75992","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"78692","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"79406","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"79425","No alias","Selaginella moellendorffii ","rubisco activase","protein_coding"
"79603","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"81377","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"81522","No alias","Selaginella moellendorffii ","FTSH protease 12","protein_coding"
"82367","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"89456","No alias","Selaginella moellendorffii ","cell division cycle 48C","protein_coding"
"89990","No alias","Selaginella moellendorffii ","FtsH extracellular protease family","protein_coding"
"90486","No alias","Selaginella moellendorffii ","replication factor C 2","protein_coding"
"90980","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"91155","No alias","Selaginella moellendorffii ","AAA-type ATPase family protein","protein_coding"
"97809","No alias","Selaginella moellendorffii ","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"98264","No alias","Selaginella moellendorffii ","cell division protein ftsH, putative","protein_coding"
"98591","No alias","Selaginella moellendorffii ","FtsH extracellular protease family","protein_coding"
"A4A49_00211","No alias","Nicotiana attenuata","26s protease regulatory subunit 6b-like protein","protein_coding"
"A4A49_00285","No alias","Nicotiana attenuata","protein suppressor of k(+) transport growth defect 1","protein_coding"
"A4A49_00718","No alias","Nicotiana attenuata","hypothetical protein","protein_coding"
"A4A49_00825","No alias","Nicotiana attenuata","chaperone protein clpd, chloroplastic","protein_coding"
"A4A49_01048","No alias","Nicotiana attenuata","ribulose bisphosphate carboxylaseoxygenase activase 1, chloroplastic","protein_coding"
"A4A49_01473","No alias","Nicotiana attenuata","katanin p60 atpase-containing subunit a1","protein_coding"
"A4A49_01474","No alias","Nicotiana attenuata","katanin p60 atpase-containing subunit a1","protein_coding"
"A4A49_02312","No alias","Nicotiana attenuata","aaa-atpase","protein_coding"
"A4A49_02889","No alias","Nicotiana attenuata","hypothetical protein","protein_coding"
"A4A49_03586","No alias","Nicotiana attenuata","katanin p60 atpase-containing subunit a1","protein_coding"
"A4A49_03613","No alias","Nicotiana attenuata","chaperone protein clpb1","protein_coding"
"A4A49_03924","No alias","Nicotiana attenuata","aaa-atpase","protein_coding"
"A4A49_03997","No alias","Nicotiana attenuata","aaa-atpase","protein_coding"
"A4A49_04858","No alias","Nicotiana attenuata","atpase family aaa domain-containing protein","protein_coding"
"A4A49_05352","No alias","Nicotiana attenuata","26s protease regulatory subunit s10b-like b","protein_coding"
"A4A49_05481","No alias","Nicotiana attenuata","ribulose bisphosphate carboxylaseoxygenase activase 1, chloroplastic","protein_coding"
"A4A49_05550","No alias","Nicotiana attenuata","cell division control protein 48-like b","protein_coding"
"A4A49_05643","No alias","Nicotiana attenuata","protein hyper-sensitivity-related 4","protein_coding"
"A4A49_06091","No alias","Nicotiana attenuata","atp-dependent zinc metalloprotease ftsh 4, mitochondrial","protein_coding"
"A4A49_06168","No alias","Nicotiana attenuata","replication factor c subunit 5","protein_coding"
"A4A49_06555","No alias","Nicotiana attenuata","atp-dependent zinc metalloprotease ftsh 8, mitochondrial","protein_coding"
"A4A49_06556","No alias","Nicotiana attenuata","atp-dependent zinc metalloprotease ftsh 8, mitochondrial","protein_coding"
"A4A49_06559","No alias","Nicotiana attenuata","ribulose bisphosphate carboxylaseoxygenase activase 2, chloroplastic","protein_coding"
"A4A49_06679","No alias","Nicotiana attenuata","ribulose bisphosphate carboxylaseoxygenase activase, chloroplastic","protein_coding"
"A4A49_06755","No alias","Nicotiana attenuata","lon protease-like 2, peroxisomal","protein_coding"
"A4A49_07335","No alias","Nicotiana attenuata","atp-dependent zinc metalloprotease ftsh, chloroplastic","protein_coding"
"A4A49_07542","No alias","Nicotiana attenuata","26s protease regulatory subunit 6b-like protein","protein_coding"
"A4A49_07672","No alias","Nicotiana attenuata","aaa-atpase","protein_coding"
"A4A49_07748","No alias","Nicotiana attenuata","atp-dependent zinc metalloprotease ftsh 11, chloroplasticmitochondrial","protein_coding"
"A4A49_08225","No alias","Nicotiana attenuata","atp-dependent zinc metalloprotease ftsh 6, chloroplastic","protein_coding"
"A4A49_08439","No alias","Nicotiana attenuata","26s protease regulatory subunit 8-like a","protein_coding"
"A4A49_09205","No alias","Nicotiana attenuata","peroxisome biogenesis protein 1","protein_coding"
"A4A49_09675","No alias","Nicotiana attenuata","cell division cycle protein 48-like protein","protein_coding"
"A4A49_09823","No alias","Nicotiana attenuata","replication factor c subunit 3","protein_coding"
"A4A49_10147","No alias","Nicotiana attenuata","atp-dependent clp protease atp-binding subunit clpa-like cd4b, chloroplastic","protein_coding"
"A4A49_10451","No alias","Nicotiana attenuata","cell division cycle protein 48-like protein","protein_coding"
"A4A49_10528","No alias","Nicotiana attenuata","atp-dependent zinc metalloprotease ftsh, chloroplastic","protein_coding"
"A4A49_10729","No alias","Nicotiana attenuata","katanin p60 atpase-containing subunit a1","protein_coding"
"A4A49_10992","No alias","Nicotiana attenuata","cell division cycle protein 48-like protein","protein_coding"
"A4A49_11012","No alias","Nicotiana attenuata","hypothetical protein","protein_coding"
"A4A49_11121","No alias","Nicotiana attenuata","aaa-atpase","protein_coding"
"A4A49_11651","No alias","Nicotiana attenuata","peroxisome biogenesis protein 6","protein_coding"
"A4A49_11925","No alias","Nicotiana attenuata","aaa-atpase","protein_coding"
"A4A49_12785","No alias","Nicotiana attenuata","katanin p60 atpase-containing subunit a1","protein_coding"
"A4A49_13206","No alias","Nicotiana attenuata","atpase family aaa domain-containing protein","protein_coding"
"A4A49_14071","No alias","Nicotiana attenuata","26s protease regulatory subunit 6a-like protein","protein_coding"
"A4A49_14272","No alias","Nicotiana attenuata","clp protease regulatory subunit clpx1, mitochondrial","protein_coding"
"A4A49_14286","No alias","Nicotiana attenuata","hypothetical protein","protein_coding"
"A4A49_15221","No alias","Nicotiana attenuata","protein hyper-sensitivity-related 4","protein_coding"
"A4A49_15826","No alias","Nicotiana attenuata","protein suppressor of k(+) transport growth defect 1","protein_coding"
"A4A49_16357","No alias","Nicotiana attenuata","atp-dependent clp protease atp-binding subunit clpa-like cd4b, chloroplastic","protein_coding"
"A4A49_16358","No alias","Nicotiana attenuata","hypothetical protein","protein_coding"
"A4A49_16988","No alias","Nicotiana attenuata","putative inactive atp-dependent zinc metalloprotease ftshi 3, chloroplastic","protein_coding"
"A4A49_17749","No alias","Nicotiana attenuata","atp-dependent zinc metalloprotease ftsh 10, mitochondrial","protein_coding"
"A4A49_18240","No alias","Nicotiana attenuata","atp-dependent zinc metalloprotease ftsh 12, chloroplastic","protein_coding"
"A4A49_18622","No alias","Nicotiana attenuata","cell division control protein 48-like c","protein_coding"
"A4A49_19249","No alias","Nicotiana attenuata","chaperone protein clpb3, chloroplastic","protein_coding"
"A4A49_19356","No alias","Nicotiana attenuata","26s protease regulatory subunit 6a-like protein","protein_coding"
"A4A49_21009","No alias","Nicotiana attenuata","katanin p60 atpase-containing subunit a1","protein_coding"
"A4A49_21295","No alias","Nicotiana attenuata","katanin p60 atpase-containing subunit a1","protein_coding"
"A4A49_21385","No alias","Nicotiana attenuata","protein hyper-sensitivity-related 4","protein_coding"
"A4A49_21403","No alias","Nicotiana attenuata","protein suppressor of k(+) transport growth defect 1","protein_coding"
"A4A49_21724","No alias","Nicotiana attenuata","pachytene checkpoint protein 2-like protein","protein_coding"
"A4A49_21881","No alias","Nicotiana attenuata","vesicle-fusing atpase","protein_coding"
"A4A49_22693","No alias","Nicotiana attenuata","katanin p60 atpase-containing subunit a1","protein_coding"
"A4A49_23119","No alias","Nicotiana attenuata","katanin p60 atpase-containing subunit a1","protein_coding"
"A4A49_23412","No alias","Nicotiana attenuata","protein suppressor of max2 1","protein_coding"
"A4A49_23822","No alias","Nicotiana attenuata","atp-dependent zinc metalloprotease ftsh 4, mitochondrial","protein_coding"
"A4A49_23850","No alias","Nicotiana attenuata","origin of replication complex subunit 4","protein_coding"
"A4A49_25160","No alias","Nicotiana attenuata","putative inactive atp-dependent zinc metalloprotease ftshi 4, chloroplastic","protein_coding"
"A4A49_25383","No alias","Nicotiana attenuata","hypothetical protein","protein_coding"
"A4A49_25386","No alias","Nicotiana attenuata","clp protease regulatory subunit clpx3, mitochondrial","protein_coding"
"A4A49_25650","No alias","Nicotiana attenuata","aaa-atpase","protein_coding"
"A4A49_25651","No alias","Nicotiana attenuata","aaa-atpase","protein_coding"
"A4A49_26083","No alias","Nicotiana attenuata","katanin p60 atpase-containing subunit a1","protein_coding"
"A4A49_26399","No alias","Nicotiana attenuata","chaperone protein clpb1","protein_coding"
"A4A49_27407","No alias","Nicotiana attenuata","putative inactive atp-dependent zinc metalloprotease ftshi 5, chloroplastic","protein_coding"
"A4A49_27642","No alias","Nicotiana attenuata","katanin p60 atpase-containing subunit a1","protein_coding"
"A4A49_27847","No alias","Nicotiana attenuata","protein smax1-like 7","protein_coding"
"A4A49_29272","No alias","Nicotiana attenuata","putative inactive atp-dependent zinc metalloprotease ftshi 1, chloroplastic","protein_coding"
"A4A49_29338","No alias","Nicotiana attenuata","aaa-atpase","protein_coding"
"A4A49_30058","No alias","Nicotiana attenuata","replication factor c subunit 2","protein_coding"
"A4A49_30232","No alias","Nicotiana attenuata","protein suppressor of k(+) transport growth defect 1","protein_coding"
"A4A49_30865","No alias","Nicotiana attenuata","cell division cycle protein 48-like protein","protein_coding"
"A4A49_31295","No alias","Nicotiana attenuata","aaa-atpase","protein_coding"
"A4A49_31296","No alias","Nicotiana attenuata","katanin p60 atpase-containing subunit a1","protein_coding"
"A4A49_31416","No alias","Nicotiana attenuata","cell division control protein 48-like c","protein_coding"
"A4A49_31805","No alias","Nicotiana attenuata","vesicle-fusing atpase","protein_coding"
"A4A49_31992","No alias","Nicotiana attenuata","chaperone protein clpb3, mitochondrial","protein_coding"
"A4A49_31999","No alias","Nicotiana attenuata","katanin p60 atpase-containing subunit a1","protein_coding"
"A4A49_32189","No alias","Nicotiana attenuata","protein hyper-sensitivity-related 4","protein_coding"
"A4A49_33756","No alias","Nicotiana attenuata","protein hyper-sensitivity-related 4","protein_coding"
"A4A49_33950","No alias","Nicotiana attenuata","calmodulin-interacting protein 111","protein_coding"
"A4A49_33987","No alias","Nicotiana attenuata","katanin p60 atpase-containing subunit a1","protein_coding"
"A4A49_34087","No alias","Nicotiana attenuata","vesicle-fusing atpase","protein_coding"
"A4A49_34254","No alias","Nicotiana attenuata","aaa-atpase asd, mitochondrial","protein_coding"
"A4A49_34255","No alias","Nicotiana attenuata","aaa-atpase","protein_coding"
"A4A49_34522","No alias","Nicotiana attenuata","26s protease regulatory subunit 7-like a","protein_coding"
"A4A49_34713","No alias","Nicotiana attenuata","aaa-atpase asd, mitochondrial","protein_coding"
"A4A49_34774","No alias","Nicotiana attenuata","katanin p60 atpase-containing subunit a1","protein_coding"
"A4A49_35005","No alias","Nicotiana attenuata","26s proteasome regulatory subunit 4-like a","protein_coding"
"A4A49_35154","No alias","Nicotiana attenuata","26s protease regulatory subunit 6a-like protein","protein_coding"
"A4A49_35491","No alias","Nicotiana attenuata","clp protease regulatory subunit clpx2, mitochondrial","protein_coding"
"A4A49_36886","No alias","Nicotiana attenuata","katanin p60 atpase-containing subunit a1","protein_coding"
"A4A49_37515","No alias","Nicotiana attenuata","katanin p60 atpase-containing subunit a1","protein_coding"
"A4A49_37691","No alias","Nicotiana attenuata","protein smax1-like 7","protein_coding"
"A4A49_38088","No alias","Nicotiana attenuata","protein suppressor of k(+) transport growth defect 1","protein_coding"
"A4A49_38491","No alias","Nicotiana attenuata","atp-dependent zinc metalloprotease ftsh 9, chloroplastic","protein_coding"
"A4A49_38669","No alias","Nicotiana attenuata","putative inactive atp-dependent zinc metalloprotease ftshi 2, chloroplastic","protein_coding"
"A4A49_39242","No alias","Nicotiana attenuata","cell division control protein 48-like d","protein_coding"
"A4A49_39349","No alias","Nicotiana attenuata","aaa-atpase","protein_coding"
"A4A49_40673","No alias","Nicotiana attenuata","replication factor c subunit 2","protein_coding"
"A4A49_40738","No alias","Nicotiana attenuata","origin of replication complex subunit 1a","protein_coding"
"A4A49_41408","No alias","Nicotiana attenuata","katanin p60 atpase-containing subunit a1","protein_coding"
"A4A49_41435","No alias","Nicotiana attenuata","atp-dependent zinc metalloprotease ftsh 2, chloroplastic","protein_coding"
"A4A49_42098","No alias","Nicotiana attenuata","peroxisome biogenesis protein 1","protein_coding"
"A4A49_43434","No alias","Nicotiana attenuata","atp-dependent zinc metalloprotease ftsh 8, mitochondrial","protein_coding"
"A4A49_60061","No alias","Nicotiana attenuata","26s protease regulatory subunit 6b-like protein","protein_coding"
"A4A49_60169","No alias","Nicotiana attenuata","cell division cycle protein 48-like protein","protein_coding"
"A4A49_60211","No alias","Nicotiana attenuata","26s protease regulatory subunit 7-like a","protein_coding"
"A4A49_62399","No alias","Nicotiana attenuata","26s protease regulatory subunit s10b-like b","protein_coding"
"A4A49_62932","No alias","Nicotiana attenuata","origin of replication complex subunit 4","protein_coding"
"A4A49_63169","No alias","Nicotiana attenuata","26s protease regulatory subunit s10b-like b","protein_coding"
"A4A49_64686","No alias","Nicotiana attenuata","putative inactive atp-dependent zinc metalloprotease ftshi 1, chloroplastic","protein_coding"
"A4A49_64924","No alias","Nicotiana attenuata","cell division cycle protein 48-like protein","protein_coding"
"A4A49_65086","No alias","Nicotiana attenuata","26s protease regulatory subunit 7","protein_coding"
"A4A49_65581","No alias","Nicotiana attenuata","26s proteasome regulatory subunit 4-like a","protein_coding"
"A4A49_65593","No alias","Nicotiana attenuata","26s protease regulatory subunit 8-like a","protein_coding"
"AC233854.1_FG002","No alias","Zea mays","cytochrome BC1 synthesis","protein_coding"
"AC233949.1_FG004","No alias","Zea mays","ATPase, AAA-type, CDC48 protein","protein_coding"
"At1g02890","No alias","Arabidopsis thaliana","AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:F4HZ82]","protein_coding"
"At1g03000","No alias","Arabidopsis thaliana","Peroxisome biogenesis protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY16]","protein_coding"
"At1g04730","No alias","Arabidopsis thaliana","p-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I5S3]","protein_coding"
"At1g05910","No alias","Arabidopsis thaliana","ATPase family AAA domain-containing protein At1g05910 [Source:UniProtKB/Swiss-Prot;Acc:F4IAE9]","protein_coding"
"At1g06430","No alias","Arabidopsis thaliana","ATP-dependent zinc metalloprotease FTSH 8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8W585]","protein_coding"
"At1g07510","No alias","Arabidopsis thaliana","ATP-dependent zinc metalloprotease FTSH 10, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VZI8]","protein_coding"
"At1g09100","No alias","Arabidopsis thaliana","26S proteasome regulatory subunit 6A homolog B [Source:UniProtKB/Swiss-Prot;Acc:O04019]","protein_coding"
"At1g21690","No alias","Arabidopsis thaliana","ATPase family associated with various cellular activities (AAA) [Source:UniProtKB/TrEMBL;Acc:F4HY43]","protein_coding"
"At1g24290","No alias","Arabidopsis thaliana","AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:O48696]","protein_coding"
"At1g33360","No alias","Arabidopsis thaliana","CLP protease regulatory subunit CLPX3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q66GN9]","protein_coding"
"At1g43910","No alias","Arabidopsis thaliana","AAA-ATPase At1g43910 [Source:UniProtKB/Swiss-Prot;Acc:Q9LP11]","protein_coding"
"At1g45000","No alias","Arabidopsis thaliana","26S proteasome regulatory subunit S10B homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9MAK9]","protein_coding"
"At1g50140","No alias","Arabidopsis thaliana","p-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I4Y6]","protein_coding"
"At1g50250","No alias","Arabidopsis thaliana","ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39102]","protein_coding"
"At1g53750","No alias","Arabidopsis thaliana","RPT1A [Source:UniProtKB/TrEMBL;Acc:A0A178W3N8]","protein_coding"
"At1g53780","No alias","Arabidopsis thaliana","26S proteasome regulatory complex ATPase [Source:UniProtKB/TrEMBL;Acc:F4HTC3]","protein_coding"
"At1g62130","No alias","Arabidopsis thaliana","AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:F4HX45]","protein_coding"
"At1g63160","No alias","Arabidopsis thaliana","Replication factor C subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAM7]","protein_coding"
"At1g64110","No alias","Arabidopsis thaliana","p-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I5A3]","protein_coding"
"At1g73110","No alias","Arabidopsis thaliana","At1g73110/F3N23_39 [Source:UniProtKB/TrEMBL;Acc:Q9AST9]","protein_coding"
"At1g73170","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT1G73170]","protein_coding"
"At1g74310","No alias","Arabidopsis thaliana","Chaperone protein ClpB1 [Source:UniProtKB/Swiss-Prot;Acc:P42730]","protein_coding"
"At1g77470","No alias","Arabidopsis thaliana","Replication factor C subunit 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAQ8]","protein_coding"
"At1g79560","No alias","Arabidopsis thaliana","AT1G79560 protein [Source:UniProtKB/TrEMBL;Acc:B9DHQ6]","protein_coding"
"At1g80350","No alias","Arabidopsis thaliana","Katanin p60 ATPase-containing subunit A1 [Source:UniProtKB/TrEMBL;Acc:Q0WR11]","protein_coding"
"At2g01120","No alias","Arabidopsis thaliana","Origin of replication complex subunit 4 [Source:UniProtKB/TrEMBL;Acc:F4IM82]","protein_coding"
"At2g03670","No alias","Arabidopsis thaliana","Cell division control protein 48 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPR1]","protein_coding"
"At2g18190","No alias","Arabidopsis thaliana","AAA-ATPase At2g18190 [Source:UniProtKB/Swiss-Prot;Acc:F4IQG2]","protein_coding"
"At2g18193","No alias","Arabidopsis thaliana","AAA-ATPase At2g18193 [Source:UniProtKB/Swiss-Prot;Acc:Q8GW96]","protein_coding"
"At2g18330","No alias","Arabidopsis thaliana","AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPW5]","protein_coding"
"At2g20140","No alias","Arabidopsis thaliana","RPT2b [Source:UniProtKB/TrEMBL;Acc:A0A178VM16]","protein_coding"
"At2g25140","No alias","Arabidopsis thaliana","Chaperone protein ClpB4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8VYJ7]","protein_coding"
"At2g26140","No alias","Arabidopsis thaliana","ATP-dependent zinc metalloprotease FTSH 4, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O80983]","protein_coding"
"At2g27600","No alias","Arabidopsis thaliana","Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNT0]","protein_coding"
"At2g29080","No alias","Arabidopsis thaliana","ATP-dependent zinc metalloprotease FTSH 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84WU8]","protein_coding"
"At2g30950","No alias","Arabidopsis thaliana","FtsH extracellular protease family [Source:TAIR;Acc:AT2G30950]","protein_coding"
"At2g34560","No alias","Arabidopsis thaliana","AT2G34560 protein [Source:UniProtKB/TrEMBL;Acc:B9DGC0]","protein_coding"
"At2g39730","No alias","Arabidopsis thaliana","Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P10896]","protein_coding"
"At2g40130","No alias","Arabidopsis thaliana","Protein SMAX1-LIKE 8 [Source:UniProtKB/Swiss-Prot;Acc:F4IGZ2]","protein_coding"
"At2g45500","No alias","Arabidopsis thaliana","AAA-type ATPase family protein [Source:TAIR;Acc:AT2G45500]","protein_coding"
"At2g46620","No alias","Arabidopsis thaliana","AAA-ATPase At2g46620 [Source:UniProtKB/Swiss-Prot;Acc:F4IJ77]","protein_coding"
"At3g01610","No alias","Arabidopsis thaliana","Cell division cycle 48C [Source:UniProtKB/TrEMBL;Acc:A0A1I9LNC6]","protein_coding"
"At3g02450","No alias","Arabidopsis thaliana","Probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M895]","protein_coding"
"At3g03060","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WVF7]","protein_coding"
"At3g04340","No alias","Arabidopsis thaliana","Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4J3N2]","protein_coding"
"At3g05530","No alias","Arabidopsis thaliana","26S proteasome regulatory subunit 6A homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI2]","protein_coding"
"At3g05775","No alias","Arabidopsis thaliana","Lon protease-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LME3]","protein_coding"
"At3g05780","No alias","Arabidopsis thaliana","Lon protease homolog 3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M9L8]","protein_coding"
"At3g05790","No alias","Arabidopsis thaliana","Lon protease homolog 4, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M9L7]","protein_coding"
"At3g09840","No alias","Arabidopsis thaliana","AT3G09840 protein [Source:UniProtKB/TrEMBL;Acc:B9DI55]","protein_coding"
"At3g10420","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J3R7]","protein_coding"
"At3g15120","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LIM2]","protein_coding"
"At3g16290","No alias","Arabidopsis thaliana","Probable inactive ATP-dependent zinc metalloprotease FTSHI 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:A8MPR5]","protein_coding"
"At3g19740","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JCC9]","protein_coding"
"At3g24530","No alias","Arabidopsis thaliana","AAA-type ATPase family protein / ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q9C5C7]","protein_coding"
"At3g27120","No alias","Arabidopsis thaliana","ATPase family AAA domain-containing protein FIGL1 [Source:UniProtKB/Swiss-Prot;Acc:F4JEX5]","protein_coding"
"At3g28510","No alias","Arabidopsis thaliana","AAA-ATPase At3g28510 [Source:UniProtKB/Swiss-Prot;Acc:Q9LH84]","protein_coding"
"At3g28520","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT3G28520]","protein_coding"
"At3g28540","No alias","Arabidopsis thaliana","AAA-ATPase At3g28540 [Source:UniProtKB/Swiss-Prot;Acc:Q9LH82]","protein_coding"
"At3g28570","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRU0]","protein_coding"
"At3g28580","No alias","Arabidopsis thaliana","AAA-ATPase At3g28580 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJJ7]","protein_coding"
"At3g28600","No alias","Arabidopsis thaliana","AAA-ATPase At3g28600 [Source:UniProtKB/Swiss-Prot;Acc:F4J0C0]","protein_coding"
"At3g28610","No alias","Arabidopsis thaliana","AAA-ATPase At3g28610 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJJ5]","protein_coding"
"At3g29800","No alias","Arabidopsis thaliana","Mitochondrial protein-like contains similarity to AAA-type ATPase [Source:UniProtKB/TrEMBL;Acc:Q9LJ50]","protein_coding"
"At3g45450","No alias","Arabidopsis thaliana","ClpC-like protein [Source:UniProtKB/TrEMBL;Acc:Q9M1G2]","protein_coding"
"At3g47060","No alias","Arabidopsis thaliana","ATP-dependent zinc metalloprotease FTSH 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SD67]","protein_coding"
"At3g48870","No alias","Arabidopsis thaliana","Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]","protein_coding"
"At3g50930","No alias","Arabidopsis thaliana","Protein HYPER-SENSITIVITY-RELATED 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZG2]","protein_coding"
"At3g50940","No alias","Arabidopsis thaliana","AAA-ATPase At3g50940 [Source:UniProtKB/Swiss-Prot;Acc:Q147F9]","protein_coding"
"At3g53230","No alias","Arabidopsis thaliana","Cell division control protein 48 homolog D [Source:UniProtKB/Swiss-Prot;Acc:Q9SCN8]","protein_coding"
"At3g56690","No alias","Arabidopsis thaliana","Calmodulin-interacting protein 111 [Source:UniProtKB/Swiss-Prot;Acc:Q9LET7]","protein_coding"
"At4g02480","No alias","Arabidopsis thaliana","AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q0WM93]","protein_coding"
"At4g04180","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G04180]","protein_coding"
"At4g04910","No alias","Arabidopsis thaliana","NSF [Source:UniProtKB/TrEMBL;Acc:A0A178UTB9]","protein_coding"
"At4g05340","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9M0W1]","protein_coding"
"At4g05380","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G05380]","protein_coding"
"At4g12620","No alias","Arabidopsis thaliana","UNE13 [Source:UniProtKB/TrEMBL;Acc:A0A178UTR9]","protein_coding"
"At4g14670","No alias","Arabidopsis thaliana","Putative chaperone protein ClpB2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4JVJ1]","protein_coding"
"At4g14675","No alias","Arabidopsis thaliana","Chaperone ClpB1-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B5U7]","protein_coding"
"At4g14700","No alias","Arabidopsis thaliana","Origin of replication complex subunit 1A [Source:UniProtKB/Swiss-Prot;Acc:Q710E8]","protein_coding"
"At4g23940","No alias","Arabidopsis thaliana","Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22993]","protein_coding"
"At4g24710","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G24710]","protein_coding"
"At4g24860","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JRR2]","protein_coding"
"At4g25835","No alias","Arabidopsis thaliana","AAA-ATPase At4g25835 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY66]","protein_coding"
"At4g27680","No alias","Arabidopsis thaliana","26S proteasome regulatory particle chain RPT6-like protein [Source:UniProtKB/TrEMBL;Acc:Q9T090]","protein_coding"
"At4g28000","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G28000]","protein_coding"
"At4g29040","No alias","Arabidopsis thaliana","RPT2a [Source:UniProtKB/TrEMBL;Acc:A0A178V3V3]","protein_coding"
"At4g30250","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G30250]","protein_coding"
"At4g36580","No alias","Arabidopsis thaliana","AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:F4JQE9]","protein_coding"
"At5g03340","No alias","Arabidopsis thaliana","Cell division control protein 48 homolog E [Source:UniProtKB/Swiss-Prot;Acc:Q9LZF6]","protein_coding"
"At5g08470","No alias","Arabidopsis thaliana","Peroxisome biogenesis protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNP1]","protein_coding"
"At5g15250","No alias","Arabidopsis thaliana","ATP-dependent zinc metalloprotease FTSH 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q1PDW5]","protein_coding"
"At5g15450","No alias","Arabidopsis thaliana","Chaperone protein ClpB3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF37]","protein_coding"
"At5g16930","No alias","Arabidopsis thaliana","AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXI0]","protein_coding"
"At5g17730","No alias","Arabidopsis thaliana","AAA-ATPase At5g17730 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN78]","protein_coding"
"At5g17740","No alias","Arabidopsis thaliana","AAA-ATPase At5g17740 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN77]","protein_coding"
"At5g17750","No alias","Arabidopsis thaliana","AAA-ATPase At5g17750 [Source:UniProtKB/Swiss-Prot;Acc:F4KID5]","protein_coding"
"At5g17760","No alias","Arabidopsis thaliana","AAA-ATPase At5g17760 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN75]","protein_coding"
"At5g19990","No alias","Arabidopsis thaliana","26S proteasome regulatory subunit 8 homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9C5U3]","protein_coding"
"At5g20000","No alias","Arabidopsis thaliana","26S proteasome regulatory subunit 8 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q94BQ2]","protein_coding"
"At5g22010","No alias","Arabidopsis thaliana","Replication factor C subunit 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C587]","protein_coding"
"At5g26860","No alias","Arabidopsis thaliana","lon protease 1 [Source:TAIR;Acc:AT5G26860]","protein_coding"
"At5g40000","No alias","Arabidopsis thaliana","AAA-ATPase At5g40000 [Source:UniProtKB/Swiss-Prot;Acc:F4KFX5]","protein_coding"
"At5g40010","No alias","Arabidopsis thaliana","AAA-ATPase ASD, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FLD5]","protein_coding"
"At5g42270","No alias","Arabidopsis thaliana","VAR1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8J6]","protein_coding"
"At5g43010","No alias","Arabidopsis thaliana","26S proteasome regulatory subunit 10B homolog A [Source:UniProtKB/Swiss-Prot;Acc:Q9SEI3]","protein_coding"
"At5g47040","No alias","Arabidopsis thaliana","Lon protease homolog 2, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:O64948]","protein_coding"
"At5g49840","No alias","Arabidopsis thaliana","ATP-dependent Clp protease [Source:TAIR;Acc:AT5G49840]","protein_coding"
"At5g50920","No alias","Arabidopsis thaliana","Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]","protein_coding"
"At5g51070","No alias","Arabidopsis thaliana","Chaperone protein ClpD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42762]","protein_coding"
"At5g52882","No alias","Arabidopsis thaliana","P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KHN5]","protein_coding"
"At5g53170","No alias","Arabidopsis thaliana","ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FGM0]","protein_coding"
"At5g53350","No alias","Arabidopsis thaliana","CLPX [Source:UniProtKB/TrEMBL;Acc:A0A178USB7]","protein_coding"
"At5g53540","No alias","Arabidopsis thaliana","26S proteasome regulatory particle chain RPT6-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FJC9]","protein_coding"
"At5g57480","No alias","Arabidopsis thaliana","AAA-ATPase At5g57480 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM3]","protein_coding"
"At5g57710","No alias","Arabidopsis thaliana","Protein SUPPRESSOR OF MAX2 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH2]","protein_coding"
"At5g58290","No alias","Arabidopsis thaliana","RPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH2]","protein_coding"
"At5g58870","No alias","Arabidopsis thaliana","Ftsh9 [Source:UniProtKB/TrEMBL;Acc:A0A178UAY0]","protein_coding"
"At5g64580","No alias","Arabidopsis thaliana","Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:F4KF14]","protein_coding"
"Atcg00860","No alias","Arabidopsis thaliana","Protein Ycf2 [Source:UniProtKB/TrEMBL;Acc:A0A1B1W513]","protein_coding"
"Atcg01280","No alias","Arabidopsis thaliana","Protein Ycf2 [Source:UniProtKB/TrEMBL;Acc:A0A1B1W513]","protein_coding"
"Bradi1g01040","No alias","Brachypodium distachyon","casein lytic proteinase B4","protein_coding"
"Bradi1g01180","No alias","Brachypodium distachyon","heat shock protein 101","protein_coding"
"Bradi1g01240","No alias","Brachypodium distachyon","heat shock protein 101","protein_coding"
"Bradi1g01357","No alias","Brachypodium distachyon","heat shock protein 101","protein_coding"
"Bradi1g02240","No alias","Brachypodium distachyon","FTSH protease 4","protein_coding"
"Bradi1g02247","No alias","Brachypodium distachyon","FTSH protease 4","protein_coding"
"Bradi1g10689","No alias","Brachypodium distachyon","heat shock protein 101","protein_coding"
"Bradi1g16190","No alias","Brachypodium distachyon","casein lytic proteinase B3","protein_coding"
"Bradi1g16750","No alias","Brachypodium distachyon","regulatory particle AAA-ATPase 2A","protein_coding"
"Bradi1g17070","No alias","Brachypodium distachyon","lon protease 1","protein_coding"
"Bradi1g18160","No alias","Brachypodium distachyon","AAA-type ATPase family protein","protein_coding"
"Bradi1g26100","No alias","Brachypodium distachyon","cytochrome BC1 synthesis","protein_coding"
"Bradi1g26126","No alias","Brachypodium distachyon","cytochrome BC1 synthesis","protein_coding"
"Bradi1g26140","No alias","Brachypodium distachyon","cytochrome BC1 synthesis","protein_coding"
"Bradi1g26150","No alias","Brachypodium distachyon","cytochrome BC1 synthesis","protein_coding"
"Bradi1g29900","No alias","Brachypodium distachyon","FtsH extracellular protease family","protein_coding"
"Bradi1g30040","No alias","Brachypodium distachyon","regulatory particle triple-A ATPase 4A","protein_coding"
"Bradi1g32310","No alias","Brachypodium distachyon","FtsH extracellular protease family","protein_coding"
"Bradi1g33860","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi1g35110","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi1g36400","No alias","Brachypodium distachyon","AAA-type ATPase family protein","protein_coding"
"Bradi1g36830","No alias","Brachypodium distachyon","regulatory particle triple-A ATPase 6A","protein_coding"
"Bradi1g42850","No alias","Brachypodium distachyon","heat shock protein 101","protein_coding"
"Bradi1g42870","No alias","Brachypodium distachyon","heat shock protein 101","protein_coding"
"Bradi1g44957","No alias","Brachypodium distachyon","cytochrome BC1 synthesis","protein_coding"
"Bradi1g45160","No alias","Brachypodium distachyon","FTSH protease 6","protein_coding"
"Bradi1g45297","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi1g46760","No alias","Brachypodium distachyon","regulatory particle triple-A 1A","protein_coding"
"Bradi1g47050","No alias","Brachypodium distachyon","origin recognition complex 1","protein_coding"
"Bradi1g48010","No alias","Brachypodium distachyon","regulatory particle triple-A ATPase 5A","protein_coding"
"Bradi1g49040","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi1g49940","No alias","Brachypodium distachyon","AAA-type ATPase family protein","protein_coding"
"Bradi1g50460","No alias","Brachypodium distachyon","heat shock protein 101","protein_coding"
"Bradi1g50650","No alias","Brachypodium distachyon","heat shock protein 101","protein_coding"
"Bradi1g50660","No alias","Brachypodium distachyon","heat shock protein 101","protein_coding"
"Bradi1g51940","No alias","Brachypodium distachyon","cell division cycle 48C","protein_coding"
"Bradi1g54741","No alias","Brachypodium distachyon","AAA-ATPase 1","protein_coding"
"Bradi1g54750","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi1g54760","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi1g54800","No alias","Brachypodium distachyon","AAA-ATPase 1","protein_coding"
"Bradi1g55007","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi1g57680","No alias","Brachypodium distachyon","regulatory particle triple-A ATPase 4A","protein_coding"
"Bradi1g62731","No alias","Brachypodium distachyon","AAA-type ATPase family protein","protein_coding"
"Bradi1g65070","No alias","Brachypodium distachyon","regulatory particle AAA-ATPase 2A","protein_coding"
"Bradi1g67210","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi1g67387","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi1g74916","No alias","Brachypodium distachyon","ATPase, AAA-type, CDC48 protein","protein_coding"
"Bradi1g74922","No alias","Brachypodium distachyon","ATPase, AAA-type, CDC48 protein","protein_coding"
"Bradi1g75570","No alias","Brachypodium distachyon","ATPase, AAA-type, CDC48 protein","protein_coding"
"Bradi2g02730","No alias","Brachypodium distachyon","AAA-type ATPase family protein","protein_coding"
"Bradi2g07520","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi2g07900","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi2g14330","No alias","Brachypodium distachyon","FTSH protease 4","protein_coding"
"Bradi2g14590","No alias","Brachypodium distachyon","cytochrome BC1 synthesis","protein_coding"
"Bradi2g14610","No alias","Brachypodium distachyon","cytochrome BC1 synthesis","protein_coding"
"Bradi2g15490","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi2g18767","No alias","Brachypodium distachyon","CLP protease regulatory subunit X","protein_coding"
"Bradi2g19540","No alias","Brachypodium distachyon","heat shock protein 101","protein_coding"
"Bradi2g19572","No alias","Brachypodium distachyon","AAA-type ATPase family protein","protein_coding"
"Bradi2g23357","No alias","Brachypodium distachyon","FTSH protease 10","protein_coding"
"Bradi2g41610","No alias","Brachypodium distachyon","FTSH protease 4","protein_coding"
"Bradi2g42940","No alias","Brachypodium distachyon","cytochrome BC1 synthesis","protein_coding"
"Bradi2g43740","No alias","Brachypodium distachyon","FTSH protease 11","protein_coding"
"Bradi2g43980","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi2g44936","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi2g46130","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi2g46277","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi2g46700","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi2g48800","No alias","Brachypodium distachyon","regulatory particle triple-A 1A","protein_coding"
"Bradi2g49660","No alias","Brachypodium distachyon","heat shock protein 101","protein_coding"
"Bradi2g50290","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi2g54697","No alias","Brachypodium distachyon","FTSH protease 3","protein_coding"
"Bradi2g57240","No alias","Brachypodium distachyon","ATP-dependent Clp protease","protein_coding"
"Bradi3g06107","No alias","Brachypodium distachyon","casein lytic proteinase B4","protein_coding"
"Bradi3g07370","No alias","Brachypodium distachyon","AAA-type ATPase family protein","protein_coding"
"Bradi3g07700","No alias","Brachypodium distachyon","regulatory particle triple-A ATPase 6A","protein_coding"
"Bradi3g09890","No alias","Brachypodium distachyon","AAA-type ATPase family protein / ankyrin repeat family protein","protein_coding"
"Bradi3g10660","No alias","Brachypodium distachyon","CLP protease regulatory subunit X","protein_coding"
"Bradi3g10720","No alias","Brachypodium distachyon","regulatory particle triple-A ATPase 3","protein_coding"
"Bradi3g31130","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi3g35771","No alias","Brachypodium distachyon","ATPase, AAA-type, CDC48 protein","protein_coding"
"Bradi3g37561","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi3g42670","No alias","Brachypodium distachyon","peroxisome 1","protein_coding"
"Bradi3g44335","No alias","Brachypodium distachyon","CLPC homologue 1","protein_coding"
"Bradi3g44341","No alias","Brachypodium distachyon","CLPC homologue 1","protein_coding"
"Bradi3g44640","No alias","Brachypodium distachyon","Clp ATPase","protein_coding"
"Bradi3g45124","No alias","Brachypodium distachyon","heat shock protein 101","protein_coding"
"Bradi3g46170","No alias","Brachypodium distachyon","ATP-dependent Clp protease","protein_coding"
"Bradi3g50240","No alias","Brachypodium distachyon","FTSH protease 7","protein_coding"
"Bradi3g52367","No alias","Brachypodium distachyon","AAA-type ATPase family protein","protein_coding"
"Bradi3g52830","No alias","Brachypodium distachyon","AAA-type ATPase family protein","protein_coding"
"Bradi3g54490","No alias","Brachypodium distachyon","regulatory particle triple-A ATPase 5A","protein_coding"
"Bradi3g57410","No alias","Brachypodium distachyon","replication factor C subunit 3","protein_coding"
"Bradi3g59247","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi3g59726","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi4g00440","No alias","Brachypodium distachyon","AAA-ATPase 1","protein_coding"
"Bradi4g00460","No alias","Brachypodium distachyon","AAA-ATPase 1","protein_coding"
"Bradi4g00467","No alias","Brachypodium distachyon","AAA-ATPase 1","protein_coding"
"Bradi4g05327","No alias","Brachypodium distachyon","AAA-type ATPase family protein","protein_coding"
"Bradi4g07862","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi4g09120","No alias","Brachypodium distachyon","rubisco activase","protein_coding"
"Bradi4g09125","No alias","Brachypodium distachyon","rubisco activase","protein_coding"
"Bradi4g10700","No alias","Brachypodium distachyon","AAA-type ATPase family protein","protein_coding"
"Bradi4g16040","No alias","Brachypodium distachyon","replication factor C1","protein_coding"
"Bradi4g20470","No alias","Brachypodium distachyon","CLPC homologue 1","protein_coding"
"Bradi4g22080","No alias","Brachypodium distachyon","Cam interacting protein 111","protein_coding"
"Bradi4g30280","No alias","Brachypodium distachyon","regulatory particle triple-A ATPase 3","protein_coding"
"Bradi4g30930","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi4g31610","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi4g35150","No alias","Brachypodium distachyon","cell division cycle protein 48-related / CDC48-related","protein_coding"
"Bradi4g36160","No alias","Brachypodium distachyon","lon protease 2","protein_coding"
"Bradi4g37940","No alias","Brachypodium distachyon","regulatory particle triple-A ATPase 3","protein_coding"
"Bradi4g38180","No alias","Brachypodium distachyon","peroxisome 1","protein_coding"
"Bradi4g38187","No alias","Brachypodium distachyon","peroxisome 1","protein_coding"
"Bradi4g38237","No alias","Brachypodium distachyon","heat shock protein 101","protein_coding"
"Bradi4g39880","No alias","Brachypodium distachyon","CLPC homologue 1","protein_coding"
"Bradi4g40260","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi4g41240","No alias","Brachypodium distachyon","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Bradi5g08920","No alias","Brachypodium distachyon","Clp ATPase","protein_coding"
"Bradi5g12800","No alias","Brachypodium distachyon","cell division protein ftsH, putative","protein_coding"
"Bradi5g13467","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Bradi5g14660","No alias","Brachypodium distachyon","cell division cycle 48B","protein_coding"
"Bradi5g18710","No alias","Brachypodium distachyon","replication factor C 2","protein_coding"
"Bradi5g21890","No alias","Brachypodium distachyon","peroxin 6","protein_coding"
"Bradi5g24590","No alias","Brachypodium distachyon","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Brara.A00229.1","No alias","Brassica rapa","regulatory protein *(SBA) of mitochondrial nucleoid organization","protein_coding"
"Brara.A00719.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A00819.1","No alias","Brassica rapa","regulatory component *(RPT2) of 26S proteasome","protein_coding"
"Brara.A01399.1","No alias","Brassica rapa","component *(FtsHi) of protein translocation ATPase motor complex","protein_coding"
"Brara.A01475.1","No alias","Brassica rapa","meiotic crossover pachytene checkpoint protein *(PCH2/CRC1)","protein_coding"
"Brara.A01578.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A01748.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A01772.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A01933.1","No alias","Brassica rapa","EC_3.6 hydrolase acting on acid anhydride & regulatory ATPase *(NSF/SEC18)","protein_coding"
"Brara.A02112.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A02252.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A02432.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A02855.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.A03507.1","No alias","Brassica rapa","platform ATPase CDC48","protein_coding"
"Brara.A03696.1","No alias","Brassica rapa","LON-type protease","protein_coding"
"Brara.A03714.1","No alias","Brassica rapa","LON-type protease","protein_coding"
"Brara.A03715.1","No alias","Brassica rapa","regulatory component *(RPT5) of 26S proteasome","protein_coding"
"Brara.A03846.1","No alias","Brassica rapa","regulatory protein *(SBA) of mitochondrial nucleoid organization","protein_coding"
"Brara.B00372.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.B00602.1","No alias","Brassica rapa","organellar chaperone *(Clp-p/Clp-m)","protein_coding"
"Brara.B00686.1","No alias","Brassica rapa","regulatory protein *(SBA) of mitochondrial nucleoid organization","protein_coding"
"Brara.B00729.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.B00858.1","No alias","Brassica rapa","regulatory component *(RPT6) of 26S proteasome","protein_coding"
"Brara.B00947.1","No alias","Brassica rapa","component *(RFC1) of PCNA sliding clamp loader complex","protein_coding"
"Brara.B01156.1","No alias","Brassica rapa","regulatory component *(RPT3) of 26S proteasome","protein_coding"
"Brara.B01469.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.B02160.1","No alias","Brassica rapa","component *(RFC5) of PCNA sliding clamp loader complex","protein_coding"
"Brara.B02239.1","No alias","Brassica rapa","regulatory component *(RPT4) of 26S proteasome","protein_coding"
"Brara.B02240.1","No alias","Brassica rapa","regulatory component *(RPT4) of 26S proteasome","protein_coding"
"Brara.B02489.1","No alias","Brassica rapa","regulatory component *(RPT4) of 26S proteasome","protein_coding"
"Brara.B02506.1","No alias","Brassica rapa","catalytic component of Katanin ATP-dependent microtubule severing complex & EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Brara.B02612.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.B02651.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.B03272.1","No alias","Brassica rapa","EC_3.6 hydrolase acting on acid anhydride & ATPase component *(FIGL1) of FIGL1-FLIP meiotic crossover regulator complex","protein_coding"
"Brara.B03332.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.B03573.1","No alias","Brassica rapa","LON-type protease","protein_coding"
"Brara.C00106.1","No alias","Brassica rapa","platform ATPase CDC48","protein_coding"
"Brara.C00779.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.C00904.1","No alias","Brassica rapa","regulatory component *(RPT6) of 26S proteasome","protein_coding"
"Brara.C01146.1","No alias","Brassica rapa","regulatory component *(RPT3) of 26S proteasome","protein_coding"
"Brara.C01191.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.C01386.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.C01395.1","No alias","Brassica rapa","unfoldase component *(ClpX) of mitochondrion Clp-type protease complex","protein_coding"
"Brara.C01417.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.C01497.1","No alias","Brassica rapa","chaperone component *(ClpD) of chloroplast Clp-type protease complex","protein_coding"
"Brara.C01504.1","No alias","Brassica rapa","chaperone component *(ClpC) of chloroplast Clp-type protease complex","protein_coding"
"Brara.C01596.1","No alias","Brassica rapa","platform ATPase CDC48","protein_coding"
"Brara.C01746.1","No alias","Brassica rapa","EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Brara.C02027.1","No alias","Brassica rapa","ATP-dependent activase involved in RuBisCo regulation","protein_coding"
"Brara.C02418.1","No alias","Brassica rapa","ATPase component *(VPS4/SKD1) of VPS4-VTA1 ESCRT-disassembly complex","protein_coding"
"Brara.C02741.1","No alias","Brassica rapa","EC_3.6 hydrolase acting on acid anhydride & regulatory ATPase *(NSF/SEC18)","protein_coding"
"Brara.C02807.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.C02937.1","No alias","Brassica rapa","platform ATPase CDC48","protein_coding"
"Brara.C03107.1","No alias","Brassica rapa","regulatory component *(RPT5) of 26S proteasome","protein_coding"
"Brara.C03257.1","No alias","Brassica rapa","platform ATPase CDC48","protein_coding"
"Brara.C03557.1","No alias","Brassica rapa","component *(BRP1) of anti-silencing regulator complex & component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination heterodimer","protein_coding"
"Brara.C04341.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.D01008.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.D01370.1","No alias","Brassica rapa","platform ATPase CDC48","protein_coding"
"Brara.D01521.1","No alias","Brassica rapa","organellar chaperone *(Clp-p/Clp-m)","protein_coding"
"Brara.D01584.1","No alias","Brassica rapa","ATP-dependent metalloprotease *(FtsH4/11)","protein_coding"
"Brara.D01742.1","No alias","Brassica rapa","component *(Fts3/10) of FtsH3/10 matrix-AAA protease heterodimers","protein_coding"
"Brara.D02409.1","No alias","Brassica rapa","ATP-dependent activase involved in RuBisCo regulation","protein_coding"
"Brara.D02657.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.D02658.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.D02746.1","No alias","Brassica rapa","EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Brara.E00117.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.E00511.1","No alias","Brassica rapa","EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Brara.E00567.1","No alias","Brassica rapa","strigolactone signal modulator *(SMXL)","protein_coding"
"Brara.E00605.1","No alias","Brassica rapa","ATP-dependent activase involved in RuBisCo regulation","protein_coding"
"Brara.E00609.1","No alias","Brassica rapa","regulatory component *(RPT1) of 26S proteasome","protein_coding"
"Brara.E00970.1","No alias","Brassica rapa","EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Brara.E01263.1","No alias","Brassica rapa","protease *(FtsH2/8) & EXECUTER-cleavage protease *(FtsH2) & component *(FtsH1/2/5/6/8) of FtsH plastidial protease complexes","protein_coding"
"Brara.E01536.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.E01865.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.E02526.1","No alias","Brassica rapa","component *(FtsHi) of protein translocation ATPase motor complex","protein_coding"
"Brara.E03061.1","No alias","Brassica rapa","platform ATPase CDC48","protein_coding"
"Brara.E03360.1","No alias","Brassica rapa","regulatory component *(RPT5) of 26S proteasome","protein_coding"
"Brara.E03454.1","No alias","Brassica rapa","component *(FtsHi) of protein translocation ATPase motor complex","protein_coding"
"Brara.E03540.1","No alias","Brassica rapa","regulatory protein *(SBA) of mitochondrial nucleoid organization","protein_coding"
"Brara.E03580.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F00097.1","No alias","Brassica rapa","regulatory component *(RPT1) of 26S proteasome","protein_coding"
"Brara.F00273.1","No alias","Brassica rapa","LON-type protease","protein_coding"
"Brara.F00274.1","No alias","Brassica rapa","LON-type protease","protein_coding"
"Brara.F00275.1","No alias","Brassica rapa","LON-type protease","protein_coding"
"Brara.F00512.1","No alias","Brassica rapa","ATPase component *(VPS4/SKD1) of VPS4-VTA1 ESCRT-disassembly complex & EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Brara.F01564.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F01646.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F01773.1","No alias","Brassica rapa","component *(FtsH7/9) of FtsH plastidial protease complexes","protein_coding"
"Brara.F02334.1","No alias","Brassica rapa","component *(FtsHi) of protein translocation ATPase motor complex","protein_coding"
"Brara.F02508.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F02824.1","No alias","Brassica rapa","LON-type protease","protein_coding"
"Brara.F03139.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F03140.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F03141.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F03142.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F03143.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.F03363.1","No alias","Brassica rapa","platform ATPase CDC48","protein_coding"
"Brara.F03505.1","No alias","Brassica rapa","component *(ORC4) of origin recognition complex","protein_coding"
"Brara.F03574.1","No alias","Brassica rapa","LON-type protease","protein_coding"
"Brara.F03827.1","No alias","Brassica rapa","regulatory component *(RPT4) of 26S proteasome","protein_coding"
"Brara.G00631.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.G00864.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.G00890.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.G01321.1","No alias","Brassica rapa","ATPase component *(VPS4/SKD1) of VPS4-VTA1 ESCRT-disassembly complex & EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Brara.G01418.1","No alias","Brassica rapa","component *(Fts3/10) of FtsH3/10 matrix-AAA protease heterodimers","protein_coding"
"Brara.G01576.1","No alias","Brassica rapa","platform ATPase CDC48","protein_coding"
"Brara.G02027.1","No alias","Brassica rapa","catalytic component of Katanin ATP-dependent microtubule severing complex & EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Brara.G02074.1","No alias","Brassica rapa","component *(FtsH12) of protein translocation ATPase motor complex","protein_coding"
"Brara.G02147.1","No alias","Brassica rapa","component *(RFC5) of PCNA sliding clamp loader complex","protein_coding"
"Brara.G02280.1","No alias","Brassica rapa","cytosolic chaperone *(Hsp101)","protein_coding"
"Brara.G02728.1","No alias","Brassica rapa","protease *(FtsH1/5) & component *(FtsH1/2/5/6/8) of FtsH plastidial protease complexes","protein_coding"
"Brara.G03189.1","No alias","Brassica rapa","cytosolic chaperone *(Hsp101)","protein_coding"
"Brara.G03289.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.H00118.1","No alias","Brassica rapa","regulatory component *(RPT1) of 26S proteasome","protein_coding"
"Brara.H00258.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.H01457.1","No alias","Brassica rapa","regulatory component *(RPT2) of 26S proteasome","protein_coding"
"Brara.H02273.1","No alias","Brassica rapa","component *(RFC4) of PCNA sliding clamp loader complex","protein_coding"
"Brara.H02960.1","No alias","Brassica rapa","protease *(FtsH2/8) & EXECUTER-cleavage protease *(FtsH2) & component *(FtsH1/2/5/6/8) of FtsH plastidial protease complexes","protein_coding"
"Brara.I00160.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I00315.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I00316.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I01069.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I01077.1","No alias","Brassica rapa","regulatory protein *(SBA) of mitochondrial nucleoid organization","protein_coding"
"Brara.I01216.1","No alias","Brassica rapa","component *(RFC2) of PCNA sliding clamp loader complex","protein_coding"
"Brara.I01352.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I02100.1","No alias","Brassica rapa","platform ATPase CDC48","protein_coding"
"Brara.I02131.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I02193.1","No alias","Brassica rapa","EC_3.6 hydrolase acting on acid anhydride & regulatory ATPase *(NSF/SEC18)","protein_coding"
"Brara.I02235.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I02248.1","No alias","Brassica rapa","component *(ORC1) of origin recognition complex","protein_coding"
"Brara.I02595.1","No alias","Brassica rapa","unfoldase component *(ClpX) of mitochondrion Clp-type protease complex","protein_coding"
"Brara.I03433.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I03434.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I03613.1","No alias","Brassica rapa","platform ATPase CDC48","protein_coding"
"Brara.I03898.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I04268.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.I04403.1","No alias","Brassica rapa","ATP-dependent metalloprotease *(FtsH4/11)","protein_coding"
"Brara.I04445.1","No alias","Brassica rapa","organellar chaperone *(Clp-p/Clp-m)","protein_coding"
"Brara.I05355.1","No alias","Brassica rapa","component *(Fts3/10) of FtsH3/10 matrix-AAA protease heterodimers","protein_coding"
"Brara.I05432.1","No alias","Brassica rapa","component *(BRAT1) of anti-silencing regulator complex","protein_coding"
"Brara.I05549.1","No alias","Brassica rapa","component *(Pex6) of Pex1-Pex6 subcomplex","protein_coding"
"Brara.I05554.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.J00140.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.J00151.1","No alias","Brassica rapa","component *(Pex6) of Pex1-Pex6 subcomplex","protein_coding"
"Brara.J00285.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.J00408.1","No alias","Brassica rapa","component *(BRAT1) of anti-silencing regulator complex","protein_coding"
"Brara.J00441.1","No alias","Brassica rapa","protease *(FtsH2/8) & EXECUTER-cleavage protease *(FtsH2) & component *(FtsH1/2/5/6/8) of FtsH plastidial protease complexes","protein_coding"
"Brara.J00672.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.J00800.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.J00838.1","No alias","Brassica rapa","unfoldase component *(ClpX) of mitochondrion Clp-type protease complex","protein_coding"
"Brara.J00852.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.J00865.1","No alias","Brassica rapa","unfoldase component *(ClpX) of mitochondrion Clp-type protease complex","protein_coding"
"Brara.J01164.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.J01217.1","No alias","Brassica rapa","regulatory component *(RPT3) of 26S proteasome","protein_coding"
"Brara.J01267.1","No alias","Brassica rapa","component *(FtsH7/9) of FtsH plastidial protease complexes","protein_coding"
"Brara.J01595.1","No alias","Brassica rapa","regulatory component *(RPT6) of 26S proteasome","protein_coding"
"Brara.J01782.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.J01839.1","No alias","Brassica rapa","regulatory protein *(SBA) of mitochondrial nucleoid organization","protein_coding"
"Brara.J01953.1","No alias","Brassica rapa","organellar chaperone *(Clp-p/Clp-m)","protein_coding"
"Brara.J01968.1","No alias","Brassica rapa","protease *(FtsH2/8) & EXECUTER-cleavage protease *(FtsH2) & component *(FtsH1/2/5/6/8) of FtsH plastidial protease complexes","protein_coding"
"Brara.J02284.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.J02286.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.J02426.1","No alias","Brassica rapa","component *(Pex1) of Pex1-Pex6 subcomplex","protein_coding"
"Brara.K00053.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.K00069.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.K00175.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Brara.K01012.1","No alias","Brassica rapa","Unknown function","protein_coding"
"Cre01.g019850","No alias","Chlamydomonas reinhardtii","FTSH protease 10","protein_coding"
"Cre01.g022000","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre01.g038151","No alias","Chlamydomonas reinhardtii","cell division cycle protein 48-related / CDC48-related","protein_coding"
"Cre02.g078966","No alias","Chlamydomonas reinhardtii","FTSH protease 7","protein_coding"
"Cre02.g079300","No alias","Chlamydomonas reinhardtii","AAA-type ATPase family protein","protein_coding"
"Cre02.g090850","No alias","Chlamydomonas reinhardtii","casein lytic proteinase B3","protein_coding"
"Cre02.g091400","No alias","Chlamydomonas reinhardtii","casein lytic proteinase B4","protein_coding"
"Cre02.g117150","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre02.g147850","No alias","Chlamydomonas reinhardtii","ATP-dependent Clp protease","protein_coding"
"Cre03.g144967","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre03.g201100","No alias","Chlamydomonas reinhardtii","AAA-type ATPase family protein","protein_coding"
"Cre04.g216600","No alias","Chlamydomonas reinhardtii","regulatory particle triple-A ATPase 6A","protein_coding"
"Cre04.g218900","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre04.g219000","No alias","Chlamydomonas reinhardtii","RNA helicase, putative","protein_coding"
"Cre04.g229300","No alias","Chlamydomonas reinhardtii","rubisco activase","protein_coding"
"Cre05.g234661","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre06.g251800","No alias","Chlamydomonas reinhardtii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Cre06.g256050","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre06.g258200","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre06.g259550","No alias","Chlamydomonas reinhardtii","AAA-type ATPase family protein","protein_coding"
"Cre06.g269950","No alias","Chlamydomonas reinhardtii","ATPase, AAA-type, CDC48 protein","protein_coding"
"Cre06.g281350","No alias","Chlamydomonas reinhardtii","lon protease 1","protein_coding"
"Cre06.g299200","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre06.g300450","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre07.g325762","No alias","Chlamydomonas reinhardtii","AAA-type ATPase family protein","protein_coding"
"Cre07.g329700","No alias","Chlamydomonas reinhardtii","regulatory particle AAA-ATPase 2A","protein_coding"
"Cre07.g337150","No alias","Chlamydomonas reinhardtii","replication factor C 2","protein_coding"
"Cre07.g347550","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre07.g352350","No alias","Chlamydomonas reinhardtii","FTSH protease 1","protein_coding"
"Cre09.g393950","No alias","Chlamydomonas reinhardtii","cell division protein ftsH, putative","protein_coding"
"Cre09.g398550","No alias","Chlamydomonas reinhardtii","cell division cycle 48C","protein_coding"
"Cre09.g399476","No alias","Chlamydomonas reinhardtii","AAA-type ATPase family protein","protein_coding"
"Cre09.g401182","No alias","Chlamydomonas reinhardtii","Cam interacting protein 111","protein_coding"
"Cre09.g402450","No alias","Chlamydomonas reinhardtii","regulatory particle triple-A ATPase 3","protein_coding"
"Cre10.g427600","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre10.g439150","No alias","Chlamydomonas reinhardtii","regulatory particle triple-A ATPase 5A","protein_coding"
"Cre10.g446250","No alias","Chlamydomonas reinhardtii","peroxin 6","protein_coding"
"Cre10.g446400","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre10.g451850","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre10.g455600","No alias","Chlamydomonas reinhardtii","origin recognition complex 1","protein_coding"
"Cre10.g461250","No alias","Chlamydomonas reinhardtii","AAA-type ATPase family protein","protein_coding"
"Cre10.g465550","No alias","Chlamydomonas reinhardtii","Clp ATPase","protein_coding"
"Cre11.g467575","No alias","Chlamydomonas reinhardtii","casein lytic proteinase B3","protein_coding"
"Cre11.g467644","No alias","Chlamydomonas reinhardtii","heat shock protein 101","protein_coding"
"Cre12.g485800","No alias","Chlamydomonas reinhardtii","FtsH extracellular protease family","protein_coding"
"Cre12.g488400","No alias","Chlamydomonas reinhardtii","AAA-type ATPase family protein","protein_coding"
"Cre12.g496150","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre12.g510900","No alias","Chlamydomonas reinhardtii","ATP-dependent Clp protease","protein_coding"
"Cre12.g521200","No alias","Chlamydomonas reinhardtii","replication factor C1","protein_coding"
"Cre12.g527300","No alias","Chlamydomonas reinhardtii","replication factor C subunit 3","protein_coding"
"Cre12.g533351","No alias","Chlamydomonas reinhardtii","heat shock protein 101","protein_coding"
"Cre12.g541300","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre13.g568400","No alias","Chlamydomonas reinhardtii","FTSH protease 4","protein_coding"
"Cre13.g580050","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre14.g625400","No alias","Chlamydomonas reinhardtii","regulatory particle triple-A 1A","protein_coding"
"Cre14.g625625","No alias","Chlamydomonas reinhardtii","FTSH protease 11","protein_coding"
"Cre16.g650151","No alias","Chlamydomonas reinhardtii","AAA-type ATPase family protein","protein_coding"
"Cre16.g663280","No alias","Chlamydomonas reinhardtii","ATP-dependent Clp protease","protein_coding"
"Cre16.g663350","No alias","Chlamydomonas reinhardtii","CLP protease regulatory subunit X","protein_coding"
"Cre16.g676350","No alias","Chlamydomonas reinhardtii","Cam interacting protein 111","protein_coding"
"Cre16.g676850","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre16.g679200","No alias","Chlamydomonas reinhardtii","peroxisome 1","protein_coding"
"Cre16.g686950","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre17.g700300","No alias","Chlamydomonas reinhardtii","cell division cycle 48B","protein_coding"
"Cre17.g710150","No alias","Chlamydomonas reinhardtii","AAA-type ATPase family protein","protein_coding"
"Cre17.g716450","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre17.g718950","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre17.g720050","No alias","Chlamydomonas reinhardtii","FtsH extracellular protease family","protein_coding"
"Cre17.g726150","No alias","Chlamydomonas reinhardtii","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Cre17.g739752","No alias","Chlamydomonas reinhardtii","FtsH extracellular protease family","protein_coding"
"evm.model.contig_2019.1","No alias","Porphyridium purpureum","(at1g05910 : 283.0) cell division cycle protein 48-related / CDC48-related; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G15120.1); Has 67654 Blast hits to 42823 proteins in 3246 species: Archae - 1526; Bacteria - 25275; Metazoa - 14857; Fungi - 7046; Plants - 4267; Viruses - 557; Other Eukaryotes - 14126 (source: NCBI BLink). & (p54774|cdc48_soybn : 186.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 566.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2025.33","No alias","Porphyridium purpureum","(at2g18190 : 120.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to salt stress; LOCATED IN: endomembrane system; EXPRESSED IN: leaf whorl, sepal, flower, egg cell, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G18193.1); Has 21090 Blast hits to 19452 proteins in 2829 species: Archae - 1310; Bacteria - 7333; Metazoa - 3029; Fungi - 2708; Plants - 2432; Viruses - 36; Other Eukaryotes - 4242 (source: NCBI BLink). & (reliability: 240.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2057.6","No alias","Porphyridium purpureum","(at1g03000 : 327.0) Encodes an apparent ATPase similar to yeast and human protein required for peroxisomal biogenesis.  May facilitate recycling of PEX5, the peroxisomal matrix protein receptor, and thereby promote peroxisomal matrix protein import.; peroxin 6 (PEX6); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 36036 Blast hits to 31766 proteins in 3165 species: Archae - 1626; Bacteria - 13920; Metazoa - 5344; Fungi - 4031; Plants - 3389; Viruses - 33; Other Eukaryotes - 7693 (source: NCBI BLink). & (q96372|cdc48_capan : 258.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 654.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2059.27","No alias","Porphyridium purpureum","(at2g29080 : 620.0) encodes an FtsH protease that is localized to the mitochondrion; FTSH protease 3 (ftsh3); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: mitochondrion, chloroplast thylakoid membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 10 (TAIR:AT1G07510.1); Has 42068 Blast hits to 39734 proteins in 3332 species: Archae - 1581; Bacteria - 17420; Metazoa - 4814; Fungi - 3774; Plants - 3280; Viruses - 30; Other Eukaryotes - 11169 (source: NCBI BLink). & (q5z974|ftsh_orysa : 422.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 1216.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2084.10","No alias","Porphyridium purpureum","(at2g03670 : 311.0) CDC48 - like protein  AAA-type ATPaseCell. division control protein 48 homolog B; cell division cycle 48B (CDC48B); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 56751 Blast hits to 29677 proteins in 3123 species: Archae - 2145; Bacteria - 19832; Metazoa - 8766; Fungi - 6476; Plants - 5731; Viruses - 66; Other Eukaryotes - 13735 (source: NCBI BLink). & (p54774|cdc48_soybn : 302.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 622.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2096.20","No alias","Porphyridium purpureum","(at5g19990 : 619.0) 26S proteasome AAA-ATPase subunit; regulatory particle triple-A ATPase 6A (RPT6A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G20000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (o64982|prs7_prupe : 325.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Prunus persica (Peach) & (reliability: 1238.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2131.7","No alias","Porphyridium purpureum","(at5g49840 : 89.7) ATP-dependent Clp protease; FUNCTIONS IN: unfolded protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), Clp protease, ATP-binding subunit ClpX (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: ATP-dependent Clp protease (TAIR:AT1G33360.1); Has 32248 Blast hits to 28333 proteins in 3078 species: Archae - 765; Bacteria - 18641; Metazoa - 1800; Fungi - 1278; Plants - 1157; Viruses - 4; Other Eukaryotes - 8603 (source: NCBI BLink). & (reliability: 179.4) &  (original description: no original description)","protein_coding"
"evm.model.contig_2255.9","No alias","Porphyridium purpureum","(at3g24530 : 131.0) AAA-type ATPase family protein / ankyrin repeat family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Ankyrin repeat-containing domain (InterPro:IPR020683), CbxX/CfqX (InterPro:IPR000641), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 1 in Arabidopsis thaliana (TAIR:AT2G28840.1); Has 62125 Blast hits to 27268 proteins in 1602 species: Archae - 369; Bacteria - 7189; Metazoa - 29752; Fungi - 5124; Plants - 2920; Viruses - 566; Other Eukaryotes - 16205 (source: NCBI BLink). & (reliability: 262.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2343.11","No alias","Porphyridium purpureum","(at4g04180 : 239.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, flower, pedicel, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G45000.1); Has 31547 Blast hits to 29327 proteins in 3060 species: Archae - 1473; Bacteria - 12216; Metazoa - 4656; Fungi - 3754; Plants - 2675; Viruses - 24; Other Eukaryotes - 6749 (source: NCBI BLink). & (p54774|cdc48_soybn : 121.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 478.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_2412.1","No alias","Porphyridium purpureum","(at3g24530 : 95.9) AAA-type ATPase family protein / ankyrin repeat family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Ankyrin repeat-containing domain (InterPro:IPR020683), CbxX/CfqX (InterPro:IPR000641), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 1 in Arabidopsis thaliana (TAIR:AT2G28840.1); Has 62125 Blast hits to 27268 proteins in 1602 species: Archae - 369; Bacteria - 7189; Metazoa - 29752; Fungi - 5124; Plants - 2920; Viruses - 566; Other Eukaryotes - 16205 (source: NCBI BLink). & (reliability: 191.8) &  (original description: no original description)","protein_coding"
"evm.model.contig_2562.2","No alias","Porphyridium purpureum","(p93648|lonh2_maize : 671.0) Lon protease homolog 2, mitochondrial precursor (EC 3.4.21.-) - Zea mays (Maize) & (at5g26860 : 647.0) Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790).  Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells.  Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.; lon protease 1 (LON1); FUNCTIONS IN: serine-type peptidase activity, protein binding, ATP-dependent peptidase activity, ATP binding; INVOLVED IN: proteolysis; LOCATED IN: cytosol, mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Peptidase S16, active site (InterPro:IPR008268), Peptidase S16, ATP-dependent protease La (InterPro:IPR004815), Peptidase S16, lon N-terminal (InterPro:IPR003111), Peptidase S16, Lon C-terminal (InterPro:IPR008269), ATPase, AAA+ type, core (InterPro:IPR003593), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: lon protease 4 (TAIR:AT3G05790.1); Has 18238 Blast hits to 18056 proteins in 2534 species: Archae - 547; Bacteria - 9804; Metazoa - 746; Fungi - 600; Plants - 445; Viruses - 7; Other Eukaryotes - 6089 (source: NCBI BLink). & (reliability: 1294.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3397.17","No alias","Porphyridium purpureum","(at1g04730 : 120.0) Necessary for sister chromatid cohesion. Acts in synergy with ETG1.; CHROMOSOME TRANSMISSION FIDELITY 18 (CTF18); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: sister chromatid cohesion; LOCATED IN: replication fork; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: replication factor C1 (TAIR:AT5G22010.1); Has 4018 Blast hits to 4006 proteins in 709 species: Archae - 400; Bacteria - 666; Metazoa - 673; Fungi - 766; Plants - 379; Viruses - 21; Other Eukaryotes - 1113 (source: NCBI BLink). & (reliability: 240.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3402.3","No alias","Porphyridium purpureum","(at5g43010 : 595.0) 26S proteasome AAA-ATPase subunit RPT4a (RPT4a) mRNA,; regulatory particle triple-A ATPase 4A (RPT4A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, cell wall, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G45000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q41365|prs7_spiol : 325.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Spinacia oleracea (Spinach) & (reliability: 1190.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3416.1","No alias","Porphyridium purpureum","(at4g24710 : 223.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Chaperonin clpA/B (InterPro:IPR001270); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 23595 Blast hits to 21814 proteins in 2884 species: Archae - 1432; Bacteria - 8057; Metazoa - 4130; Fungi - 3211; Plants - 2291; Viruses - 16; Other Eukaryotes - 4458 (source: NCBI BLink). & (reliability: 446.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3425.3","No alias","Porphyridium purpureum","(at4g14700 : 165.0) Encodes origin of replication complex 1a subunit.The protein contains a PHD domain,binds methylated DNA and appears to function as a transcriptional activator.; origin recognition complex 1 (ORC1A); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Origin recognition complex, subunit 1 (InterPro:IPR020793), ATPase, AAA+ type, core (InterPro:IPR003593), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: origin of replication complex 1B (TAIR:AT4G12620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 330.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3431.4","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3456.7","No alias","Porphyridium purpureum","(at2g34560 : 94.7) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q96372|cdc48_capan : 85.9) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 171.8) &  (original description: no original description)","protein_coding"
"evm.model.contig_3464.1","No alias","Porphyridium purpureum","(at3g03060 : 297.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATPase activity, zinc ion binding; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Protein of unknown function DUF3523 (InterPro:IPR021911); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G16930.1); Has 38046 Blast hits to 31515 proteins in 3061 species: Archae - 1414; Bacteria - 11706; Metazoa - 8052; Fungi - 4459; Plants - 2737; Viruses - 110; Other Eukaryotes - 9568 (source: NCBI BLink). & (reliability: 594.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3497.3","No alias","Porphyridium purpureum","(at1g05910 : 434.0) cell division cycle protein 48-related / CDC48-related; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G15120.1); Has 67654 Blast hits to 42823 proteins in 3246 species: Archae - 1526; Bacteria - 25275; Metazoa - 14857; Fungi - 7046; Plants - 4267; Viruses - 557; Other Eukaryotes - 14126 (source: NCBI BLink). & (p54774|cdc48_soybn : 228.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 868.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3516.2","No alias","Porphyridium purpureum","(at1g74310 : 794.0) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101.  AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.; heat shock protein 101 (HSP101); FUNCTIONS IN: protein binding, ATPase activity, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 (TAIR:AT4G14670.1); Has 27671 Blast hits to 24472 proteins in 3146 species: Archae - 360; Bacteria - 17866; Metazoa - 1124; Fungi - 430; Plants - 707; Viruses - 13; Other Eukaryotes - 7171 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 788.0) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 1588.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3524.13","No alias","Porphyridium purpureum","(at2g27600 : 342.0) Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog.  Localized to the cytoplasm and to multivesicular endosomes.  Involved in multivesicular endosome function.; SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1 (SKD1); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: vesicle-mediated transport, endosome organization; LOCATED IN: cytoplasm, multivesicular body; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1); Has 30691 Blast hits to 28172 proteins in 3117 species: Archae - 1476; Bacteria - 10868; Metazoa - 5113; Fungi - 3519; Plants - 2854; Viruses - 27; Other Eukaryotes - 6834 (source: NCBI BLink). & (q96372|cdc48_capan : 149.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 684.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3546.2","No alias","Porphyridium purpureum","(at4g27680 : 237.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G53540.1); Has 30260 Blast hits to 27737 proteins in 3108 species: Archae - 1486; Bacteria - 10702; Metazoa - 4856; Fungi - 3534; Plants - 2690; Viruses - 34; Other Eukaryotes - 6958 (source: NCBI BLink). & (q96372|cdc48_capan : 152.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 474.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3601.11","No alias","Porphyridium purpureum","(o23894|prs6a_bracm : 588.0) 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) - Brassica campestris (Field mustard) & (at3g05530 : 586.0) Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle.  Essential for gametophyte development.  In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b.  RPT5a and RPT5b show accession-dependent functional redundancy.  In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.; regulatory particle triple-A ATPase 5A (RPT5A); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: 26S proteasome AAA-ATPase subunit RPT5B (TAIR:AT1G09100.1); Has 33265 Blast hits to 30927 proteins in 3145 species: Archae - 1437; Bacteria - 12044; Metazoa - 4947; Fungi - 3672; Plants - 3322; Viruses - 56; Other Eukaryotes - 7787 (source: NCBI BLink). & (reliability: 1172.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3646.5","No alias","Porphyridium purpureum","(at1g21690 : 280.0) embryo defective 1968 (EMB1968); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), Replication factor C (InterPro:IPR013748); BEST Arabidopsis thaliana protein match is: replication factor C 2 (TAIR:AT1G63160.1). & (gnl|cdd|68872 : 87.0) no description available & (reliability: 560.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3677.4","No alias","Porphyridium purpureum","(at1g63160 : 383.0) replication factor C 2 (RFC2); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA)  (TAIR:AT1G21690.1); Has 17520 Blast hits to 17472 proteins in 2840 species: Archae - 620; Bacteria - 9832; Metazoa - 859; Fungi - 958; Plants - 372; Viruses - 89; Other Eukaryotes - 4790 (source: NCBI BLink). & (reliability: 766.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3695.3","No alias","Porphyridium purpureum","(at5g58290 : 613.0) 26S proteasome AAA-ATPase subunit RPT3 (RPT3) mRNA,; regulatory particle triple-A ATPase 3 (RPT3); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, cell wall, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle AAA-ATPase 2A (TAIR:AT4G29040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p54778|prs6b_soltu : 610.0) 26S protease regulatory subunit 6B homolog - Solanum tuberosum (Potato) & (reliability: 1226.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3745.1","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_3817.1","No alias","Porphyridium purpureum","(q9fxt9|prs7_orysa : 692.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Oryza sativa (Rice) & (at1g53750 : 684.0) 26S proteasome AAA-ATPase subunit RPT1a (RPT1a) mRNA,; regulatory particle triple-A 1A (RPT1A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (TAIR:AT1G53780.2); Has 30646 Blast hits to 28391 proteins in 3108 species: Archae - 1452; Bacteria - 10350; Metazoa - 4866; Fungi - 3564; Plants - 3128; Viruses - 30; Other Eukaryotes - 7256 (source: NCBI BLink). & (reliability: 1368.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_3833.1","No alias","Porphyridium purpureum","(at4g29040 : 350.0) 26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA,; regulatory particle AAA-ATPase 2A (RPT2a); FUNCTIONS IN: ATPase activity; INVOLVED IN: in 17 processes; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G20140.1); Has 31112 Blast hits to 28760 proteins in 3112 species: Archae - 1431; Bacteria - 10308; Metazoa - 4877; Fungi - 3744; Plants - 3214; Viruses - 41; Other Eukaryotes - 7497 (source: NCBI BLink). & (p46466|prs4_orysa : 335.0) 26S protease regulatory subunit 4 homolog (TAT-binding protein homolog 2) - Oryza sativa (Rice) & (reliability: 700.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4400.17","No alias","Porphyridium purpureum","(at1g77470 : 290.0) Encodes a protein with high homology to the Replication Factor C, Subunit 3 (RFC3) of yeast and other eukaryotes. rfc3 mutants are hypersensitive to salicylic acid and exhibit enhanced induction of PR genes and resistance against virulent oomycete Hyaloperonospora arabidopsidis Noco2. The enhanced pathogen resistance in the mutant is NPR1-independent.; replication factor C subunit 3 (RFC3); FUNCTIONS IN: in 6 functions; INVOLVED IN: negative regulation of defense response; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA)  (TAIR:AT1G21690.1); Has 17584 Blast hits to 17541 proteins in 2810 species: Archae - 637; Bacteria - 9895; Metazoa - 902; Fungi - 991; Plants - 392; Viruses - 88; Other Eukaryotes - 4679 (source: NCBI BLink). & (reliability: 580.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_441.2","No alias","Porphyridium purpureum","(at2g03670 : 104.0) CDC48 - like protein  AAA-type ATPaseCell. division control protein 48 homolog B; cell division cycle 48B (CDC48B); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 56751 Blast hits to 29677 proteins in 3123 species: Archae - 2145; Bacteria - 19832; Metazoa - 8766; Fungi - 6476; Plants - 5731; Viruses - 66; Other Eukaryotes - 13735 (source: NCBI BLink). & (p54774|cdc48_soybn : 95.9) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 208.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4435.8","No alias","Porphyridium purpureum","(at5g15450 : 745.0) Encodes a chloroplast-targeted Hsp101 homologue.  Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring thermotolerance to chloroplasts during heat stress.  APG6 is constitutively expressed in the root tips, the organ boundary region, the reproductive tissues of mature plants where plastids exist as proplastids, and slightly in the stems and leaves.  APG6 expression is upregulated in response to heat shock in various organs, but not in response to other abiotic stresses.  Apg6 mutants have a pale-green phenotype.; casein lytic proteinase B3 (CLPB3); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: chloroplast organization, response to heat; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpB (InterPro:IPR017730), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B4 (TAIR:AT2G25140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 709.0) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 1490.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4437.1","No alias","Porphyridium purpureum","(at1g07510 : 528.0) encodes an FtsH protease that is localized to the mitochondrion; FTSH protease 10 (ftsh10); FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: mitochondrion, chloroplast thylakoid membrane, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 3 (TAIR:AT2G29080.1); Has 37747 Blast hits to 35440 proteins in 3262 species: Archae - 1533; Bacteria - 14237; Metazoa - 4767; Fungi - 3643; Plants - 3223; Viruses - 27; Other Eukaryotes - 10317 (source: NCBI BLink). & (q5z974|ftsh_orysa : 388.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (gnl|cdd|68872 : 100.0) no description available & (reliability: 1056.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4450.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_4461.7","No alias","Porphyridium purpureum","(at5g22010 : 331.0) replication factor C1 (RFC1); FUNCTIONS IN: DNA clamp loader activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex, intracellular; CONTAINS InterPro DOMAIN/s: DNA replication factor RFC1, C-terminal (InterPro:IPR013725), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA replication factor C, large subunit (InterPro:IPR012178), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G04730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 662.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4489.5","No alias","Porphyridium purpureum","(p54774|cdc48_soybn : 1180.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 1177.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 2354.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_454.19","No alias","Porphyridium purpureum","(at3g27120 : 276.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27130.1); Has 33109 Blast hits to 30842 proteins in 3139 species: Archae - 1459; Bacteria - 13342; Metazoa - 4781; Fungi - 3652; Plants - 2738; Viruses - 26; Other Eukaryotes - 7111 (source: NCBI BLink). & (p54774|cdc48_soybn : 122.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (gnl|cdd|68872 : 94.0) no description available & (reliability: 518.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_4616.1","No alias","Porphyridium purpureum","(at4g29040 : 309.0) 26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA,; regulatory particle AAA-ATPase 2A (RPT2a); FUNCTIONS IN: ATPase activity; INVOLVED IN: in 17 processes; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G20140.1); Has 31112 Blast hits to 28760 proteins in 3112 species: Archae - 1431; Bacteria - 10308; Metazoa - 4877; Fungi - 3744; Plants - 3214; Viruses - 41; Other Eukaryotes - 7497 (source: NCBI BLink). & (p46466|prs4_orysa : 308.0) 26S protease regulatory subunit 4 homolog (TAT-binding protein homolog 2) - Oryza sativa (Rice) & (reliability: 618.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_473.4","No alias","Porphyridium purpureum","(at5g08470 : 255.0) an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals.; peroxisome 1 (PEX1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation, response to stress; LOCATED IN: peroxisome; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Aspartate decarboxylase-like fold (InterPro:IPR009010), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peroxisome biogenesis factor 1, N-terminal (InterPro:IPR015342); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 45022 Blast hits to 26157 proteins in 3042 species: Archae - 1897; Bacteria - 15808; Metazoa - 7500; Fungi - 5597; Plants - 4311; Viruses - 29; Other Eukaryotes - 9880 (source: NCBI BLink). & (p54774|cdc48_soybn : 198.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 510.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_474.1","No alias","Porphyridium purpureum","(at3g56690 : 117.0) encodes a protein similar to ATPases and binds to calmodulin in vitro. This is a single-copy gene and is expressed in all tissues examined.; Cam interacting protein 111 (CIP111); FUNCTIONS IN: ATPase activity, calmodulin binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 63578 Blast hits to 32942 proteins in 3240 species: Archae - 2541; Bacteria - 24762; Metazoa - 9322; Fungi - 6853; Plants - 5967; Viruses - 72; Other Eukaryotes - 14061 (source: NCBI BLink). & (p54774|cdc48_soybn : 110.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 234.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_477.15","No alias","Porphyridium purpureum","(at4g04910 : 586.0) N-ethylmaleimide sensitive factor; N-ethylmaleimide sensitive factor (NSF); FUNCTIONS IN: protein binding; LOCATED IN: vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30539 Blast hits to 27448 proteins in 3106 species: Archae - 1540; Bacteria - 10808; Metazoa - 4854; Fungi - 3637; Plants - 2891; Viruses - 27; Other Eukaryotes - 6782 (source: NCBI BLink). & (p54774|cdc48_soybn : 166.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1172.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_487.1","No alias","Porphyridium purpureum","(p35100|clpc_pea : 624.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (at5g50920 : 619.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1238.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_503.12","No alias","Porphyridium purpureum","(at1g50250 : 579.0) encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes.; FTSH protease 1 (FTSH1); FUNCTIONS IN: metallopeptidase activity, protein binding, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: photosystem II repair, PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid lumen, chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT5G42270.1); Has 39789 Blast hits to 37355 proteins in 3308 species: Archae - 1512; Bacteria - 16133; Metazoa - 4957; Fungi - 3666; Plants - 3305; Viruses - 34; Other Eukaryotes - 10182 (source: NCBI BLink). & (q5z974|ftsh_orysa : 578.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 1158.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_522.1","No alias","Porphyridium purpureum","(q9bae0|ftsh_medsa : 654.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Medicago sativa (Alfalfa) & (at5g42270 : 652.0) VAR1 contains a conserved motif for ATPase and a metalloprotease characteristic to FtsH proteins, and is targeted into chloroplasts. A VAR1-fusion protein synthesized in vitro exhibited ATPase activity and partial metalloprotease activity. This protein is located to the thylakoid membrane and forms a complex with VAR2. FtsH1 (VAR1) and FtsH5 are interchangeable in thylakoid membranes.; VARIEGATED 1 (VAR1); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: photoinhibition, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1304.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_531.20","No alias","Porphyridium purpureum","(at5g15450 : 999.0) Encodes a chloroplast-targeted Hsp101 homologue.  Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring thermotolerance to chloroplasts during heat stress.  APG6 is constitutively expressed in the root tips, the organ boundary region, the reproductive tissues of mature plants where plastids exist as proplastids, and slightly in the stems and leaves.  APG6 expression is upregulated in response to heat shock in various organs, but not in response to other abiotic stresses.  Apg6 mutants have a pale-green phenotype.; casein lytic proteinase B3 (CLPB3); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: chloroplast organization, response to heat; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpB (InterPro:IPR017730), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B4 (TAIR:AT2G25140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 774.0) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 1998.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_534.2","No alias","Porphyridium purpureum","(at3g01610 : 432.0) AAA-type ATPase - Over 90% homologous to CDC48a; cell division cycle 48C (CDC48C); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 65227 Blast hits to 39412 proteins in 3299 species: Archae - 1912; Bacteria - 27659; Metazoa - 8516; Fungi - 6329; Plants - 5583; Viruses - 58; Other Eukaryotes - 15170 (source: NCBI BLink). & (q96372|cdc48_capan : 262.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 864.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_547.1","No alias","Porphyridium purpureum","(at2g26140 : 618.0) encodes an FtsH protease that is localized to the mitochondrion; FTSH protease 4 (ftsh4); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: mitochondrion, plastid, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: FTSH protease 11 (TAIR:AT5G53170.1); Has 39775 Blast hits to 37259 proteins in 3240 species: Archae - 1584; Bacteria - 15744; Metazoa - 5149; Fungi - 3764; Plants - 3335; Viruses - 40; Other Eukaryotes - 10159 (source: NCBI BLink). & (q5z974|ftsh_orysa : 375.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 1236.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_562.2","No alias","Porphyridium purpureum","(at5g53350 : 303.0) CLP protease regulatory subunit CLPX mRNA, nuclear gene; CLP protease regulatory subunit X (CLPX); FUNCTIONS IN: unfolded protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), Clp protease, ATP-binding subunit ClpX (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: ATP-dependent Clp protease (TAIR:AT1G33360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (gnl|cdd|68872 : 99.7) no description available & (reliability: 606.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_577.6","No alias","Porphyridium purpureum"," no hits & (original description: no original description)","protein_coding"
"evm.model.contig_582.4","No alias","Porphyridium purpureum","(at4g27680 : 236.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G53540.1); Has 30260 Blast hits to 27737 proteins in 3108 species: Archae - 1486; Bacteria - 10702; Metazoa - 4856; Fungi - 3534; Plants - 2690; Viruses - 34; Other Eukaryotes - 6958 (source: NCBI BLink). & (p54774|cdc48_soybn : 155.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 472.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_611.19","No alias","Porphyridium purpureum","(at5g47010 : 105.0) Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb-  amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes.; LOW-LEVEL BETA-AMYLASE 1 (LBA1); FUNCTIONS IN: in 6 functions; INVOLVED IN: sugar mediated signaling pathway, RNA interference, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, response to sucrose stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), RNA helicase UPF1, UPF2-interacting domain (InterPro:IPR018999); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 9640 Blast hits to 8330 proteins in 1330 species: Archae - 182; Bacteria - 2840; Metazoa - 3001; Fungi - 1369; Plants - 807; Viruses - 148; Other Eukaryotes - 1293 (source: NCBI BLink). & (reliability: 191.0) &  (original description: no original description)","protein_coding"
"evm.model.contig_699.4","No alias","Porphyridium purpureum","(p54774|cdc48_soybn : 216.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g09840 : 214.0) Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation.; cell division cycle 48 (CDC48); FUNCTIONS IN: ATPase activity, identical protein binding; INVOLVED IN: response to cadmium ion, pollen germination, pollen tube growth, cell division, phosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66378 Blast hits to 39099 proteins in 3298 species: Archae - 1713; Bacteria - 29252; Metazoa - 8676; Fungi - 6302; Plants - 5800; Viruses - 77; Other Eukaryotes - 14558 (source: NCBI BLink). & (reliability: 404.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000042.268","No alias","Cyanophora paradoxa","(at4g24860 : 125.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, leaf whorl, sperm cell, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G62130.1); Has 36802 Blast hits to 34347 proteins in 3158 species: Archae - 1551; Bacteria - 15209; Metazoa - 4767; Fungi - 3515; Plants - 2998; Viruses - 28; Other Eukaryotes - 8734 (source: NCBI BLink). & (q96372|cdc48_capan : 118.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 250.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000042.30","No alias","Cyanophora paradoxa","(at1g63160 : 390.0) replication factor C 2 (RFC2); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA)  (TAIR:AT1G21690.1); Has 17520 Blast hits to 17472 proteins in 2840 species: Archae - 620; Bacteria - 9832; Metazoa - 859; Fungi - 958; Plants - 372; Viruses - 89; Other Eukaryotes - 4790 (source: NCBI BLink). & (reliability: 780.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000093.123","No alias","Cyanophora paradoxa","(at2g45500 : 164.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G27120.1); Has 35832 Blast hits to 33399 proteins in 3215 species: Archae - 1489; Bacteria - 15370; Metazoa - 4981; Fungi - 3599; Plants - 2905; Viruses - 24; Other Eukaryotes - 7464 (source: NCBI BLink). & (reliability: 328.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000093.169","No alias","Cyanophora paradoxa","(at3g24530 : 157.0) AAA-type ATPase family protein / ankyrin repeat family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Ankyrin repeat-containing domain (InterPro:IPR020683), CbxX/CfqX (InterPro:IPR000641), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 1 in Arabidopsis thaliana (TAIR:AT2G28840.1); Has 62125 Blast hits to 27268 proteins in 1602 species: Archae - 369; Bacteria - 7189; Metazoa - 29752; Fungi - 5124; Plants - 2920; Viruses - 566; Other Eukaryotes - 16205 (source: NCBI BLink). & (reliability: 314.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000093.212","No alias","Cyanophora paradoxa","(at2g34560 : 323.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p54774|cdc48_soybn : 179.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 646.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000113.24","No alias","Cyanophora paradoxa","(at4g04180 : 94.4) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, flower, pedicel, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G45000.1); Has 31547 Blast hits to 29327 proteins in 3060 species: Archae - 1473; Bacteria - 12216; Metazoa - 4656; Fungi - 3754; Plants - 2675; Viruses - 24; Other Eukaryotes - 6749 (source: NCBI BLink). & (reliability: 188.8) &  (original description: no original description)","protein_coding"
"evm.model.tig00000180.27","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000215.44","No alias","Cyanophora paradoxa","(at4g04180 : 84.7) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, flower, pedicel, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G45000.1); Has 31547 Blast hits to 29327 proteins in 3060 species: Archae - 1473; Bacteria - 12216; Metazoa - 4656; Fungi - 3754; Plants - 2675; Viruses - 24; Other Eukaryotes - 6749 (source: NCBI BLink). & (reliability: 169.4) &  (original description: no original description)","protein_coding"
"evm.model.tig00000215.47","No alias","Cyanophora paradoxa","(at1g50140 : 287.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G19740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 115.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 574.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000227.41","No alias","Cyanophora paradoxa","(at1g77620 : 80.9) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding; INVOLVED IN: DNA repair, cell cycle; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Checkpoint protein Rad24 (InterPro:IPR004582), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: replication factor C1 (TAIR:AT5G22010.1); Has 1511 Blast hits to 1466 proteins in 328 species: Archae - 281; Bacteria - 0; Metazoa - 363; Fungi - 421; Plants - 133; Viruses - 9; Other Eukaryotes - 304 (source: NCBI BLink). & (reliability: 161.8) &  (original description: no original description)","protein_coding"
"evm.model.tig00000269.18","No alias","Cyanophora paradoxa","(at5g52882 : 94.4) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G28000.1); Has 40812 Blast hits to 38433 proteins in 3247 species: Archae - 1565; Bacteria - 18648; Metazoa - 4821; Fungi - 3639; Plants - 3257; Viruses - 39; Other Eukaryotes - 8843 (source: NCBI BLink). & (reliability: 171.8) &  (original description: no original description)","protein_coding"
"evm.model.tig00000411.13","No alias","Cyanophora paradoxa","(at1g64110 : 103.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G28000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 206.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000411.2","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000411.24","No alias","Cyanophora paradoxa","(at4g04180 : 110.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, flower, pedicel, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G45000.1); Has 31547 Blast hits to 29327 proteins in 3060 species: Archae - 1473; Bacteria - 12216; Metazoa - 4656; Fungi - 3754; Plants - 2675; Viruses - 24; Other Eukaryotes - 6749 (source: NCBI BLink). & (reliability: 220.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000459.55","No alias","Cyanophora paradoxa","(at3g28600 : 106.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28610.1); Has 21037 Blast hits to 19726 proteins in 2862 species: Archae - 1274; Bacteria - 7399; Metazoa - 2914; Fungi - 2841; Plants - 2424; Viruses - 34; Other Eukaryotes - 4151 (source: NCBI BLink). & (reliability: 212.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000525.10","No alias","Cyanophora paradoxa","(at3g01610 : 444.0) AAA-type ATPase - Over 90% homologous to CDC48a; cell division cycle 48C (CDC48C); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 65227 Blast hits to 39412 proteins in 3299 species: Archae - 1912; Bacteria - 27659; Metazoa - 8516; Fungi - 6329; Plants - 5583; Viruses - 58; Other Eukaryotes - 15170 (source: NCBI BLink). & (q96372|cdc48_capan : 266.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 888.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000526.15","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000615.52","No alias","Cyanophora paradoxa","(at4g04180 : 104.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, flower, pedicel, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G45000.1); Has 31547 Blast hits to 29327 proteins in 3060 species: Archae - 1473; Bacteria - 12216; Metazoa - 4656; Fungi - 3754; Plants - 2675; Viruses - 24; Other Eukaryotes - 6749 (source: NCBI BLink). & (reliability: 208.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000655.28","No alias","Cyanophora paradoxa","(at5g50920 : 1134.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p35100|clpc_pea : 1121.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (reliability: 2268.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000655.31","No alias","Cyanophora paradoxa","(at3g19740 : 192.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G50140.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 118.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 346.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000655.32","No alias","Cyanophora paradoxa","(at4g15570 : 413.0) Similar to yeast Sen1 (splicing endonuclease 1)helicase protein. Involved in female gametophyte development.; MAGATAMA 3 (MAA3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen-pistil interaction, pollen tube guidance, embryo sac development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G16800.1); Has 6636 Blast hits to 6003 proteins in 1303 species: Archae - 237; Bacteria - 1922; Metazoa - 1300; Fungi - 1113; Plants - 639; Viruses - 442; Other Eukaryotes - 983 (source: NCBI BLink). & (reliability: 826.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000658.2","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000704.23","No alias","Cyanophora paradoxa","(at1g50250 : 325.0) encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes.; FTSH protease 1 (FTSH1); FUNCTIONS IN: metallopeptidase activity, protein binding, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: photosystem II repair, PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid lumen, chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT5G42270.1); Has 39789 Blast hits to 37355 proteins in 3308 species: Archae - 1512; Bacteria - 16133; Metazoa - 4957; Fungi - 3666; Plants - 3305; Viruses - 34; Other Eukaryotes - 10182 (source: NCBI BLink). & (q9bae0|ftsh_medsa : 323.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Medicago sativa (Alfalfa) & (reliability: 650.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000718.6","No alias","Cyanophora paradoxa","(at1g45000 : 537.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: proteasome complex, plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A ATPase 4A (TAIR:AT5G43010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p46466|prs4_orysa : 293.0) 26S protease regulatory subunit 4 homolog (TAT-binding protein homolog 2) - Oryza sativa (Rice) & (reliability: 1074.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000737.5","No alias","Cyanophora paradoxa","(at4g12620 : 196.0) Origin Recognition Complex subunit 1b. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with ORC2 and ORC5. Highly expressed in proliferating cells. Expression levels are independent of light regime.; origin of replication complex 1B (ORC1B); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Origin recognition complex, subunit 1 (InterPro:IPR020793), ATPase, AAA+ type, core (InterPro:IPR003593), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: origin recognition complex 1 (TAIR:AT4G14700.1); Has 5914 Blast hits to 5512 proteins in 383 species: Archae - 477; Bacteria - 4; Metazoa - 3209; Fungi - 806; Plants - 927; Viruses - 0; Other Eukaryotes - 491 (source: NCBI BLink). & (reliability: 392.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000769.10","No alias","Cyanophora paradoxa","(at4g02480 : 337.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G02890.1); Has 36961 Blast hits to 32268 proteins in 3150 species: Archae - 1594; Bacteria - 13825; Metazoa - 4872; Fungi - 3636; Plants - 2887; Viruses - 35; Other Eukaryotes - 10112 (source: NCBI BLink). & (q96372|cdc48_capan : 128.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 674.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000792.28","No alias","Cyanophora paradoxa","(at5g19990 : 630.0) 26S proteasome AAA-ATPase subunit; regulatory particle triple-A ATPase 6A (RPT6A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G20000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p46466|prs4_orysa : 336.0) 26S protease regulatory subunit 4 homolog (TAT-binding protein homolog 2) - Oryza sativa (Rice) & (reliability: 1260.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000893.7","No alias","Cyanophora paradoxa","(at5g53350 : 159.0) CLP protease regulatory subunit CLPX mRNA, nuclear gene; CLP protease regulatory subunit X (CLPX); FUNCTIONS IN: unfolded protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), Clp protease, ATP-binding subunit ClpX (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: ATP-dependent Clp protease (TAIR:AT1G33360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 318.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00000985.6","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00000989.11","No alias","Cyanophora paradoxa","(at5g53540 : 156.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G27680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p54774|cdc48_soybn : 98.6) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 308.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001042.14","No alias","Cyanophora paradoxa","(at1g05910 : 332.0) cell division cycle protein 48-related / CDC48-related; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G15120.1); Has 67654 Blast hits to 42823 proteins in 3246 species: Archae - 1526; Bacteria - 25275; Metazoa - 14857; Fungi - 7046; Plants - 4267; Viruses - 557; Other Eukaryotes - 14126 (source: NCBI BLink). & (p54774|cdc48_soybn : 130.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 664.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001042.6","No alias","Cyanophora paradoxa","(at4g29040 : 713.0) 26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA,; regulatory particle AAA-ATPase 2A (RPT2a); FUNCTIONS IN: ATPase activity; INVOLVED IN: in 17 processes; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G20140.1); Has 31112 Blast hits to 28760 proteins in 3112 species: Archae - 1431; Bacteria - 10308; Metazoa - 4877; Fungi - 3744; Plants - 3214; Viruses - 41; Other Eukaryotes - 7497 (source: NCBI BLink). & (p46466|prs4_orysa : 696.0) 26S protease regulatory subunit 4 homolog (TAT-binding protein homolog 2) - Oryza sativa (Rice) & (reliability: 1426.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001085.3","No alias","Cyanophora paradoxa","(at1g77470 : 355.0) Encodes a protein with high homology to the Replication Factor C, Subunit 3 (RFC3) of yeast and other eukaryotes. rfc3 mutants are hypersensitive to salicylic acid and exhibit enhanced induction of PR genes and resistance against virulent oomycete Hyaloperonospora arabidopsidis Noco2. The enhanced pathogen resistance in the mutant is NPR1-independent.; replication factor C subunit 3 (RFC3); FUNCTIONS IN: in 6 functions; INVOLVED IN: negative regulation of defense response; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA)  (TAIR:AT1G21690.1); Has 17584 Blast hits to 17541 proteins in 2810 species: Archae - 637; Bacteria - 9895; Metazoa - 902; Fungi - 991; Plants - 392; Viruses - 88; Other Eukaryotes - 4679 (source: NCBI BLink). & (reliability: 710.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001187.20","No alias","Cyanophora paradoxa","(p46465|prs6a_orysa : 599.0) 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) - Oryza sativa (Rice) & (at3g05530 : 590.0) Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle.  Essential for gametophyte development.  In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b.  RPT5a and RPT5b show accession-dependent functional redundancy.  In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.; regulatory particle triple-A ATPase 5A (RPT5A); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: 26S proteasome AAA-ATPase subunit RPT5B (TAIR:AT1G09100.1); Has 33265 Blast hits to 30927 proteins in 3145 species: Archae - 1437; Bacteria - 12044; Metazoa - 4947; Fungi - 3672; Plants - 3322; Viruses - 56; Other Eukaryotes - 7787 (source: NCBI BLink). & (reliability: 1180.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001229.23","No alias","Cyanophora paradoxa","(at1g80350 : 151.0) encodes a p60 katanin protein that is expressed throughout  the plant.  Required for the specification of cell fates from early in development (in the meristem)  through differentiation and for normal postmitotic organization of cortical microtubules into transverse arrays in root epidermis cells. Mutants display cytoskeletal defects.; ECTOPIC ROOT HAIR 3 (ERH3); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: trichome branching, cortical microtubule organization, multidimensional cell growth, plant-type cell wall biogenesis, microtubule cytoskeleton organization; LOCATED IN: katanin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G34560.1); Has 31677 Blast hits to 29370 proteins in 3124 species: Archae - 1478; Bacteria - 12054; Metazoa - 4742; Fungi - 3292; Plants - 2928; Viruses - 23; Other Eukaryotes - 7160 (source: NCBI BLink). & (reliability: 302.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001302.4","No alias","Cyanophora paradoxa","(at4g24710 : 354.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Chaperonin clpA/B (InterPro:IPR001270); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 23595 Blast hits to 21814 proteins in 2884 species: Archae - 1432; Bacteria - 8057; Metazoa - 4130; Fungi - 3211; Plants - 2291; Viruses - 16; Other Eukaryotes - 4458 (source: NCBI BLink). & (reliability: 708.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001333.30","No alias","Cyanophora paradoxa","(at1g04730 : 146.0) Necessary for sister chromatid cohesion. Acts in synergy with ETG1.; CHROMOSOME TRANSMISSION FIDELITY 18 (CTF18); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: sister chromatid cohesion; LOCATED IN: replication fork; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: replication factor C1 (TAIR:AT5G22010.1); Has 4018 Blast hits to 4006 proteins in 709 species: Archae - 400; Bacteria - 666; Metazoa - 673; Fungi - 766; Plants - 379; Viruses - 21; Other Eukaryotes - 1113 (source: NCBI BLink). & (reliability: 292.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001416.4","No alias","Cyanophora paradoxa","(at5g15450 : 811.0) Encodes a chloroplast-targeted Hsp101 homologue.  Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring thermotolerance to chloroplasts during heat stress.  APG6 is constitutively expressed in the root tips, the organ boundary region, the reproductive tissues of mature plants where plastids exist as proplastids, and slightly in the stems and leaves.  APG6 expression is upregulated in response to heat shock in various organs, but not in response to other abiotic stresses.  Apg6 mutants have a pale-green phenotype.; casein lytic proteinase B3 (CLPB3); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: chloroplast organization, response to heat; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpB (InterPro:IPR017730), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B4 (TAIR:AT2G25140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 599.0) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 1622.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001416.8","No alias","Cyanophora paradoxa","(at3g48870 : 359.0) Encodes a nuclear encoded protein with similarity to Clpa regulatory subunit of CLP protease complex. The protein is localized to the chloroplast stroma.  May function redundantly with TIC complex  in chloroplast protein import.; HSP93-III; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein import into chloroplast stroma, chloroplast organization; LOCATED IN: mitochondrion, chloroplast, chloroplast stroma, Tic complex; EXPRESSED IN: guard cell; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1). & (p35100|clpc_pea : 349.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (reliability: 718.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00001600.9","No alias","Cyanophora paradoxa","(at2g26140 : 570.0) encodes an FtsH protease that is localized to the mitochondrion; FTSH protease 4 (ftsh4); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: mitochondrion, plastid, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: FTSH protease 11 (TAIR:AT5G53170.1); Has 39775 Blast hits to 37259 proteins in 3240 species: Archae - 1584; Bacteria - 15744; Metazoa - 5149; Fungi - 3764; Plants - 3335; Viruses - 40; Other Eukaryotes - 10159 (source: NCBI BLink). & (q5z974|ftsh_orysa : 374.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 1140.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020563.86","No alias","Cyanophora paradoxa","(at5g50920 : 990.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p35100|clpc_pea : 984.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (reliability: 1980.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020592.17","No alias","Cyanophora paradoxa","(at4g04910 : 270.0) N-ethylmaleimide sensitive factor; N-ethylmaleimide sensitive factor (NSF); FUNCTIONS IN: protein binding; LOCATED IN: vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30539 Blast hits to 27448 proteins in 3106 species: Archae - 1540; Bacteria - 10808; Metazoa - 4854; Fungi - 3637; Plants - 2891; Viruses - 27; Other Eukaryotes - 6782 (source: NCBI BLink). & (q96372|cdc48_capan : 116.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 540.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020614.2","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020801.51","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020830.28","No alias","Cyanophora paradoxa","(at1g80350 : 148.0) encodes a p60 katanin protein that is expressed throughout  the plant.  Required for the specification of cell fates from early in development (in the meristem)  through differentiation and for normal postmitotic organization of cortical microtubules into transverse arrays in root epidermis cells. Mutants display cytoskeletal defects.; ECTOPIC ROOT HAIR 3 (ERH3); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: trichome branching, cortical microtubule organization, multidimensional cell growth, plant-type cell wall biogenesis, microtubule cytoskeleton organization; LOCATED IN: katanin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G34560.1); Has 31677 Blast hits to 29370 proteins in 3124 species: Archae - 1478; Bacteria - 12054; Metazoa - 4742; Fungi - 3292; Plants - 2928; Viruses - 23; Other Eukaryotes - 7160 (source: NCBI BLink). & (reliability: 296.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020848.91","No alias","Cyanophora paradoxa","(p10871|rca_spiol : 291.0) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) - Spinacia oleracea (Spinach) & (at2g39730 : 285.0) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.; rubisco activase (RCA); FUNCTIONS IN: enzyme regulator activity, ADP binding, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to cold, response to light stimulus, defense response to bacterium; LOCATED IN: in 10 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73110.1); Has 2322 Blast hits to 2274 proteins in 510 species: Archae - 328; Bacteria - 451; Metazoa - 248; Fungi - 425; Plants - 405; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink). & (reliability: 570.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020904.92","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020911.67","No alias","Cyanophora paradoxa","(at2g27600 : 97.1) Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog.  Localized to the cytoplasm and to multivesicular endosomes.  Involved in multivesicular endosome function.; SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1 (SKD1); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: vesicle-mediated transport, endosome organization; LOCATED IN: cytoplasm, multivesicular body; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1); Has 30691 Blast hits to 28172 proteins in 3117 species: Archae - 1476; Bacteria - 10868; Metazoa - 5113; Fungi - 3519; Plants - 2854; Viruses - 27; Other Eukaryotes - 6834 (source: NCBI BLink). & (reliability: 194.2) &  (original description: no original description)","protein_coding"
"evm.model.tig00020930.23","No alias","Cyanophora paradoxa","(at1g64110 : 130.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G28000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q96372|cdc48_capan : 113.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 260.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00020961.67","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020961.68","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00020996.22","No alias","Cyanophora paradoxa","(at5g15450 : 496.0) Encodes a chloroplast-targeted Hsp101 homologue.  Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring thermotolerance to chloroplasts during heat stress.  APG6 is constitutively expressed in the root tips, the organ boundary region, the reproductive tissues of mature plants where plastids exist as proplastids, and slightly in the stems and leaves.  APG6 expression is upregulated in response to heat shock in various organs, but not in response to other abiotic stresses.  Apg6 mutants have a pale-green phenotype.; casein lytic proteinase B3 (CLPB3); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: chloroplast organization, response to heat; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpB (InterPro:IPR017730), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B4 (TAIR:AT2G25140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 490.0) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 992.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021017.29","No alias","Cyanophora paradoxa","(at5g22010 : 251.0) replication factor C1 (RFC1); FUNCTIONS IN: DNA clamp loader activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex, intracellular; CONTAINS InterPro DOMAIN/s: DNA replication factor RFC1, C-terminal (InterPro:IPR013725), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA replication factor C, large subunit (InterPro:IPR012178), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G04730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 502.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021046.12","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021127.121","No alias","Cyanophora paradoxa","(at5g42270 : 463.0) VAR1 contains a conserved motif for ATPase and a metalloprotease characteristic to FtsH proteins, and is targeted into chloroplasts. A VAR1-fusion protein synthesized in vitro exhibited ATPase activity and partial metalloprotease activity. This protein is located to the thylakoid membrane and forms a complex with VAR2. FtsH1 (VAR1) and FtsH5 are interchangeable in thylakoid membranes.; VARIEGATED 1 (VAR1); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: photoinhibition, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q9bae0|ftsh_medsa : 462.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Medicago sativa (Alfalfa) & (reliability: 926.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021127.82","No alias","Cyanophora paradoxa","(at1g03000 : 177.0) Encodes an apparent ATPase similar to yeast and human protein required for peroxisomal biogenesis.  May facilitate recycling of PEX5, the peroxisomal matrix protein receptor, and thereby promote peroxisomal matrix protein import.; peroxin 6 (PEX6); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 36036 Blast hits to 31766 proteins in 3165 species: Archae - 1626; Bacteria - 13920; Metazoa - 5344; Fungi - 4031; Plants - 3389; Viruses - 33; Other Eukaryotes - 7693 (source: NCBI BLink). & (p54774|cdc48_soybn : 156.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 354.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021179.32","No alias","Cyanophora paradoxa","(at4g02480 : 356.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G02890.1); Has 36961 Blast hits to 32268 proteins in 3150 species: Archae - 1594; Bacteria - 13825; Metazoa - 4872; Fungi - 3636; Plants - 2887; Viruses - 35; Other Eukaryotes - 10112 (source: NCBI BLink). & (p54774|cdc48_soybn : 179.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 712.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021179.74","No alias","Cyanophora paradoxa","(at5g15250 : 270.0) Encodes an FtsH protease that is localized to the chloroplast. AtFtsH6 is involved in the degradation of both Lhcb3 and Lhcb1 during senescence and high-light acclimation.; FTSH protease 6 (FTSH6); CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41, FtsH extracellular (InterPro:IPR011546), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1). & (q5z974|ftsh_orysa : 270.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 540.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021275.24","No alias","Cyanophora paradoxa","(at5g42270 : 189.0) VAR1 contains a conserved motif for ATPase and a metalloprotease characteristic to FtsH proteins, and is targeted into chloroplasts. A VAR1-fusion protein synthesized in vitro exhibited ATPase activity and partial metalloprotease activity. This protein is located to the thylakoid membrane and forms a complex with VAR2. FtsH1 (VAR1) and FtsH5 are interchangeable in thylakoid membranes.; VARIEGATED 1 (VAR1); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: photoinhibition, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q5z974|ftsh_orysa : 187.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 378.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021352.24","No alias","Cyanophora paradoxa","(at5g63860 : 185.0) UV-B-specific signaling component that orchestrates expression of a range of genes with vital UV-protective functions. Located in the nucleus and the cytosol. Associates with chromatin via histones. UV-B light promotes URV8 protein accumulation in the nucleus.; UVB-RESISTANCE 8 (UVR8); FUNCTIONS IN: chromatin binding, guanyl-nucleotide exchange factor activity; INVOLVED IN: response to UV, response to UV-B; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G12350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 370.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021357.12","No alias","Cyanophora paradoxa","(at1g21690 : 315.0) embryo defective 1968 (EMB1968); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), Replication factor C (InterPro:IPR013748); BEST Arabidopsis thaliana protein match is: replication factor C 2 (TAIR:AT1G63160.1). & (reliability: 630.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021365.4","No alias","Cyanophora paradoxa","(at1g74310 : 597.0) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101.  AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.; heat shock protein 101 (HSP101); FUNCTIONS IN: protein binding, ATPase activity, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 (TAIR:AT4G14670.1); Has 27671 Blast hits to 24472 proteins in 3146 species: Archae - 360; Bacteria - 17866; Metazoa - 1124; Fungi - 430; Plants - 707; Viruses - 13; Other Eukaryotes - 7171 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 594.0) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 1194.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021365.5","No alias","Cyanophora paradoxa","(q6f2y7|hs101_orysa : 231.0) Heat shock protein 101 - Oryza sativa (Rice) & (at1g74310 : 228.0) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101.  AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.; heat shock protein 101 (HSP101); FUNCTIONS IN: protein binding, ATPase activity, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 (TAIR:AT4G14670.1); Has 27671 Blast hits to 24472 proteins in 3146 species: Archae - 360; Bacteria - 17866; Metazoa - 1124; Fungi - 430; Plants - 707; Viruses - 13; Other Eukaryotes - 7171 (source: NCBI BLink). & (reliability: 456.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021428.19","No alias","Cyanophora paradoxa","(at5g08470 : 170.0) an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals.; peroxisome 1 (PEX1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation, response to stress; LOCATED IN: peroxisome; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Aspartate decarboxylase-like fold (InterPro:IPR009010), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peroxisome biogenesis factor 1, N-terminal (InterPro:IPR015342); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 45022 Blast hits to 26157 proteins in 3042 species: Archae - 1897; Bacteria - 15808; Metazoa - 7500; Fungi - 5597; Plants - 4311; Viruses - 29; Other Eukaryotes - 9880 (source: NCBI BLink). & (q96372|cdc48_capan : 113.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 340.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021428.9","No alias","Cyanophora paradoxa","(at2g29080 : 366.0) encodes an FtsH protease that is localized to the mitochondrion; FTSH protease 3 (ftsh3); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: mitochondrion, chloroplast thylakoid membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 10 (TAIR:AT1G07510.1); Has 42068 Blast hits to 39734 proteins in 3332 species: Archae - 1581; Bacteria - 17420; Metazoa - 4814; Fungi - 3774; Plants - 3280; Viruses - 30; Other Eukaryotes - 11169 (source: NCBI BLink). & (q9bae0|ftsh_medsa : 218.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Medicago sativa (Alfalfa) & (reliability: 720.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021439.10","No alias","Cyanophora paradoxa","(at3g19740 : 80.9) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G50140.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 161.8) &  (original description: no original description)","protein_coding"
"evm.model.tig00021463.11","No alias","Cyanophora paradoxa","(at3g09840 : 945.0) Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation.; cell division cycle 48 (CDC48); FUNCTIONS IN: ATPase activity, identical protein binding; INVOLVED IN: response to cadmium ion, pollen germination, pollen tube growth, cell division, phosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66378 Blast hits to 39099 proteins in 3298 species: Archae - 1713; Bacteria - 29252; Metazoa - 8676; Fungi - 6302; Plants - 5800; Viruses - 77; Other Eukaryotes - 14558 (source: NCBI BLink). & (p54774|cdc48_soybn : 942.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1890.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021464.16","No alias","Cyanophora paradoxa","(at1g53750 : 664.0) 26S proteasome AAA-ATPase subunit RPT1a (RPT1a) mRNA,; regulatory particle triple-A 1A (RPT1A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (TAIR:AT1G53780.2); Has 30646 Blast hits to 28391 proteins in 3108 species: Archae - 1452; Bacteria - 10350; Metazoa - 4866; Fungi - 3564; Plants - 3128; Viruses - 30; Other Eukaryotes - 7256 (source: NCBI BLink). & (q9fxt9|prs7_orysa : 664.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Oryza sativa (Rice) & (reliability: 1328.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021489.1","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021521.19","No alias","Cyanophora paradoxa","(at4g04180 : 135.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, flower, pedicel, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G45000.1); Has 31547 Blast hits to 29327 proteins in 3060 species: Archae - 1473; Bacteria - 12216; Metazoa - 4656; Fungi - 3754; Plants - 2675; Viruses - 24; Other Eukaryotes - 6749 (source: NCBI BLink). & (reliability: 270.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021535.18","No alias","Cyanophora paradoxa","(at5g53540 : 101.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G27680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p54778|prs6b_soltu : 86.7) 26S protease regulatory subunit 6B homolog - Solanum tuberosum (Potato) & (reliability: 192.6) &  (original description: no original description)","protein_coding"
"evm.model.tig00021583.8","No alias","Cyanophora paradoxa","(at4g24860 : 124.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, leaf whorl, sperm cell, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G62130.1); Has 36802 Blast hits to 34347 proteins in 3158 species: Archae - 1551; Bacteria - 15209; Metazoa - 4767; Fungi - 3515; Plants - 2998; Viruses - 28; Other Eukaryotes - 8734 (source: NCBI BLink). & (q96372|cdc48_capan : 112.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 226.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021603.5","No alias","Cyanophora paradoxa","(at4g04180 : 184.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, flower, pedicel, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G45000.1); Has 31547 Blast hits to 29327 proteins in 3060 species: Archae - 1473; Bacteria - 12216; Metazoa - 4656; Fungi - 3754; Plants - 2675; Viruses - 24; Other Eukaryotes - 6749 (source: NCBI BLink). & (p54774|cdc48_soybn : 98.6) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 368.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00021612.5","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00021741.16","No alias","Cyanophora paradoxa"," no hits & (original description: no original description)","protein_coding"
"evm.model.tig00022075.42","No alias","Cyanophora paradoxa","(o82150|ftsh_tobac : 339.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco) & (at1g50250 : 338.0) encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes.; FTSH protease 1 (FTSH1); FUNCTIONS IN: metallopeptidase activity, protein binding, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: photosystem II repair, PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid lumen, chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT5G42270.1); Has 39789 Blast hits to 37355 proteins in 3308 species: Archae - 1512; Bacteria - 16133; Metazoa - 4957; Fungi - 3666; Plants - 3305; Viruses - 34; Other Eukaryotes - 10182 (source: NCBI BLink). & (reliability: 676.0) &  (original description: no original description)","protein_coding"
"evm.model.tig00022075.46","No alias","Cyanophora paradoxa","(at5g58290 : 470.0) 26S proteasome AAA-ATPase subunit RPT3 (RPT3) mRNA,; regulatory particle triple-A ATPase 3 (RPT3); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, cell wall, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle AAA-ATPase 2A (TAIR:AT4G29040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p54778|prs6b_soltu : 462.0) 26S protease regulatory subunit 6B homolog - Solanum tuberosum (Potato) & (reliability: 940.0) &  (original description: no original description)","protein_coding"
"Glyma.01G171300","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.01G171400","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.01G174000","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.01G203100","No alias","Glycine max","lon protease 2","protein_coding"
"Glyma.01G223100","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.02G053466","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.02G053600","No alias","Glycine max","cytochrome BC1 synthesis","protein_coding"
"Glyma.02G118800","No alias","Glycine max","cell division cycle 48B","protein_coding"
"Glyma.02G155000","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.02G155100","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.02G225300","No alias","Glycine max","FTSH protease 9","protein_coding"
"Glyma.02G226900","No alias","Glycine max","Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.02G249600","No alias","Glycine max","rubisco activase","protein_coding"
"Glyma.03G068100","No alias","Glycine max","rubisco activase","protein_coding"
"Glyma.03G123500","No alias","Glycine max","Cam interacting protein 111","protein_coding"
"Glyma.03G170600","No alias","Glycine max","regulatory particle AAA-ATPase 2A","protein_coding"
"Glyma.03G182800","No alias","Glycine max","ATPase, AAA-type, CDC48 protein","protein_coding"
"Glyma.03G235250","No alias","Glycine max","regulatory particle triple-A ATPase 5A","protein_coding"
"Glyma.03G259300","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.03G262800","No alias","Glycine max","regulatory particle triple-A 1A","protein_coding"
"Glyma.04G019100","No alias","Glycine max","FtsH extracellular protease family","protein_coding"
"Glyma.04G029400","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.04G062200","No alias","Glycine max","casein lytic proteinase B4","protein_coding"
"Glyma.04G163200","No alias","Glycine max","heat shock protein 101","protein_coding"
"Glyma.04G172900","No alias","Glycine max","ABC2 homolog 6","protein_coding"
"Glyma.04G186000","No alias","Glycine max","ATPase, AAA-type, CDC48 protein","protein_coding"
"Glyma.04G188400","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.04G194900","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.04G200400","No alias","Glycine max","CLPC homologue 1","protein_coding"
"Glyma.04G203300","No alias","Glycine max","Clp ATPase","protein_coding"
"Glyma.04G213800","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.04G232100","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.04G232200","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.04G235600","No alias","Glycine max","CLP protease regulatory subunit X","protein_coding"
"Glyma.04G246800","No alias","Glycine max","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Glyma.04G248900","No alias","Glycine max","replication factor C subunit 3","protein_coding"
"Glyma.05G022200","No alias","Glycine max","heat shock protein 101","protein_coding"
"Glyma.05G031400","No alias","Glycine max","AAA-ATPase 1","protein_coding"
"Glyma.05G047400","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.05G048900","No alias","Glycine max","replication factor C 2","protein_coding"
"Glyma.05G068600","No alias","Glycine max","lon protease 2","protein_coding"
"Glyma.05G077900","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.05G091650","No alias","Glycine max","ATPase, AAA-type, CDC48 protein","protein_coding"
"Glyma.05G130700","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.05G132000","No alias","Glycine max","FtsH extracellular protease family","protein_coding"
"Glyma.05G201100","No alias","Glycine max","CLPC homologue 1","protein_coding"
"Glyma.05G212900","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.06G009700","No alias","Glycine max","regulatory particle triple-A ATPase 4A","protein_coding"
"Glyma.06G019400","No alias","Glycine max","FtsH extracellular protease family","protein_coding"
"Glyma.06G029400","No alias","Glycine max","regulatory particle triple-A ATPase 4A","protein_coding"
"Glyma.06G063202","No alias","Glycine max","casein lytic proteinase B4","protein_coding"
"Glyma.06G114100","No alias","Glycine max","replication factor C subunit 3","protein_coding"
"Glyma.06G116000","No alias","Glycine max","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Glyma.06G126000","No alias","Glycine max","FTSH protease 11","protein_coding"
"Glyma.06G129100","No alias","Glycine max","CLP protease regulatory subunit X","protein_coding"
"Glyma.06G132700","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.06G132800","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.06G152500","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.06G162200","No alias","Glycine max","Clp ATPase","protein_coding"
"Glyma.06G165200","No alias","Glycine max","CLPC homologue 1","protein_coding"
"Glyma.06G171000","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.06G177400","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.06G180000","No alias","Glycine max","ATPase, AAA-type, CDC48 protein","protein_coding"
"Glyma.06G202200","No alias","Glycine max","heat shock protein 101","protein_coding"
"Glyma.06G232100","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.06G236800","No alias","Glycine max","lon protease 1","protein_coding"
"Glyma.06G308700","No alias","Glycine max","replication factor C1","protein_coding"
"Glyma.07G002200","No alias","Glycine max","regulatory particle triple-A ATPase 6A","protein_coding"
"Glyma.07G034000","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.07G046700","No alias","Glycine max","regulatory particle triple-A 1A","protein_coding"
"Glyma.07G052700","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.07G085800","No alias","Glycine max","AAA-type ATPase family protein / ankyrin repeat family protein","protein_coding"
"Glyma.07G195900","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.07G224000","No alias","Glycine max","peroxisome 1","protein_coding"
"Glyma.08G008400","No alias","Glycine max","CLPC homologue 1","protein_coding"
"Glyma.08G019400","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.08G023900","No alias","Glycine max","FtsH extracellular protease family","protein_coding"
"Glyma.08G085500","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.08G086600","No alias","Glycine max","FtsH extracellular protease family","protein_coding"
"Glyma.08G158400","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.08G186800","No alias","Glycine max","cell division cycle 48C","protein_coding"
"Glyma.08G208100","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.08G224500","No alias","Glycine max","regulatory particle triple-A ATPase 6A","protein_coding"
"Glyma.08G237500","No alias","Glycine max","FTSH protease 12","protein_coding"
"Glyma.08G242100","No alias","Glycine max","casein lytic proteinase B3","protein_coding"
"Glyma.08G284700","No alias","Glycine max","ATPase, AAA-type, CDC48 protein","protein_coding"
"Glyma.09G052600","No alias","Glycine max","FTSH protease 8","protein_coding"
"Glyma.09G127000","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.09G155200","No alias","Glycine max","ATP-dependent Clp protease","protein_coding"
"Glyma.09G191100","No alias","Glycine max","AAA-type ATPase family protein / ankyrin repeat family protein","protein_coding"
"Glyma.09G241600","No alias","Glycine max","AAA-ATPase 1","protein_coding"
"Glyma.09G267500","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.10G019300","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.10G019400","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.10G043000","No alias","Glycine max","regulatory particle AAA-ATPase 2A","protein_coding"
"Glyma.10G057100","No alias","Glycine max","ATPase, AAA-type, CDC48 protein","protein_coding"
"Glyma.10G123400","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.10G147200","No alias","Glycine max","lon protease 1","protein_coding"
"Glyma.10G151900","No alias","Glycine max","regulatory particle triple-A ATPase 5A","protein_coding"
"Glyma.10G164800","No alias","Glycine max","FtsH extracellular protease family","protein_coding"
"Glyma.10G176766","No alias","Glycine max","ATP-dependent Clp protease","protein_coding"
"Glyma.10G229400","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.10G276400","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.11G020300","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.11G039951","No alias","Glycine max","lon protease 2","protein_coding"
"Glyma.11G069000","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.11G071600","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.11G071700","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.11G071800","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.11G091700","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.11G101600","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.11G128300","No alias","Glycine max","cell division cycle protein 48-related / CDC48-related","protein_coding"
"Glyma.11G137700","No alias","Glycine max","FTSH protease 10","protein_coding"
"Glyma.11G174500","No alias","Glycine max","Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.11G184700","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.11G194900","No alias","Glycine max","ATPase, AAA-type, CDC48 protein","protein_coding"
"Glyma.11G199900","No alias","Glycine max","regulatory particle triple-A ATPase 3","protein_coding"
"Glyma.11G200000","No alias","Glycine max","regulatory particle triple-A ATPase 3","protein_coding"
"Glyma.11G221000","No alias","Glycine max","rubisco activase","protein_coding"
"Glyma.11G230700","No alias","Glycine max","Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.12G017700","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.12G027500","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.12G041100","No alias","Glycine max","cytochrome BC1 synthesis","protein_coding"
"Glyma.12G052800","No alias","Glycine max","cell division cycle protein 48-related / CDC48-related","protein_coding"
"Glyma.12G061200","No alias","Glycine max","FTSH protease 10","protein_coding"
"Glyma.12G061400","No alias","Glycine max","FTSH protease 10","protein_coding"
"Glyma.12G079202","No alias","Glycine max","ATPase, AAA-type, CDC48 protein","protein_coding"
"Glyma.12G087700","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.12G096100","No alias","Glycine max","replication factor C1","protein_coding"
"Glyma.12G177100","No alias","Glycine max","ATPase, AAA-type, CDC48 protein","protein_coding"
"Glyma.12G183700","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.12G227000","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.12G229000","No alias","Glycine max","cytochrome BC1 synthesis","protein_coding"
"Glyma.13G041700","No alias","Glycine max","FTSH protease 11","protein_coding"
"Glyma.13G049800","No alias","Glycine max","cell division protein ftsH, putative","protein_coding"
"Glyma.13G058600","No alias","Glycine max","casein lytic proteinase B3","protein_coding"
"Glyma.13G066100","No alias","Glycine max","AAA-ATPase 1","protein_coding"
"Glyma.13G096200","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.13G130400","No alias","Glycine max","regulatory particle AAA-ATPase 2A","protein_coding"
"Glyma.13G143600","No alias","Glycine max","ATPase, AAA-type, CDC48 protein","protein_coding"
"Glyma.13G180100","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.13G273300","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.13G317300","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.13G323600","No alias","Glycine max","ATPase, AAA-type, CDC48 protein","protein_coding"
"Glyma.13G340100","No alias","Glycine max","origin recognition complex 1","protein_coding"
"Glyma.13G355400","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.13G361600","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.13G371900","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.14G003100","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.14G067000","No alias","Glycine max","rubisco activase","protein_coding"
"Glyma.14G071000","No alias","Glycine max","regulatory particle triple-A ATPase 4A","protein_coding"
"Glyma.14G096000","No alias","Glycine max","FTSH protease 4","protein_coding"
"Glyma.14G096100","No alias","Glycine max","FTSH protease 4","protein_coding"
"Glyma.14G101600","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.14G107400","No alias","Glycine max","TTF-type zinc finger protein with HAT dimerisation domain","protein_coding"
"Glyma.14G117800","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.14G124900","No alias","Glycine max","FTSH protease 11","protein_coding"
"Glyma.14G192100","No alias","Glycine max","FTSH protease 9","protein_coding"
"Glyma.14G193900","No alias","Glycine max","Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.15G012200","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.15G018800","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.15G034300","No alias","Glycine max","origin recognition complex 1","protein_coding"
"Glyma.15G046201","No alias","Glycine max","cell division cycle 48C","protein_coding"
"Glyma.15G112100","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.15G158900","No alias","Glycine max","FTSH protease 8","protein_coding"
"Glyma.15G268000","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.16G015500","No alias","Glycine max","regulatory particle triple-A 1A","protein_coding"
"Glyma.16G021700","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.16G057400","No alias","Glycine max","peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases","protein_coding"
"Glyma.16G133500","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.16G133600","No alias","Glycine max","cytochrome BC1 synthesis","protein_coding"
"Glyma.16G173700","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.16G174200","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.16G174900","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.16G176500","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.16G205700","No alias","Glycine max","ATP-dependent Clp protease","protein_coding"
"Glyma.17G059232","No alias","Glycine max","cell division cycle 48C","protein_coding"
"Glyma.17G063900","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.17G077500","No alias","Glycine max","heat shock protein 101","protein_coding"
"Glyma.17G095500","No alias","Glycine max","AAA-ATPase 1","protein_coding"
"Glyma.17G129200","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.17G130800","No alias","Glycine max","replication factor C 2","protein_coding"
"Glyma.17G151100","No alias","Glycine max","lon protease 2","protein_coding"
"Glyma.17G223500","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.17G228100","No alias","Glycine max","FTSH protease 4","protein_coding"
"Glyma.17G253600","No alias","Glycine max","regulatory particle triple-A ATPase 4A","protein_coding"
"Glyma.18G036400","No alias","Glycine max","rubisco activase","protein_coding"
"Glyma.18G050900","No alias","Glycine max","regulatory particle triple-A ATPase 3","protein_coding"
"Glyma.18G062300","No alias","Glycine max","Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.18G065600","No alias","Glycine max","FTSH protease 9","protein_coding"
"Glyma.18G117900","No alias","Glycine max","ATPase, AAA-type, CDC48 protein","protein_coding"
"Glyma.18G186867","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.18G222400","No alias","Glycine max","AAA-type ATPase family protein","protein_coding"
"Glyma.18G254100","No alias","Glycine max","AAA-ATPase 1","protein_coding"
"Glyma.18G254200","No alias","Glycine max","AAA-ATPase 1","protein_coding"
"Glyma.18G259700","No alias","Glycine max","FTSH protease 6","protein_coding"
"Glyma.18G264400","No alias","Glycine max","casein lytic proteinase B3","protein_coding"
"Glyma.19G018600","No alias","Glycine max","AAA-ATPase 1","protein_coding"
"Glyma.19G018700","No alias","Glycine max","AAA-ATPase 1","protein_coding"
"Glyma.19G027900","No alias","Glycine max","casein lytic proteinase B3","protein_coding"
"Glyma.19G040200","No alias","Glycine max","cell division protein ftsH, putative","protein_coding"
"Glyma.19G071600","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.19G127101","No alias","Glycine max","Cam interacting protein 111","protein_coding"
"Glyma.19G171700","No alias","Glycine max","regulatory particle AAA-ATPase 2A","protein_coding"
"Glyma.19G183400","No alias","Glycine max","ATPase, AAA-type, CDC48 protein","protein_coding"
"Glyma.19G208300","No alias","Glycine max","peroxin 6","protein_coding"
"Glyma.19G232901","No alias","Glycine max","regulatory particle triple-A ATPase 5A","protein_coding"
"Glyma.19G258100","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.19G261800","No alias","Glycine max","regulatory particle triple-A 1A","protein_coding"
"Glyma.20G075951","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.20G097700","No alias","Glycine max","lon protease 1","protein_coding"
"Glyma.20G113300","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.20G163900","No alias","Glycine max","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Glyma.20G213400","No alias","Glycine max","ATP-dependent Clp protease","protein_coding"
"Glyma.20G227000","No alias","Glycine max","FtsH extracellular protease family","protein_coding"
"Glyma.20G236500","No alias","Glycine max","regulatory particle triple-A ATPase 5A","protein_coding"
"GRMZM2G001084","No alias","Zea mays","CLPC homologue 1","protein_coding"
"GRMZM2G003984","No alias","Zea mays","lon protease 1","protein_coding"
"GRMZM2G004040","No alias","Zea mays","FTSH protease 11","protein_coding"
"GRMZM2G009443","No alias","Zea mays","CLPC homologue 1","protein_coding"
"GRMZM2G009987","No alias","Zea mays","regulatory particle triple-A ATPase 3","protein_coding"
"GRMZM2G011319","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G013115","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G014646","No alias","Zea mays","regulatory particle triple-A ATPase 3","protein_coding"
"GRMZM2G017305","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G017961","No alias","Zea mays","lon protease 2","protein_coding"
"GRMZM2G019621","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G022777","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G027282","No alias","Zea mays","regulatory particle triple-A ATPase 5A","protein_coding"
"GRMZM2G028129","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G032505","No alias","Zea mays","regulatory particle triple-A ATPase 5A","protein_coding"
"GRMZM2G036765","No alias","Zea mays","ATPase, AAA-type, CDC48 protein","protein_coding"
"GRMZM2G038126","No alias","Zea mays","regulatory particle triple-A ATPase 3","protein_coding"
"GRMZM2G038401","No alias","Zea mays","FTSH protease 10","protein_coding"
"GRMZM2G040079","No alias","Zea mays","cell division cycle protein 48-related / CDC48-related","protein_coding"
"GRMZM2G042074","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G043817","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G048836","No alias","Zea mays","FTSH protease 6","protein_coding"
"GRMZM2G049188","No alias","Zea mays","ATPase, AAA-type, CDC48 protein","protein_coding"
"GRMZM2G050186","No alias","Zea mays","CLP protease regulatory subunit X","protein_coding"
"GRMZM2G052403","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G053934","No alias","Zea mays","AAA-type ATPase family protein / ankyrin repeat family protein","protein_coding"
"GRMZM2G054715","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G056569","No alias","Zea mays","regulatory particle AAA-ATPase 2A","protein_coding"
"GRMZM2G058141","No alias","Zea mays","peroxin 6","protein_coding"
"GRMZM2G058491","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G060561","No alias","Zea mays","casein lytic proteinase B4","protein_coding"
"GRMZM2G063060","No alias","Zea mays","ATPase, AAA-type, CDC48 protein","protein_coding"
"GRMZM2G063672","No alias","Zea mays","cytochrome BC1 synthesis","protein_coding"
"GRMZM2G066615","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G067242","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G069422","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G070305","No alias","Zea mays","peroxisome 1","protein_coding"
"GRMZM2G071272","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G072865","No alias","Zea mays","FTSH protease 9","protein_coding"
"GRMZM2G074037","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G075584","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G077045","No alias","Zea mays","NAC (No Apical Meristem) domain transcriptional regulator superfamily protein","protein_coding"
"GRMZM2G082131","No alias","Zea mays","cell division cycle 48C","protein_coding"
"GRMZM2G083820","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G085243","No alias","Zea mays","proteasome subunit PAB1","protein_coding"
"GRMZM2G087598","No alias","Zea mays","FtsH extracellular protease family","protein_coding"
"GRMZM2G088834","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G090904","No alias","Zea mays","regulatory particle triple-A ATPase 3","protein_coding"
"GRMZM2G093217","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G095254","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G095593","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G096764","No alias","Zea mays","FTSH protease 4","protein_coding"
"GRMZM2G096812","No alias","Zea mays","cytochrome BC1 synthesis","protein_coding"
"GRMZM2G101791","No alias","Zea mays","ATP-dependent Clp protease","protein_coding"
"GRMZM2G103186","No alias","Zea mays","ATPase, AAA-type, CDC48 protein","protein_coding"
"GRMZM2G103740","No alias","Zea mays","ATPase family associated with various cellular activities (AAA)","protein_coding"
"GRMZM2G104373","No alias","Zea mays","regulatory particle AAA-ATPase 2A","protein_coding"
"GRMZM2G106807","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G107362","No alias","Zea mays","regulatory particle triple-A ATPase 6A","protein_coding"
"GRMZM2G109560","No alias","Zea mays","lon protease 2","protein_coding"
"GRMZM2G110185","No alias","Zea mays","regulatory particle triple-A 1A","protein_coding"
"GRMZM2G110408","No alias","Zea mays","FtsH extracellular protease family","protein_coding"
"GRMZM2G113056","No alias","Zea mays","lon protease 1","protein_coding"
"GRMZM2G115766","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G116858","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G122061","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G123922","No alias","Zea mays","CLPC homologue 1","protein_coding"
"GRMZM2G125151","No alias","Zea mays","cell division protein ftsH, putative","protein_coding"
"GRMZM2G126292","No alias","Zea mays","replication factor C subunit 3","protein_coding"
"GRMZM2G126361","No alias","Zea mays","FtsH extracellular protease family","protein_coding"
"GRMZM2G126453","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G126860","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G128605","No alias","Zea mays","ATPase, AAA-type, CDC48 protein","protein_coding"
"GRMZM2G128748","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G130121","No alias","Zea mays","casein lytic proteinase B3","protein_coding"
"GRMZM2G134749","No alias","Zea mays","cell division cycle 48C","protein_coding"
"GRMZM2G137321","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G137528","No alias","Zea mays","regulatory particle triple-A ATPase 6A","protein_coding"
"GRMZM2G138770","No alias","Zea mays","AAA-ATPase 1","protein_coding"
"GRMZM2G144197","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G145599","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G147819","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G149567","No alias","Zea mays","Clp ATPase","protein_coding"
"GRMZM2G149994","No alias","Zea mays","cell division cycle 48B","protein_coding"
"GRMZM2G152587","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G156069","No alias","Zea mays","FTSH protease 11","protein_coding"
"GRMZM2G157621","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G158136","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G159307","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G159977","No alias","Zea mays","AAA-ATPase 1","protein_coding"
"GRMZM2G162200","No alias","Zea mays","rubisco activase","protein_coding"
"GRMZM2G162282","No alias","Zea mays","rubisco activase","protein_coding"
"GRMZM2G162800","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G162968","No alias","Zea mays","casein lytic proteinase B3","protein_coding"
"GRMZM2G163193","No alias","Zea mays","FTSH protease 9","protein_coding"
"GRMZM2G165817","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G168228","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G168249","No alias","Zea mays","origin recognition complex 1","protein_coding"
"GRMZM2G170037","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G170982","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G171604","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G172230","No alias","Zea mays","Clp ATPase","protein_coding"
"GRMZM2G172829","No alias","Zea mays","CLP protease regulatory subunit X","protein_coding"
"GRMZM2G173849","No alias","Zea mays","regulatory particle triple-A ATPase 5A","protein_coding"
"GRMZM2G175593","No alias","Zea mays","cytochrome BC1 synthesis","protein_coding"
"GRMZM2G177070","No alias","Zea mays","cell division protein ftsH, putative","protein_coding"
"GRMZM2G178645","No alias","Zea mays","AAA-ATPase 1","protein_coding"
"GRMZM2G180080","No alias","Zea mays","cytochrome BC1 synthesis","protein_coding"
"GRMZM2G181359","No alias","Zea mays","regulatory particle triple-A 1A","protein_coding"
"GRMZM2G302229","No alias","Zea mays","lon protease 2","protein_coding"
"GRMZM2G310947","No alias","Zea mays","AAA-ATPase 1","protein_coding"
"GRMZM2G315264","No alias","Zea mays","Cam interacting protein 111","protein_coding"
"GRMZM2G331833","No alias","Zea mays","CLP protease regulatory subunit X","protein_coding"
"GRMZM2G354532","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G360681","No alias","Zea mays","heat shock protein 101","protein_coding"
"GRMZM2G361049","No alias","Zea mays","ribosomal protein 1","protein_coding"
"GRMZM2G365688","No alias","Zea mays","ATPase, AAA-type, CDC48 protein","protein_coding"
"GRMZM2G370521","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G381576","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G382240","No alias","Zea mays","proteasome subunit PAB1","protein_coding"
"GRMZM2G385265","No alias","Zea mays","cell division cycle 48","protein_coding"
"GRMZM2G387383","No alias","Zea mays","lon protease 1","protein_coding"
"GRMZM2G398755","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G402088","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G403454","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G408881","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G409190","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G417650","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G435582","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G438355","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G444560","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G445617","No alias","Zea mays","peroxin 6","protein_coding"
"GRMZM2G451483","No alias","Zea mays","FTSH protease 4","protein_coding"
"GRMZM2G455243","No alias","Zea mays","origin recognition complex 1","protein_coding"
"GRMZM2G456187","No alias","Zea mays","ATPase, AAA-type, CDC48 protein","protein_coding"
"GRMZM2G457381","No alias","Zea mays","replication factor C1","protein_coding"
"GRMZM2G458095","No alias","Zea mays","cytochrome BC1 synthesis","protein_coding"
"GRMZM2G461231","No alias","Zea mays","Papain family cysteine protease","protein_coding"
"GRMZM2G463032","No alias","Zea mays","FTSH protease 4","protein_coding"
"GRMZM2G475360","No alias","Zea mays","cell division cycle 48C","protein_coding"
"GRMZM2G481069","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM2G482077","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G587327","No alias","Zea mays","AAA-type ATPase family protein","protein_coding"
"GRMZM2G701930","No alias","Zea mays","ATPase, AAA-type, CDC48 protein","protein_coding"
"GRMZM2G703490","No alias","Zea mays","ATPase, AAA-type, CDC48 protein","protein_coding"
"GRMZM5G819464","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM5G831804","No alias","Zea mays","cell division cycle 48C","protein_coding"
"GRMZM5G856201","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM5G859683","No alias","Zea mays","ATPase, AAA-type, CDC48 protein","protein_coding"
"GRMZM5G861603","No alias","Zea mays","CLP protease regulatory subunit X","protein_coding"
"GRMZM5G874082","No alias","Zea mays","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"GRMZM5G893912","No alias","Zea mays","AAA-ATPase 1","protein_coding"
"GRMZM6G704070","No alias","Zea mays","cytochrome BC1 synthesis","protein_coding"
"GRMZM6G798998","No alias","Zea mays","replication factor C 2","protein_coding"
"HORVU0Hr1G005570.3","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU0Hr1G006340.1","No alias","Hordeum vulgare","platform ATPase CDC48","protein_coding"
"HORVU0Hr1G013350.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU0Hr1G016640.4","No alias","Hordeum vulgare","regulatory protein *(SBA) of mitochondrial nucleoid organization","protein_coding"
"HORVU0Hr1G021880.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU0Hr1G032110.1","No alias","Hordeum vulgare","regulatory protein *(SBA) of mitochondrial nucleoid organization","protein_coding"
"HORVU0Hr1G038060.2","No alias","Hordeum vulgare","platform ATPase CDC48","protein_coding"
"HORVU1Hr1G005450.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G015310.16","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G048340.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G049910.1","No alias","Hordeum vulgare","platform ATPase CDC48","protein_coding"
"HORVU1Hr1G055380.1","No alias","Hordeum vulgare","LON-type protease","protein_coding"
"HORVU1Hr1G060340.2","No alias","Hordeum vulgare","platform ATPase CDC48","protein_coding"
"HORVU1Hr1G060370.1","No alias","Hordeum vulgare","platform ATPase CDC48","protein_coding"
"HORVU1Hr1G063390.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G068970.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G072490.2","No alias","Hordeum vulgare","component *(Fts3/10) of FtsH3/10 matrix-AAA protease heterodimers","protein_coding"
"HORVU1Hr1G076180.1","No alias","Hordeum vulgare","EC_3.6 hydrolase acting on acid anhydride & regulatory ATPase *(NSF/SEC18)","protein_coding"
"HORVU1Hr1G076190.4","No alias","Hordeum vulgare","cytosolic chaperone *(Hsp101)","protein_coding"
"HORVU1Hr1G080910.5","No alias","Hordeum vulgare","unfoldase component *(ClpX) of mitochondrion Clp-type protease complex","protein_coding"
"HORVU1Hr1G092440.3","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G093600.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G093700.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G093710.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G093760.13","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU1Hr1G094900.6","No alias","Hordeum vulgare","ATP-dependent metalloprotease *(FtsH4/11)","protein_coding"
"HORVU2Hr1G011690.1","No alias","Hordeum vulgare","platform ATPase CDC48","protein_coding"
"HORVU2Hr1G014000.1","No alias","Hordeum vulgare","regulatory component *(RPT3) of 26S proteasome","protein_coding"
"HORVU2Hr1G014770.1","No alias","Hordeum vulgare","regulatory component *(RPT2) of 26S proteasome","protein_coding"
"HORVU2Hr1G016000.6","No alias","Hordeum vulgare","LON-type protease","protein_coding"
"HORVU2Hr1G019730.16","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G046180.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G046240.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G046290.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G046310.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G046330.3","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G071080.1","No alias","Hordeum vulgare","chaperone component *(ClpC) of chloroplast Clp-type protease complex","protein_coding"
"HORVU2Hr1G072020.8","No alias","Hordeum vulgare","chaperone component *(ClpD) of chloroplast Clp-type protease complex","protein_coding"
"HORVU2Hr1G081320.3","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G086170.1","No alias","Hordeum vulgare","platform ATPase CDC48","protein_coding"
"HORVU2Hr1G087740.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G095220.3","No alias","Hordeum vulgare","component *(RFC2) of PCNA sliding clamp loader complex","protein_coding"
"HORVU2Hr1G103540.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU2Hr1G104530.3","No alias","Hordeum vulgare","component *(Pex6) of Pex1-Pex6 subcomplex","protein_coding"
"HORVU3Hr1G010300.1","No alias","Hordeum vulgare","ATPase component *(VPS4/SKD1) of VPS4-VTA1 ESCRT-disassembly complex & EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"HORVU3Hr1G029440.1","No alias","Hordeum vulgare","platform ATPase CDC48","protein_coding"
"HORVU3Hr1G029450.1","No alias","Hordeum vulgare","platform ATPase CDC48","protein_coding"
"HORVU3Hr1G029660.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G030770.9","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G049910.1","No alias","Hordeum vulgare","ATP-dependent metalloprotease *(FtsH4/11)","protein_coding"
"HORVU3Hr1G052880.4","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G054770.9","No alias","Hordeum vulgare","ATP-dependent metalloprotease *(FtsH4/11)","protein_coding"
"HORVU3Hr1G055830.5","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G057540.3","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G061240.1","No alias","Hordeum vulgare","component *(BRP1) of anti-silencing regulator complex & component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination heterodimer","protein_coding"
"HORVU3Hr1G061800.2","No alias","Hordeum vulgare","EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"HORVU3Hr1G063300.1","No alias","Hordeum vulgare","catalytic component of Katanin ATP-dependent microtubule severing complex & EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"HORVU3Hr1G067470.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G071120.7","No alias","Hordeum vulgare","cytosolic chaperone *(Hsp101)","protein_coding"
"HORVU3Hr1G072480.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G072910.1","No alias","Hordeum vulgare","EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"HORVU3Hr1G086170.5","No alias","Hordeum vulgare","component *(Fts3/10) of FtsH3/10 matrix-AAA protease heterodimers","protein_coding"
"HORVU3Hr1G086670.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G090710.9","No alias","Hordeum vulgare","unfoldase component *(ClpX) of mitochondrion Clp-type protease complex","protein_coding"
"HORVU3Hr1G114150.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU3Hr1G117690.9","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G008860.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G014120.2","No alias","Hordeum vulgare","chaperone component *(ClpC) of chloroplast Clp-type protease complex","protein_coding"
"HORVU4Hr1G016200.14","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G027260.8","No alias","Hordeum vulgare","ATP-dependent activase involved in RuBisCo regulation","protein_coding"
"HORVU4Hr1G033300.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G046420.6","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G055060.1","No alias","Hordeum vulgare","regulatory component *(RPT2) of 26S proteasome","protein_coding"
"HORVU4Hr1G059020.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G059040.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G061060.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G071960.2","No alias","Hordeum vulgare","platform ATPase CDC48","protein_coding"
"HORVU4Hr1G072010.1","No alias","Hordeum vulgare","platform ATPase CDC48","protein_coding"
"HORVU4Hr1G088930.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU4Hr1G090440.2","No alias","Hordeum vulgare","organellar chaperone *(Clp-p/Clp-m)","protein_coding"
"HORVU5Hr1G000640.4","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G000650.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G016200.1","No alias","Hordeum vulgare","glutathione transporter *(CLT)","protein_coding"
"HORVU5Hr1G019820.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G026270.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G029910.8","No alias","Hordeum vulgare","ATPase component *(FIGL1) of FIGL1-FLIP meiotic crossover regulator complex","protein_coding"
"HORVU5Hr1G031470.8","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G032270.1","No alias","Hordeum vulgare","regulatory component *(YCF2) of AAA-ATPase motor complex","protein_coding"
"HORVU5Hr1G035300.4","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G037020.1","No alias","Hordeum vulgare","component *(RFC4) of PCNA sliding clamp loader complex","protein_coding"
"HORVU5Hr1G063340.3","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G066780.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G069560.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G078590.1","No alias","Hordeum vulgare","component *(Pex1) of Pex1-Pex6 subcomplex","protein_coding"
"HORVU5Hr1G078780.1","No alias","Hordeum vulgare","component *(BRAT1) of anti-silencing regulator complex","protein_coding"
"HORVU5Hr1G081860.4","No alias","Hordeum vulgare","chaperone component *(ClpD) of chloroplast Clp-type protease complex","protein_coding"
"HORVU5Hr1G081930.2","No alias","Hordeum vulgare","LON-type protease","protein_coding"
"HORVU5Hr1G102390.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G102440.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G102460.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G104980.56","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G107410.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G119150.2","No alias","Hordeum vulgare","ATP-dependent metalloprotease *(FtsH4/11)","protein_coding"
"HORVU5Hr1G119160.5","No alias","Hordeum vulgare","ATP-dependent metalloprotease *(FtsH4/11)","protein_coding"
"HORVU5Hr1G119170.13","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G119220.30","No alias","Hordeum vulgare","ATP-dependent metalloprotease *(FtsH4/11)","protein_coding"
"HORVU5Hr1G123460.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G124260.3","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU5Hr1G124290.5","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G021770.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G028690.3","No alias","Hordeum vulgare","organellar chaperone *(Clp-p/Clp-m)","protein_coding"
"HORVU6Hr1G032570.1","No alias","Hordeum vulgare","regulatory component *(RPT4) of 26S proteasome","protein_coding"
"HORVU6Hr1G036990.7","No alias","Hordeum vulgare","regulatory component *(RPT6) of 26S proteasome","protein_coding"
"HORVU6Hr1G038660.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G043280.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G044030.8","No alias","Hordeum vulgare","unfoldase component *(ClpX) of mitochondrion Clp-type protease complex","protein_coding"
"HORVU6Hr1G053620.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G061440.9","No alias","Hordeum vulgare","component *(FtsH7/9) of FtsH plastidial protease complexes","protein_coding"
"HORVU6Hr1G063810.3","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G067630.1","No alias","Hordeum vulgare","regulatory protein *(SBA) of mitochondrial nucleoid organization","protein_coding"
"HORVU6Hr1G069110.3","No alias","Hordeum vulgare","regulatory protein *(SBA) of mitochondrial nucleoid organization","protein_coding"
"HORVU6Hr1G075440.6","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G076750.5","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU6Hr1G078830.4","No alias","Hordeum vulgare","component *(RFC5) of PCNA sliding clamp loader complex","protein_coding"
"HORVU6Hr1G083150.1","No alias","Hordeum vulgare","regulatory component *(RPT1) of 26S proteasome","protein_coding"
"HORVU6Hr1G087650.1","No alias","Hordeum vulgare","regulatory component *(RPT5) of 26S proteasome","protein_coding"
"HORVU7Hr1G002850.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G002880.2","No alias","Hordeum vulgare","platform ATPase CDC48","protein_coding"
"HORVU7Hr1G008380.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G008940.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G008950.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G009000.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G013190.10","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G031190.2","No alias","Hordeum vulgare","component *(ORC1) of origin recognition complex","protein_coding"
"HORVU7Hr1G032070.1","No alias","Hordeum vulgare","regulatory component *(RPT1) of 26S proteasome","protein_coding"
"HORVU7Hr1G035110.4","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G037870.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G058410.6","No alias","Hordeum vulgare","component *(Pex1) of Pex1-Pex6 subcomplex","protein_coding"
"HORVU7Hr1G084550.2","No alias","Hordeum vulgare","regulatory component *(RPT6) of 26S proteasome","protein_coding"
"HORVU7Hr1G090380.1","No alias","Hordeum vulgare","regulatory component *(RPT4) of 26S proteasome","protein_coding"
"HORVU7Hr1G091480.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G091790.1","No alias","Hordeum vulgare","component *(RFC1) of PCNA sliding clamp loader complex","protein_coding"
"HORVU7Hr1G098210.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G098220.4","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G098240.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G105270.2","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G105430.1","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G105530.5","No alias","Hordeum vulgare","Unknown function","protein_coding"
"HORVU7Hr1G107740.3","No alias","Hordeum vulgare","EXECUTER-cleavage protease *(FtsH2) & protease *(FtsH2/8) & component *(FtsH1/2/5/6/8) of FtsH plastidial protease complexes","protein_coding"
"HORVU7Hr1G119300.13","No alias","Hordeum vulgare","regulatory component *(RPT4) of 26S proteasome","protein_coding"
"HORVU7Hr1G121870.4","No alias","Hordeum vulgare","protease *(FtsH1/5) & component *(FtsH1/2/5/6/8) of FtsH plastidial protease complexes","protein_coding"
"Kfl00001_0640","kfl00001_0640_v1.1","Klebsormidium nitens","(at5g08470 : 373.0) an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals.; peroxisome 1 (PEX1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation, response to stress; LOCATED IN: peroxisome; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Aspartate decarboxylase-like fold (InterPro:IPR009010), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peroxisome biogenesis factor 1, N-terminal (InterPro:IPR015342); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 45022 Blast hits to 26157 proteins in 3042 species: Archae - 1897; Bacteria - 15808; Metazoa - 7500; Fungi - 5597; Plants - 4311; Viruses - 29; Other Eukaryotes - 9880 (source: NCBI BLink). & (p54774|cdc48_soybn : 196.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 746.0) &  (original description: no original description)","protein_coding"
"Kfl00001_0670","kfl00001_0670_v1.1","Klebsormidium nitens","(q5z974|ftsh_orysa : 365.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (at1g50250 : 364.0) encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes.; FTSH protease 1 (FTSH1); FUNCTIONS IN: metallopeptidase activity, protein binding, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: photosystem II repair, PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid lumen, chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT5G42270.1); Has 39789 Blast hits to 37355 proteins in 3308 species: Archae - 1512; Bacteria - 16133; Metazoa - 4957; Fungi - 3666; Plants - 3305; Viruses - 34; Other Eukaryotes - 10182 (source: NCBI BLink). & (reliability: 658.0) &  (original description: no original description)","protein_coding"
"Kfl00002_0420","kfl00002_0420_v1.1","Klebsormidium nitens","(at3g05530 : 701.0) Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle.  Essential for gametophyte development.  In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b.  RPT5a and RPT5b show accession-dependent functional redundancy.  In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.; regulatory particle triple-A ATPase 5A (RPT5A); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: 26S proteasome AAA-ATPase subunit RPT5B (TAIR:AT1G09100.1); Has 33265 Blast hits to 30927 proteins in 3145 species: Archae - 1437; Bacteria - 12044; Metazoa - 4947; Fungi - 3672; Plants - 3322; Viruses - 56; Other Eukaryotes - 7787 (source: NCBI BLink). & (o23894|prs6a_bracm : 700.0) 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) - Brassica campestris (Field mustard) & (reliability: 1402.0) &  (original description: no original description)","protein_coding"
"Kfl00014_0060","kfl00014_0060_v1.1","Klebsormidium nitens","(at5g53350 : 383.0) CLP protease regulatory subunit CLPX mRNA, nuclear gene; CLP protease regulatory subunit X (CLPX); FUNCTIONS IN: unfolded protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), Clp protease, ATP-binding subunit ClpX (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: ATP-dependent Clp protease (TAIR:AT1G33360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 766.0) &  (original description: no original description)","protein_coding"
"Kfl00015_0350","kfl00015_0350_v1.1","Klebsormidium nitens","(at3g16290 : 344.0) embryo defective 2083 (EMB2083); FUNCTIONS IN: in 8 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Peptidase M41 (InterPro:IPR000642), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 40436 Blast hits to 36159 proteins in 3226 species: Archae - 1511; Bacteria - 13353; Metazoa - 6817; Fungi - 4228; Plants - 3474; Viruses - 31; Other Eukaryotes - 11022 (source: NCBI BLink). & (q9bae0|ftsh_medsa : 244.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Medicago sativa (Alfalfa) & (reliability: 688.0) &  (original description: no original description)","protein_coding"
"Kfl00015_0470","kfl00015_0470_v1.1","Klebsormidium nitens","(p54774|cdc48_soybn : 91.7) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 90.1) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 180.2) &  (original description: no original description)","protein_coding"
"Kfl00020_0400","kfl00020_0400_v1.1","Klebsormidium nitens","(at5g19990 : 667.0) 26S proteasome AAA-ATPase subunit; regulatory particle triple-A ATPase 6A (RPT6A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G20000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (o64982|prs7_prupe : 351.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Prunus persica (Peach) & (reliability: 1334.0) &  (original description: no original description)","protein_coding"
"Kfl00022_0250","kfl00022_0250_v1.1","Klebsormidium nitens","(at1g21690 : 472.0) embryo defective 1968 (EMB1968); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), Replication factor C (InterPro:IPR013748); BEST Arabidopsis thaliana protein match is: replication factor C 2 (TAIR:AT1G63160.1). & (reliability: 944.0) &  (original description: no original description)","protein_coding"
"Kfl00027_0040","kfl00027_0040_v1.1","Klebsormidium nitens","(q6f2y7|hs101_orysa : 1156.0) Heat shock protein 101 - Oryza sativa (Rice) & (at1g74310 : 1140.0) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101.  AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.; heat shock protein 101 (HSP101); FUNCTIONS IN: protein binding, ATPase activity, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 (TAIR:AT4G14670.1); Has 27671 Blast hits to 24472 proteins in 3146 species: Archae - 360; Bacteria - 17866; Metazoa - 1124; Fungi - 430; Plants - 707; Viruses - 13; Other Eukaryotes - 7171 (source: NCBI BLink). & (reliability: 2280.0) &  (original description: no original description)","protein_coding"
"Kfl00033_0050","kfl00033_0050_v1.1","Klebsormidium nitens","(at4g24710 : 451.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: shoot apex, embryo, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Chaperonin clpA/B (InterPro:IPR001270); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 23595 Blast hits to 21814 proteins in 2884 species: Archae - 1432; Bacteria - 8057; Metazoa - 4130; Fungi - 3211; Plants - 2291; Viruses - 16; Other Eukaryotes - 4458 (source: NCBI BLink). & (reliability: 902.0) &  (original description: no original description)","protein_coding"
"Kfl00036_0350","kfl00036_0350_v1.1","Klebsormidium nitens","(at4g02480 : 517.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G02890.1); Has 36961 Blast hits to 32268 proteins in 3150 species: Archae - 1594; Bacteria - 13825; Metazoa - 4872; Fungi - 3636; Plants - 2887; Viruses - 35; Other Eukaryotes - 10112 (source: NCBI BLink). & (p54774|cdc48_soybn : 172.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1034.0) &  (original description: no original description)","protein_coding"
"Kfl00036_0360","kfl00036_0360_v1.1","Klebsormidium nitens","(at4g02480 : 695.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G02890.1); Has 36961 Blast hits to 32268 proteins in 3150 species: Archae - 1594; Bacteria - 13825; Metazoa - 4872; Fungi - 3636; Plants - 2887; Viruses - 35; Other Eukaryotes - 10112 (source: NCBI BLink). & (p54774|cdc48_soybn : 160.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1390.0) &  (original description: no original description)","protein_coding"
"Kfl00038_0210","kfl00038_0210_v1.1","Klebsormidium nitens","(at3g27120 : 445.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27130.1); Has 33109 Blast hits to 30842 proteins in 3139 species: Archae - 1459; Bacteria - 13342; Metazoa - 4781; Fungi - 3652; Plants - 2738; Viruses - 26; Other Eukaryotes - 7111 (source: NCBI BLink). & (q96372|cdc48_capan : 131.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 890.0) &  (original description: no original description)","protein_coding"
"Kfl00040_0300","kfl00040_0300_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00043_0180","kfl00043_0180_v1.1","Klebsormidium nitens","(o64982|prs7_prupe : 745.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Prunus persica (Peach) & (at1g53750 : 741.0) 26S proteasome AAA-ATPase subunit RPT1a (RPT1a) mRNA,; regulatory particle triple-A 1A (RPT1A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (TAIR:AT1G53780.2); Has 30646 Blast hits to 28391 proteins in 3108 species: Archae - 1452; Bacteria - 10350; Metazoa - 4866; Fungi - 3564; Plants - 3128; Viruses - 30; Other Eukaryotes - 7256 (source: NCBI BLink). & (reliability: 1482.0) &  (original description: no original description)","protein_coding"
"Kfl00055_0110","kfl00055_0110_v1.1","Klebsormidium nitens","(at4g02480 : 607.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G02890.1); Has 36961 Blast hits to 32268 proteins in 3150 species: Archae - 1594; Bacteria - 13825; Metazoa - 4872; Fungi - 3636; Plants - 2887; Viruses - 35; Other Eukaryotes - 10112 (source: NCBI BLink). & (q96372|cdc48_capan : 188.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 1214.0) &  (original description: no original description)","protein_coding"
"Kfl00064_0310","kfl00064_0310_v1.1","Klebsormidium nitens","(p93647|lonh1_maize : 1040.0) Lon protease homolog 1, mitochondrial precursor (EC 3.4.21.-) - Zea mays (Maize) & (at5g47040 : 1020.0) Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790).  Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells.  Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.; lon protease 2 (LON2); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein import into peroxisome matrix, docking, growth, lateral root development; LOCATED IN: organelle lumen, peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Peptidase S16, active site (InterPro:IPR008268), Peptidase S16, ATP-dependent protease La (InterPro:IPR004815), Peptidase S16, lon N-terminal (InterPro:IPR003111), Peptidase S16, Lon C-terminal (InterPro:IPR008269), ATPase, AAA+ type, core (InterPro:IPR003593), Regulator of G protein signalling superfamily (InterPro:IPR016137), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: lon protease 1 (TAIR:AT5G26860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 2040.0) &  (original description: no original description)","protein_coding"
"Kfl00065_0020","kfl00065_0020_v1.1","Klebsormidium nitens","(at1g79560 : 191.0) Encodes an FtsH protease that is localized to the chloroplast. Mutations in this locus result in embryo lethality.; FTSH protease 12 (FTSH12); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (o82150|ftsh_tobac : 144.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco) & (reliability: 382.0) &  (original description: no original description)","protein_coding"
"Kfl00069_0130","kfl00069_0130_v1.1","Klebsormidium nitens","(at5g22010 : 421.0) replication factor C1 (RFC1); FUNCTIONS IN: DNA clamp loader activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex, intracellular; CONTAINS InterPro DOMAIN/s: DNA replication factor RFC1, C-terminal (InterPro:IPR013725), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA replication factor C, large subunit (InterPro:IPR012178), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G04730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 842.0) &  (original description: no original description)","protein_coding"
"Kfl00069_0370","kfl00069_0370_v1.1","Klebsormidium nitens","(at3g56690 : 315.0) encodes a protein similar to ATPases and binds to calmodulin in vitro. This is a single-copy gene and is expressed in all tissues examined.; Cam interacting protein 111 (CIP111); FUNCTIONS IN: ATPase activity, calmodulin binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 63578 Blast hits to 32942 proteins in 3240 species: Archae - 2541; Bacteria - 24762; Metazoa - 9322; Fungi - 6853; Plants - 5967; Viruses - 72; Other Eukaryotes - 14061 (source: NCBI BLink). & (p54774|cdc48_soybn : 247.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 630.0) &  (original description: no original description)","protein_coding"
"Kfl00070_0050","kfl00070_0050_v1.1","Klebsormidium nitens","(at5g49840 : 87.8) ATP-dependent Clp protease; FUNCTIONS IN: unfolded protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), Clp protease, ATP-binding subunit ClpX (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: ATP-dependent Clp protease (TAIR:AT1G33360.1); Has 32248 Blast hits to 28333 proteins in 3078 species: Archae - 765; Bacteria - 18641; Metazoa - 1800; Fungi - 1278; Plants - 1157; Viruses - 4; Other Eukaryotes - 8603 (source: NCBI BLink). & (reliability: 175.6) &  (original description: no original description)","protein_coding"
"Kfl00071_0160","kfl00071_0160_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00079_0460","kfl00079_0460_v1.1","Klebsormidium nitens","(at1g33290 : 472.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73170.1); Has 745 Blast hits to 453 proteins in 163 species: Archae - 0; Bacteria - 369; Metazoa - 12; Fungi - 0; Plants - 203; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink). & (reliability: 944.0) &  (original description: no original description)","protein_coding"
"Kfl00081_0140","kfl00081_0140_v1.1","Klebsormidium nitens","(at3g15120 : 365.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: cell division cycle protein 48-related / CDC48-related (TAIR:AT1G05910.1); Has 80986 Blast hits to 58843 proteins in 3591 species: Archae - 1718; Bacteria - 20912; Metazoa - 22400; Fungi - 8848; Plants - 5536; Viruses - 480; Other Eukaryotes - 21092 (source: NCBI BLink). & (q96372|cdc48_capan : 155.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 730.0) &  (original description: no original description)","protein_coding"
"Kfl00083_0260","kfl00083_0260_v1.1","Klebsormidium nitens","(at1g05910 : 773.0) cell division cycle protein 48-related / CDC48-related; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G15120.1); Has 67654 Blast hits to 42823 proteins in 3246 species: Archae - 1526; Bacteria - 25275; Metazoa - 14857; Fungi - 7046; Plants - 4267; Viruses - 557; Other Eukaryotes - 14126 (source: NCBI BLink). & (p54774|cdc48_soybn : 215.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1546.0) &  (original description: no original description)","protein_coding"
"Kfl00088_0090","kfl00088_0090_v1.1","Klebsormidium nitens","(at1g73110 : 485.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATPase activity, ATP binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: rubisco activase (TAIR:AT2G39730.1); Has 469 Blast hits to 469 proteins in 170 species: Archae - 27; Bacteria - 71; Metazoa - 17; Fungi - 60; Plants - 256; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). & (o98997|rca_phaau : 317.0) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) - Phaseolus aureus (Mung bean) (Vigna radiata) & (reliability: 970.0) &  (original description: no original description)","protein_coding"
"Kfl00095_0050","kfl00095_0050_v1.1","Klebsormidium nitens","(at1g50250 : 850.0) encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes.; FTSH protease 1 (FTSH1); FUNCTIONS IN: metallopeptidase activity, protein binding, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: photosystem II repair, PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid lumen, chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT5G42270.1); Has 39789 Blast hits to 37355 proteins in 3308 species: Archae - 1512; Bacteria - 16133; Metazoa - 4957; Fungi - 3666; Plants - 3305; Viruses - 34; Other Eukaryotes - 10182 (source: NCBI BLink). & (q9bae0|ftsh_medsa : 849.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Medicago sativa (Alfalfa) & (reliability: 1700.0) &  (original description: no original description)","protein_coding"
"Kfl00097_0280","kfl00097_0280_v1.1","Klebsormidium nitens","(at5g53540 : 378.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G27680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p54774|cdc48_soybn : 162.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 756.0) &  (original description: no original description)","protein_coding"
"Kfl00100_0210","kfl00100_0210_v1.1","Klebsormidium nitens","(at3g02450 : 339.0) cell division protein ftsH, putative; FUNCTIONS IN: in 6 functions; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 43920 Blast hits to 41347 proteins in 3350 species: Archae - 1585; Bacteria - 19560; Metazoa - 4991; Fungi - 3838; Plants - 3354; Viruses - 31; Other Eukaryotes - 10561 (source: NCBI BLink). & (o82150|ftsh_tobac : 261.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco) & (reliability: 678.0) &  (original description: no original description)","protein_coding"
"Kfl00101_0070","kfl00101_0070_v1.1","Klebsormidium nitens","(at5g50920 : 1253.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p35100|clpc_pea : 1246.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (reliability: 2506.0) &  (original description: no original description)","protein_coding"
"Kfl00106_0060","kfl00106_0060_v1.1","Klebsormidium nitens","(at2g20140 : 736.0) AAA-type ATPase family protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: proteasome complex, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle AAA-ATPase 2A (TAIR:AT4G29040.1); Has 31279 Blast hits to 28945 proteins in 3121 species: Archae - 1433; Bacteria - 10368; Metazoa - 4867; Fungi - 3760; Plants - 3280; Viruses - 37; Other Eukaryotes - 7534 (source: NCBI BLink). & (p46466|prs4_orysa : 725.0) 26S protease regulatory subunit 4 homolog (TAT-binding protein homolog 2) - Oryza sativa (Rice) & (reliability: 1472.0) &  (original description: no original description)","protein_coding"
"Kfl00120_0270","kfl00120_0270_v1.1","Klebsormidium nitens","(at5g51070 : 840.0) ATP-dependent Clp protease regulatory subunit; EARLY RESPONSIVE TO DEHYDRATION 1 (ERD1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to water deprivation; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p35100|clpc_pea : 719.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (reliability: 1680.0) &  (original description: no original description)","protein_coding"
"Kfl00124_0070","kfl00124_0070_v1.1","Klebsormidium nitens","(at1g24290 : 284.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: shoot apex, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), ATPase, AAA-type, core (InterPro:IPR003959), MgsA AAA+ ATPase C-terminal (InterPro:IPR021886), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: replication factor C subunit 3 (TAIR:AT1G77470.1); Has 22422 Blast hits to 22383 proteins in 2992 species: Archae - 614; Bacteria - 15728; Metazoa - 553; Fungi - 700; Plants - 273; Viruses - 62; Other Eukaryotes - 4492 (source: NCBI BLink). & (reliability: 568.0) &  (original description: no original description)","protein_coding"
"Kfl00129_0010","kfl00129_0010_v1.1","Klebsormidium nitens","(at4g02480 : 322.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G02890.1); Has 36961 Blast hits to 32268 proteins in 3150 species: Archae - 1594; Bacteria - 13825; Metazoa - 4872; Fungi - 3636; Plants - 2887; Viruses - 35; Other Eukaryotes - 10112 (source: NCBI BLink). & (p54774|cdc48_soybn : 163.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 644.0) &  (original description: no original description)","protein_coding"
"Kfl00132_0250","kfl00132_0250_v1.1","Klebsormidium nitens","(at5g64580 : 406.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, metalloendopeptidase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 43409 Blast hits to 41131 proteins in 3311 species: Archae - 1622; Bacteria - 19384; Metazoa - 4934; Fungi - 3903; Plants - 3224; Viruses - 61; Other Eukaryotes - 10281 (source: NCBI BLink). & (o82150|ftsh_tobac : 228.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco) & (reliability: 812.0) &  (original description: no original description)","protein_coding"
"Kfl00136_0270","kfl00136_0270_v1.1","Klebsormidium nitens","(at1g07510 : 823.0) encodes an FtsH protease that is localized to the mitochondrion; FTSH protease 10 (ftsh10); FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: mitochondrion, chloroplast thylakoid membrane, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 3 (TAIR:AT2G29080.1); Has 37747 Blast hits to 35440 proteins in 3262 species: Archae - 1533; Bacteria - 14237; Metazoa - 4767; Fungi - 3643; Plants - 3223; Viruses - 27; Other Eukaryotes - 10317 (source: NCBI BLink). & (q5z974|ftsh_orysa : 398.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 1638.0) &  (original description: no original description)","protein_coding"
"Kfl00159_0050","kfl00159_0050_v1.1","Klebsormidium nitens","(at4g12620 : 434.0) Origin Recognition Complex subunit 1b. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with ORC2 and ORC5. Highly expressed in proliferating cells. Expression levels are independent of light regime.; origin of replication complex 1B (ORC1B); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Origin recognition complex, subunit 1 (InterPro:IPR020793), ATPase, AAA+ type, core (InterPro:IPR003593), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: origin recognition complex 1 (TAIR:AT4G14700.1); Has 5914 Blast hits to 5512 proteins in 383 species: Archae - 477; Bacteria - 4; Metazoa - 3209; Fungi - 806; Plants - 927; Viruses - 0; Other Eukaryotes - 491 (source: NCBI BLink). & (reliability: 866.0) &  (original description: no original description)","protein_coding"
"Kfl00201_0030","kfl00201_0030_v1.1","Klebsormidium nitens","(at3g01610 : 296.0) AAA-type ATPase - Over 90% homologous to CDC48a; cell division cycle 48C (CDC48C); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 65227 Blast hits to 39412 proteins in 3299 species: Archae - 1912; Bacteria - 27659; Metazoa - 8516; Fungi - 6329; Plants - 5583; Viruses - 58; Other Eukaryotes - 15170 (source: NCBI BLink). & (q96372|cdc48_capan : 287.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 572.0) &  (original description: no original description)","protein_coding"
"Kfl00201_0150","kfl00201_0150_v1.1","Klebsormidium nitens","(at2g30950 : 919.0) Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.; VARIEGATED 2 (VAR2); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: photoinhibition, oxygen and reactive oxygen species metabolic process, thylakoid membrane organization, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 42824 Blast hits to 40381 proteins in 3333 species: Archae - 1597; Bacteria - 18199; Metazoa - 4991; Fungi - 3835; Plants - 3350; Viruses - 34; Other Eukaryotes - 10818 (source: NCBI BLink). & (q5z974|ftsh_orysa : 516.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 1838.0) &  (original description: no original description)","protein_coding"
"Kfl00209_0140","kfl00209_0140_v1.1","Klebsormidium nitens","(at1g03000 : 464.0) Encodes an apparent ATPase similar to yeast and human protein required for peroxisomal biogenesis.  May facilitate recycling of PEX5, the peroxisomal matrix protein receptor, and thereby promote peroxisomal matrix protein import.; peroxin 6 (PEX6); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 36036 Blast hits to 31766 proteins in 3165 species: Archae - 1626; Bacteria - 13920; Metazoa - 5344; Fungi - 4031; Plants - 3389; Viruses - 33; Other Eukaryotes - 7693 (source: NCBI BLink). & (p54774|cdc48_soybn : 259.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 928.0) &  (original description: no original description)","protein_coding"
"Kfl00212_0060","kfl00212_0060_v1.1","Klebsormidium nitens","(at4g23940 : 379.0) FtsH extracellular protease family; FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q9bae0|ftsh_medsa : 278.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Medicago sativa (Alfalfa) & (reliability: 758.0) &  (original description: no original description)","protein_coding"
"Kfl00213_0030","kfl00213_0030_v1.1","Klebsormidium nitens","(at1g04730 : 462.0) Necessary for sister chromatid cohesion. Acts in synergy with ETG1.; CHROMOSOME TRANSMISSION FIDELITY 18 (CTF18); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: sister chromatid cohesion; LOCATED IN: replication fork; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: replication factor C1 (TAIR:AT5G22010.1); Has 4018 Blast hits to 4006 proteins in 709 species: Archae - 400; Bacteria - 666; Metazoa - 673; Fungi - 766; Plants - 379; Viruses - 21; Other Eukaryotes - 1113 (source: NCBI BLink). & (reliability: 924.0) &  (original description: no original description)","protein_coding"
"Kfl00217_0090","kfl00217_0090_v1.1","Klebsormidium nitens","(at5g26860 : 953.0) Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790).  Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells.  Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.; lon protease 1 (LON1); FUNCTIONS IN: serine-type peptidase activity, protein binding, ATP-dependent peptidase activity, ATP binding; INVOLVED IN: proteolysis; LOCATED IN: cytosol, mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Peptidase S16, active site (InterPro:IPR008268), Peptidase S16, ATP-dependent protease La (InterPro:IPR004815), Peptidase S16, lon N-terminal (InterPro:IPR003111), Peptidase S16, Lon C-terminal (InterPro:IPR008269), ATPase, AAA+ type, core (InterPro:IPR003593), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: lon protease 4 (TAIR:AT3G05790.1); Has 18238 Blast hits to 18056 proteins in 2534 species: Archae - 547; Bacteria - 9804; Metazoa - 746; Fungi - 600; Plants - 445; Viruses - 7; Other Eukaryotes - 6089 (source: NCBI BLink). & (p93648|lonh2_maize : 952.0) Lon protease homolog 2, mitochondrial precursor (EC 3.4.21.-) - Zea mays (Maize) & (reliability: 1906.0) &  (original description: no original description)","protein_coding"
"Kfl00219_0160","kfl00219_0160_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl00238_0010","kfl00238_0010_v1.1","Klebsormidium nitens","(at2g39730 : 589.0) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.; rubisco activase (RCA); FUNCTIONS IN: enzyme regulator activity, ADP binding, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to cold, response to light stimulus, defense response to bacterium; LOCATED IN: in 10 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73110.1); Has 2322 Blast hits to 2274 proteins in 510 species: Archae - 328; Bacteria - 451; Metazoa - 248; Fungi - 425; Plants - 405; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink). & (p93431|rca_orysa : 588.0) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) - Oryza sativa (Rice) & (reliability: 1178.0) &  (original description: no original description)","protein_coding"
"Kfl00238_0170","kfl00238_0170_v1.1","Klebsormidium nitens","(at1g02890 : 595.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), SMAD/FHA domain (InterPro:IPR008984); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT4G02480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q96372|cdc48_capan : 184.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 1190.0) &  (original description: no original description)","protein_coding"
"Kfl00241_0050","kfl00241_0050_v1.1","Klebsormidium nitens","(at3g50940 : 120.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: cytochrome BC1 synthesis (TAIR:AT3G50930.1); Has 22184 Blast hits to 20506 proteins in 2862 species: Archae - 1312; Bacteria - 7436; Metazoa - 3634; Fungi - 2857; Plants - 2601; Viruses - 34; Other Eukaryotes - 4310 (source: NCBI BLink). & (reliability: 240.0) &  (original description: no original description)","protein_coding"
"Kfl00246_0160","kfl00246_0160_v1.1","Klebsormidium nitens","(at1g73170 : 412.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATP-dependent peptidase activity, nucleotide binding, serine-type endopeptidase activity, ATP binding; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G10420.2); Has 1135 Blast hits to 1119 proteins in 483 species: Archae - 15; Bacteria - 797; Metazoa - 45; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink). & (reliability: 824.0) &  (original description: no original description)","protein_coding"
"Kfl00258_0080","kfl00258_0080_v1.1","Klebsormidium nitens","(at4g04910 : 848.0) N-ethylmaleimide sensitive factor; N-ethylmaleimide sensitive factor (NSF); FUNCTIONS IN: protein binding; LOCATED IN: vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30539 Blast hits to 27448 proteins in 3106 species: Archae - 1540; Bacteria - 10808; Metazoa - 4854; Fungi - 3637; Plants - 2891; Viruses - 27; Other Eukaryotes - 6782 (source: NCBI BLink). & (p54774|cdc48_soybn : 182.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1696.0) &  (original description: no original description)","protein_coding"
"Kfl00276_0050","kfl00276_0050_v1.1","Klebsormidium nitens","(at2g45500 : 343.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G27120.1); Has 35832 Blast hits to 33399 proteins in 3215 species: Archae - 1489; Bacteria - 15370; Metazoa - 4981; Fungi - 3599; Plants - 2905; Viruses - 24; Other Eukaryotes - 7464 (source: NCBI BLink). & (q96372|cdc48_capan : 127.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 686.0) &  (original description: no original description)","protein_coding"
"Kfl00284_0050","kfl00284_0050_v1.1","Klebsormidium nitens","(at4g04180 : 377.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, flower, pedicel, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G45000.1); Has 31547 Blast hits to 29327 proteins in 3060 species: Archae - 1473; Bacteria - 12216; Metazoa - 4656; Fungi - 3754; Plants - 2675; Viruses - 24; Other Eukaryotes - 6749 (source: NCBI BLink). & (p54774|cdc48_soybn : 123.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 754.0) &  (original description: no original description)","protein_coding"
"Kfl00292_0010","kfl00292_0010_v1.1","Klebsormidium nitens","(at1g45000 : 654.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: proteasome complex, plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A ATPase 4A (TAIR:AT5G43010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q9fxt9|prs7_orysa : 312.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Oryza sativa (Rice) & (reliability: 1308.0) &  (original description: no original description)","protein_coding"
"Kfl00311_0160","kfl00311_0160_v1.1","Klebsormidium nitens","(at5g16930 : 459.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Protein of unknown function DUF3523 (InterPro:IPR021911); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G03060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 910.0) &  (original description: no original description)","protein_coding"
"Kfl00352_0030","kfl00352_0030_v1.1","Klebsormidium nitens","(at1g80350 : 510.0) encodes a p60 katanin protein that is expressed throughout  the plant.  Required for the specification of cell fates from early in development (in the meristem)  through differentiation and for normal postmitotic organization of cortical microtubules into transverse arrays in root epidermis cells. Mutants display cytoskeletal defects.; ECTOPIC ROOT HAIR 3 (ERH3); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: trichome branching, cortical microtubule organization, multidimensional cell growth, plant-type cell wall biogenesis, microtubule cytoskeleton organization; LOCATED IN: katanin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G34560.1); Has 31677 Blast hits to 29370 proteins in 3124 species: Archae - 1478; Bacteria - 12054; Metazoa - 4742; Fungi - 3292; Plants - 2928; Viruses - 23; Other Eukaryotes - 7160 (source: NCBI BLink). & (q96372|cdc48_capan : 195.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 1020.0) &  (original description: no original description)","protein_coding"
"Kfl00355_0040","kfl00355_0040_v1.1","Klebsormidium nitens","(at1g77470 : 447.0) Encodes a protein with high homology to the Replication Factor C, Subunit 3 (RFC3) of yeast and other eukaryotes. rfc3 mutants are hypersensitive to salicylic acid and exhibit enhanced induction of PR genes and resistance against virulent oomycete Hyaloperonospora arabidopsidis Noco2. The enhanced pathogen resistance in the mutant is NPR1-independent.; replication factor C subunit 3 (RFC3); FUNCTIONS IN: in 6 functions; INVOLVED IN: negative regulation of defense response; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA)  (TAIR:AT1G21690.1); Has 17584 Blast hits to 17541 proteins in 2810 species: Archae - 637; Bacteria - 9895; Metazoa - 902; Fungi - 991; Plants - 392; Viruses - 88; Other Eukaryotes - 4679 (source: NCBI BLink). & (reliability: 894.0) &  (original description: no original description)","protein_coding"
"Kfl00356_0140","kfl00356_0140_v1.1","Klebsormidium nitens","(at5g58290 : 673.0) 26S proteasome AAA-ATPase subunit RPT3 (RPT3) mRNA,; regulatory particle triple-A ATPase 3 (RPT3); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, cell wall, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle AAA-ATPase 2A (TAIR:AT4G29040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p54778|prs6b_soltu : 658.0) 26S protease regulatory subunit 6B homolog - Solanum tuberosum (Potato) & (reliability: 1346.0) &  (original description: no original description)","protein_coding"
"Kfl00366_0060","kfl00366_0060_v1.1","Klebsormidium nitens","(at2g34560 : 382.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p54774|cdc48_soybn : 173.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 764.0) &  (original description: no original description)","protein_coding"
"Kfl00367_0060","kfl00367_0060_v1.1","Klebsormidium nitens","(at1g73170 : 257.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATP-dependent peptidase activity, nucleotide binding, serine-type endopeptidase activity, ATP binding; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G10420.2); Has 1135 Blast hits to 1119 proteins in 483 species: Archae - 15; Bacteria - 797; Metazoa - 45; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 156 (source: NCBI BLink). & (reliability: 514.0) &  (original description: no original description)","protein_coding"
"Kfl00370_0090","kfl00370_0090_v1.1","Klebsormidium nitens","(at2g27600 : 648.0) Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog.  Localized to the cytoplasm and to multivesicular endosomes.  Involved in multivesicular endosome function.; SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1 (SKD1); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: vesicle-mediated transport, endosome organization; LOCATED IN: cytoplasm, multivesicular body; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1); Has 30691 Blast hits to 28172 proteins in 3117 species: Archae - 1476; Bacteria - 10868; Metazoa - 5113; Fungi - 3519; Plants - 2854; Viruses - 27; Other Eukaryotes - 6834 (source: NCBI BLink). & (q96372|cdc48_capan : 172.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 1296.0) &  (original description: no original description)","protein_coding"
"Kfl00373_0140","kfl00373_0140_v1.1","Klebsormidium nitens","(at1g63160 : 486.0) replication factor C 2 (RFC2); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA)  (TAIR:AT1G21690.1); Has 17520 Blast hits to 17472 proteins in 2840 species: Archae - 620; Bacteria - 9832; Metazoa - 859; Fungi - 958; Plants - 372; Viruses - 89; Other Eukaryotes - 4790 (source: NCBI BLink). & (reliability: 972.0) &  (original description: no original description)","protein_coding"
"Kfl00387_0020","kfl00387_0020_v1.1","Klebsormidium nitens","(at5g15450 : 1248.0) Encodes a chloroplast-targeted Hsp101 homologue.  Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring thermotolerance to chloroplasts during heat stress.  APG6 is constitutively expressed in the root tips, the organ boundary region, the reproductive tissues of mature plants where plastids exist as proplastids, and slightly in the stems and leaves.  APG6 expression is upregulated in response to heat shock in various organs, but not in response to other abiotic stresses.  Apg6 mutants have a pale-green phenotype.; casein lytic proteinase B3 (CLPB3); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: chloroplast organization, response to heat; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpB (InterPro:IPR017730), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B4 (TAIR:AT2G25140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 771.0) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 2496.0) &  (original description: no original description)","protein_coding"
"Kfl00397_0030","kfl00397_0030_v1.1","Klebsormidium nitens","(at3g56690 : 337.0) encodes a protein similar to ATPases and binds to calmodulin in vitro. This is a single-copy gene and is expressed in all tissues examined.; Cam interacting protein 111 (CIP111); FUNCTIONS IN: ATPase activity, calmodulin binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 63578 Blast hits to 32942 proteins in 3240 species: Archae - 2541; Bacteria - 24762; Metazoa - 9322; Fungi - 6853; Plants - 5967; Viruses - 72; Other Eukaryotes - 14061 (source: NCBI BLink). & (p54774|cdc48_soybn : 201.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 674.0) &  (original description: no original description)","protein_coding"
"Kfl00466_0050","kfl00466_0050_v1.1","Klebsormidium nitens","(at2g26140 : 699.0) encodes an FtsH protease that is localized to the mitochondrion; FTSH protease 4 (ftsh4); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: mitochondrion, plastid, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: FTSH protease 11 (TAIR:AT5G53170.1); Has 39775 Blast hits to 37259 proteins in 3240 species: Archae - 1584; Bacteria - 15744; Metazoa - 5149; Fungi - 3764; Plants - 3335; Viruses - 40; Other Eukaryotes - 10159 (source: NCBI BLink). & (q5z974|ftsh_orysa : 340.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 1398.0) &  (original description: no original description)","protein_coding"
"Kfl00486_0040","kfl00486_0040_v1.1","Klebsormidium nitens","(at5g26860 : 352.0) Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790).  Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells.  Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.; lon protease 1 (LON1); FUNCTIONS IN: serine-type peptidase activity, protein binding, ATP-dependent peptidase activity, ATP binding; INVOLVED IN: proteolysis; LOCATED IN: cytosol, mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Peptidase S16, active site (InterPro:IPR008268), Peptidase S16, ATP-dependent protease La (InterPro:IPR004815), Peptidase S16, lon N-terminal (InterPro:IPR003111), Peptidase S16, Lon C-terminal (InterPro:IPR008269), ATPase, AAA+ type, core (InterPro:IPR003593), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: lon protease 4 (TAIR:AT3G05790.1); Has 18238 Blast hits to 18056 proteins in 2534 species: Archae - 547; Bacteria - 9804; Metazoa - 746; Fungi - 600; Plants - 445; Viruses - 7; Other Eukaryotes - 6089 (source: NCBI BLink). & (p93648|lonh2_maize : 349.0) Lon protease homolog 2, mitochondrial precursor (EC 3.4.21.-) - Zea mays (Maize) & (reliability: 704.0) &  (original description: no original description)","protein_coding"
"Kfl00507_0080","kfl00507_0080_v1.1","Klebsormidium nitens","(at1g77620 : 114.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding; INVOLVED IN: DNA repair, cell cycle; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Checkpoint protein Rad24 (InterPro:IPR004582), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: replication factor C1 (TAIR:AT5G22010.1); Has 1511 Blast hits to 1466 proteins in 328 species: Archae - 281; Bacteria - 0; Metazoa - 363; Fungi - 421; Plants - 133; Viruses - 9; Other Eukaryotes - 304 (source: NCBI BLink). & (reliability: 228.0) &  (original description: no original description)","protein_coding"
"Kfl00510_0030","kfl00510_0030_v1.1","Klebsormidium nitens","(at3g24530 : 248.0) AAA-type ATPase family protein / ankyrin repeat family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Ankyrin repeat-containing domain (InterPro:IPR020683), CbxX/CfqX (InterPro:IPR000641), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 1 in Arabidopsis thaliana (TAIR:AT2G28840.1); Has 62125 Blast hits to 27268 proteins in 1602 species: Archae - 369; Bacteria - 7189; Metazoa - 29752; Fungi - 5124; Plants - 2920; Viruses - 566; Other Eukaryotes - 16205 (source: NCBI BLink). & (reliability: 496.0) &  (original description: no original description)","protein_coding"
"Kfl00600_0010","kfl00600_0010_v1.1","Klebsormidium nitens","(at3g53230 : 104.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 102.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 208.0) &  (original description: no original description)","protein_coding"
"Kfl00606_0060","kfl00606_0060_v1.1","Klebsormidium nitens","(at5g03340 : 1347.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 1332.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 2694.0) &  (original description: no original description)","protein_coding"
"Kfl00717_0060","kfl00717_0060_v1.1","Klebsormidium nitens","(at5g22010 : 651.0) replication factor C1 (RFC1); FUNCTIONS IN: DNA clamp loader activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex, intracellular; CONTAINS InterPro DOMAIN/s: DNA replication factor RFC1, C-terminal (InterPro:IPR013725), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), DNA replication factor C, large subunit (InterPro:IPR012178), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G04730.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1302.0) &  (original description: no original description)","protein_coding"
"Kfl00802_0070","kfl00802_0070_v1.1","Klebsormidium nitens","(at3g47060 : 201.0) encodes an FtsH protease that is localized to the chloroplast; FTSH protease 7 (ftsh7); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 9 (TAIR:AT5G58870.1); Has 41243 Blast hits to 38738 proteins in 3322 species: Archae - 1531; Bacteria - 17472; Metazoa - 4873; Fungi - 3612; Plants - 3353; Viruses - 32; Other Eukaryotes - 10370 (source: NCBI BLink). & (o82150|ftsh_tobac : 199.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco) & (reliability: 402.0) &  (original description: no original description)","protein_coding"
"Kfl00865_0060","kfl00865_0060_v1.1","Klebsormidium nitens","(at3g24530 : 250.0) AAA-type ATPase family protein / ankyrin repeat family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Ankyrin repeat-containing domain (InterPro:IPR020683), CbxX/CfqX (InterPro:IPR000641), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 1 in Arabidopsis thaliana (TAIR:AT2G28840.1); Has 62125 Blast hits to 27268 proteins in 1602 species: Archae - 369; Bacteria - 7189; Metazoa - 29752; Fungi - 5124; Plants - 2920; Viruses - 566; Other Eukaryotes - 16205 (source: NCBI BLink). & (reliability: 500.0) &  (original description: no original description)","protein_coding"
"Kfl00964_0010","kfl00964_0010_v1.1","Klebsormidium nitens","(at5g53170 : 708.0) encodes an FtsH protease that is localized to the chloroplast and the mitochondrion; FTSH protease 11 (FTSH11); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: response to heat, PSII associated light-harvesting complex II catabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 4 (TAIR:AT2G26140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q5z974|ftsh_orysa : 379.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 1416.0) &  (original description: no original description)","protein_coding"
"Kfl01064_0050","kfl01064_0050_v1.1","Klebsormidium nitens","(at2g45500 : 127.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G27120.1); Has 35832 Blast hits to 33399 proteins in 3215 species: Archae - 1489; Bacteria - 15370; Metazoa - 4981; Fungi - 3599; Plants - 2905; Viruses - 24; Other Eukaryotes - 7464 (source: NCBI BLink). & (reliability: 254.0) &  (original description: no original description)","protein_coding"
"Kfl01127_0030","kfl01127_0030_v1.1","Klebsormidium nitens"," no hits & (original description: no original description)","protein_coding"
"Kfl01523_0020","kfl01523_0020_v1.1","Klebsormidium nitens","(at2g45500 : 171.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G27120.1); Has 35832 Blast hits to 33399 proteins in 3215 species: Archae - 1489; Bacteria - 15370; Metazoa - 4981; Fungi - 3599; Plants - 2905; Viruses - 24; Other Eukaryotes - 7464 (source: NCBI BLink). & (p54774|cdc48_soybn : 92.4) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 342.0) &  (original description: no original description)","protein_coding"
"LOC_Os01g04814","No alias","Oryza sativa","vacuolar protein sorting-associating protein 4B, putative, expressed","protein_coding"
"LOC_Os01g04840","No alias","Oryza sativa","vacuolar protein sorting-associating protein 4B, putative, expressed","protein_coding"
"LOC_Os01g12660","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os01g19260","No alias","Oryza sativa","ATPase, putative, expressed","protein_coding"
"LOC_Os01g39250","No alias","Oryza sativa","OsFtsH4  FtsH protease, homologue of AtFtsH4, expressed","protein_coding"
"LOC_Os01g39260","No alias","Oryza sativa","OsFtsH5  FtsH protease, homologue of AtFtsH4, expressed","protein_coding"
"LOC_Os01g42030","No alias","Oryza sativa","mitochondrial chaperone BCS1, putative, expressed","protein_coding"
"LOC_Os01g43150","No alias","Oryza sativa","OsFtsH9  FtsH protease, homologue of AtFtsH11, expressed","protein_coding"
"LOC_Os01g43480","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os01g45450","No alias","Oryza sativa","AAA family ATPase, putative, expressed","protein_coding"
"LOC_Os01g48270","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os01g49000","No alias","Oryza sativa","katanin p60 ATPase-containing subunit, putative, expressed","protein_coding"
"LOC_Os01g55260","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os01g62500","No alias","Oryza sativa","OsFtsH3  FtsH protease, homologue of AtFtsH3/10, expressed","protein_coding"
"LOC_Os01g66330","No alias","Oryza sativa","ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed","protein_coding"
"LOC_Os02g01820","No alias","Oryza sativa","ABC2 homolog 4, putative, expressed","protein_coding"
"LOC_Os02g06490","No alias","Oryza sativa","vacuolar protein sorting-associated protein 4, putative, expressed","protein_coding"
"LOC_Os02g08490","No alias","Oryza sativa","chaperone protein clpB 1, putative, expressed","protein_coding"
"LOC_Os02g10640","No alias","Oryza sativa","26S protease regulatory subunit, putative, expressed","protein_coding"
"LOC_Os02g11050","No alias","Oryza sativa","26S protease regulatory subunit, putative, expressed","protein_coding"
"LOC_Os02g16660","No alias","Oryza sativa","cbxX, chromosomal, putative, expressed","protein_coding"
"LOC_Os02g19150","No alias","Oryza sativa","AAA family ATPase, putative, expressed","protein_coding"
"LOC_Os02g19450","No alias","Oryza sativa","ATPase, AAA family protein, expressed","protein_coding"
"LOC_Os02g21970","No alias","Oryza sativa","26S protease regulatory subunit 6B, putative, expressed","protein_coding"
"LOC_Os02g32520","No alias","Oryza sativa","ERD1 protein, chloroplast precursor, putative, expressed","protein_coding"
"LOC_Os02g33420","No alias","Oryza sativa","ATPase, AAA family protein, expressed","protein_coding"
"LOC_Os02g35630","No alias","Oryza sativa","AAA family ATPase, putative, expressed","protein_coding"
"LOC_Os02g43350","No alias","Oryza sativa","OsFtsH7  FtsH protease, homologue of AtFtsH7, expressed","protein_coding"
"LOC_Os02g46990","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os02g47760","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os02g50680","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os02g51400","No alias","Oryza sativa","AAA family ATPase, putative, expressed","protein_coding"
"LOC_Os02g53500","No alias","Oryza sativa","RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed","protein_coding"
"LOC_Os02g54340","No alias","Oryza sativa","26S protease regulatory subunit 7, putative, expressed","protein_coding"
"LOC_Os02g56000","No alias","Oryza sativa","26S protease regulatory subunit 6A, putative, expressed","protein_coding"
"LOC_Os03g02330","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os03g05730","No alias","Oryza sativa","cell division control protein 48 homolog E, putative, expressed","protein_coding"
"LOC_Os03g15810","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os03g18690","No alias","Oryza sativa","26S protease regulatory subunit 4, putative, expressed","protein_coding"
"LOC_Os03g19350","No alias","Oryza sativa","OsLonP1 - Putative Lon protease homologue, expressed","protein_coding"
"LOC_Os03g22420","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os03g31300","No alias","Oryza sativa","chaperone protein clpB 1, putative, expressed","protein_coding"
"LOC_Os03g38800","No alias","Oryza sativa","AAA family ATPase, putative, expressed","protein_coding"
"LOC_Os03g58790","No alias","Oryza sativa","ATPase, putative, expressed","protein_coding"
"LOC_Os03g58800","No alias","Oryza sativa","ATPase, putative, expressed","protein_coding"
"LOC_Os04g21660","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os04g32560","No alias","Oryza sativa","ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed","protein_coding"
"LOC_Os04g33210","No alias","Oryza sativa","ERD1 protein, chloroplast precursor, putative, expressed","protein_coding"
"LOC_Os04g39190","No alias","Oryza sativa","cell division protease ftsH homolog 4, putative, expressed","protein_coding"
"LOC_Os04g40290","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os04g42110","No alias","Oryza sativa","cell division control protein 48 homolog B, putative, expressed","protein_coding"
"LOC_Os04g48060","No alias","Oryza sativa","RFC2 - Putative clamp loader of PCNA, replication factor C subunit 2, expressed","protein_coding"
"LOC_Os04g52690","No alias","Oryza sativa","AAA family ATPase, putative, expressed","protein_coding"
"LOC_Os04g56320","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os05g31220","No alias","Oryza sativa","cell division control protein 48 homolog B, putative, expressed","protein_coding"
"LOC_Os05g38400","No alias","Oryza sativa","OsFtsH8  FtsH protease, homologue of AtFtsH3/10, expressed","protein_coding"
"LOC_Os05g44310","No alias","Oryza sativa","vesicle-fusing ATPase, putative, expressed","protein_coding"
"LOC_Os05g44340","No alias","Oryza sativa","heat shock protein 101, putative, expressed","protein_coding"
"LOC_Os05g45750","No alias","Oryza sativa","ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed","protein_coding"
"LOC_Os05g50750","No alias","Oryza sativa","AAA family ATPase, putative, expressed","protein_coding"
"LOC_Os05g51130","No alias","Oryza sativa","mitochondrial chaperone BCS1, putative, expressed","protein_coding"
"LOC_Os06g01980","No alias","Oryza sativa","AAA family ATPase, putative, expressed","protein_coding"
"LOC_Os06g03940","No alias","Oryza sativa","spastin, putative, expressed","protein_coding"
"LOC_Os06g06190","No alias","Oryza sativa","uncharacterized protein ycf45, putative, expressed","protein_coding"
"LOC_Os06g07630","No alias","Oryza sativa","26S protease regulatory subunit 6A, putative, expressed","protein_coding"
"LOC_Os06g08790","No alias","Oryza sativa","ORC1 - Putative origin recognition complex subunit 1, expressed","protein_coding"
"LOC_Os06g09290","No alias","Oryza sativa","26S protease regulatory subunit 7, putative, expressed","protein_coding"
"LOC_Os06g12160","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os06g12370","No alias","Oryza sativa","OsFtsH6  FtsH protease, homologue of AtFtsH6, expressed","protein_coding"
"LOC_Os06g39870","No alias","Oryza sativa","26S protease regulatory subunit 8, putative, expressed","protein_coding"
"LOC_Os06g40560","No alias","Oryza sativa","26S protease regulatory subunit S10B, putative, expressed","protein_coding"
"LOC_Os06g45820","No alias","Oryza sativa","OsFtsH2  FtsH protease, homologue of AtFtsH2/8, expressed","protein_coding"
"LOC_Os06g48240","No alias","Oryza sativa","AAA ATPase, putative, expressed","protein_coding"
"LOC_Os06g48250","No alias","Oryza sativa","ATPase, putative, expressed","protein_coding"
"LOC_Os06g50050","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os06g51029","No alias","Oryza sativa","OsFtsH1  FtsH protease, homologue of AtFtsH1/5, expressed","protein_coding"
"LOC_Os07g08970","No alias","Oryza sativa","uncharacterized protein ycf45, putative, expressed","protein_coding"
"LOC_Os07g09420","No alias","Oryza sativa","ATPase, putative, expressed","protein_coding"
"LOC_Os07g09470","No alias","Oryza sativa","ATPase, putative, expressed","protein_coding"
"LOC_Os07g09480","No alias","Oryza sativa","ATPase, putative, expressed","protein_coding"
"LOC_Os07g09490","No alias","Oryza sativa","ATPase, putative, expressed","protein_coding"
"LOC_Os07g33390","No alias","Oryza sativa","BCS1 protein, putative, expressed","protein_coding"
"LOC_Os07g33410","No alias","Oryza sativa","ATPase, AAA family protein, expressed","protein_coding"
"LOC_Os07g47530","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os07g48960","No alias","Oryza sativa","OsLonP3 - Putative Lon protease homologue, expressed","protein_coding"
"LOC_Os07g49150","No alias","Oryza sativa","26S protease regulatory subunit 4, putative, expressed","protein_coding"
"LOC_Os08g31870","No alias","Oryza sativa","cell division cycle protein 48, putative, expressed","protein_coding"
"LOC_Os08g44240","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os09g26260","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os09g27340","No alias","Oryza sativa","ATPase, putative, expressed","protein_coding"
"LOC_Os09g33980","No alias","Oryza sativa","bromodomain protein 103, putative, expressed","protein_coding"
"LOC_Os09g36300","No alias","Oryza sativa","OsLonP4 - Putative Lon protease homologue, expressed","protein_coding"
"LOC_Os09g38730","No alias","Oryza sativa","26S protease regulatory subunit 6B, putative, expressed","protein_coding"
"LOC_Os09g39034","No alias","Oryza sativa","expressed protein","protein_coding"
"LOC_Os10g22700","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os10g30580","No alias","Oryza sativa","cell division control protein 48 homolog E, putative, expressed","protein_coding"
"LOC_Os10g37500","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os11g11340","No alias","Oryza sativa","CIP111, putative, expressed","protein_coding"
"LOC_Os11g16590","No alias","Oryza sativa","ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed","protein_coding"
"LOC_Os11g16770","No alias","Oryza sativa","ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,chloroplast precursor, putative, expressed","protein_coding"
"LOC_Os11g36390","No alias","Oryza sativa","RFC1 - Putative clamp loader of PCNA, replication factor C subunit 1, expressed","protein_coding"
"LOC_Os11g43970","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os11g47970","No alias","Oryza sativa","AAA-type ATPase family protein, putative, expressed","protein_coding"
"LOC_Os12g07720","No alias","Oryza sativa","RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed","protein_coding"
"LOC_Os12g10640","No alias","Oryza sativa","uncharacterized protein ycf45, putative, expressed","protein_coding"
"LOC_Os12g12850","No alias","Oryza sativa","ATP-dependent Clp protease ATP-binding subunit clpA homolog,chloroplast precursor, putative, expressed","protein_coding"
"LOC_Os12g24320","No alias","Oryza sativa","ATPase 3, putative, expressed","protein_coding"
"LOC_Os12g28137","No alias","Oryza sativa","ATPase 3, putative, expressed","protein_coding"
"LOC_Os12g28177","No alias","Oryza sativa","ATPase 3, putative, expressed","protein_coding"
"LOC_Os12g28460","No alias","Oryza sativa","ATPase, AAA family domain containing protein, expressed","protein_coding"
"LOC_Os12g28550","No alias","Oryza sativa","ATPase, AAA family domain containing protein, expressed","protein_coding"
"LOC_Os12g28590","No alias","Oryza sativa","ATPase 2, putative, expressed","protein_coding"
"LOC_Os12g33580","No alias","Oryza sativa","retrotransposon protein, putative, Ty3-gypsy subclass, expressed","protein_coding"
"LOC_Os12g44190","No alias","Oryza sativa","ATPase 3, putative, expressed","protein_coding"
"LOC_Os12g44210","No alias","Oryza sativa","ATPase, AAA family domain containing protein, expressed","protein_coding"
"LOC_Os12g44220","No alias","Oryza sativa","ATPase 2, putative, expressed","protein_coding"
"MA_10067279g0010","No alias","Picea abies","(at5g57480 : 392.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G25835.1); Has 17733 Blast hits to 16589 proteins in 2814 species: Archae - 1008; Bacteria - 6904; Metazoa - 2230; Fungi - 2111; Plants - 1942; Viruses - 24; Other Eukaryotes - 3514 (source: NCBI BLink). & (reliability: 784.0) &  (original description: no original description)","protein_coding"
"MA_10168585g0010","No alias","Picea abies","(at3g53230 : 1187.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 1186.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 2374.0) &  (original description: no original description)","protein_coding"
"MA_10203479g0010","No alias","Picea abies","(at5g58290 : 381.0) 26S proteasome AAA-ATPase subunit RPT3 (RPT3) mRNA,; regulatory particle triple-A ATPase 3 (RPT3); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, cell wall, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle AAA-ATPase 2A (TAIR:AT4G29040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p54778|prs6b_soltu : 368.0) 26S protease regulatory subunit 6B homolog - Solanum tuberosum (Potato) & (reliability: 762.0) &  (original description: no original description)","protein_coding"
"MA_10259968g0010","No alias","Picea abies","(at3g03060 : 218.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATPase activity, zinc ion binding; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Protein of unknown function DUF3523 (InterPro:IPR021911); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G16930.1); Has 38046 Blast hits to 31515 proteins in 3061 species: Archae - 1414; Bacteria - 11706; Metazoa - 8052; Fungi - 4459; Plants - 2737; Viruses - 110; Other Eukaryotes - 9568 (source: NCBI BLink). & (reliability: 436.0) &  (original description: no original description)","protein_coding"
"MA_10426157g0010","No alias","Picea abies","(at4g25835 : 328.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G57480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 656.0) &  (original description: no original description)","protein_coding"
"MA_10426246g0010","No alias","Picea abies","(at4g27680 : 421.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G53540.1); Has 30260 Blast hits to 27737 proteins in 3108 species: Archae - 1486; Bacteria - 10702; Metazoa - 4856; Fungi - 3534; Plants - 2690; Viruses - 34; Other Eukaryotes - 6958 (source: NCBI BLink). & (p54774|cdc48_soybn : 159.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 834.0) &  (original description: no original description)","protein_coding"
"MA_10427013g0010","No alias","Picea abies","(at5g19990 : 730.0) 26S proteasome AAA-ATPase subunit; regulatory particle triple-A ATPase 6A (RPT6A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G20000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (o64982|prs7_prupe : 340.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Prunus persica (Peach) & (reliability: 1460.0) &  (original description: no original description)","protein_coding"
"MA_10427039g0010","No alias","Picea abies","(at5g50920 : 1388.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p35100|clpc_pea : 1376.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (reliability: 2776.0) &  (original description: no original description)","protein_coding"
"MA_10427366g0010","No alias","Picea abies","(at2g03670 : 204.0) CDC48 - like protein  AAA-type ATPaseCell. division control protein 48 homolog B; cell division cycle 48B (CDC48B); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 56751 Blast hits to 29677 proteins in 3123 species: Archae - 2145; Bacteria - 19832; Metazoa - 8766; Fungi - 6476; Plants - 5731; Viruses - 66; Other Eukaryotes - 13735 (source: NCBI BLink). & (p54774|cdc48_soybn : 114.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 408.0) &  (original description: no original description)","protein_coding"
"MA_10427944g0010","No alias","Picea abies","(at3g10420 : 372.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73170.1); Has 1500 Blast hits to 1489 proteins in 625 species: Archae - 20; Bacteria - 1170; Metazoa - 12; Fungi - 5; Plants - 122; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink). & (reliability: 724.0) &  (original description: no original description)","protein_coding"
"MA_10428715g0010","No alias","Picea abies","(o64982|prs7_prupe : 805.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Prunus persica (Peach) & (at1g53750 : 791.0) 26S proteasome AAA-ATPase subunit RPT1a (RPT1a) mRNA,; regulatory particle triple-A 1A (RPT1A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (TAIR:AT1G53780.2); Has 30646 Blast hits to 28391 proteins in 3108 species: Archae - 1452; Bacteria - 10350; Metazoa - 4866; Fungi - 3564; Plants - 3128; Viruses - 30; Other Eukaryotes - 7256 (source: NCBI BLink). & (reliability: 1582.0) &  (original description: no original description)","protein_coding"
"MA_10430906g0010","No alias","Picea abies","(at1g03000 : 795.0) Encodes an apparent ATPase similar to yeast and human protein required for peroxisomal biogenesis.  May facilitate recycling of PEX5, the peroxisomal matrix protein receptor, and thereby promote peroxisomal matrix protein import.; peroxin 6 (PEX6); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 36036 Blast hits to 31766 proteins in 3165 species: Archae - 1626; Bacteria - 13920; Metazoa - 5344; Fungi - 4031; Plants - 3389; Viruses - 33; Other Eukaryotes - 7693 (source: NCBI BLink). & (p54774|cdc48_soybn : 269.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1590.0) &  (original description: no original description)","protein_coding"
"MA_10431316g0030","No alias","Picea abies","(at5g53540 : 413.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G27680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q96372|cdc48_capan : 167.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 826.0) &  (original description: no original description)","protein_coding"
"MA_10431395g0010","No alias","Picea abies","(at4g29040 : 788.0) 26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA,; regulatory particle AAA-ATPase 2A (RPT2a); FUNCTIONS IN: ATPase activity; INVOLVED IN: in 17 processes; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G20140.1); Has 31112 Blast hits to 28760 proteins in 3112 species: Archae - 1431; Bacteria - 10308; Metazoa - 4877; Fungi - 3744; Plants - 3214; Viruses - 41; Other Eukaryotes - 7497 (source: NCBI BLink). & (p46466|prs4_orysa : 781.0) 26S protease regulatory subunit 4 homolog (TAT-binding protein homolog 2) - Oryza sativa (Rice) & (reliability: 1576.0) &  (original description: no original description)","protein_coding"
"MA_10432357g0010","No alias","Picea abies","(at1g05910 : 1177.0) cell division cycle protein 48-related / CDC48-related; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G15120.1); Has 67654 Blast hits to 42823 proteins in 3246 species: Archae - 1526; Bacteria - 25275; Metazoa - 14857; Fungi - 7046; Plants - 4267; Viruses - 557; Other Eukaryotes - 14126 (source: NCBI BLink). & (p54774|cdc48_soybn : 214.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 2354.0) &  (original description: no original description)","protein_coding"
"MA_10432544g0010","No alias","Picea abies","(at5g57710 : 479.0) Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: response to karrikin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-2 (InterPro:IPR013093); BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G30350.1); Has 16657 Blast hits to 15152 proteins in 2785 species: Archae - 23; Bacteria - 13282; Metazoa - 28; Fungi - 336; Plants - 548; Viruses - 0; Other Eukaryotes - 2440 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 83.2) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 958.0) &  (original description: no original description)","protein_coding"
"MA_10433855g0010","No alias","Picea abies","(p93431|rca_orysa : 732.0) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) - Oryza sativa (Rice) & (at2g39730 : 707.0) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.; rubisco activase (RCA); FUNCTIONS IN: enzyme regulator activity, ADP binding, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to cold, response to light stimulus, defense response to bacterium; LOCATED IN: in 10 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73110.1); Has 2322 Blast hits to 2274 proteins in 510 species: Archae - 328; Bacteria - 451; Metazoa - 248; Fungi - 425; Plants - 405; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink). & (reliability: 1414.0) &  (original description: no original description)","protein_coding"
"MA_10433927g0010","No alias","Picea abies","(at3g24530 : 308.0) AAA-type ATPase family protein / ankyrin repeat family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Ankyrin repeat-containing domain (InterPro:IPR020683), CbxX/CfqX (InterPro:IPR000641), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 1 in Arabidopsis thaliana (TAIR:AT2G28840.1); Has 62125 Blast hits to 27268 proteins in 1602 species: Archae - 369; Bacteria - 7189; Metazoa - 29752; Fungi - 5124; Plants - 2920; Viruses - 566; Other Eukaryotes - 16205 (source: NCBI BLink). & (reliability: 616.0) &  (original description: no original description)","protein_coding"
"MA_10435210g0010","No alias","Picea abies","(at1g63160 : 207.0) replication factor C 2 (RFC2); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA)  (TAIR:AT1G21690.1); Has 17520 Blast hits to 17472 proteins in 2840 species: Archae - 620; Bacteria - 9832; Metazoa - 859; Fungi - 958; Plants - 372; Viruses - 89; Other Eukaryotes - 4790 (source: NCBI BLink). & (reliability: 414.0) &  (original description: no original description)","protein_coding"
"MA_10435321g0020","No alias","Picea abies","(at5g57480 : 572.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G25835.1); Has 17733 Blast hits to 16589 proteins in 2814 species: Archae - 1008; Bacteria - 6904; Metazoa - 2230; Fungi - 2111; Plants - 1942; Viruses - 24; Other Eukaryotes - 3514 (source: NCBI BLink). & (reliability: 1144.0) &  (original description: no original description)","protein_coding"
"MA_10435321g0030","No alias","Picea abies","(at5g57480 : 180.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G25835.1); Has 17733 Blast hits to 16589 proteins in 2814 species: Archae - 1008; Bacteria - 6904; Metazoa - 2230; Fungi - 2111; Plants - 1942; Viruses - 24; Other Eukaryotes - 3514 (source: NCBI BLink). & (reliability: 360.0) &  (original description: no original description)","protein_coding"
"MA_10435468g0020","No alias","Picea abies","(at3g28510 : 255.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28540.1); Has 37676 Blast hits to 28869 proteins in 2974 species: Archae - 1302; Bacteria - 8814; Metazoa - 8958; Fungi - 4310; Plants - 3042; Viruses - 177; Other Eukaryotes - 11073 (source: NCBI BLink). & (reliability: 510.0) &  (original description: no original description)","protein_coding"
"MA_10435556g0010","No alias","Picea abies","(q41365|prs7_spiol : 733.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Spinacia oleracea (Spinach) & (at1g53750 : 731.0) 26S proteasome AAA-ATPase subunit RPT1a (RPT1a) mRNA,; regulatory particle triple-A 1A (RPT1A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (TAIR:AT1G53780.2); Has 30646 Blast hits to 28391 proteins in 3108 species: Archae - 1452; Bacteria - 10350; Metazoa - 4866; Fungi - 3564; Plants - 3128; Viruses - 30; Other Eukaryotes - 7256 (source: NCBI BLink). & (reliability: 1462.0) &  (original description: no original description)","protein_coding"
"MA_10435616g0010","No alias","Picea abies","(at1g07510 : 379.0) encodes an FtsH protease that is localized to the mitochondrion; FTSH protease 10 (ftsh10); FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: mitochondrion, chloroplast thylakoid membrane, plastid; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 3 (TAIR:AT2G29080.1); Has 37747 Blast hits to 35440 proteins in 3262 species: Archae - 1533; Bacteria - 14237; Metazoa - 4767; Fungi - 3643; Plants - 3223; Viruses - 27; Other Eukaryotes - 10317 (source: NCBI BLink). & (q5z974|ftsh_orysa : 176.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 724.0) &  (original description: no original description)","protein_coding"
"MA_10435856g0010","No alias","Picea abies","(at4g23940 : 472.0) FtsH extracellular protease family; FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q5z974|ftsh_orysa : 144.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 944.0) &  (original description: no original description)","protein_coding"
"MA_10435935g0010","No alias","Picea abies","(at5g08470 : 362.0) an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals.; peroxisome 1 (PEX1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation, response to stress; LOCATED IN: peroxisome; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Aspartate decarboxylase-like fold (InterPro:IPR009010), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peroxisome biogenesis factor 1, N-terminal (InterPro:IPR015342); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 45022 Blast hits to 26157 proteins in 3042 species: Archae - 1897; Bacteria - 15808; Metazoa - 7500; Fungi - 5597; Plants - 4311; Viruses - 29; Other Eukaryotes - 9880 (source: NCBI BLink). & (p54774|cdc48_soybn : 188.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 724.0) &  (original description: no original description)","protein_coding"
"MA_10436343g0010","No alias","Picea abies","(at3g03060 : 270.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATPase activity, zinc ion binding; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Protein of unknown function DUF3523 (InterPro:IPR021911); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G16930.1); Has 38046 Blast hits to 31515 proteins in 3061 species: Archae - 1414; Bacteria - 11706; Metazoa - 8052; Fungi - 4459; Plants - 2737; Viruses - 110; Other Eukaryotes - 9568 (source: NCBI BLink). & (reliability: 540.0) &  (original description: no original description)","protein_coding"
"MA_105215g0010","No alias","Picea abies","(at5g51070 : 873.0) ATP-dependent Clp protease regulatory subunit; EARLY RESPONSIVE TO DEHYDRATION 1 (ERD1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to water deprivation; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p35100|clpc_pea : 657.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (reliability: 1746.0) &  (original description: no original description)","protein_coding"
"MA_113519g0010","No alias","Picea abies","(at1g04730 : 148.0) Necessary for sister chromatid cohesion. Acts in synergy with ETG1.; CHROMOSOME TRANSMISSION FIDELITY 18 (CTF18); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: sister chromatid cohesion; LOCATED IN: replication fork; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: replication factor C1 (TAIR:AT5G22010.1); Has 4018 Blast hits to 4006 proteins in 709 species: Archae - 400; Bacteria - 666; Metazoa - 673; Fungi - 766; Plants - 379; Viruses - 21; Other Eukaryotes - 1113 (source: NCBI BLink). & (reliability: 296.0) &  (original description: no original description)","protein_coding"
"MA_129762g0010","No alias","Picea abies","(at4g27680 : 473.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G53540.1); Has 30260 Blast hits to 27737 proteins in 3108 species: Archae - 1486; Bacteria - 10702; Metazoa - 4856; Fungi - 3534; Plants - 2690; Viruses - 34; Other Eukaryotes - 6958 (source: NCBI BLink). & (p54774|cdc48_soybn : 171.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 940.0) &  (original description: no original description)","protein_coding"
"MA_13350g0010","No alias","Picea abies","(at5g58290 : 339.0) 26S proteasome AAA-ATPase subunit RPT3 (RPT3) mRNA,; regulatory particle triple-A ATPase 3 (RPT3); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, cell wall, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle AAA-ATPase 2A (TAIR:AT4G29040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p54778|prs6b_soltu : 339.0) 26S protease regulatory subunit 6B homolog - Solanum tuberosum (Potato) & (reliability: 678.0) &  (original description: no original description)","protein_coding"
"MA_137771g0010","No alias","Picea abies","(at1g45000 : 620.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: proteasome complex, plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A ATPase 4A (TAIR:AT5G43010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (o64982|prs7_prupe : 322.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Prunus persica (Peach) & (reliability: 1240.0) &  (original description: no original description)","protein_coding"
"MA_140297g0010","No alias","Picea abies","(at2g27600 : 271.0) Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog.  Localized to the cytoplasm and to multivesicular endosomes.  Involved in multivesicular endosome function.; SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1 (SKD1); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: vesicle-mediated transport, endosome organization; LOCATED IN: cytoplasm, multivesicular body; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1); Has 30691 Blast hits to 28172 proteins in 3117 species: Archae - 1476; Bacteria - 10868; Metazoa - 5113; Fungi - 3519; Plants - 2854; Viruses - 27; Other Eukaryotes - 6834 (source: NCBI BLink). & (reliability: 542.0) &  (original description: no original description)","protein_coding"
"MA_14707g0010","No alias","Picea abies","(at2g30950 : 859.0) Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.; VARIEGATED 2 (VAR2); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: photoinhibition, oxygen and reactive oxygen species metabolic process, thylakoid membrane organization, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 42824 Blast hits to 40381 proteins in 3333 species: Archae - 1597; Bacteria - 18199; Metazoa - 4991; Fungi - 3835; Plants - 3350; Viruses - 34; Other Eukaryotes - 10818 (source: NCBI BLink). & (q9bae0|ftsh_medsa : 483.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Medicago sativa (Alfalfa) & (reliability: 1718.0) &  (original description: no original description)","protein_coding"
"MA_15290g0010","No alias","Picea abies","(at3g52490 : 251.0) Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; INVOLVED IN: protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G57710.1); Has 7668 Blast hits to 7397 proteins in 2358 species: Archae - 25; Bacteria - 6450; Metazoa - 2; Fungi - 186; Plants - 346; Viruses - 0; Other Eukaryotes - 659 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 89.0) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 502.0) &  (original description: no original description)","protein_coding"
"MA_165229g0020","No alias","Picea abies","(at4g25835 : 368.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G57480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 736.0) &  (original description: no original description)","protein_coding"
"MA_18615g0020","No alias","Picea abies","(at1g64110 : 968.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G28000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 176.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1936.0) &  (original description: no original description)","protein_coding"
"MA_188257g0010","No alias","Picea abies","(at1g06430 : 972.0) encodes a FtsH protease that is localized to the chloroplast; FTSH protease 8 (FTSH8); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1); Has 41562 Blast hits to 39150 proteins in 3282 species: Archae - 1592; Bacteria - 17123; Metazoa - 4966; Fungi - 3846; Plants - 3320; Viruses - 34; Other Eukaryotes - 10681 (source: NCBI BLink). & (o82150|ftsh_tobac : 470.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco) & (reliability: 1944.0) &  (original description: no original description)","protein_coding"
"MA_199195g0010","No alias","Picea abies","(at3g19740 : 276.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G50140.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 103.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 552.0) &  (original description: no original description)","protein_coding"
"MA_21130g0010","No alias","Picea abies","(q6f2y7|hs101_orysa : 1152.0) Heat shock protein 101 - Oryza sativa (Rice) & (at1g74310 : 1139.0) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101.  AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.; heat shock protein 101 (HSP101); FUNCTIONS IN: protein binding, ATPase activity, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 (TAIR:AT4G14670.1); Has 27671 Blast hits to 24472 proteins in 3146 species: Archae - 360; Bacteria - 17866; Metazoa - 1124; Fungi - 430; Plants - 707; Viruses - 13; Other Eukaryotes - 7171 (source: NCBI BLink). & (reliability: 2278.0) &  (original description: no original description)","protein_coding"
"MA_216982g0010","No alias","Picea abies","(at2g46620 : 373.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28580.1); Has 14567 Blast hits to 13858 proteins in 2196 species: Archae - 1075; Bacteria - 5270; Metazoa - 1990; Fungi - 1931; Plants - 1602; Viruses - 18; Other Eukaryotes - 2681 (source: NCBI BLink). & (reliability: 746.0) &  (original description: no original description)","protein_coding"
"MA_230170g0010","No alias","Picea abies","(at3g28580 : 223.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-ATPase 1 (TAIR:AT5G40010.1); Has 26015 Blast hits to 22183 proteins in 2894 species: Archae - 1297; Bacteria - 7409; Metazoa - 4737; Fungi - 2999; Plants - 2564; Viruses - 69; Other Eukaryotes - 6940 (source: NCBI BLink). & (reliability: 446.0) &  (original description: no original description)","protein_coding"
"MA_23842g0010","No alias","Picea abies","(at5g40010 : 366.0) AAA-ATPase 1 (AATP1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28580.1); Has 35875 Blast hits to 26437 proteins in 2942 species: Archae - 1242; Bacteria - 8120; Metazoa - 8429; Fungi - 4077; Plants - 2736; Viruses - 205; Other Eukaryotes - 11066 (source: NCBI BLink). & (reliability: 732.0) &  (original description: no original description)","protein_coding"
"MA_24945g0010","No alias","Picea abies","(at3g03060 : 331.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATPase activity, zinc ion binding; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Protein of unknown function DUF3523 (InterPro:IPR021911); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G16930.1); Has 38046 Blast hits to 31515 proteins in 3061 species: Archae - 1414; Bacteria - 11706; Metazoa - 8052; Fungi - 4459; Plants - 2737; Viruses - 110; Other Eukaryotes - 9568 (source: NCBI BLink). & (reliability: 662.0) &  (original description: no original description)","protein_coding"
"MA_26837g0010","No alias","Picea abies","(at3g56690 : 360.0) encodes a protein similar to ATPases and binds to calmodulin in vitro. This is a single-copy gene and is expressed in all tissues examined.; Cam interacting protein 111 (CIP111); FUNCTIONS IN: ATPase activity, calmodulin binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 63578 Blast hits to 32942 proteins in 3240 species: Archae - 2541; Bacteria - 24762; Metazoa - 9322; Fungi - 6853; Plants - 5967; Viruses - 72; Other Eukaryotes - 14061 (source: NCBI BLink). & (q96372|cdc48_capan : 200.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 720.0) &  (original description: no original description)","protein_coding"
"MA_270699g0010","No alias","Picea abies","(at3g53230 : 745.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 742.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1490.0) &  (original description: no original description)","protein_coding"
"MA_296237g0020","No alias","Picea abies","(at3g50930 : 157.0) cytochrome BC1 synthesis (BCS1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G50940.1); Has 21434 Blast hits to 19763 proteins in 2733 species: Archae - 1352; Bacteria - 7111; Metazoa - 3538; Fungi - 2773; Plants - 2474; Viruses - 30; Other Eukaryotes - 4156 (source: NCBI BLink). & (reliability: 314.0) &  (original description: no original description)","protein_coding"
"MA_31115g0010","No alias","Picea abies","(at5g51070 : 894.0) ATP-dependent Clp protease regulatory subunit; EARLY RESPONSIVE TO DEHYDRATION 1 (ERD1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to water deprivation; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p35100|clpc_pea : 676.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (reliability: 1788.0) &  (original description: no original description)","protein_coding"
"MA_344969g0010","No alias","Picea abies","(at4g25835 : 373.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G57480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 746.0) &  (original description: no original description)","protein_coding"
"MA_354684g0010","No alias","Picea abies","(at3g28510 : 341.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28540.1); Has 37676 Blast hits to 28869 proteins in 2974 species: Archae - 1302; Bacteria - 8814; Metazoa - 8958; Fungi - 4310; Plants - 3042; Viruses - 177; Other Eukaryotes - 11073 (source: NCBI BLink). & (reliability: 682.0) &  (original description: no original description)","protein_coding"
"MA_465725g0010","No alias","Picea abies","(at2g27600 : 310.0) Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog.  Localized to the cytoplasm and to multivesicular endosomes.  Involved in multivesicular endosome function.; SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1 (SKD1); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: vesicle-mediated transport, endosome organization; LOCATED IN: cytoplasm, multivesicular body; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1); Has 30691 Blast hits to 28172 proteins in 3117 species: Archae - 1476; Bacteria - 10868; Metazoa - 5113; Fungi - 3519; Plants - 2854; Viruses - 27; Other Eukaryotes - 6834 (source: NCBI BLink). & (reliability: 620.0) &  (original description: no original description)","protein_coding"
"MA_49831g0010","No alias","Picea abies","(at4g30250 : 305.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G57480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 610.0) &  (original description: no original description)","protein_coding"
"MA_58036g0010","No alias","Picea abies","(at4g12620 : 608.0) Origin Recognition Complex subunit 1b. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with ORC2 and ORC5. Highly expressed in proliferating cells. Expression levels are independent of light regime.; origin of replication complex 1B (ORC1B); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Origin recognition complex, subunit 1 (InterPro:IPR020793), ATPase, AAA+ type, core (InterPro:IPR003593), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: origin recognition complex 1 (TAIR:AT4G14700.1); Has 5914 Blast hits to 5512 proteins in 383 species: Archae - 477; Bacteria - 4; Metazoa - 3209; Fungi - 806; Plants - 927; Viruses - 0; Other Eukaryotes - 491 (source: NCBI BLink). & (reliability: 1202.0) &  (original description: no original description)","protein_coding"
"MA_596288g0010","No alias","Picea abies","(at5g50920 : 437.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p35100|clpc_pea : 436.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (reliability: 874.0) &  (original description: no original description)","protein_coding"
"MA_6277g0010","No alias","Picea abies","(at3g05530 : 343.0) Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle.  Essential for gametophyte development.  In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b.  RPT5a and RPT5b show accession-dependent functional redundancy.  In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.; regulatory particle triple-A ATPase 5A (RPT5A); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: 26S proteasome AAA-ATPase subunit RPT5B (TAIR:AT1G09100.1); Has 33265 Blast hits to 30927 proteins in 3145 species: Archae - 1437; Bacteria - 12044; Metazoa - 4947; Fungi - 3672; Plants - 3322; Viruses - 56; Other Eukaryotes - 7787 (source: NCBI BLink). & (p46465|prs6a_orysa : 343.0) 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) - Oryza sativa (Rice) & (reliability: 686.0) &  (original description: no original description)","protein_coding"
"MA_6352g0010","No alias","Picea abies","(at4g02480 : 389.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G02890.1); Has 36961 Blast hits to 32268 proteins in 3150 species: Archae - 1594; Bacteria - 13825; Metazoa - 4872; Fungi - 3636; Plants - 2887; Viruses - 35; Other Eukaryotes - 10112 (source: NCBI BLink). & (q96372|cdc48_capan : 142.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 778.0) &  (original description: no original description)","protein_coding"
"MA_686028g0010","No alias","Picea abies","(at5g03340 : 294.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 289.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 588.0) &  (original description: no original description)","protein_coding"
"MA_69227g0010","No alias","Picea abies","(at5g57480 : 537.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G25835.1); Has 17733 Blast hits to 16589 proteins in 2814 species: Archae - 1008; Bacteria - 6904; Metazoa - 2230; Fungi - 2111; Plants - 1942; Viruses - 24; Other Eukaryotes - 3514 (source: NCBI BLink). & (reliability: 1074.0) &  (original description: no original description)","protein_coding"
"MA_716242g0010","No alias","Picea abies","(at3g50930 : 135.0) cytochrome BC1 synthesis (BCS1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G50940.1); Has 21434 Blast hits to 19763 proteins in 2733 species: Archae - 1352; Bacteria - 7111; Metazoa - 3538; Fungi - 2773; Plants - 2474; Viruses - 30; Other Eukaryotes - 4156 (source: NCBI BLink). & (reliability: 270.0) &  (original description: no original description)","protein_coding"
"MA_74841g0010","No alias","Picea abies","(at5g58290 : 408.0) 26S proteasome AAA-ATPase subunit RPT3 (RPT3) mRNA,; regulatory particle triple-A ATPase 3 (RPT3); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, cell wall, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle AAA-ATPase 2A (TAIR:AT4G29040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p54778|prs6b_soltu : 407.0) 26S protease regulatory subunit 6B homolog - Solanum tuberosum (Potato) & (reliability: 816.0) &  (original description: no original description)","protein_coding"
"MA_749877g0010","No alias","Picea abies","(at5g57480 : 263.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G25835.1); Has 17733 Blast hits to 16589 proteins in 2814 species: Archae - 1008; Bacteria - 6904; Metazoa - 2230; Fungi - 2111; Plants - 1942; Viruses - 24; Other Eukaryotes - 3514 (source: NCBI BLink). & (reliability: 526.0) &  (original description: no original description)","protein_coding"
"MA_763g0010","No alias","Picea abies","(at2g25140 : 1061.0) Encodes ClpB4, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Targeted to the mitochondrion, also referred to as ClpB-m.  Transcripts of ClpB4 accumulate dramatically at high temperatures, suggesting that it may be involved in response to heat stress.; casein lytic proteinase B4 (CLPB4); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to heat; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpB (InterPro:IPR017730), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B3 (TAIR:AT5G15450.1); Has 30488 Blast hits to 27328 proteins in 3166 species: Archae - 421; Bacteria - 19864; Metazoa - 870; Fungi - 613; Plants - 740; Viruses - 7; Other Eukaryotes - 7973 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 691.0) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 2122.0) &  (original description: no original description)","protein_coding"
"MA_774966g0010","No alias","Picea abies","(at5g43010 : 223.0) 26S proteasome AAA-ATPase subunit RPT4a (RPT4a) mRNA,; regulatory particle triple-A ATPase 4A (RPT4A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, cell wall, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G45000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (o64982|prs7_prupe : 111.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Prunus persica (Peach) & (reliability: 446.0) &  (original description: no original description)","protein_coding"
"MA_8117g0010","No alias","Picea abies","(at5g50920 : 620.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p35100|clpc_pea : 614.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (reliability: 1240.0) &  (original description: no original description)","protein_coding"
"MA_824489g0010","No alias","Picea abies","(at3g09840 : 252.0) Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation.; cell division cycle 48 (CDC48); FUNCTIONS IN: ATPase activity, identical protein binding; INVOLVED IN: response to cadmium ion, pollen germination, pollen tube growth, cell division, phosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66378 Blast hits to 39099 proteins in 3298 species: Archae - 1713; Bacteria - 29252; Metazoa - 8676; Fungi - 6302; Plants - 5800; Viruses - 77; Other Eukaryotes - 14558 (source: NCBI BLink). & (p54774|cdc48_soybn : 248.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 504.0) &  (original description: no original description)","protein_coding"
"MA_8464559g0010","No alias","Picea abies","(at5g16930 : 137.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Protein of unknown function DUF3523 (InterPro:IPR021911); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G03060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 260.0) &  (original description: no original description)","protein_coding"
"MA_8475g0010","No alias","Picea abies","(at1g74310 : 741.0) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101.  AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.; heat shock protein 101 (HSP101); FUNCTIONS IN: protein binding, ATPase activity, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 (TAIR:AT4G14670.1); Has 27671 Blast hits to 24472 proteins in 3146 species: Archae - 360; Bacteria - 17866; Metazoa - 1124; Fungi - 430; Plants - 707; Viruses - 13; Other Eukaryotes - 7171 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 739.0) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 1482.0) &  (original description: no original description)","protein_coding"
"MA_8475g0020","No alias","Picea abies","(at2g25140 : 567.0) Encodes ClpB4, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Targeted to the mitochondrion, also referred to as ClpB-m.  Transcripts of ClpB4 accumulate dramatically at high temperatures, suggesting that it may be involved in response to heat stress.; casein lytic proteinase B4 (CLPB4); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to heat; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpB (InterPro:IPR017730), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B3 (TAIR:AT5G15450.1); Has 30488 Blast hits to 27328 proteins in 3166 species: Archae - 421; Bacteria - 19864; Metazoa - 870; Fungi - 613; Plants - 740; Viruses - 7; Other Eukaryotes - 7973 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 511.0) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 1134.0) &  (original description: no original description)","protein_coding"
"MA_8965097g0010","No alias","Picea abies","(at5g58290 : 406.0) 26S proteasome AAA-ATPase subunit RPT3 (RPT3) mRNA,; regulatory particle triple-A ATPase 3 (RPT3); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, cell wall, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle AAA-ATPase 2A (TAIR:AT4G29040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p54778|prs6b_soltu : 396.0) 26S protease regulatory subunit 6B homolog - Solanum tuberosum (Potato) & (reliability: 812.0) &  (original description: no original description)","protein_coding"
"MA_90280g0010","No alias","Picea abies","(at1g24290 : 300.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: shoot apex, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), ATPase, AAA-type, core (InterPro:IPR003959), MgsA AAA+ ATPase C-terminal (InterPro:IPR021886), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: replication factor C subunit 3 (TAIR:AT1G77470.1); Has 22422 Blast hits to 22383 proteins in 2992 species: Archae - 614; Bacteria - 15728; Metazoa - 553; Fungi - 700; Plants - 273; Viruses - 62; Other Eukaryotes - 4492 (source: NCBI BLink). & (reliability: 600.0) &  (original description: no original description)","protein_coding"
"MA_93106g0010","No alias","Picea abies","(at1g33290 : 325.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73170.1); Has 745 Blast hits to 453 proteins in 163 species: Archae - 0; Bacteria - 369; Metazoa - 12; Fungi - 0; Plants - 203; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink). & (reliability: 650.0) &  (original description: no original description)","protein_coding"
"MA_93384g0010","No alias","Picea abies","(at4g02480 : 1067.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G02890.1); Has 36961 Blast hits to 32268 proteins in 3150 species: Archae - 1594; Bacteria - 13825; Metazoa - 4872; Fungi - 3636; Plants - 2887; Viruses - 35; Other Eukaryotes - 10112 (source: NCBI BLink). & (p54774|cdc48_soybn : 171.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 2134.0) &  (original description: no original description)","protein_coding"
"MA_9824554g0010","No alias","Picea abies","(p54774|cdc48_soybn : 416.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 411.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 822.0) &  (original description: no original description)","protein_coding"
"MA_99905g0010","No alias","Picea abies","(p93431|rca_orysa : 687.0) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) - Oryza sativa (Rice) & (at2g39730 : 677.0) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.; rubisco activase (RCA); FUNCTIONS IN: enzyme regulator activity, ADP binding, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to cold, response to light stimulus, defense response to bacterium; LOCATED IN: in 10 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73110.1); Has 2322 Blast hits to 2274 proteins in 510 species: Archae - 328; Bacteria - 451; Metazoa - 248; Fungi - 425; Plants - 405; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink). & (reliability: 1354.0) &  (original description: no original description)","protein_coding"
"Mp1g00370.1","No alias","Marchantia polymorpha","ATPase component FIGL1 of FIGL1-FLIP meiotic crossover regulator complex","protein_coding"
"Mp1g02450.1","No alias","Marchantia polymorpha","platform ATPase (CDC48)","protein_coding"
"Mp1g02560.1","No alias","Marchantia polymorpha","chaperone component ClpC of chloroplast Clp-type protease complex","protein_coding"
"Mp1g04290.1","No alias","Marchantia polymorpha","regulatory component RPT6 of 26S proteasome","protein_coding"
"Mp1g05660.1","No alias","Marchantia polymorpha","ATPase family AAA domain-containing protein FIGL1 OS=Arabidopsis thaliana (sp|f4jex5|figl1_arath : 196.0)","protein_coding"
"Mp1g06470.1","No alias","Marchantia polymorpha","component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response heterodimer","protein_coding"
"Mp1g08840.1","No alias","Marchantia polymorpha","Chaperone protein ClpC2, chloroplastic OS=Arabidopsis thaliana (sp|q9sxj7|clpc2_arath : 191.0)","protein_coding"
"Mp1g09810.1","No alias","Marchantia polymorpha","platform ATPase (CDC48)","protein_coding"
"Mp1g11310.1","No alias","Marchantia polymorpha","component RFC4 of PCNA sliding clamp loader complex","protein_coding"
"Mp1g16450.1","No alias","Marchantia polymorpha","cytosolic chaperone (Hsp101)","protein_coding"
"Mp1g19790.1","No alias","Marchantia polymorpha","component FtsH7|9 of FtsH plastidial protease complexes","protein_coding"
"Mp1g25630.1","No alias","Marchantia polymorpha","platform ATPase (CDC48)","protein_coding"
"Mp1g25680.1","No alias","Marchantia polymorpha","protease (LON)","protein_coding"
"Mp1g25800.1","No alias","Marchantia polymorpha","chaperone component ClpX of mitochondrion Clp-type protease complex","protein_coding"
"Mp2g00420.1","No alias","Marchantia polymorpha","ATPase family AAA domain-containing protein At1g05910 OS=Arabidopsis thaliana (sp|f4iae9|y1591_arath : 861.0)","protein_coding"
"Mp2g03880.1","No alias","Marchantia polymorpha","component FtsH4|11 of FtsH mitochondrial protease complexes","protein_coding"
"Mp2g04090.1","No alias","Marchantia polymorpha","Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea (sp|p10871|rca_spiol : 337.0)","protein_coding"
"Mp2g04840.1","No alias","Marchantia polymorpha","regulatory component RPT1 of 26S proteasome","protein_coding"
"Mp2g11770.1","No alias","Marchantia polymorpha","Cell division cycle protein 48 homolog OS=Glycine max (sp|p54774|cdc48_soybn : 84.0)","protein_coding"
"Mp2g12350.1","No alias","Marchantia polymorpha","Calmodulin-interacting protein 111 OS=Arabidopsis thaliana (sp|q9let7|ci111_arath : 393.0)","protein_coding"
"Mp2g13350.1","No alias","Marchantia polymorpha","Calmodulin-interacting protein 111 OS=Arabidopsis thaliana (sp|q9let7|ci111_arath : 572.0)","protein_coding"
"Mp2g16010.1","No alias","Marchantia polymorpha","Replication factor C subunit 1 OS=Oryza sativa subsp. japonica (sp|q2r2b4|rfc1_orysj : 89.4)","protein_coding"
"Mp3g01020.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp3g02030.1","No alias","Marchantia polymorpha","component Fts3|10 of FtsH3|10 matrix-AAA protease heterodimers","protein_coding"
"Mp3g03990.1","No alias","Marchantia polymorpha","ATP-dependent activase involved in RuBisCo regulation","protein_coding"
"Mp3g06130.1","No alias","Marchantia polymorpha","component FtsH12 of protein translocation ATPase motor complex","protein_coding"
"Mp3g06170.1","No alias","Marchantia polymorpha","Enzyme classification.EC_3 hydrolases.EC_3.6 hydrolase acting on acid anhydride(50.3.6 : 394.7) & Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana (sp|q9sex2|ktna1_arath : 266.0)","protein_coding"
"Mp3g06310.1","No alias","Marchantia polymorpha","SMXL strigolactone signal transducer","protein_coding"
"Mp3g08790.1","No alias","Marchantia polymorpha","component FtsH1|2|5|6|8 of FtsH plastidial protease complexes","protein_coding"
"Mp3g09010.1","No alias","Marchantia polymorpha","organellar chaperone (Clp-p|Clp-m)","protein_coding"
"Mp3g09490.1","No alias","Marchantia polymorpha","regulatory component RPT5 of 26S proteasome","protein_coding"
"Mp3g10920.1","No alias","Marchantia polymorpha","Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana (sp|q9sex2|ktna1_arath : 212.0)","protein_coding"
"Mp3g11610.1","No alias","Marchantia polymorpha","component Pex6 of Pex1-Pex6 subcomplex","protein_coding"
"Mp3g20500.1","No alias","Marchantia polymorpha","Cell division control protein 48 homolog B OS=Arabidopsis thaliana (sp|q9zpr1|cd48b_arath : 612.0)","protein_coding"
"Mp3g22890.1","No alias","Marchantia polymorpha","ATPase family AAA domain-containing protein FIGL1 OS=Arabidopsis thaliana (sp|f4jex5|figl1_arath : 209.0)","protein_coding"
"Mp3g23230.1","No alias","Marchantia polymorpha","component RFC5 of PCNA sliding clamp loader complex","protein_coding"
"Mp3g24920.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp4g05840.1","No alias","Marchantia polymorpha","Cell division cycle protein 48 homolog OS=Capsicum annuum (sp|q96372|cdc48_capan : 125.0)","protein_coding"
"Mp4g17880.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp4g18200.1","No alias","Marchantia polymorpha","component ORC1 of origin recognition complex","protein_coding"
"Mp4g19200.1","No alias","Marchantia polymorpha","component FtsH1|2|5|6|8 of FtsH plastidial protease complexes","protein_coding"
"Mp4g20260.1","No alias","Marchantia polymorpha","catalytic component of Katanin ATP-dependent microtubule severing complex","protein_coding"
"Mp5g02750.1","No alias","Marchantia polymorpha","component FtsHi of protein translocation ATPase motor complex","protein_coding"
"Mp5g12690.1","No alias","Marchantia polymorpha","ATPase family AAA domain-containing protein FIGL1 OS=Arabidopsis thaliana (sp|f4jex5|figl1_arath : 208.0)","protein_coding"
"Mp5g14810.1","No alias","Marchantia polymorpha","chaperone component ClpD of chloroplast Clp-type protease complex","protein_coding"
"Mp5g18080.1","No alias","Marchantia polymorpha","meiotic crossover pachytene checkpoint protein (PCH2/CRC1)","protein_coding"
"Mp5g19750.1","No alias","Marchantia polymorpha","no description available(sp|a8iht2|drc11_chlre : 242.0)","protein_coding"
"Mp5g19800.1","No alias","Marchantia polymorpha","Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana (sp|q9sex2|ktna1_arath : 201.0)","protein_coding"
"Mp5g22990.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp6g00330.1","No alias","Marchantia polymorpha","Vesicle-fusing ATPase OS=Arabidopsis thaliana (sp|q9m0y8|nsf_arath : 933.0) & Enzyme classification.EC_3 hydrolases.EC_3.6 hydrolase acting on acid anhydride(50.3.6 : 877.3)","protein_coding"
"Mp6g01370.1","No alias","Marchantia polymorpha","Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic OS=Arabidopsis thaliana (sp|o22993|ftsi1_arath : 852.0)","protein_coding"
"Mp6g03280.1","No alias","Marchantia polymorpha","ATPase component FIGL1 of FIGL1-FLIP meiotic crossover regulator complex","protein_coding"
"Mp6g06650.1","No alias","Marchantia polymorpha","component Pex1 of Pex1-Pex6 subcomplex","protein_coding"
"Mp6g08350.1","No alias","Marchantia polymorpha","no hits & (original description: none)","protein_coding"
"Mp6g10290.1","No alias","Marchantia polymorpha","Probable inactive ATP-dependent zinc metalloprotease FTSHI 5, chloroplastic OS=Arabidopsis thaliana (sp|f4j3n2|ftsi5_arath : 758.0)","protein_coding"
"Mp6g10670.1","No alias","Marchantia polymorpha","component RFC2 of PCNA sliding clamp loader complex","protein_coding"
"Mp6g15080.1","No alias","Marchantia polymorpha","component FtsHi of protein translocation ATPase motor complex","protein_coding"
"Mp6g16470.1","No alias","Marchantia polymorpha","regulatory component RPT2 of 26S proteasome","protein_coding"
"Mp6g17110.1","No alias","Marchantia polymorpha","chaperone component ClpX of mitochondrion Clp-type protease complex","protein_coding"
"Mp7g14270.1","No alias","Marchantia polymorpha","regulatory component RPT4 of 26S proteasome","protein_coding"
"Mp7g18210.1","No alias","Marchantia polymorpha","component FtsH4|11 of FtsH mitochondrial protease complexes","protein_coding"
"Mp7g18570.1","No alias","Marchantia polymorpha","AAA-ATPase At4g25835 OS=Arabidopsis thaliana (sp|q8ry66|aatpd_arath : 407.0)","protein_coding"
"Mp8g01610.1","No alias","Marchantia polymorpha","ATPase component VPS4/SKD1 of VPS4-VTA1 ESCRT-disassembly complex","protein_coding"
"Mp8g05580.1","No alias","Marchantia polymorpha","component FtsHi of protein translocation ATPase motor complex","protein_coding"
"Mp8g10830.1","No alias","Marchantia polymorpha","regulatory component RPT3 of 26S proteasome","protein_coding"
"Mp8g17270.1","No alias","Marchantia polymorpha","component RFC1 of PCNA sliding clamp loader complex","protein_coding"
"Potri.001G037300","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.001G050300","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.001G089800","No alias","Populus trichocarpa","FtsH extracellular protease family","protein_coding"
"Potri.001G097600","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.001G128700","No alias","Populus trichocarpa","cell division cycle 48B","protein_coding"
"Potri.001G148400","No alias","Populus trichocarpa","lon protease 2","protein_coding"
"Potri.001G161700","No alias","Populus trichocarpa","regulatory particle triple-A 1A","protein_coding"
"Potri.001G174100","No alias","Populus trichocarpa","peroxisome 1","protein_coding"
"Potri.001G176900","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.001G213900","No alias","Populus trichocarpa","replication factor C1","protein_coding"
"Potri.001G231200","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.001G249100","No alias","Populus trichocarpa","FTSH protease 7","protein_coding"
"Potri.001G252500","No alias","Populus trichocarpa","Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.001G331200","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.001G331300","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.001G375900","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.001G392300","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.001G458200","No alias","Populus trichocarpa","AAA-type ATPase family protein","protein_coding"
"Potri.002G012000","No alias","Populus trichocarpa","FtsH extracellular protease family","protein_coding"
"Potri.002G031400","No alias","Populus trichocarpa","AAA-type ATPase family protein","protein_coding"
"Potri.002G032700","No alias","Populus trichocarpa","cytochrome BC1 synthesis","protein_coding"
"Potri.002G081200","No alias","Populus trichocarpa","replication factor C subunit 3","protein_coding"
"Potri.002G175600","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.002G205900","No alias","Populus trichocarpa","AAA-type ATPase family protein","protein_coding"
"Potri.002G214950","No alias","Populus trichocarpa","FTSH protease 8","protein_coding"
"Potri.002G215100","No alias","Populus trichocarpa","FtsH extracellular protease family","protein_coding"
"Potri.002G220200","No alias","Populus trichocarpa","FtsH extracellular protease family","protein_coding"
"Potri.002G252600","No alias","Populus trichocarpa","regulatory particle AAA-ATPase 2A","protein_coding"
"Potri.003G050600","No alias","Populus trichocarpa","AAA-type ATPase family protein","protein_coding"
"Potri.003G057800","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.003G086000","No alias","Populus trichocarpa","lon protease 2","protein_coding"
"Potri.003G123200","No alias","Populus trichocarpa","replication factor C 2","protein_coding"
"Potri.003G133700","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.004G004000","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.004G012500","No alias","Populus trichocarpa","AAA-ATPase 1","protein_coding"
"Potri.004G012700","No alias","Populus trichocarpa","AAA-ATPase 1","protein_coding"
"Potri.004G012800","No alias","Populus trichocarpa","AAA-ATPase 1","protein_coding"
"Potri.004G043900","No alias","Populus trichocarpa","AAA-type ATPase family protein","protein_coding"
"Potri.004G065100","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.004G091300","No alias","Populus trichocarpa","AAA-ATPase 1","protein_coding"
"Potri.004G091500","No alias","Populus trichocarpa","AAA-ATPase 1","protein_coding"
"Potri.004G106500","No alias","Populus trichocarpa","cell division protein ftsH, putative","protein_coding"
"Potri.004G124800","No alias","Populus trichocarpa","casein lytic proteinase B3","protein_coding"
"Potri.004G158600","No alias","Populus trichocarpa","AAA-type ATPase family protein","protein_coding"
"Potri.004G184500","No alias","Populus trichocarpa","AAA-type ATPase family protein","protein_coding"
"Potri.004G229400","No alias","Populus trichocarpa","ATP-dependent Clp protease","protein_coding"
"Potri.005G017600","No alias","Populus trichocarpa","lon protease 1","protein_coding"
"Potri.005G025100","No alias","Populus trichocarpa","regulatory particle triple-A ATPase 5A","protein_coding"
"Potri.005G059700","No alias","Populus trichocarpa","AAA-type ATPase family protein","protein_coding"
"Potri.005G093300","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.005G115200","No alias","Populus trichocarpa","cytochrome BC1 synthesis","protein_coding"
"Potri.005G119200","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.005G119900","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.005G177000","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.005G181300","No alias","Populus trichocarpa","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Potri.005G197400","No alias","Populus trichocarpa","Clp ATPase","protein_coding"
"Potri.005G231700","No alias","Populus trichocarpa","AAA-type ATPase family protein","protein_coding"
"Potri.005G249200","No alias","Populus trichocarpa","FtsH extracellular protease family","protein_coding"
"Potri.006G029000","No alias","Populus trichocarpa","regulatory particle triple-A ATPase 3","protein_coding"
"Potri.006G029700","No alias","Populus trichocarpa","regulatory particle triple-A ATPase 3","protein_coding"
"Potri.006G030900","No alias","Populus trichocarpa","regulatory particle triple-A ATPase 3","protein_coding"
"Potri.006G031000","No alias","Populus trichocarpa","regulatory particle triple-A ATPase 3","protein_coding"
"Potri.006G035000","No alias","Populus trichocarpa","Cam interacting protein 111","protein_coding"
"Potri.006G079000","No alias","Populus trichocarpa","ATPase, AAA-type, CDC48 protein","protein_coding"
"Potri.006G125500","No alias","Populus trichocarpa","ATPase, AAA-type, CDC48 protein","protein_coding"
"Potri.006G155100","No alias","Populus trichocarpa","regulatory particle triple-A ATPase 6A","protein_coding"
"Potri.006G156900","No alias","Populus trichocarpa","AAA-type ATPase family protein / ankyrin repeat family protein","protein_coding"
"Potri.006G158600","No alias","Populus trichocarpa","AAA-type ATPase family protein / ankyrin repeat family protein","protein_coding"
"Potri.006G169000","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.006G216600","No alias","Populus trichocarpa","regulatory particle triple-A 1A","protein_coding"
"Potri.006G227700","No alias","Populus trichocarpa","FTSH protease 4","protein_coding"
"Potri.006G262700","No alias","Populus trichocarpa","casein lytic proteinase B4","protein_coding"
"Potri.007G012400","No alias","Populus trichocarpa","cytochrome BC1 synthesis","protein_coding"
"Potri.007G019600","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.007G020500","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.007G020600","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.007G020800","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.007G020900","No alias","Populus trichocarpa","cytochrome BC1 synthesis","protein_coding"
"Potri.007G023900","No alias","Populus trichocarpa","AAA-type ATPase family protein","protein_coding"
"Potri.007G069800","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.007G127900","No alias","Populus trichocarpa","cell division cycle protein 48-related / CDC48-related","protein_coding"
"Potri.008G022300","No alias","Populus trichocarpa","AAA-type ATPase family protein","protein_coding"
"Potri.008G058500","No alias","Populus trichocarpa","rubisco activase","protein_coding"
"Potri.008G069100","No alias","Populus trichocarpa","Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.008G144100","No alias","Populus trichocarpa","regulatory particle triple-A ATPase 6A","protein_coding"
"Potri.008G177200","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.009G024400","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.009G033600","No alias","Populus trichocarpa","FTSH protease 10","protein_coding"
"Potri.009G043100","No alias","Populus trichocarpa","FTSH protease 7","protein_coding"
"Potri.009G046700","No alias","Populus trichocarpa","Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.009G054300","No alias","Populus trichocarpa","origin of replication complex 1B","protein_coding"
"Potri.009G119100","No alias","Populus trichocarpa","cytochrome BC1 synthesis","protein_coding"
"Potri.009G120500","No alias","Populus trichocarpa","regulatory particle triple-A ATPase 4A","protein_coding"
"Potri.009G144300","No alias","Populus trichocarpa","AAA-type ATPase family protein","protein_coding"
"Potri.010G009600","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.010G057901","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.010G098300","No alias","Populus trichocarpa","regulatory particle triple-A ATPase 6A","protein_coding"
"Potri.010G171300","No alias","Populus trichocarpa","FTSH protease 12","protein_coding"
"Potri.010G188200","No alias","Populus trichocarpa","Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.010G200500","No alias","Populus trichocarpa","rubisco activase","protein_coding"
"Potri.010G228600","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.010G237100","No alias","Populus trichocarpa","AAA-type ATPase family protein","protein_coding"
"Potri.011G052800","No alias","Populus trichocarpa","AAA-type ATPase family protein","protein_coding"
"Potri.011G054600","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.011G085200","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.011G111101","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.011G111200","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.011G141400","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.011G143300","No alias","Populus trichocarpa","AAA-type ATPase family protein","protein_coding"
"Potri.012G000700","No alias","Populus trichocarpa","FTSH protease 11","protein_coding"
"Potri.012G009300","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.012G015600","No alias","Populus trichocarpa","CLP protease regulatory subunit X","protein_coding"
"Potri.012G020800","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.012G024800","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.012G027101","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.012G027901","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.012G035400","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.012G072300","No alias","Populus trichocarpa","AAA-ATPase 1","protein_coding"
"Potri.012G086400","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.012G088200","No alias","Populus trichocarpa","ATPase, AAA-type, CDC48 protein","protein_coding"
"Potri.012G096300","No alias","Populus trichocarpa","AAA-type ATPase family protein","protein_coding"
"Potri.012G105900","No alias","Populus trichocarpa","CLPC homologue 1","protein_coding"
"Potri.012G112000","No alias","Populus trichocarpa","Clp ATPase","protein_coding"
"Potri.012G117400","No alias","Populus trichocarpa","regulatory particle triple-A ATPase 6A","protein_coding"
"Potri.013G008900","No alias","Populus trichocarpa","lon protease 1","protein_coding"
"Potri.013G016800","No alias","Populus trichocarpa","regulatory particle triple-A ATPase 5A","protein_coding"
"Potri.013G047900","No alias","Populus trichocarpa","AAA-ATPase 1","protein_coding"
"Potri.013G048700","No alias","Populus trichocarpa","FtsH extracellular protease family","protein_coding"
"Potri.013G089500","No alias","Populus trichocarpa","ATP-dependent Clp protease","protein_coding"
"Potri.013G138500","No alias","Populus trichocarpa","Chloroplast Ycf2;ATPase, AAA type, core","protein_coding"
"Potri.013G143400","No alias","Populus trichocarpa","Chloroplast Ycf2;ATPase, AAA type, core","protein_coding"
"Potri.013G151600","No alias","Populus trichocarpa","cell division cycle 48C","protein_coding"
"Potri.014G071900","No alias","Populus trichocarpa","AAA-type ATPase family protein","protein_coding"
"Potri.014G102300","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.014G131000","No alias","Populus trichocarpa","AAA-type ATPase family protein","protein_coding"
"Potri.014G133000","No alias","Populus trichocarpa","peroxin 6","protein_coding"
"Potri.014G139500","No alias","Populus trichocarpa","FtsH extracellular protease family","protein_coding"
"Potri.014G194700","No alias","Populus trichocarpa","regulatory particle AAA-ATPase 2A","protein_coding"
"Potri.015G007700","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.015G007800","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.015G012900","No alias","Populus trichocarpa","CLP protease regulatory subunit X","protein_coding"
"Potri.015G020700","No alias","Populus trichocarpa","FTSH protease 11","protein_coding"
"Potri.015G026900","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.015G056900","No alias","Populus trichocarpa","heat shock protein 101","protein_coding"
"Potri.015G057000","No alias","Populus trichocarpa","heat shock protein 101","protein_coding"
"Potri.015G067400","No alias","Populus trichocarpa","AAA-ATPase 1","protein_coding"
"Potri.015G080600","No alias","Populus trichocarpa","ATPase, AAA-type, CDC48 protein","protein_coding"
"Potri.015G084900","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.015G094100","No alias","Populus trichocarpa","AAA-type ATPase family protein","protein_coding"
"Potri.015G105100","No alias","Populus trichocarpa","CLPC homologue 1","protein_coding"
"Potri.015G110000","No alias","Populus trichocarpa","Clp ATPase","protein_coding"
"Potri.016G028000","No alias","Populus trichocarpa","regulatory particle triple-A ATPase 3","protein_coding"
"Potri.016G091600","No alias","Populus trichocarpa","ATPase, AAA-type, CDC48 protein","protein_coding"
"Potri.016G099800","No alias","Populus trichocarpa","FTSH protease 10","protein_coding"
"Potri.016G101100","No alias","Populus trichocarpa","rubisco activase","protein_coding"
"Potri.017G030900","No alias","Populus trichocarpa","cell division cycle protein 48-related / CDC48-related","protein_coding"
"Potri.017G084000","No alias","Populus trichocarpa","FTSH protease 6","protein_coding"
"Potri.017G090600","No alias","Populus trichocarpa","casein lytic proteinase B3","protein_coding"
"Potri.017G108200","No alias","Populus trichocarpa","ATPase, AAA-type, CDC48 protein","protein_coding"
"Potri.018G056600","No alias","Populus trichocarpa","regulatory particle triple-A 1A","protein_coding"
"Potri.018G056900","No alias","Populus trichocarpa","regulatory particle triple-A 1A","protein_coding"
"Potri.018G081000","No alias","Populus trichocarpa","AAA-type ATPase family protein / ankyrin repeat family protein","protein_coding"
"Potri.018G093600","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.019G020700","No alias","Populus trichocarpa","AAA-ATPase 1","protein_coding"
"Potri.019G020800","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.T104100","No alias","Populus trichocarpa","AAA-ATPase 1","protein_coding"
"Potri.T113600","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.T113801","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.T119300","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.T132000","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.T153600","No alias","Populus trichocarpa","AAA-type ATPase family protein","protein_coding"
"Potri.T168100","No alias","Populus trichocarpa","P-loop containing nucleoside triphosphate hydrolases superfamily protein","protein_coding"
"Potri.T171900","No alias","Populus trichocarpa","cytochrome BC1 synthesis","protein_coding"
"Potri.T172000","No alias","Populus trichocarpa","cytochrome BC1 synthesis","protein_coding"
"Pp1s106_174V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s108_16V6","No alias","Physcomitrella patens","atp binding","protein_coding"
"Pp1s109_234V6","No alias","Physcomitrella patens","26s proteasome subunit 4","protein_coding"
"Pp1s109_93V6","No alias","Physcomitrella patens","atp-dependent metalloprotease","protein_coding"
"Pp1s10_192V6","No alias","Physcomitrella patens","precursor of protein cell division protease ftsh-like protein","protein_coding"
"Pp1s10_296V6","No alias","Physcomitrella patens","atp-dependent metalloprotease","protein_coding"
"Pp1s115_6V6","No alias","Physcomitrella patens","transitional endoplasmic reticulum","protein_coding"
"Pp1s116_54V6","No alias","Physcomitrella patens","aaa-type atpase family protein","protein_coding"
"Pp1s118_166V6","No alias","Physcomitrella patens","aaa-metalloprotease chloroplast precursor","protein_coding"
"Pp1s11_171V6","No alias","Physcomitrella patens","atp binding nucleoside-triphosphatase nucleotide binding","protein_coding"
"Pp1s125_44V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s12_121V6","No alias","Physcomitrella patens","atp-dependent metalloprotease","protein_coding"
"Pp1s12_207V6","No alias","Physcomitrella patens","26s proteasome subunit 4","protein_coding"
"Pp1s133_13V6","No alias","Physcomitrella patens","transitional endoplasmic reticulum","protein_coding"
"Pp1s133_36V6","No alias","Physcomitrella patens","replication factor c (activator 1) 5","protein_coding"
"Pp1s13_419V6","No alias","Physcomitrella patens","26s protease regulatory subunit","protein_coding"
"Pp1s13_90V6","No alias","Physcomitrella patens","fidgetin-like 1","protein_coding"
"Pp1s146_88V6","No alias","Physcomitrella patens","atp-dependent protease-like protein","protein_coding"
"Pp1s147_100V6","No alias","Physcomitrella patens","26s protease regulatory subunit 6b","protein_coding"
"Pp1s150_90V6","No alias","Physcomitrella patens","atp binding","protein_coding"
"Pp1s152_13V6","No alias","Physcomitrella patens","26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) [Oryza sativa]","protein_coding"
"Pp1s156_30V6","No alias","Physcomitrella patens","cell division protein","protein_coding"
"Pp1s161_111V6","No alias","Physcomitrella patens","atp-dependent metalloprotease","protein_coding"
"Pp1s163_100V6","No alias","Physcomitrella patens","atp-dependent clp protease atp-binding subunit","protein_coding"
"Pp1s16_272V6","No alias","Physcomitrella patens","werner helicase interacting protein 1","protein_coding"
"Pp1s171_84V6","No alias","Physcomitrella patens","atp-dependent clp protease atp-binding subunit","protein_coding"
"Pp1s178_66V6","No alias","Physcomitrella patens","aaa-metalloprotease chloroplast precursor","protein_coding"
"Pp1s180_35V6","No alias","Physcomitrella patens","contains ESTs D28306(R1928A),AU164668(R1928) [Oryza sativa (japonica cultivar-group)]","protein_coding"
"Pp1s196_10V6","No alias","Physcomitrella patens","chaperone clpb expressed","protein_coding"
"Pp1s199_129V6","No alias","Physcomitrella patens","ribulose bisphosphate carboxylase oxygenase activase chloroplast","protein_coding"
"Pp1s199_130V6","No alias","Physcomitrella patens","ribulose bisphosphate carboxylase oxygenase chloroplast expressed","protein_coding"
"Pp1s19_358V6","No alias","Physcomitrella patens","nuclear vcp-like","protein_coding"
"Pp1s200_72V6","No alias","Physcomitrella patens","aaa-atpase of vps4 skd1 family","protein_coding"
"Pp1s201_11V6","No alias","Physcomitrella patens","cell division protein","protein_coding"
"Pp1s213_118V6","No alias","Physcomitrella patens","katanin p60 atpase-containing","protein_coding"
"Pp1s213_38V6","No alias","Physcomitrella patens","transitional endoplasmic reticulum","protein_coding"
"Pp1s217_30V6","No alias","Physcomitrella patens","transitional endoplasmic reticulum","protein_coding"
"Pp1s218_133V6","No alias","Physcomitrella patens","at1g09100 f7g19_2","protein_coding"
"Pp1s223_114V6","No alias","Physcomitrella patens","T5M16.21; expressed protein [Arabidopsis thaliana]","protein_coding"
"Pp1s223_127V6","No alias","Physcomitrella patens","atp-dependent metalloprotease","protein_coding"
"Pp1s225_68V6","No alias","Physcomitrella patens","replication factor c (activator 1) 145kda","protein_coding"
"Pp1s228_21V6","No alias","Physcomitrella patens","aaa family cdc48 subfamily","protein_coding"
"Pp1s23_102V6","No alias","Physcomitrella patens","atpase aaa-2 domain protein","protein_coding"
"Pp1s23_154V6","No alias","Physcomitrella patens","contains ESTs D28306(R1928A),AU164668(R1928) [Oryza sativa (japonica cultivar-group)]","protein_coding"
"Pp1s243_67V6","No alias","Physcomitrella patens","26s protease regulatory subunit 6b","protein_coding"
"Pp1s244_85V6","No alias","Physcomitrella patens","ribulose bisphosphate carboxylase oxygenase activase chloroplast","protein_coding"
"Pp1s245_16V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s245_17V6","No alias","Physcomitrella patens","26s proteasome aaa-atpase subunit rpt6a","protein_coding"
"Pp1s248_7V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s252_87V6","No alias","Physcomitrella patens","atpase aaa-2 domain protein","protein_coding"
"Pp1s258_44V6","No alias","Physcomitrella patens","ribulose bisphosphate carboxylase oxygenase activase chloroplast","protein_coding"
"Pp1s262_92V6","No alias","Physcomitrella patens","heat shock protein atpase subunit","protein_coding"
"Pp1s267_81V6","No alias","Physcomitrella patens","aaa-metalloprotease chloroplast precursor","protein_coding"
"Pp1s27_195V6","No alias","Physcomitrella patens","atp binding","protein_coding"
"Pp1s27_248V6","No alias","Physcomitrella patens","atp-dependent clp protease","protein_coding"
"Pp1s285_12V6","No alias","Physcomitrella patens","peroxisome biogenesis","protein_coding"
"Pp1s286_51V6","No alias","Physcomitrella patens","mitochondrial protein","protein_coding"
"Pp1s28_198V6","No alias","Physcomitrella patens","atp binding","protein_coding"
"Pp1s28_203V6","No alias","Physcomitrella patens","atp binding","protein_coding"
"Pp1s296_11V6","No alias","Physcomitrella patens","F8A24.11; cell division cycle protein 48 (CDC48A) (CDC48) [Arabidopsis thaliana]","protein_coding"
"Pp1s29_103V6","No alias","Physcomitrella patens","lon peptidase peroxisomal","protein_coding"
"Pp1s29_307V6","No alias","Physcomitrella patens","T29A15.170; MSP1 protein, putative / intramitochondrial sorting protein, putative [Arabidopsis thaliana]","protein_coding"
"Pp1s2_151V6","No alias","Physcomitrella patens","heat shock protein atpase subunit","protein_coding"
"Pp1s2_25V6","No alias","Physcomitrella patens","chromosome transmission fidelity","protein_coding"
"Pp1s300_28V6","No alias","Physcomitrella patens","atp binding","protein_coding"
"Pp1s300_55V6","No alias","Physcomitrella patens","heat shock protein 101","protein_coding"
"Pp1s30_346V6","No alias","Physcomitrella patens","n-ethylmaleimide sensitive fusion protein","protein_coding"
"Pp1s325_27V6","No alias","Physcomitrella patens","atp binding","protein_coding"
"Pp1s3364_1V6","No alias","Physcomitrella patens","vesicle-fusing atpase","protein_coding"
"Pp1s336_26V6","No alias","Physcomitrella patens","n-ethylmaleimide sensitive fusion protein","protein_coding"
"Pp1s33_284V6","No alias","Physcomitrella patens","aaa family atpase","protein_coding"
"Pp1s340_7V6","No alias","Physcomitrella patens","at1g09100 f7g19_2","protein_coding"
"Pp1s346_22V6","No alias","Physcomitrella patens","T9I4.16; FtsH protease, putative [EC:3.4.24.-] [Arabidopsis thaliana]","protein_coding"
"Pp1s36_183V6","No alias","Physcomitrella patens","26s protease regulatory subunit 6b","protein_coding"
"Pp1s378_41V6","No alias","Physcomitrella patens","ribulose bisphosphate carboxylase oxygenase chloroplast","protein_coding"
"Pp1s39_149V6","No alias","Physcomitrella patens","T9I4.16; FtsH protease, putative [EC:3.4.24.-] [Arabidopsis thaliana]","protein_coding"
"Pp1s3_184V6","No alias","Physcomitrella patens","atp binding","protein_coding"
"Pp1s3_193V6","No alias","Physcomitrella patens","atp binding atpase nucleoside-triphosphatase nucleotide binding","protein_coding"
"Pp1s3_208V6","No alias","Physcomitrella patens","atp-dependent clp protease","protein_coding"
"Pp1s411_7V6","No alias","Physcomitrella patens","aaa family","protein_coding"
"Pp1s42_171V6","No alias","Physcomitrella patens","cell division protein","protein_coding"
"Pp1s44_156V6","No alias","Physcomitrella patens","bromodomain protein","protein_coding"
"Pp1s44_78V6","No alias","Physcomitrella patens","cell division protein 2","protein_coding"
"Pp1s455_6V6","No alias","Physcomitrella patens","aaa atpase central domain protein","protein_coding"
"Pp1s456_6V6","No alias","Physcomitrella patens","T9I4.16; FtsH protease, putative [EC:3.4.24.-] [Arabidopsis thaliana]","protein_coding"
"Pp1s47_46V6","No alias","Physcomitrella patens","26s protease regulatory subunit","protein_coding"
"Pp1s49_256V6","No alias","Physcomitrella patens","26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) [Oryza sativa]","protein_coding"
"Pp1s4_120V6","No alias","Physcomitrella patens","replication factor subunit 2","protein_coding"
"Pp1s4_277V6","No alias","Physcomitrella patens","26s proteasome subunit 4","protein_coding"
"Pp1s51_233V6","No alias","Physcomitrella patens","katanin p60 atpase-containing","protein_coding"
"Pp1s526_5V6","No alias","Physcomitrella patens","heat shock protein atpase subunit","protein_coding"
"Pp1s53_157V6","No alias","Physcomitrella patens","aaa family cdc48 subfamily","protein_coding"
"Pp1s54_54V6","No alias","Physcomitrella patens","aaa family","protein_coding"
"Pp1s58_200V6","No alias","Physcomitrella patens","lon peptidase peroxisomal","protein_coding"
"Pp1s59_355V6","No alias","Physcomitrella patens","atp binding","protein_coding"
"Pp1s5_15V6","No alias","Physcomitrella patens","atp-dependent proteinase lon2","protein_coding"
"Pp1s5_54V6","No alias","Physcomitrella patens","atp-dependent clp","protein_coding"
"Pp1s5_83V6","No alias","Physcomitrella patens","ribulose bisphosphate carboxylase oxygenase activase chloroplast","protein_coding"
"Pp1s62_161V6","No alias","Physcomitrella patens","chaperone clpb expressed","protein_coding"
"Pp1s64_85V6","No alias","Physcomitrella patens","atp binding atpase nucleoside-triphosphatase nucleotide binding","protein_coding"
"Pp1s65_271V6","No alias","Physcomitrella patens","cell division protein","protein_coding"
"Pp1s68_6V6","No alias","Physcomitrella patens","likely peroxisomal biogenesis aaa atpase pex6","protein_coding"
"Pp1s6935_1V6","No alias","Physcomitrella patens","aaa atpase central domain protein","protein_coding"
"Pp1s7016_1V6","No alias","Physcomitrella patens","26s protease regulatory","protein_coding"
"Pp1s76_197V6","No alias","Physcomitrella patens","aaa-atpase of vps4 skd1 family","protein_coding"
"Pp1s78_141V6","No alias","Physcomitrella patens","heat shock","protein_coding"
"Pp1s79_171V6","No alias","Physcomitrella patens","26s protease regulatory subunit 6b","protein_coding"
"Pp1s79_225V6","No alias","Physcomitrella patens","lon peptidase peroxisomal","protein_coding"
"Pp1s7_347V6","No alias","Physcomitrella patens","chromosome 17 open reading frame 27","protein_coding"
"Pp1s81_51V6","No alias","Physcomitrella patens","atpase aaa-2 domain protein","protein_coding"
"Pp1s82_108V6","No alias","Physcomitrella patens","bromodomain protein","protein_coding"
"Pp1s83_145V6","No alias","Physcomitrella patens","No description available","protein_coding"
"Pp1s83_97V6","No alias","Physcomitrella patens","aaa family atpase","protein_coding"
"Pp1s88_195V6","No alias","Physcomitrella patens","atpase aaa-2 domain protein","protein_coding"
"Pp1s90_96V6","No alias","Physcomitrella patens","origin recognition complex subunit 1-like protein","protein_coding"
"Pp1s91_100V6","No alias","Physcomitrella patens","iq motif containing with aaa domain","protein_coding"
"Pp1s91_182V6","No alias","Physcomitrella patens","26s protease regulatory subunit","protein_coding"
"Pp1s91_37V6","No alias","Physcomitrella patens","chaperone clpb expressed","protein_coding"
"Pp1s96_143V6","No alias","Physcomitrella patens","replication factor c (activator 1)37kda","protein_coding"
"Pp1s97_154V6","No alias","Physcomitrella patens","transitional endoplasmic reticulum","protein_coding"
"Pp1s98_222V6","No alias","Physcomitrella patens","atp-dependent clp protease atp-binding subunit","protein_coding"
"Pp1s99_113V6","No alias","Physcomitrella patens","katanin p60 atpase-containing","protein_coding"
"Pp1s99_139V6","No alias","Physcomitrella patens","transitional endoplasmic reticulum","protein_coding"
"Pp1s9_115V6","No alias","Physcomitrella patens","cell division protein","protein_coding"
"Pp1s9_238V6","No alias","Physcomitrella patens","MFH8.11; FtsH protease, putative [Arabidopsis thaliana]","protein_coding"
"PSME_00000131-RA","No alias","Pseudotsuga menziesii","(at5g50920 : 1361.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p35100|clpc_pea : 1356.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (reliability: 2722.0) &  (original description: no original description)","protein_coding"
"PSME_00000181-RA","No alias","Pseudotsuga menziesii","(at1g45000 : 726.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: proteasome complex, plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A ATPase 4A (TAIR:AT5G43010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q9fxt9|prs7_orysa : 323.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Oryza sativa (Rice) & (reliability: 1452.0) &  (original description: no original description)","protein_coding"
"PSME_00000462-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 420.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 417.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 834.0) &  (original description: no original description)","protein_coding"
"PSME_00000476-RA","No alias","Pseudotsuga menziesii","(q6f2y7|hs101_orysa : 1375.0) Heat shock protein 101 - Oryza sativa (Rice) & (at1g74310 : 1319.0) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101.  AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.; heat shock protein 101 (HSP101); FUNCTIONS IN: protein binding, ATPase activity, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 (TAIR:AT4G14670.1); Has 27671 Blast hits to 24472 proteins in 3146 species: Archae - 360; Bacteria - 17866; Metazoa - 1124; Fungi - 430; Plants - 707; Viruses - 13; Other Eukaryotes - 7171 (source: NCBI BLink). & (reliability: 2638.0) &  (original description: no original description)","protein_coding"
"PSME_00000477-RA","No alias","Pseudotsuga menziesii","(q6f2y7|hs101_orysa : 1387.0) Heat shock protein 101 - Oryza sativa (Rice) & (at1g74310 : 1348.0) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101.  AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.; heat shock protein 101 (HSP101); FUNCTIONS IN: protein binding, ATPase activity, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 (TAIR:AT4G14670.1); Has 27671 Blast hits to 24472 proteins in 3146 species: Archae - 360; Bacteria - 17866; Metazoa - 1124; Fungi - 430; Plants - 707; Viruses - 13; Other Eukaryotes - 7171 (source: NCBI BLink). & (reliability: 2696.0) &  (original description: no original description)","protein_coding"
"PSME_00001604-RA","No alias","Pseudotsuga menziesii","(at3g24530 : 512.0) AAA-type ATPase family protein / ankyrin repeat family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Ankyrin repeat-containing domain (InterPro:IPR020683), CbxX/CfqX (InterPro:IPR000641), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 1 in Arabidopsis thaliana (TAIR:AT2G28840.1); Has 62125 Blast hits to 27268 proteins in 1602 species: Archae - 369; Bacteria - 7189; Metazoa - 29752; Fungi - 5124; Plants - 2920; Viruses - 566; Other Eukaryotes - 16205 (source: NCBI BLink). & (reliability: 1024.0) &  (original description: no original description)","protein_coding"
"PSME_00001649-RA","No alias","Pseudotsuga menziesii","(at4g04910 : 1014.0) N-ethylmaleimide sensitive factor; N-ethylmaleimide sensitive factor (NSF); FUNCTIONS IN: protein binding; LOCATED IN: vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30539 Blast hits to 27448 proteins in 3106 species: Archae - 1540; Bacteria - 10808; Metazoa - 4854; Fungi - 3637; Plants - 2891; Viruses - 27; Other Eukaryotes - 6782 (source: NCBI BLink). & (p54774|cdc48_soybn : 168.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 2028.0) &  (original description: no original description)","protein_coding"
"PSME_00001693-RA","No alias","Pseudotsuga menziesii","(at5g53350 : 575.0) CLP protease regulatory subunit CLPX mRNA, nuclear gene; CLP protease regulatory subunit X (CLPX); FUNCTIONS IN: unfolded protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), Clp protease, ATP-binding subunit ClpX (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: ATP-dependent Clp protease (TAIR:AT1G33360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1150.0) &  (original description: no original description)","protein_coding"
"PSME_00001739-RA","No alias","Pseudotsuga menziesii","(p35100|clpc_pea : 407.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (at5g50920 : 404.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 808.0) &  (original description: no original description)","protein_coding"
"PSME_00001741-RA","No alias","Pseudotsuga menziesii","(p46523|clpa_brana : 245.0) ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplast precursor (Fragment) - Brassica napus (Rape) & (at5g50920 : 241.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 482.0) &  (original description: no original description)","protein_coding"
"PSME_00001948-RA","No alias","Pseudotsuga menziesii","(o64982|prs7_prupe : 762.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Prunus persica (Peach) & (at1g53750 : 748.0) 26S proteasome AAA-ATPase subunit RPT1a (RPT1a) mRNA,; regulatory particle triple-A 1A (RPT1A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (TAIR:AT1G53780.2); Has 30646 Blast hits to 28391 proteins in 3108 species: Archae - 1452; Bacteria - 10350; Metazoa - 4866; Fungi - 3564; Plants - 3128; Viruses - 30; Other Eukaryotes - 7256 (source: NCBI BLink). & (reliability: 1496.0) &  (original description: no original description)","protein_coding"
"PSME_00002268-RA","No alias","Pseudotsuga menziesii","(at2g03670 : 201.0) CDC48 - like protein  AAA-type ATPaseCell. division control protein 48 homolog B; cell division cycle 48B (CDC48B); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 56751 Blast hits to 29677 proteins in 3123 species: Archae - 2145; Bacteria - 19832; Metazoa - 8766; Fungi - 6476; Plants - 5731; Viruses - 66; Other Eukaryotes - 13735 (source: NCBI BLink). & (p54774|cdc48_soybn : 114.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 402.0) &  (original description: no original description)","protein_coding"
"PSME_00002270-RA","No alias","Pseudotsuga menziesii","(at2g03670 : 198.0) CDC48 - like protein  AAA-type ATPaseCell. division control protein 48 homolog B; cell division cycle 48B (CDC48B); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 56751 Blast hits to 29677 proteins in 3123 species: Archae - 2145; Bacteria - 19832; Metazoa - 8766; Fungi - 6476; Plants - 5731; Viruses - 66; Other Eukaryotes - 13735 (source: NCBI BLink). & (p54774|cdc48_soybn : 144.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 396.0) &  (original description: no original description)","protein_coding"
"PSME_00002271-RA","No alias","Pseudotsuga menziesii","(at2g03670 : 114.0) CDC48 - like protein  AAA-type ATPaseCell. division control protein 48 homolog B; cell division cycle 48B (CDC48B); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 56751 Blast hits to 29677 proteins in 3123 species: Archae - 2145; Bacteria - 19832; Metazoa - 8766; Fungi - 6476; Plants - 5731; Viruses - 66; Other Eukaryotes - 13735 (source: NCBI BLink). & (reliability: 228.0) &  (original description: no original description)","protein_coding"
"PSME_00002432-RA","No alias","Pseudotsuga menziesii","(at3g03060 : 816.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATPase activity, zinc ion binding; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Protein of unknown function DUF3523 (InterPro:IPR021911); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G16930.1); Has 38046 Blast hits to 31515 proteins in 3061 species: Archae - 1414; Bacteria - 11706; Metazoa - 8052; Fungi - 4459; Plants - 2737; Viruses - 110; Other Eukaryotes - 9568 (source: NCBI BLink). & (p46465|prs6a_orysa : 83.2) 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) - Oryza sativa (Rice) & (reliability: 1612.0) &  (original description: no original description)","protein_coding"
"PSME_00002656-RA","No alias","Pseudotsuga menziesii","(p35100|clpc_pea : 835.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (at5g50920 : 833.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1666.0) &  (original description: no original description)","protein_coding"
"PSME_00002658-RA","No alias","Pseudotsuga menziesii","(p35100|clpc_pea : 520.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (at5g50920 : 509.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1018.0) &  (original description: no original description)","protein_coding"
"PSME_00002775-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 573.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 562.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 1124.0) &  (original description: no original description)","protein_coding"
"PSME_00002806-RA","No alias","Pseudotsuga menziesii","(at3g19740 : 352.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G50140.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 101.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 704.0) &  (original description: no original description)","protein_coding"
"PSME_00002812-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 1009.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 1002.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 2018.0) &  (original description: no original description)","protein_coding"
"PSME_00003521-RA","No alias","Pseudotsuga menziesii","(at4g02480 : 269.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G02890.1); Has 36961 Blast hits to 32268 proteins in 3150 species: Archae - 1594; Bacteria - 13825; Metazoa - 4872; Fungi - 3636; Plants - 2887; Viruses - 35; Other Eukaryotes - 10112 (source: NCBI BLink). & (p54774|cdc48_soybn : 85.9) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 492.0) &  (original description: no original description)","protein_coding"
"PSME_00003738-RA","No alias","Pseudotsuga menziesii","(at1g06430 : 965.0) encodes a FtsH protease that is localized to the chloroplast; FTSH protease 8 (FTSH8); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1); Has 41562 Blast hits to 39150 proteins in 3282 species: Archae - 1592; Bacteria - 17123; Metazoa - 4966; Fungi - 3846; Plants - 3320; Viruses - 34; Other Eukaryotes - 10681 (source: NCBI BLink). & (o82150|ftsh_tobac : 471.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco) & (reliability: 1930.0) &  (original description: no original description)","protein_coding"
"PSME_00003916-RA","No alias","Pseudotsuga menziesii","(at5g19990 : 730.0) 26S proteasome AAA-ATPase subunit; regulatory particle triple-A ATPase 6A (RPT6A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G20000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (o64982|prs7_prupe : 340.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Prunus persica (Peach) & (reliability: 1460.0) &  (original description: no original description)","protein_coding"
"PSME_00004473-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 432.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 428.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 864.0) &  (original description: no original description)","protein_coding"
"PSME_00004517-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 853.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 852.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1704.0) &  (original description: no original description)","protein_coding"
"PSME_00004519-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 633.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 633.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1266.0) &  (original description: no original description)","protein_coding"
"PSME_00004548-RA","No alias","Pseudotsuga menziesii","(at2g30950 : 197.0) Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.; VARIEGATED 2 (VAR2); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: photoinhibition, oxygen and reactive oxygen species metabolic process, thylakoid membrane organization, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 42824 Blast hits to 40381 proteins in 3333 species: Archae - 1597; Bacteria - 18199; Metazoa - 4991; Fungi - 3835; Plants - 3350; Viruses - 34; Other Eukaryotes - 10818 (source: NCBI BLink). & (o82150|ftsh_tobac : 128.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco) & (reliability: 394.0) &  (original description: no original description)","protein_coding"
"PSME_00004644-RA","No alias","Pseudotsuga menziesii","(at5g47040 : 297.0) Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790).  Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells.  Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.; lon protease 2 (LON2); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein import into peroxisome matrix, docking, growth, lateral root development; LOCATED IN: organelle lumen, peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Peptidase S16, active site (InterPro:IPR008268), Peptidase S16, ATP-dependent protease La (InterPro:IPR004815), Peptidase S16, lon N-terminal (InterPro:IPR003111), Peptidase S16, Lon C-terminal (InterPro:IPR008269), ATPase, AAA+ type, core (InterPro:IPR003593), Regulator of G protein signalling superfamily (InterPro:IPR016137), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: lon protease 1 (TAIR:AT5G26860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p93647|lonh1_maize : 295.0) Lon protease homolog 1, mitochondrial precursor (EC 3.4.21.-) - Zea mays (Maize) & (reliability: 594.0) &  (original description: no original description)","protein_coding"
"PSME_00004721-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 357.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 307.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 614.0) &  (original description: no original description)","protein_coding"
"PSME_00004919-RA","No alias","Pseudotsuga menziesii","(at2g25140 : 1357.0) Encodes ClpB4, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Targeted to the mitochondrion, also referred to as ClpB-m.  Transcripts of ClpB4 accumulate dramatically at high temperatures, suggesting that it may be involved in response to heat stress.; casein lytic proteinase B4 (CLPB4); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to heat; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpB (InterPro:IPR017730), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B3 (TAIR:AT5G15450.1); Has 30488 Blast hits to 27328 proteins in 3166 species: Archae - 421; Bacteria - 19864; Metazoa - 870; Fungi - 613; Plants - 740; Viruses - 7; Other Eukaryotes - 7973 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 823.0) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 2714.0) &  (original description: no original description)","protein_coding"
"PSME_00004936-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 142.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 142.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 284.0) &  (original description: no original description)","protein_coding"
"PSME_00005341-RA","No alias","Pseudotsuga menziesii","(q6f2y7|hs101_orysa : 1383.0) Heat shock protein 101 - Oryza sativa (Rice) & (at1g74310 : 1342.0) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101.  AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.; heat shock protein 101 (HSP101); FUNCTIONS IN: protein binding, ATPase activity, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 (TAIR:AT4G14670.1); Has 27671 Blast hits to 24472 proteins in 3146 species: Archae - 360; Bacteria - 17866; Metazoa - 1124; Fungi - 430; Plants - 707; Viruses - 13; Other Eukaryotes - 7171 (source: NCBI BLink). & (reliability: 2684.0) &  (original description: no original description)","protein_coding"
"PSME_00005501-RA","No alias","Pseudotsuga menziesii","(at2g30950 : 400.0) Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.; VARIEGATED 2 (VAR2); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: photoinhibition, oxygen and reactive oxygen species metabolic process, thylakoid membrane organization, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 42824 Blast hits to 40381 proteins in 3333 species: Archae - 1597; Bacteria - 18199; Metazoa - 4991; Fungi - 3835; Plants - 3350; Viruses - 34; Other Eukaryotes - 10818 (source: NCBI BLink). & (o82150|ftsh_tobac : 303.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco) & (reliability: 800.0) &  (original description: no original description)","protein_coding"
"PSME_00005563-RA","No alias","Pseudotsuga menziesii","(at2g27600 : 333.0) Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog.  Localized to the cytoplasm and to multivesicular endosomes.  Involved in multivesicular endosome function.; SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1 (SKD1); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: vesicle-mediated transport, endosome organization; LOCATED IN: cytoplasm, multivesicular body; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1); Has 30691 Blast hits to 28172 proteins in 3117 species: Archae - 1476; Bacteria - 10868; Metazoa - 5113; Fungi - 3519; Plants - 2854; Viruses - 27; Other Eukaryotes - 6834 (source: NCBI BLink). & (reliability: 666.0) &  (original description: no original description)","protein_coding"
"PSME_00005800-RA","No alias","Pseudotsuga menziesii","(p93431|rca_orysa : 213.0) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) - Oryza sativa (Rice) & (at2g39730 : 202.0) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.; rubisco activase (RCA); FUNCTIONS IN: enzyme regulator activity, ADP binding, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to cold, response to light stimulus, defense response to bacterium; LOCATED IN: in 10 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73110.1); Has 2322 Blast hits to 2274 proteins in 510 species: Archae - 328; Bacteria - 451; Metazoa - 248; Fungi - 425; Plants - 405; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink). & (reliability: 404.0) &  (original description: no original description)","protein_coding"
"PSME_00005908-RA","No alias","Pseudotsuga menziesii","(at1g03000 : 644.0) Encodes an apparent ATPase similar to yeast and human protein required for peroxisomal biogenesis.  May facilitate recycling of PEX5, the peroxisomal matrix protein receptor, and thereby promote peroxisomal matrix protein import.; peroxin 6 (PEX6); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 36036 Blast hits to 31766 proteins in 3165 species: Archae - 1626; Bacteria - 13920; Metazoa - 5344; Fungi - 4031; Plants - 3389; Viruses - 33; Other Eukaryotes - 7693 (source: NCBI BLink). & (p54774|cdc48_soybn : 275.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1288.0) &  (original description: no original description)","protein_coding"
"PSME_00005994-RA","No alias","Pseudotsuga menziesii","(p93431|rca_orysa : 233.0) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) - Oryza sativa (Rice) & (at2g39730 : 224.0) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.; rubisco activase (RCA); FUNCTIONS IN: enzyme regulator activity, ADP binding, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to cold, response to light stimulus, defense response to bacterium; LOCATED IN: in 10 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73110.1); Has 2322 Blast hits to 2274 proteins in 510 species: Archae - 328; Bacteria - 451; Metazoa - 248; Fungi - 425; Plants - 405; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink). & (reliability: 448.0) &  (original description: no original description)","protein_coding"
"PSME_00006163-RA","No alias","Pseudotsuga menziesii","(at4g02480 : 1157.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G02890.1); Has 36961 Blast hits to 32268 proteins in 3150 species: Archae - 1594; Bacteria - 13825; Metazoa - 4872; Fungi - 3636; Plants - 2887; Viruses - 35; Other Eukaryotes - 10112 (source: NCBI BLink). & (q96372|cdc48_capan : 175.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 2314.0) &  (original description: no original description)","protein_coding"
"PSME_00006192-RA","No alias","Pseudotsuga menziesii","(at3g56690 : 179.0) encodes a protein similar to ATPases and binds to calmodulin in vitro. This is a single-copy gene and is expressed in all tissues examined.; Cam interacting protein 111 (CIP111); FUNCTIONS IN: ATPase activity, calmodulin binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 63578 Blast hits to 32942 proteins in 3240 species: Archae - 2541; Bacteria - 24762; Metazoa - 9322; Fungi - 6853; Plants - 5967; Viruses - 72; Other Eukaryotes - 14061 (source: NCBI BLink). & (q96372|cdc48_capan : 99.8) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 358.0) &  (original description: no original description)","protein_coding"
"PSME_00006210-RA","No alias","Pseudotsuga menziesii","(q96372|cdc48_capan : 638.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (at3g53230 : 603.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 1206.0) &  (original description: no original description)","protein_coding"
"PSME_00006314-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 319.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 315.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 630.0) &  (original description: no original description)","protein_coding"
"PSME_00006623-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 1057.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 1055.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 2114.0) &  (original description: no original description)","protein_coding"
"PSME_00006672-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 714.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 710.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1428.0) &  (original description: no original description)","protein_coding"
"PSME_00006704-RA","No alias","Pseudotsuga menziesii","(at4g29040 : 771.0) 26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA,; regulatory particle AAA-ATPase 2A (RPT2a); FUNCTIONS IN: ATPase activity; INVOLVED IN: in 17 processes; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G20140.1); Has 31112 Blast hits to 28760 proteins in 3112 species: Archae - 1431; Bacteria - 10308; Metazoa - 4877; Fungi - 3744; Plants - 3214; Viruses - 41; Other Eukaryotes - 7497 (source: NCBI BLink). & (p46466|prs4_orysa : 754.0) 26S protease regulatory subunit 4 homolog (TAT-binding protein homolog 2) - Oryza sativa (Rice) & (reliability: 1542.0) &  (original description: no original description)","protein_coding"
"PSME_00006705-RA","No alias","Pseudotsuga menziesii","(at4g29040 : 767.0) 26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA,; regulatory particle AAA-ATPase 2A (RPT2a); FUNCTIONS IN: ATPase activity; INVOLVED IN: in 17 processes; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G20140.1); Has 31112 Blast hits to 28760 proteins in 3112 species: Archae - 1431; Bacteria - 10308; Metazoa - 4877; Fungi - 3744; Plants - 3214; Viruses - 41; Other Eukaryotes - 7497 (source: NCBI BLink). & (p46466|prs4_orysa : 751.0) 26S protease regulatory subunit 4 homolog (TAT-binding protein homolog 2) - Oryza sativa (Rice) & (reliability: 1534.0) &  (original description: no original description)","protein_coding"
"PSME_00006816-RA","No alias","Pseudotsuga menziesii","(at5g08470 : 573.0) an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals.; peroxisome 1 (PEX1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation, response to stress; LOCATED IN: peroxisome; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Aspartate decarboxylase-like fold (InterPro:IPR009010), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peroxisome biogenesis factor 1, N-terminal (InterPro:IPR015342); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT3G53230.1); Has 45022 Blast hits to 26157 proteins in 3042 species: Archae - 1897; Bacteria - 15808; Metazoa - 7500; Fungi - 5597; Plants - 4311; Viruses - 29; Other Eukaryotes - 9880 (source: NCBI BLink). & (p54774|cdc48_soybn : 172.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1146.0) &  (original description: no original description)","protein_coding"
"PSME_00006889-RA","No alias","Pseudotsuga menziesii","(at3g05530 : 267.0) Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle.  Essential for gametophyte development.  In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b.  RPT5a and RPT5b show accession-dependent functional redundancy.  In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.; regulatory particle triple-A ATPase 5A (RPT5A); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: 26S proteasome AAA-ATPase subunit RPT5B (TAIR:AT1G09100.1); Has 33265 Blast hits to 30927 proteins in 3145 species: Archae - 1437; Bacteria - 12044; Metazoa - 4947; Fungi - 3672; Plants - 3322; Viruses - 56; Other Eukaryotes - 7787 (source: NCBI BLink). & (o23894|prs6a_bracm : 267.0) 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) - Brassica campestris (Field mustard) & (reliability: 534.0) &  (original description: no original description)","protein_coding"
"PSME_00006932-RA","No alias","Pseudotsuga menziesii","(at3g01610 : 663.0) AAA-type ATPase - Over 90% homologous to CDC48a; cell division cycle 48C (CDC48C); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 65227 Blast hits to 39412 proteins in 3299 species: Archae - 1912; Bacteria - 27659; Metazoa - 8516; Fungi - 6329; Plants - 5583; Viruses - 58; Other Eukaryotes - 15170 (source: NCBI BLink). & (p54774|cdc48_soybn : 454.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1326.0) &  (original description: no original description)","protein_coding"
"PSME_00007395-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 449.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 441.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 898.0) &  (original description: no original description)","protein_coding"
"PSME_00007603-RA","No alias","Pseudotsuga menziesii","(q8lpb4|pskr_dauca : 191.0) Phytosulfokine receptor precursor (EC 2.7.11.1) (Phytosulfokine LRR receptor kinase) - Daucus carota (Carrot) & (at2g02220 : 190.0) Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ).; phytosulfokin receptor 1 (PSKR1); FUNCTIONS IN: peptide receptor activity, protein serine/threonine kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, response to wounding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: phytosylfokine-alpha receptor 2 (TAIR:AT5G53890.1); Has 188205 Blast hits to 128830 proteins in 4018 species: Archae - 120; Bacteria - 18455; Metazoa - 56562; Fungi - 9680; Plants - 79633; Viruses - 405; Other Eukaryotes - 23350 (source: NCBI BLink). & (reliability: 362.0) &  (original description: no original description)","protein_coding"
"PSME_00007617-RA","No alias","Pseudotsuga menziesii","(at3g52490 : 246.0) Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; INVOLVED IN: protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G57710.1); Has 7668 Blast hits to 7397 proteins in 2358 species: Archae - 25; Bacteria - 6450; Metazoa - 2; Fungi - 186; Plants - 346; Viruses - 0; Other Eukaryotes - 659 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 95.5) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 492.0) &  (original description: no original description)","protein_coding"
"PSME_00007725-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 1417.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 1411.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 2834.0) &  (original description: no original description)","protein_coding"
"PSME_00008104-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 484.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 481.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 968.0) &  (original description: no original description)","protein_coding"
"PSME_00008166-RA","No alias","Pseudotsuga menziesii","(at1g05910 : 838.0) cell division cycle protein 48-related / CDC48-related; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G15120.1); Has 67654 Blast hits to 42823 proteins in 3246 species: Archae - 1526; Bacteria - 25275; Metazoa - 14857; Fungi - 7046; Plants - 4267; Viruses - 557; Other Eukaryotes - 14126 (source: NCBI BLink). & (p54774|cdc48_soybn : 212.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1676.0) &  (original description: no original description)","protein_coding"
"PSME_00008552-RA","No alias","Pseudotsuga menziesii","(p35100|clpc_pea : 368.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (at5g50920 : 353.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 706.0) &  (original description: no original description)","protein_coding"
"PSME_00008881-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 521.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 516.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1042.0) &  (original description: no original description)","protein_coding"
"PSME_00009265-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 592.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 585.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 1184.0) &  (original description: no original description)","protein_coding"
"PSME_00009323-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 301.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 295.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 590.0) &  (original description: no original description)","protein_coding"
"PSME_00009503-RA","No alias","Pseudotsuga menziesii","(at1g06430 : 404.0) encodes a FtsH protease that is localized to the chloroplast; FTSH protease 8 (FTSH8); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1); Has 41562 Blast hits to 39150 proteins in 3282 species: Archae - 1592; Bacteria - 17123; Metazoa - 4966; Fungi - 3846; Plants - 3320; Viruses - 34; Other Eukaryotes - 10681 (source: NCBI BLink). & (q39444|ftsh_capan : 219.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (Fragment) - Capsicum annuum (Bell pepper) & (reliability: 808.0) &  (original description: no original description)","protein_coding"
"PSME_00009600-RA","No alias","Pseudotsuga menziesii","(p93647|lonh1_maize : 540.0) Lon protease homolog 1, mitochondrial precursor (EC 3.4.21.-) - Zea mays (Maize) & (at5g47040 : 534.0) Encodes a member of the Lon protease-like proteins (Lon1/At5g26860, Lon2/At5g47040, Lon3/At3g05780, Lon4/At3g05790).  Lon is a multifunctional ATP-dependent protease which exists in bacteria, archaea and within organelles in eukaryotic cells.  Lon proteases are responsible for the degradation of abnormal, damaged and unstable proteins.; lon protease 2 (LON2); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein import into peroxisome matrix, docking, growth, lateral root development; LOCATED IN: organelle lumen, peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Peptidase S16, active site (InterPro:IPR008268), Peptidase S16, ATP-dependent protease La (InterPro:IPR004815), Peptidase S16, lon N-terminal (InterPro:IPR003111), Peptidase S16, Lon C-terminal (InterPro:IPR008269), ATPase, AAA+ type, core (InterPro:IPR003593), Regulator of G protein signalling superfamily (InterPro:IPR016137), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: lon protease 1 (TAIR:AT5G26860.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1068.0) &  (original description: no original description)","protein_coding"
"PSME_00009607-RA","No alias","Pseudotsuga menziesii","(at2g30950 : 162.0) Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.; VARIEGATED 2 (VAR2); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: photoinhibition, oxygen and reactive oxygen species metabolic process, thylakoid membrane organization, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 42824 Blast hits to 40381 proteins in 3333 species: Archae - 1597; Bacteria - 18199; Metazoa - 4991; Fungi - 3835; Plants - 3350; Viruses - 34; Other Eukaryotes - 10818 (source: NCBI BLink). & (o82150|ftsh_tobac : 103.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco) & (reliability: 324.0) &  (original description: no original description)","protein_coding"
"PSME_00009622-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 399.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 392.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 798.0) &  (original description: no original description)","protein_coding"
"PSME_00009729-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 441.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 438.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 882.0) &  (original description: no original description)","protein_coding"
"PSME_00009792-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 366.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 360.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 732.0) &  (original description: no original description)","protein_coding"
"PSME_00009817-RA","No alias","Pseudotsuga menziesii","(at1g63160 : 516.0) replication factor C 2 (RFC2); FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA replication; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA)  (TAIR:AT1G21690.1); Has 17520 Blast hits to 17472 proteins in 2840 species: Archae - 620; Bacteria - 9832; Metazoa - 859; Fungi - 958; Plants - 372; Viruses - 89; Other Eukaryotes - 4790 (source: NCBI BLink). & (reliability: 1032.0) &  (original description: no original description)","protein_coding"
"PSME_00009902-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 922.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 919.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1844.0) &  (original description: no original description)","protein_coding"
"PSME_00010035-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 616.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 609.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1232.0) &  (original description: no original description)","protein_coding"
"PSME_00010207-RA","No alias","Pseudotsuga menziesii","(p93431|rca_orysa : 674.0) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) - Oryza sativa (Rice) & (at2g39730 : 668.0) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.; rubisco activase (RCA); FUNCTIONS IN: enzyme regulator activity, ADP binding, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to cold, response to light stimulus, defense response to bacterium; LOCATED IN: in 10 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73110.1); Has 2322 Blast hits to 2274 proteins in 510 species: Archae - 328; Bacteria - 451; Metazoa - 248; Fungi - 425; Plants - 405; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink). & (reliability: 1336.0) &  (original description: no original description)","protein_coding"
"PSME_00010463-RA","No alias","Pseudotsuga menziesii","(at1g64110 : 959.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G28000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 171.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1918.0) &  (original description: no original description)","protein_coding"
"PSME_00010721-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 326.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 322.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 652.0) &  (original description: no original description)","protein_coding"
"PSME_00010780-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 484.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 478.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 968.0) &  (original description: no original description)","protein_coding"
"PSME_00011388-RA","No alias","Pseudotsuga menziesii","(at1g06430 : 338.0) encodes a FtsH protease that is localized to the chloroplast; FTSH protease 8 (FTSH8); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1); Has 41562 Blast hits to 39150 proteins in 3282 species: Archae - 1592; Bacteria - 17123; Metazoa - 4966; Fungi - 3846; Plants - 3320; Viruses - 34; Other Eukaryotes - 10681 (source: NCBI BLink). & (o82150|ftsh_tobac : 248.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco) & (reliability: 676.0) &  (original description: no original description)","protein_coding"
"PSME_00011495-RA","No alias","Pseudotsuga menziesii","(at1g33290 : 443.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73170.1); Has 745 Blast hits to 453 proteins in 163 species: Archae - 0; Bacteria - 369; Metazoa - 12; Fungi - 0; Plants - 203; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink). & (reliability: 886.0) &  (original description: no original description)","protein_coding"
"PSME_00011553-RA","No alias","Pseudotsuga menziesii","(q9fxt9|prs7_orysa : 832.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Oryza sativa (Rice) & (at1g53750 : 817.0) 26S proteasome AAA-ATPase subunit RPT1a (RPT1a) mRNA,; regulatory particle triple-A 1A (RPT1A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (TAIR:AT1G53780.2); Has 30646 Blast hits to 28391 proteins in 3108 species: Archae - 1452; Bacteria - 10350; Metazoa - 4866; Fungi - 3564; Plants - 3128; Viruses - 30; Other Eukaryotes - 7256 (source: NCBI BLink). & (reliability: 1634.0) &  (original description: no original description)","protein_coding"
"PSME_00011581-RA","No alias","Pseudotsuga menziesii","(at5g58870 : 460.0) encodes an FtsH protease that is localized to the chloroplast; FTSH protease 9 (ftsh9); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 7 (TAIR:AT3G47060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q5z974|ftsh_orysa : 302.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 920.0) &  (original description: no original description)","protein_coding"
"PSME_00011582-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 345.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 337.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 674.0) &  (original description: no original description)","protein_coding"
"PSME_00011755-RA","No alias","Pseudotsuga menziesii","(at4g30250 : 365.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G57480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 730.0) &  (original description: no original description)","protein_coding"
"PSME_00011756-RA","No alias","Pseudotsuga menziesii","(at4g30250 : 363.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G57480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 726.0) &  (original description: no original description)","protein_coding"
"PSME_00011757-RA","No alias","Pseudotsuga menziesii","(at4g30250 : 355.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G57480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 710.0) &  (original description: no original description)","protein_coding"
"PSME_00011758-RA","No alias","Pseudotsuga menziesii","(q43270|plda1_maize : 208.0) Phospholipase D alpha 1 (EC 3.1.4.4) (PLD alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) - Zea mays (Maize) & (at3g15730 : 189.0) Encodes phospholipase D alpha 1 (PLD alpha 1). Positive regulator of abscisic acid (ABA) mediated stomatal movements.  PLD alpha 1 plays an important role in seed deterioration and aging in Arabidopsis.; phospholipase D alpha 1 (PLDALPHA1); FUNCTIONS IN: phospholipase D activity, phosphatidylinositol-4,5-bisphosphate binding; INVOLVED IN: response to cadmium ion, fatty acid metabolic process, seed germination, regulation of stomatal movement, positive regulation of abscisic acid mediated signaling pathway; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase D (InterPro:IPR015679), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Phospholipase D/Transphosphatidylase (InterPro:IPR001736), C2 calcium-dependent membrane targeting (InterPro:IPR000008), Phospholipase D, plant (InterPro:IPR011402); BEST Arabidopsis thaliana protein match is: phospholipase D alpha 2 (TAIR:AT1G52570.1); Has 2073 Blast hits to 1588 proteins in 412 species: Archae - 0; Bacteria - 593; Metazoa - 344; Fungi - 417; Plants - 575; Viruses - 0; Other Eukaryotes - 144 (source: NCBI BLink). & (reliability: 378.0) &  (original description: no original description)","protein_coding"
"PSME_00011898-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 578.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 572.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1156.0) &  (original description: no original description)","protein_coding"
"PSME_00011903-RA","No alias","Pseudotsuga menziesii","(q6f2y7|hs101_orysa : 255.0) Heat shock protein 101 - Oryza sativa (Rice) & (at1g74310 : 246.0) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101.  AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.; heat shock protein 101 (HSP101); FUNCTIONS IN: protein binding, ATPase activity, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 (TAIR:AT4G14670.1); Has 27671 Blast hits to 24472 proteins in 3146 species: Archae - 360; Bacteria - 17866; Metazoa - 1124; Fungi - 430; Plants - 707; Viruses - 13; Other Eukaryotes - 7171 (source: NCBI BLink). & (reliability: 492.0) &  (original description: no original description)","protein_coding"
"PSME_00012020-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 943.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 936.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1886.0) &  (original description: no original description)","protein_coding"
"PSME_00012196-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 631.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 625.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1262.0) &  (original description: no original description)","protein_coding"
"PSME_00012343-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 420.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 417.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 840.0) &  (original description: no original description)","protein_coding"
"PSME_00012526-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 442.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 439.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 878.0) &  (original description: no original description)","protein_coding"
"PSME_00012550-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 446.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 445.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 892.0) &  (original description: no original description)","protein_coding"
"PSME_00012564-RA","No alias","Pseudotsuga menziesii","(q96372|cdc48_capan : 409.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (at3g53230 : 408.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 816.0) &  (original description: no original description)","protein_coding"
"PSME_00012565-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 1117.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 1108.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 2234.0) &  (original description: no original description)","protein_coding"
"PSME_00012630-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 531.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 524.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 1062.0) &  (original description: no original description)","protein_coding"
"PSME_00012880-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 311.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g09840 : 309.0) Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation.; cell division cycle 48 (CDC48); FUNCTIONS IN: ATPase activity, identical protein binding; INVOLVED IN: response to cadmium ion, pollen germination, pollen tube growth, cell division, phosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66378 Blast hits to 39099 proteins in 3298 species: Archae - 1713; Bacteria - 29252; Metazoa - 8676; Fungi - 6302; Plants - 5800; Viruses - 77; Other Eukaryotes - 14558 (source: NCBI BLink). & (reliability: 618.0) &  (original description: no original description)","protein_coding"
"PSME_00012910-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 561.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 553.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1122.0) &  (original description: no original description)","protein_coding"
"PSME_00012949-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 141.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q96372|cdc48_capan : 138.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 282.0) &  (original description: no original description)","protein_coding"
"PSME_00013069-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 804.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 799.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1608.0) &  (original description: no original description)","protein_coding"
"PSME_00013414-RA","No alias","Pseudotsuga menziesii","(at1g06430 : 399.0) encodes a FtsH protease that is localized to the chloroplast; FTSH protease 8 (FTSH8); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1); Has 41562 Blast hits to 39150 proteins in 3282 species: Archae - 1592; Bacteria - 17123; Metazoa - 4966; Fungi - 3846; Plants - 3320; Viruses - 34; Other Eukaryotes - 10681 (source: NCBI BLink). & (q39444|ftsh_capan : 258.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (Fragment) - Capsicum annuum (Bell pepper) & (reliability: 798.0) &  (original description: no original description)","protein_coding"
"PSME_00013517-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 202.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 201.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 402.0) &  (original description: no original description)","protein_coding"
"PSME_00013547-RA","No alias","Pseudotsuga menziesii","(at1g74310 : 529.0) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101.  AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.; heat shock protein 101 (HSP101); FUNCTIONS IN: protein binding, ATPase activity, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 (TAIR:AT4G14670.1); Has 27671 Blast hits to 24472 proteins in 3146 species: Archae - 360; Bacteria - 17866; Metazoa - 1124; Fungi - 430; Plants - 707; Viruses - 13; Other Eukaryotes - 7171 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 527.0) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 1058.0) &  (original description: no original description)","protein_coding"
"PSME_00013647-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 764.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 760.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1528.0) &  (original description: no original description)","protein_coding"
"PSME_00013822-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 419.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 415.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 830.0) &  (original description: no original description)","protein_coding"
"PSME_00014066-RA","No alias","Pseudotsuga menziesii","(at1g24290 : 299.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; EXPRESSED IN: shoot apex, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), ATPase, AAA-type, core (InterPro:IPR003959), MgsA AAA+ ATPase C-terminal (InterPro:IPR021886), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: replication factor C subunit 3 (TAIR:AT1G77470.1); Has 22422 Blast hits to 22383 proteins in 2992 species: Archae - 614; Bacteria - 15728; Metazoa - 553; Fungi - 700; Plants - 273; Viruses - 62; Other Eukaryotes - 4492 (source: NCBI BLink). & (reliability: 598.0) &  (original description: no original description)","protein_coding"
"PSME_00014106-RA","No alias","Pseudotsuga menziesii","(at5g15450 : 850.0) Encodes a chloroplast-targeted Hsp101 homologue.  Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring thermotolerance to chloroplasts during heat stress.  APG6 is constitutively expressed in the root tips, the organ boundary region, the reproductive tissues of mature plants where plastids exist as proplastids, and slightly in the stems and leaves.  APG6 expression is upregulated in response to heat shock in various organs, but not in response to other abiotic stresses.  Apg6 mutants have a pale-green phenotype.; casein lytic proteinase B3 (CLPB3); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: chloroplast organization, response to heat; LOCATED IN: plastid stroma, chloroplast, chloroplast stroma; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpB (InterPro:IPR017730), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B4 (TAIR:AT2G25140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 581.0) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 1700.0) &  (original description: no original description)","protein_coding"
"PSME_00014279-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 921.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 909.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1842.0) &  (original description: no original description)","protein_coding"
"PSME_00014507-RA","No alias","Pseudotsuga menziesii","(at2g30950 : 828.0) Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.; VARIEGATED 2 (VAR2); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: photoinhibition, oxygen and reactive oxygen species metabolic process, thylakoid membrane organization, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 42824 Blast hits to 40381 proteins in 3333 species: Archae - 1597; Bacteria - 18199; Metazoa - 4991; Fungi - 3835; Plants - 3350; Viruses - 34; Other Eukaryotes - 10818 (source: NCBI BLink). & (q5z974|ftsh_orysa : 447.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 1656.0) &  (original description: no original description)","protein_coding"
"PSME_00014544-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 527.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 523.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1054.0) &  (original description: no original description)","protein_coding"
"PSME_00014656-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 497.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 486.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 994.0) &  (original description: no original description)","protein_coding"
"PSME_00015016-RA","No alias","Pseudotsuga menziesii","(at1g64110 : 820.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G28000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 175.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1640.0) &  (original description: no original description)","protein_coding"
"PSME_00015054-RA","No alias","Pseudotsuga menziesii","(o82150|ftsh_tobac : 914.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco) & (at1g50250 : 910.0) encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes.; FTSH protease 1 (FTSH1); FUNCTIONS IN: metallopeptidase activity, protein binding, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: photosystem II repair, PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid lumen, chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT5G42270.1); Has 39789 Blast hits to 37355 proteins in 3308 species: Archae - 1512; Bacteria - 16133; Metazoa - 4957; Fungi - 3666; Plants - 3305; Viruses - 34; Other Eukaryotes - 10182 (source: NCBI BLink). & (reliability: 1820.0) &  (original description: no original description)","protein_coding"
"PSME_00015145-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 875.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 871.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1750.0) &  (original description: no original description)","protein_coding"
"PSME_00015191-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 213.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 213.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 426.0) &  (original description: no original description)","protein_coding"
"PSME_00015274-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 514.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 509.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 1018.0) &  (original description: no original description)","protein_coding"
"PSME_00015457-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 329.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 322.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 644.0) &  (original description: no original description)","protein_coding"
"PSME_00015534-RA","No alias","Pseudotsuga menziesii","(at5g53540 : 258.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G27680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p54774|cdc48_soybn : 89.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 488.0) &  (original description: no original description)","protein_coding"
"PSME_00015638-RA","No alias","Pseudotsuga menziesii","(at2g27600 : 296.0) Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog.  Localized to the cytoplasm and to multivesicular endosomes.  Involved in multivesicular endosome function.; SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1 (SKD1); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: vesicle-mediated transport, endosome organization; LOCATED IN: cytoplasm, multivesicular body; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1); Has 30691 Blast hits to 28172 proteins in 3117 species: Archae - 1476; Bacteria - 10868; Metazoa - 5113; Fungi - 3519; Plants - 2854; Viruses - 27; Other Eukaryotes - 6834 (source: NCBI BLink). & (reliability: 592.0) &  (original description: no original description)","protein_coding"
"PSME_00015939-RA","No alias","Pseudotsuga menziesii","(at2g29080 : 666.0) encodes an FtsH protease that is localized to the mitochondrion; FTSH protease 3 (ftsh3); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: mitochondrion, chloroplast thylakoid membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 10 (TAIR:AT1G07510.1); Has 42068 Blast hits to 39734 proteins in 3332 species: Archae - 1581; Bacteria - 17420; Metazoa - 4814; Fungi - 3774; Plants - 3280; Viruses - 30; Other Eukaryotes - 11169 (source: NCBI BLink). & (o82150|ftsh_tobac : 315.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco) & (reliability: 1308.0) &  (original description: no original description)","protein_coding"
"PSME_00015953-RA","No alias","Pseudotsuga menziesii","(at2g30950 : 342.0) Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.; VARIEGATED 2 (VAR2); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: photoinhibition, oxygen and reactive oxygen species metabolic process, thylakoid membrane organization, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 42824 Blast hits to 40381 proteins in 3333 species: Archae - 1597; Bacteria - 18199; Metazoa - 4991; Fungi - 3835; Plants - 3350; Viruses - 34; Other Eukaryotes - 10818 (source: NCBI BLink). & (o82150|ftsh_tobac : 272.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco) & (reliability: 684.0) &  (original description: no original description)","protein_coding"
"PSME_00016020-RA","No alias","Pseudotsuga menziesii","(p35100|clpc_pea : 479.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (at3g48870 : 458.0) Encodes a nuclear encoded protein with similarity to Clpa regulatory subunit of CLP protease complex. The protein is localized to the chloroplast stroma.  May function redundantly with TIC complex  in chloroplast protein import.; HSP93-III; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein import into chloroplast stroma, chloroplast organization; LOCATED IN: mitochondrion, chloroplast, chloroplast stroma, Tic complex; EXPRESSED IN: guard cell; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1). & (reliability: 916.0) &  (original description: no original description)","protein_coding"
"PSME_00016260-RA","No alias","Pseudotsuga menziesii","(q6f2y7|hs101_orysa : 780.0) Heat shock protein 101 - Oryza sativa (Rice) & (at1g74310 : 767.0) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101.  AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.; heat shock protein 101 (HSP101); FUNCTIONS IN: protein binding, ATPase activity, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 (TAIR:AT4G14670.1); Has 27671 Blast hits to 24472 proteins in 3146 species: Archae - 360; Bacteria - 17866; Metazoa - 1124; Fungi - 430; Plants - 707; Viruses - 13; Other Eukaryotes - 7171 (source: NCBI BLink). & (reliability: 1534.0) &  (original description: no original description)","protein_coding"
"PSME_00016311-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 262.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 257.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 514.0) &  (original description: no original description)","protein_coding"
"PSME_00016380-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 1182.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 1176.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 2352.0) &  (original description: no original description)","protein_coding"
"PSME_00016475-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00016622-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 1148.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 1142.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 2296.0) &  (original description: no original description)","protein_coding"
"PSME_00016927-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00017163-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 551.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 549.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1102.0) &  (original description: no original description)","protein_coding"
"PSME_00017343-RA","No alias","Pseudotsuga menziesii","(at1g74310 : 736.0) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101.  AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.; heat shock protein 101 (HSP101); FUNCTIONS IN: protein binding, ATPase activity, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 (TAIR:AT4G14670.1); Has 27671 Blast hits to 24472 proteins in 3146 species: Archae - 360; Bacteria - 17866; Metazoa - 1124; Fungi - 430; Plants - 707; Viruses - 13; Other Eukaryotes - 7171 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 729.0) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 1472.0) &  (original description: no original description)","protein_coding"
"PSME_00017452-RA","No alias","Pseudotsuga menziesii","(p35100|clpc_pea : 698.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (at5g50920 : 679.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1358.0) &  (original description: no original description)","protein_coding"
"PSME_00017728-RA","No alias","Pseudotsuga menziesii","(at2g30950 : 249.0) Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.; VARIEGATED 2 (VAR2); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: photoinhibition, oxygen and reactive oxygen species metabolic process, thylakoid membrane organization, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 42824 Blast hits to 40381 proteins in 3333 species: Archae - 1597; Bacteria - 18199; Metazoa - 4991; Fungi - 3835; Plants - 3350; Viruses - 34; Other Eukaryotes - 10818 (source: NCBI BLink). & (q5z974|ftsh_orysa : 175.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 498.0) &  (original description: no original description)","protein_coding"
"PSME_00017782-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 565.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 560.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1130.0) &  (original description: no original description)","protein_coding"
"PSME_00017883-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 301.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g09840 : 298.0) Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation.; cell division cycle 48 (CDC48); FUNCTIONS IN: ATPase activity, identical protein binding; INVOLVED IN: response to cadmium ion, pollen germination, pollen tube growth, cell division, phosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66378 Blast hits to 39099 proteins in 3298 species: Archae - 1713; Bacteria - 29252; Metazoa - 8676; Fungi - 6302; Plants - 5800; Viruses - 77; Other Eukaryotes - 14558 (source: NCBI BLink). & (reliability: 596.0) &  (original description: no original description)","protein_coding"
"PSME_00017959-RA","No alias","Pseudotsuga menziesii","(at1g06430 : 481.0) encodes a FtsH protease that is localized to the chloroplast; FTSH protease 8 (FTSH8); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1); Has 41562 Blast hits to 39150 proteins in 3282 species: Archae - 1592; Bacteria - 17123; Metazoa - 4966; Fungi - 3846; Plants - 3320; Viruses - 34; Other Eukaryotes - 10681 (source: NCBI BLink). & (o82150|ftsh_tobac : 313.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco) & (reliability: 962.0) &  (original description: no original description)","protein_coding"
"PSME_00018150-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 183.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q96372|cdc48_capan : 180.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 366.0) &  (original description: no original description)","protein_coding"
"PSME_00018217-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 589.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 586.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1178.0) &  (original description: no original description)","protein_coding"
"PSME_00018280-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 147.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 142.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 284.0) &  (original description: no original description)","protein_coding"
"PSME_00018350-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 1217.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 1208.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 2434.0) &  (original description: no original description)","protein_coding"
"PSME_00018502-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 587.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 582.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1174.0) &  (original description: no original description)","protein_coding"
"PSME_00018599-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 512.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 512.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1024.0) &  (original description: no original description)","protein_coding"
"PSME_00018786-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 305.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 300.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 610.0) &  (original description: no original description)","protein_coding"
"PSME_00018995-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 308.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 304.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 608.0) &  (original description: no original description)","protein_coding"
"PSME_00019074-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 1061.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 1053.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 2122.0) &  (original description: no original description)","protein_coding"
"PSME_00019476-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 625.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 620.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1250.0) &  (original description: no original description)","protein_coding"
"PSME_00019625-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 316.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 303.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 632.0) &  (original description: no original description)","protein_coding"
"PSME_00019769-RA","No alias","Pseudotsuga menziesii","(at3g05530 : 728.0) Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle.  Essential for gametophyte development.  In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b.  RPT5a and RPT5b show accession-dependent functional redundancy.  In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.; regulatory particle triple-A ATPase 5A (RPT5A); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: 26S proteasome AAA-ATPase subunit RPT5B (TAIR:AT1G09100.1); Has 33265 Blast hits to 30927 proteins in 3145 species: Archae - 1437; Bacteria - 12044; Metazoa - 4947; Fungi - 3672; Plants - 3322; Viruses - 56; Other Eukaryotes - 7787 (source: NCBI BLink). & (o23894|prs6a_bracm : 727.0) 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) - Brassica campestris (Field mustard) & (reliability: 1456.0) &  (original description: no original description)","protein_coding"
"PSME_00019791-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 802.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 793.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1604.0) &  (original description: no original description)","protein_coding"
"PSME_00020250-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 451.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 439.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 902.0) &  (original description: no original description)","protein_coding"
"PSME_00020536-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 700.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 696.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1400.0) &  (original description: no original description)","protein_coding"
"PSME_00020578-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 1031.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 1019.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 2038.0) &  (original description: no original description)","protein_coding"
"PSME_00020637-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 1093.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 1087.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 2174.0) &  (original description: no original description)","protein_coding"
"PSME_00020673-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 432.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 422.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 864.0) &  (original description: no original description)","protein_coding"
"PSME_00020693-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 952.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 946.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1904.0) &  (original description: no original description)","protein_coding"
"PSME_00020709-RA","No alias","Pseudotsuga menziesii","(at4g02480 : 374.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), SMAD/FHA domain (InterPro:IPR008984), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G02890.1); Has 36961 Blast hits to 32268 proteins in 3150 species: Archae - 1594; Bacteria - 13825; Metazoa - 4872; Fungi - 3636; Plants - 2887; Viruses - 35; Other Eukaryotes - 10112 (source: NCBI BLink). & (q96372|cdc48_capan : 155.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 748.0) &  (original description: no original description)","protein_coding"
"PSME_00020718-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 1155.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 1153.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 2310.0) &  (original description: no original description)","protein_coding"
"PSME_00020765-RA","No alias","Pseudotsuga menziesii","(at3g09840 : 198.0) Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation.; cell division cycle 48 (CDC48); FUNCTIONS IN: ATPase activity, identical protein binding; INVOLVED IN: response to cadmium ion, pollen germination, pollen tube growth, cell division, phosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66378 Blast hits to 39099 proteins in 3298 species: Archae - 1713; Bacteria - 29252; Metazoa - 8676; Fungi - 6302; Plants - 5800; Viruses - 77; Other Eukaryotes - 14558 (source: NCBI BLink). & (q96372|cdc48_capan : 191.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 396.0) &  (original description: no original description)","protein_coding"
"PSME_00020921-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 533.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 530.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 1066.0) &  (original description: no original description)","protein_coding"
"PSME_00021055-RA","No alias","Pseudotsuga menziesii","(at5g50920 : 279.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p35100|clpc_pea : 277.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (reliability: 558.0) &  (original description: no original description)","protein_coding"
"PSME_00021231-RA","No alias","Pseudotsuga menziesii"," no hits & (original description: no original description)","protein_coding"
"PSME_00021232-RA","No alias","Pseudotsuga menziesii","(at1g74310 : 476.0) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101.  AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.; heat shock protein 101 (HSP101); FUNCTIONS IN: protein binding, ATPase activity, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 (TAIR:AT4G14670.1); Has 27671 Blast hits to 24472 proteins in 3146 species: Archae - 360; Bacteria - 17866; Metazoa - 1124; Fungi - 430; Plants - 707; Viruses - 13; Other Eukaryotes - 7171 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 444.0) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 952.0) &  (original description: no original description)","protein_coding"
"PSME_00021241-RA","No alias","Pseudotsuga menziesii","(q40281|rca_maldo : 397.0) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) - Malus domestica (Apple) (Malus sylvestris) & (at2g39730 : 384.0) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.; rubisco activase (RCA); FUNCTIONS IN: enzyme regulator activity, ADP binding, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to cold, response to light stimulus, defense response to bacterium; LOCATED IN: in 10 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73110.1); Has 2322 Blast hits to 2274 proteins in 510 species: Archae - 328; Bacteria - 451; Metazoa - 248; Fungi - 425; Plants - 405; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink). & (reliability: 768.0) &  (original description: no original description)","protein_coding"
"PSME_00021877-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 627.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 595.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1254.0) &  (original description: no original description)","protein_coding"
"PSME_00021909-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 319.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 314.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 628.0) &  (original description: no original description)","protein_coding"
"PSME_00021944-RA","No alias","Pseudotsuga menziesii","(at1g33360 : 290.0) Encodes ClpX3, a subunit of the Clp protease complex.; ATP-dependent Clp protease; FUNCTIONS IN: unfolded protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), Clp protease, ATP-binding subunit ClpX (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: CLP protease regulatory subunit X (TAIR:AT5G53350.1); Has 27211 Blast hits to 23373 proteins in 3012 species: Archae - 715; Bacteria - 14972; Metazoa - 1896; Fungi - 1201; Plants - 919; Viruses - 6; Other Eukaryotes - 7502 (source: NCBI BLink). & (reliability: 580.0) &  (original description: no original description)","protein_coding"
"PSME_00022023-RA","No alias","Pseudotsuga menziesii","(at1g06430 : 316.0) encodes a FtsH protease that is localized to the chloroplast; FTSH protease 8 (FTSH8); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1); Has 41562 Blast hits to 39150 proteins in 3282 species: Archae - 1592; Bacteria - 17123; Metazoa - 4966; Fungi - 3846; Plants - 3320; Viruses - 34; Other Eukaryotes - 10681 (source: NCBI BLink). & (q39444|ftsh_capan : 205.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (Fragment) - Capsicum annuum (Bell pepper) & (reliability: 632.0) &  (original description: no original description)","protein_coding"
"PSME_00022604-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 519.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 513.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1038.0) &  (original description: no original description)","protein_coding"
"PSME_00022626-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 929.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 921.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1858.0) &  (original description: no original description)","protein_coding"
"PSME_00022650-RA","No alias","Pseudotsuga menziesii","(at5g58290 : 703.0) 26S proteasome AAA-ATPase subunit RPT3 (RPT3) mRNA,; regulatory particle triple-A ATPase 3 (RPT3); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, cell wall, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle AAA-ATPase 2A (TAIR:AT4G29040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p54778|prs6b_soltu : 694.0) 26S protease regulatory subunit 6B homolog - Solanum tuberosum (Potato) & (reliability: 1406.0) &  (original description: no original description)","protein_coding"
"PSME_00022656-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 294.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 286.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 588.0) &  (original description: no original description)","protein_coding"
"PSME_00022690-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 531.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 526.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1062.0) &  (original description: no original description)","protein_coding"
"PSME_00022753-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 495.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 487.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 990.0) &  (original description: no original description)","protein_coding"
"PSME_00022778-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 84.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 84.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 168.0) &  (original description: no original description)","protein_coding"
"PSME_00022828-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 652.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 649.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1304.0) &  (original description: no original description)","protein_coding"
"PSME_00023082-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 618.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 610.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1236.0) &  (original description: no original description)","protein_coding"
"PSME_00023083-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 413.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 409.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 826.0) &  (original description: no original description)","protein_coding"
"PSME_00023257-RA","No alias","Pseudotsuga menziesii","(at2g27600 : 349.0) Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog.  Localized to the cytoplasm and to multivesicular endosomes.  Involved in multivesicular endosome function.; SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1 (SKD1); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: vesicle-mediated transport, endosome organization; LOCATED IN: cytoplasm, multivesicular body; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415), MIT (InterPro:IPR007330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1); Has 30691 Blast hits to 28172 proteins in 3117 species: Archae - 1476; Bacteria - 10868; Metazoa - 5113; Fungi - 3519; Plants - 2854; Viruses - 27; Other Eukaryotes - 6834 (source: NCBI BLink). & (q96372|cdc48_capan : 86.7) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 698.0) &  (original description: no original description)","protein_coding"
"PSME_00023259-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 263.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g09840 : 259.0) Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation.; cell division cycle 48 (CDC48); FUNCTIONS IN: ATPase activity, identical protein binding; INVOLVED IN: response to cadmium ion, pollen germination, pollen tube growth, cell division, phosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66378 Blast hits to 39099 proteins in 3298 species: Archae - 1713; Bacteria - 29252; Metazoa - 8676; Fungi - 6302; Plants - 5800; Viruses - 77; Other Eukaryotes - 14558 (source: NCBI BLink). & (reliability: 518.0) &  (original description: no original description)","protein_coding"
"PSME_00023303-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 1026.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 1016.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 2052.0) &  (original description: no original description)","protein_coding"
"PSME_00023569-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 218.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 213.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 436.0) &  (original description: no original description)","protein_coding"
"PSME_00023692-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 397.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 390.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 780.0) &  (original description: no original description)","protein_coding"
"PSME_00023868-RA","No alias","Pseudotsuga menziesii","(at3g03060 : 312.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATPase activity, zinc ion binding; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Protein of unknown function DUF3523 (InterPro:IPR021911); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G16930.1); Has 38046 Blast hits to 31515 proteins in 3061 species: Archae - 1414; Bacteria - 11706; Metazoa - 8052; Fungi - 4459; Plants - 2737; Viruses - 110; Other Eukaryotes - 9568 (source: NCBI BLink). & (reliability: 618.0) &  (original description: no original description)","protein_coding"
"PSME_00023888-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 350.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 345.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 700.0) &  (original description: no original description)","protein_coding"
"PSME_00023897-RA","No alias","Pseudotsuga menziesii","(at5g50920 : 343.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p46523|clpa_brana : 337.0) ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplast precursor (Fragment) - Brassica napus (Rape) & (reliability: 686.0) &  (original description: no original description)","protein_coding"
"PSME_00023967-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 177.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 175.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 354.0) &  (original description: no original description)","protein_coding"
"PSME_00023968-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 182.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 182.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 364.0) &  (original description: no original description)","protein_coding"
"PSME_00024159-RA","No alias","Pseudotsuga menziesii","(at1g06430 : 277.0) encodes a FtsH protease that is localized to the chloroplast; FTSH protease 8 (FTSH8); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1); Has 41562 Blast hits to 39150 proteins in 3282 species: Archae - 1592; Bacteria - 17123; Metazoa - 4966; Fungi - 3846; Plants - 3320; Viruses - 34; Other Eukaryotes - 10681 (source: NCBI BLink). & (q39444|ftsh_capan : 145.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (Fragment) - Capsicum annuum (Bell pepper) & (reliability: 554.0) &  (original description: no original description)","protein_coding"
"PSME_00024251-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 943.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 941.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1882.0) &  (original description: no original description)","protein_coding"
"PSME_00024461-RA","No alias","Pseudotsuga menziesii","(at1g06430 : 204.0) encodes a FtsH protease that is localized to the chloroplast; FTSH protease 8 (FTSH8); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1); Has 41562 Blast hits to 39150 proteins in 3282 species: Archae - 1592; Bacteria - 17123; Metazoa - 4966; Fungi - 3846; Plants - 3320; Viruses - 34; Other Eukaryotes - 10681 (source: NCBI BLink). & (q39444|ftsh_capan : 103.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (Fragment) - Capsicum annuum (Bell pepper) & (reliability: 408.0) &  (original description: no original description)","protein_coding"
"PSME_00024641-RA","No alias","Pseudotsuga menziesii","(at4g12620 : 546.0) Origin Recognition Complex subunit 1b. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with ORC2 and ORC5. Highly expressed in proliferating cells. Expression levels are independent of light regime.; origin of replication complex 1B (ORC1B); CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Origin recognition complex, subunit 1 (InterPro:IPR020793), ATPase, AAA+ type, core (InterPro:IPR003593), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: origin recognition complex 1 (TAIR:AT4G14700.1); Has 5914 Blast hits to 5512 proteins in 383 species: Archae - 477; Bacteria - 4; Metazoa - 3209; Fungi - 806; Plants - 927; Viruses - 0; Other Eukaryotes - 491 (source: NCBI BLink). & (reliability: 1092.0) &  (original description: no original description)","protein_coding"
"PSME_00024686-RA","No alias","Pseudotsuga menziesii","(at1g80350 : 749.0) encodes a p60 katanin protein that is expressed throughout  the plant.  Required for the specification of cell fates from early in development (in the meristem)  through differentiation and for normal postmitotic organization of cortical microtubules into transverse arrays in root epidermis cells. Mutants display cytoskeletal defects.; ECTOPIC ROOT HAIR 3 (ERH3); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: trichome branching, cortical microtubule organization, multidimensional cell growth, plant-type cell wall biogenesis, microtubule cytoskeleton organization; LOCATED IN: katanin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G34560.1); Has 31677 Blast hits to 29370 proteins in 3124 species: Archae - 1478; Bacteria - 12054; Metazoa - 4742; Fungi - 3292; Plants - 2928; Viruses - 23; Other Eukaryotes - 7160 (source: NCBI BLink). & (q96372|cdc48_capan : 202.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 1498.0) &  (original description: no original description)","protein_coding"
"PSME_00024774-RA","No alias","Pseudotsuga menziesii","(at4g27680 : 142.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G53540.1); Has 30260 Blast hits to 27737 proteins in 3108 species: Archae - 1486; Bacteria - 10702; Metazoa - 4856; Fungi - 3534; Plants - 2690; Viruses - 34; Other Eukaryotes - 6958 (source: NCBI BLink). & (reliability: 284.0) &  (original description: no original description)","protein_coding"
"PSME_00024822-RA","No alias","Pseudotsuga menziesii","(at5g61700 : 344.0) member of ATH subfamily; ABC2 homolog 16 (ATH16); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 14 (TAIR:AT5G61740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 688.0) &  (original description: no original description)","protein_coding"
"PSME_00025226-RA","No alias","Pseudotsuga menziesii","(at3g09840 : 516.0) Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation.; cell division cycle 48 (CDC48); FUNCTIONS IN: ATPase activity, identical protein binding; INVOLVED IN: response to cadmium ion, pollen germination, pollen tube growth, cell division, phosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66378 Blast hits to 39099 proteins in 3298 species: Archae - 1713; Bacteria - 29252; Metazoa - 8676; Fungi - 6302; Plants - 5800; Viruses - 77; Other Eukaryotes - 14558 (source: NCBI BLink). & (q96372|cdc48_capan : 508.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 1032.0) &  (original description: no original description)","protein_coding"
"PSME_00025512-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 506.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 503.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1012.0) &  (original description: no original description)","protein_coding"
"PSME_00025616-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 460.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 447.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 920.0) &  (original description: no original description)","protein_coding"
"PSME_00025753-RA","No alias","Pseudotsuga menziesii","(at5g40010 : 189.0) AAA-ATPase 1 (AATP1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28580.1); Has 35875 Blast hits to 26437 proteins in 2942 species: Archae - 1242; Bacteria - 8120; Metazoa - 8429; Fungi - 4077; Plants - 2736; Viruses - 205; Other Eukaryotes - 11066 (source: NCBI BLink). & (reliability: 378.0) &  (original description: no original description)","protein_coding"
"PSME_00026836-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 230.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 229.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 460.0) &  (original description: no original description)","protein_coding"
"PSME_00027112-RA","No alias","Pseudotsuga menziesii","(p93431|rca_orysa : 220.0) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) - Oryza sativa (Rice) & (at2g39730 : 210.0) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.; rubisco activase (RCA); FUNCTIONS IN: enzyme regulator activity, ADP binding, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to cold, response to light stimulus, defense response to bacterium; LOCATED IN: in 10 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73110.1); Has 2322 Blast hits to 2274 proteins in 510 species: Archae - 328; Bacteria - 451; Metazoa - 248; Fungi - 425; Plants - 405; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink). & (reliability: 420.0) &  (original description: no original description)","protein_coding"
"PSME_00027195-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 508.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 503.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1016.0) &  (original description: no original description)","protein_coding"
"PSME_00027202-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 496.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 489.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 978.0) &  (original description: no original description)","protein_coding"
"PSME_00027300-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 495.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 491.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 982.0) &  (original description: no original description)","protein_coding"
"PSME_00027307-RA","No alias","Pseudotsuga menziesii","(at2g30950 : 300.0) Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.; VARIEGATED 2 (VAR2); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: photoinhibition, oxygen and reactive oxygen species metabolic process, thylakoid membrane organization, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 42824 Blast hits to 40381 proteins in 3333 species: Archae - 1597; Bacteria - 18199; Metazoa - 4991; Fungi - 3835; Plants - 3350; Viruses - 34; Other Eukaryotes - 10818 (source: NCBI BLink). & (q39444|ftsh_capan : 165.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (Fragment) - Capsicum annuum (Bell pepper) & (reliability: 600.0) &  (original description: no original description)","protein_coding"
"PSME_00027329-RA","No alias","Pseudotsuga menziesii","(q6f2y7|hs101_orysa : 226.0) Heat shock protein 101 - Oryza sativa (Rice) & (at1g74310 : 214.0) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101.  AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.; heat shock protein 101 (HSP101); FUNCTIONS IN: protein binding, ATPase activity, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 (TAIR:AT4G14670.1); Has 27671 Blast hits to 24472 proteins in 3146 species: Archae - 360; Bacteria - 17866; Metazoa - 1124; Fungi - 430; Plants - 707; Viruses - 13; Other Eukaryotes - 7171 (source: NCBI BLink). & (reliability: 428.0) &  (original description: no original description)","protein_coding"
"PSME_00027517-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 1223.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 1208.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 2446.0) &  (original description: no original description)","protein_coding"
"PSME_00027616-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 266.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 259.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 518.0) &  (original description: no original description)","protein_coding"
"PSME_00027619-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 1177.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q96372|cdc48_capan : 1167.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 2354.0) &  (original description: no original description)","protein_coding"
"PSME_00027633-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 703.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 696.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1406.0) &  (original description: no original description)","protein_coding"
"PSME_00027658-RA","No alias","Pseudotsuga menziesii","(at1g45000 : 496.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: proteasome complex, plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A ATPase 4A (TAIR:AT5G43010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q41365|prs7_spiol : 211.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Spinacia oleracea (Spinach) & (reliability: 992.0) &  (original description: no original description)","protein_coding"
"PSME_00027755-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 572.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 571.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1144.0) &  (original description: no original description)","protein_coding"
"PSME_00027827-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 254.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 252.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 504.0) &  (original description: no original description)","protein_coding"
"PSME_00027938-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 364.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 359.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 728.0) &  (original description: no original description)","protein_coding"
"PSME_00028331-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 696.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 693.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1392.0) &  (original description: no original description)","protein_coding"
"PSME_00028346-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 142.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 142.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 284.0) &  (original description: no original description)","protein_coding"
"PSME_00028504-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 705.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 697.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1410.0) &  (original description: no original description)","protein_coding"
"PSME_00028515-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 699.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 688.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1398.0) &  (original description: no original description)","protein_coding"
"PSME_00028568-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 880.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 876.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1752.0) &  (original description: no original description)","protein_coding"
"PSME_00028677-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 585.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 577.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1170.0) &  (original description: no original description)","protein_coding"
"PSME_00029040-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 278.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 275.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 550.0) &  (original description: no original description)","protein_coding"
"PSME_00029215-RA","No alias","Pseudotsuga menziesii","(at3g02450 : 321.0) cell division protein ftsH, putative; FUNCTIONS IN: in 6 functions; LOCATED IN: integral to membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 43920 Blast hits to 41347 proteins in 3350 species: Archae - 1585; Bacteria - 19560; Metazoa - 4991; Fungi - 3838; Plants - 3354; Viruses - 31; Other Eukaryotes - 10561 (source: NCBI BLink). & (q5z974|ftsh_orysa : 228.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 642.0) &  (original description: no original description)","protein_coding"
"PSME_00029232-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 310.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 302.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 620.0) &  (original description: no original description)","protein_coding"
"PSME_00029679-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 137.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q96372|cdc48_capan : 132.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 274.0) &  (original description: no original description)","protein_coding"
"PSME_00029713-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 455.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 451.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 902.0) &  (original description: no original description)","protein_coding"
"PSME_00029894-RA","No alias","Pseudotsuga menziesii","(at5g57480 : 373.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G25835.1); Has 17733 Blast hits to 16589 proteins in 2814 species: Archae - 1008; Bacteria - 6904; Metazoa - 2230; Fungi - 2111; Plants - 1942; Viruses - 24; Other Eukaryotes - 3514 (source: NCBI BLink). & (reliability: 746.0) &  (original description: no original description)","protein_coding"
"PSME_00029966-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 212.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 206.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 424.0) &  (original description: no original description)","protein_coding"
"PSME_00030383-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 409.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 402.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 818.0) &  (original description: no original description)","protein_coding"
"PSME_00030468-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 297.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 293.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 594.0) &  (original description: no original description)","protein_coding"
"PSME_00030571-RA","No alias","Pseudotsuga menziesii","(q6f2y7|hs101_orysa : 608.0) Heat shock protein 101 - Oryza sativa (Rice) & (at1g74310 : 607.0) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101.  AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.; heat shock protein 101 (HSP101); FUNCTIONS IN: protein binding, ATPase activity, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 (TAIR:AT4G14670.1); Has 27671 Blast hits to 24472 proteins in 3146 species: Archae - 360; Bacteria - 17866; Metazoa - 1124; Fungi - 430; Plants - 707; Viruses - 13; Other Eukaryotes - 7171 (source: NCBI BLink). & (reliability: 1214.0) &  (original description: no original description)","protein_coding"
"PSME_00030621-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 384.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 378.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 768.0) &  (original description: no original description)","protein_coding"
"PSME_00030820-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 556.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 545.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 1112.0) &  (original description: no original description)","protein_coding"
"PSME_00030839-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 696.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 691.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 1392.0) &  (original description: no original description)","protein_coding"
"PSME_00030906-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 876.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 868.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 1752.0) &  (original description: no original description)","protein_coding"
"PSME_00030913-RA","No alias","Pseudotsuga menziesii","(at3g09840 : 728.0) Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation.; cell division cycle 48 (CDC48); FUNCTIONS IN: ATPase activity, identical protein binding; INVOLVED IN: response to cadmium ion, pollen germination, pollen tube growth, cell division, phosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66378 Blast hits to 39099 proteins in 3298 species: Archae - 1713; Bacteria - 29252; Metazoa - 8676; Fungi - 6302; Plants - 5800; Viruses - 77; Other Eukaryotes - 14558 (source: NCBI BLink). & (q96372|cdc48_capan : 722.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 1456.0) &  (original description: no original description)","protein_coding"
"PSME_00030940-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 632.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 626.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1264.0) &  (original description: no original description)","protein_coding"
"PSME_00031072-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 326.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 318.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 652.0) &  (original description: no original description)","protein_coding"
"PSME_00031080-RA","No alias","Pseudotsuga menziesii","(at5g51070 : 879.0) ATP-dependent Clp protease regulatory subunit; EARLY RESPONSIVE TO DEHYDRATION 1 (ERD1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to water deprivation; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: CLPC homologue 1 (TAIR:AT5G50920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p35100|clpc_pea : 663.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (reliability: 1758.0) &  (original description: no original description)","protein_coding"
"PSME_00031098-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 699.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 689.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1398.0) &  (original description: no original description)","protein_coding"
"PSME_00031384-RA","No alias","Pseudotsuga menziesii","(p93431|rca_orysa : 309.0) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) - Oryza sativa (Rice) & (at2g39730 : 297.0) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.; rubisco activase (RCA); FUNCTIONS IN: enzyme regulator activity, ADP binding, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to cold, response to light stimulus, defense response to bacterium; LOCATED IN: in 10 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73110.1); Has 2322 Blast hits to 2274 proteins in 510 species: Archae - 328; Bacteria - 451; Metazoa - 248; Fungi - 425; Plants - 405; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink). & (reliability: 594.0) &  (original description: no original description)","protein_coding"
"PSME_00031502-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 445.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 441.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 890.0) &  (original description: no original description)","protein_coding"
"PSME_00031914-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 769.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 766.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1538.0) &  (original description: no original description)","protein_coding"
"PSME_00032116-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 407.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 405.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 810.0) &  (original description: no original description)","protein_coding"
"PSME_00032313-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 1028.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 1027.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 2056.0) &  (original description: no original description)","protein_coding"
"PSME_00032315-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 717.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 713.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 1434.0) &  (original description: no original description)","protein_coding"
"PSME_00032466-RA","No alias","Pseudotsuga menziesii","(q96372|cdc48_capan : 1097.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (at3g53230 : 1060.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 2120.0) &  (original description: no original description)","protein_coding"
"PSME_00032494-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 330.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 322.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 660.0) &  (original description: no original description)","protein_coding"
"PSME_00032702-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 151.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 149.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 298.0) &  (original description: no original description)","protein_coding"
"PSME_00032812-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 380.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 369.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 760.0) &  (original description: no original description)","protein_coding"
"PSME_00032823-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 265.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q96372|cdc48_capan : 262.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 530.0) &  (original description: no original description)","protein_coding"
"PSME_00033291-RA","No alias","Pseudotsuga menziesii","(at2g30950 : 305.0) Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.; VARIEGATED 2 (VAR2); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: photoinhibition, oxygen and reactive oxygen species metabolic process, thylakoid membrane organization, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 42824 Blast hits to 40381 proteins in 3333 species: Archae - 1597; Bacteria - 18199; Metazoa - 4991; Fungi - 3835; Plants - 3350; Viruses - 34; Other Eukaryotes - 10818 (source: NCBI BLink). & (o82150|ftsh_tobac : 205.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco) & (reliability: 610.0) &  (original description: no original description)","protein_coding"
"PSME_00033365-RA","No alias","Pseudotsuga menziesii","(at3g09840 : 142.0) Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation.; cell division cycle 48 (CDC48); FUNCTIONS IN: ATPase activity, identical protein binding; INVOLVED IN: response to cadmium ion, pollen germination, pollen tube growth, cell division, phosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66378 Blast hits to 39099 proteins in 3298 species: Archae - 1713; Bacteria - 29252; Metazoa - 8676; Fungi - 6302; Plants - 5800; Viruses - 77; Other Eukaryotes - 14558 (source: NCBI BLink). & (p54774|cdc48_soybn : 140.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 284.0) &  (original description: no original description)","protein_coding"
"PSME_00033493-RA","No alias","Pseudotsuga menziesii","(at5g53170 : 451.0) encodes an FtsH protease that is localized to the chloroplast and the mitochondrion; FTSH protease 11 (FTSH11); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: response to heat, PSII associated light-harvesting complex II catabolic process; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 4 (TAIR:AT2G26140.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q5z974|ftsh_orysa : 233.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 902.0) &  (original description: no original description)","protein_coding"
"PSME_00033582-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 263.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 259.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 518.0) &  (original description: no original description)","protein_coding"
"PSME_00033694-RA","No alias","Pseudotsuga menziesii","(q6f2y7|hs101_orysa : 500.0) Heat shock protein 101 - Oryza sativa (Rice) & (at1g74310 : 499.0) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family.  Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101.  AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.; heat shock protein 101 (HSP101); FUNCTIONS IN: protein binding, ATPase activity, ATP binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, protein unfolding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B2 (TAIR:AT4G14670.1); Has 27671 Blast hits to 24472 proteins in 3146 species: Archae - 360; Bacteria - 17866; Metazoa - 1124; Fungi - 430; Plants - 707; Viruses - 13; Other Eukaryotes - 7171 (source: NCBI BLink). & (reliability: 998.0) &  (original description: no original description)","protein_coding"
"PSME_00033726-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 638.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 634.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1276.0) &  (original description: no original description)","protein_coding"
"PSME_00033862-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 893.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 890.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1786.0) &  (original description: no original description)","protein_coding"
"PSME_00034031-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 410.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 402.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 820.0) &  (original description: no original description)","protein_coding"
"PSME_00034134-RA","No alias","Pseudotsuga menziesii","(at1g21690 : 187.0) embryo defective 1968 (EMB1968); FUNCTIONS IN: in 6 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921), Replication factor C (InterPro:IPR013748); BEST Arabidopsis thaliana protein match is: replication factor C 2 (TAIR:AT1G63160.1). & (reliability: 374.0) &  (original description: no original description)","protein_coding"
"PSME_00034358-RA","No alias","Pseudotsuga menziesii","(at3g47060 : 162.0) encodes an FtsH protease that is localized to the chloroplast; FTSH protease 7 (ftsh7); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 9 (TAIR:AT5G58870.1); Has 41243 Blast hits to 38738 proteins in 3322 species: Archae - 1531; Bacteria - 17472; Metazoa - 4873; Fungi - 3612; Plants - 3353; Viruses - 32; Other Eukaryotes - 10370 (source: NCBI BLink). & (o82150|ftsh_tobac : 114.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco) & (reliability: 324.0) &  (original description: no original description)","protein_coding"
"PSME_00034777-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 691.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 687.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1382.0) &  (original description: no original description)","protein_coding"
"PSME_00035217-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 1380.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 1379.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 2758.0) &  (original description: no original description)","protein_coding"
"PSME_00035382-RA","No alias","Pseudotsuga menziesii","(at2g26140 : 879.0) encodes an FtsH protease that is localized to the mitochondrion; FTSH protease 4 (ftsh4); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: mitochondrion, plastid, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: FTSH protease 11 (TAIR:AT5G53170.1); Has 39775 Blast hits to 37259 proteins in 3240 species: Archae - 1584; Bacteria - 15744; Metazoa - 5149; Fungi - 3764; Plants - 3335; Viruses - 40; Other Eukaryotes - 10159 (source: NCBI BLink). & (q5z974|ftsh_orysa : 347.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 1758.0) &  (original description: no original description)","protein_coding"
"PSME_00036070-RA","No alias","Pseudotsuga menziesii","(at3g15120 : 1065.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: cell division cycle protein 48-related / CDC48-related (TAIR:AT1G05910.1); Has 80986 Blast hits to 58843 proteins in 3591 species: Archae - 1718; Bacteria - 20912; Metazoa - 22400; Fungi - 8848; Plants - 5536; Viruses - 480; Other Eukaryotes - 21092 (source: NCBI BLink). & (p54774|cdc48_soybn : 201.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 2130.0) &  (original description: no original description)","protein_coding"
"PSME_00036301-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 385.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 381.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 770.0) &  (original description: no original description)","protein_coding"
"PSME_00036597-RA","No alias","Pseudotsuga menziesii","(at5g50920 : 1365.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p35100|clpc_pea : 1355.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (reliability: 2730.0) &  (original description: no original description)","protein_coding"
"PSME_00036603-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 413.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 407.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 826.0) &  (original description: no original description)","protein_coding"
"PSME_00036631-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 1229.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 1218.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 2458.0) &  (original description: no original description)","protein_coding"
"PSME_00036743-RA","No alias","Pseudotsuga menziesii","(q96372|cdc48_capan : 343.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (at5g03340 : 312.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 624.0) &  (original description: no original description)","protein_coding"
"PSME_00036828-RA","No alias","Pseudotsuga menziesii","(at5g40010 : 369.0) AAA-ATPase 1 (AATP1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28580.1); Has 35875 Blast hits to 26437 proteins in 2942 species: Archae - 1242; Bacteria - 8120; Metazoa - 8429; Fungi - 4077; Plants - 2736; Viruses - 205; Other Eukaryotes - 11066 (source: NCBI BLink). & (reliability: 738.0) &  (original description: no original description)","protein_coding"
"PSME_00036871-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 333.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 325.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 666.0) &  (original description: no original description)","protein_coding"
"PSME_00036948-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 1117.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 1108.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 2234.0) &  (original description: no original description)","protein_coding"
"PSME_00037119-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 310.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 304.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 608.0) &  (original description: no original description)","protein_coding"
"PSME_00037362-RA","No alias","Pseudotsuga menziesii","(at4g29040 : 706.0) 26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA,; regulatory particle AAA-ATPase 2A (RPT2a); FUNCTIONS IN: ATPase activity; INVOLVED IN: in 17 processes; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G20140.1); Has 31112 Blast hits to 28760 proteins in 3112 species: Archae - 1431; Bacteria - 10308; Metazoa - 4877; Fungi - 3744; Plants - 3214; Viruses - 41; Other Eukaryotes - 7497 (source: NCBI BLink). & (p46466|prs4_orysa : 692.0) 26S protease regulatory subunit 4 homolog (TAT-binding protein homolog 2) - Oryza sativa (Rice) & (reliability: 1412.0) &  (original description: no original description)","protein_coding"
"PSME_00037383-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 700.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 691.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1400.0) &  (original description: no original description)","protein_coding"
"PSME_00037472-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 671.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 665.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1342.0) &  (original description: no original description)","protein_coding"
"PSME_00037665-RA","No alias","Pseudotsuga menziesii","(q96372|cdc48_capan : 596.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (at5g03340 : 595.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1190.0) &  (original description: no original description)","protein_coding"
"PSME_00037777-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 577.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 577.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1154.0) &  (original description: no original description)","protein_coding"
"PSME_00037951-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 610.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 610.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1220.0) &  (original description: no original description)","protein_coding"
"PSME_00038780-RA","No alias","Pseudotsuga menziesii","(at2g29080 : 1015.0) encodes an FtsH protease that is localized to the mitochondrion; FTSH protease 3 (ftsh3); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: proteolysis, protein catabolic process; LOCATED IN: mitochondrion, chloroplast thylakoid membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 10 (TAIR:AT1G07510.1); Has 42068 Blast hits to 39734 proteins in 3332 species: Archae - 1581; Bacteria - 17420; Metazoa - 4814; Fungi - 3774; Plants - 3280; Viruses - 30; Other Eukaryotes - 11169 (source: NCBI BLink). & (q5z974|ftsh_orysa : 420.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Oryza sativa (Rice) & (reliability: 2008.0) &  (original description: no original description)","protein_coding"
"PSME_00038783-RA","No alias","Pseudotsuga menziesii","(p54778|prs6b_soltu : 214.0) 26S protease regulatory subunit 6B homolog - Solanum tuberosum (Potato) & (at5g58290 : 211.0) 26S proteasome AAA-ATPase subunit RPT3 (RPT3) mRNA,; regulatory particle triple-A ATPase 3 (RPT3); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, cell wall, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: regulatory particle AAA-ATPase 2A (TAIR:AT4G29040.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 422.0) &  (original description: no original description)","protein_coding"
"PSME_00038907-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 392.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 388.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 776.0) &  (original description: no original description)","protein_coding"
"PSME_00038946-RA","No alias","Pseudotsuga menziesii","(at1g06430 : 294.0) encodes a FtsH protease that is localized to the chloroplast; FTSH protease 8 (FTSH8); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1); Has 41562 Blast hits to 39150 proteins in 3282 species: Archae - 1592; Bacteria - 17123; Metazoa - 4966; Fungi - 3846; Plants - 3320; Viruses - 34; Other Eukaryotes - 10681 (source: NCBI BLink). & (q9bae0|ftsh_medsa : 154.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Medicago sativa (Alfalfa) & (reliability: 588.0) &  (original description: no original description)","protein_coding"
"PSME_00038954-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 707.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 704.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1414.0) &  (original description: no original description)","protein_coding"
"PSME_00039147-RA","No alias","Pseudotsuga menziesii","(p93431|rca_orysa : 723.0) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) - Oryza sativa (Rice) & (at2g39730 : 706.0) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.; rubisco activase (RCA); FUNCTIONS IN: enzyme regulator activity, ADP binding, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to cold, response to light stimulus, defense response to bacterium; LOCATED IN: in 10 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73110.1); Has 2322 Blast hits to 2274 proteins in 510 species: Archae - 328; Bacteria - 451; Metazoa - 248; Fungi - 425; Plants - 405; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink). & (reliability: 1412.0) &  (original description: no original description)","protein_coding"
"PSME_00039297-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 327.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 323.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 654.0) &  (original description: no original description)","protein_coding"
"PSME_00039931-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 311.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 301.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 622.0) &  (original description: no original description)","protein_coding"
"PSME_00040103-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 492.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 485.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 984.0) &  (original description: no original description)","protein_coding"
"PSME_00040315-RA","No alias","Pseudotsuga menziesii","(at4g29040 : 775.0) 26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA,; regulatory particle AAA-ATPase 2A (RPT2a); FUNCTIONS IN: ATPase activity; INVOLVED IN: in 17 processes; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G20140.1); Has 31112 Blast hits to 28760 proteins in 3112 species: Archae - 1431; Bacteria - 10308; Metazoa - 4877; Fungi - 3744; Plants - 3214; Viruses - 41; Other Eukaryotes - 7497 (source: NCBI BLink). & (p46466|prs4_orysa : 758.0) 26S protease regulatory subunit 4 homolog (TAT-binding protein homolog 2) - Oryza sativa (Rice) & (reliability: 1550.0) &  (original description: no original description)","protein_coding"
"PSME_00040317-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 486.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 483.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 972.0) &  (original description: no original description)","protein_coding"
"PSME_00040580-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 316.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 304.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 632.0) &  (original description: no original description)","protein_coding"
"PSME_00040706-RA","No alias","Pseudotsuga menziesii","(at4g29040 : 710.0) 26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA,; regulatory particle AAA-ATPase 2A (RPT2a); FUNCTIONS IN: ATPase activity; INVOLVED IN: in 17 processes; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G20140.1); Has 31112 Blast hits to 28760 proteins in 3112 species: Archae - 1431; Bacteria - 10308; Metazoa - 4877; Fungi - 3744; Plants - 3214; Viruses - 41; Other Eukaryotes - 7497 (source: NCBI BLink). & (p46466|prs4_orysa : 707.0) 26S protease regulatory subunit 4 homolog (TAT-binding protein homolog 2) - Oryza sativa (Rice) & (reliability: 1420.0) &  (original description: no original description)","protein_coding"
"PSME_00040814-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 548.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 541.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1096.0) &  (original description: no original description)","protein_coding"
"PSME_00040964-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 941.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 939.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1878.0) &  (original description: no original description)","protein_coding"
"PSME_00041016-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 438.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 434.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 876.0) &  (original description: no original description)","protein_coding"
"PSME_00041903-RA","No alias","Pseudotsuga menziesii","(p46466|prs4_orysa : 333.0) 26S protease regulatory subunit 4 homolog (TAT-binding protein homolog 2) - Oryza sativa (Rice) & (at4g29040 : 330.0) 26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA,; regulatory particle AAA-ATPase 2A (RPT2a); FUNCTIONS IN: ATPase activity; INVOLVED IN: in 17 processes; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G20140.1); Has 31112 Blast hits to 28760 proteins in 3112 species: Archae - 1431; Bacteria - 10308; Metazoa - 4877; Fungi - 3744; Plants - 3214; Viruses - 41; Other Eukaryotes - 7497 (source: NCBI BLink). & (reliability: 660.0) &  (original description: no original description)","protein_coding"
"PSME_00042329-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 192.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 186.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 384.0) &  (original description: no original description)","protein_coding"
"PSME_00042616-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 467.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 456.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 934.0) &  (original description: no original description)","protein_coding"
"PSME_00042874-RA","No alias","Pseudotsuga menziesii","(p46466|prs4_orysa : 187.0) 26S protease regulatory subunit 4 homolog (TAT-binding protein homolog 2) - Oryza sativa (Rice) & (at4g29040 : 186.0) 26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA,; regulatory particle AAA-ATPase 2A (RPT2a); FUNCTIONS IN: ATPase activity; INVOLVED IN: in 17 processes; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G20140.1); Has 31112 Blast hits to 28760 proteins in 3112 species: Archae - 1431; Bacteria - 10308; Metazoa - 4877; Fungi - 3744; Plants - 3214; Viruses - 41; Other Eukaryotes - 7497 (source: NCBI BLink). & (reliability: 372.0) &  (original description: no original description)","protein_coding"
"PSME_00043214-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 410.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 399.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 820.0) &  (original description: no original description)","protein_coding"
"PSME_00043375-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 331.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 322.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 662.0) &  (original description: no original description)","protein_coding"
"PSME_00043619-RA","No alias","Pseudotsuga menziesii","(q40281|rca_maldo : 582.0) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) - Malus domestica (Apple) (Malus sylvestris) & (at2g39730 : 549.0) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.; rubisco activase (RCA); FUNCTIONS IN: enzyme regulator activity, ADP binding, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to cold, response to light stimulus, defense response to bacterium; LOCATED IN: in 10 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73110.1); Has 2322 Blast hits to 2274 proteins in 510 species: Archae - 328; Bacteria - 451; Metazoa - 248; Fungi - 425; Plants - 405; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink). & (reliability: 1098.0) &  (original description: no original description)","protein_coding"
"PSME_00043917-RA","No alias","Pseudotsuga menziesii","(q40281|rca_maldo : 293.0) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) - Malus domestica (Apple) (Malus sylvestris) & (at2g39730 : 290.0) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.; rubisco activase (RCA); FUNCTIONS IN: enzyme regulator activity, ADP binding, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to cold, response to light stimulus, defense response to bacterium; LOCATED IN: in 10 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73110.1); Has 2322 Blast hits to 2274 proteins in 510 species: Archae - 328; Bacteria - 451; Metazoa - 248; Fungi - 425; Plants - 405; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink). & (reliability: 580.0) &  (original description: no original description)","protein_coding"
"PSME_00044207-RA","No alias","Pseudotsuga menziesii","(at4g27680 : 237.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G53540.1); Has 30260 Blast hits to 27737 proteins in 3108 species: Archae - 1486; Bacteria - 10702; Metazoa - 4856; Fungi - 3534; Plants - 2690; Viruses - 34; Other Eukaryotes - 6958 (source: NCBI BLink). & (p54774|cdc48_soybn : 83.6) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 474.0) &  (original description: no original description)","protein_coding"
"PSME_00044208-RA","No alias","Pseudotsuga menziesii","(at4g27680 : 251.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G53540.1); Has 30260 Blast hits to 27737 proteins in 3108 species: Archae - 1486; Bacteria - 10702; Metazoa - 4856; Fungi - 3534; Plants - 2690; Viruses - 34; Other Eukaryotes - 6958 (source: NCBI BLink). & (p54774|cdc48_soybn : 94.7) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 502.0) &  (original description: no original description)","protein_coding"
"PSME_00044322-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 327.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 323.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 654.0) &  (original description: no original description)","protein_coding"
"PSME_00044576-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 294.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 292.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 584.0) &  (original description: no original description)","protein_coding"
"PSME_00044731-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 257.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 254.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 514.0) &  (original description: no original description)","protein_coding"
"PSME_00044887-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 319.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g09840 : 316.0) Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation.; cell division cycle 48 (CDC48); FUNCTIONS IN: ATPase activity, identical protein binding; INVOLVED IN: response to cadmium ion, pollen germination, pollen tube growth, cell division, phosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66378 Blast hits to 39099 proteins in 3298 species: Archae - 1713; Bacteria - 29252; Metazoa - 8676; Fungi - 6302; Plants - 5800; Viruses - 77; Other Eukaryotes - 14558 (source: NCBI BLink). & (reliability: 632.0) &  (original description: no original description)","protein_coding"
"PSME_00044996-RA","No alias","Pseudotsuga menziesii","(at5g53350 : 290.0) CLP protease regulatory subunit CLPX mRNA, nuclear gene; CLP protease regulatory subunit X (CLPX); FUNCTIONS IN: unfolded protein binding, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein folding; LOCATED IN: mitochondrion, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), Clp protease, ATP-binding subunit ClpX (InterPro:IPR004487); BEST Arabidopsis thaliana protein match is: ATP-dependent Clp protease (TAIR:AT1G33360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 580.0) &  (original description: no original description)","protein_coding"
"PSME_00045090-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 471.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 467.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 942.0) &  (original description: no original description)","protein_coding"
"PSME_00045109-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 304.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 301.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 602.0) &  (original description: no original description)","protein_coding"
"PSME_00045162-RA","No alias","Pseudotsuga menziesii","(at2g30950 : 242.0) Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.; VARIEGATED 2 (VAR2); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: photoinhibition, oxygen and reactive oxygen species metabolic process, thylakoid membrane organization, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 42824 Blast hits to 40381 proteins in 3333 species: Archae - 1597; Bacteria - 18199; Metazoa - 4991; Fungi - 3835; Plants - 3350; Viruses - 34; Other Eukaryotes - 10818 (source: NCBI BLink). & (o82150|ftsh_tobac : 165.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco) & (reliability: 484.0) &  (original description: no original description)","protein_coding"
"PSME_00045245-RA","No alias","Pseudotsuga menziesii","(at5g40010 : 174.0) AAA-ATPase 1 (AATP1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28580.1); Has 35875 Blast hits to 26437 proteins in 2942 species: Archae - 1242; Bacteria - 8120; Metazoa - 8429; Fungi - 4077; Plants - 2736; Viruses - 205; Other Eukaryotes - 11066 (source: NCBI BLink). & (reliability: 348.0) &  (original description: no original description)","protein_coding"
"PSME_00045354-RA","No alias","Pseudotsuga menziesii","(at1g45000 : 422.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: proteasome complex, plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A ATPase 4A (TAIR:AT5G43010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p46466|prs4_orysa : 233.0) 26S protease regulatory subunit 4 homolog (TAT-binding protein homolog 2) - Oryza sativa (Rice) & (reliability: 844.0) &  (original description: no original description)","protein_coding"
"PSME_00045528-RA","No alias","Pseudotsuga menziesii","(at5g57710 : 241.0) Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: response to karrikin; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-2 (InterPro:IPR013093); BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G30350.1); Has 16657 Blast hits to 15152 proteins in 2785 species: Archae - 23; Bacteria - 13282; Metazoa - 28; Fungi - 336; Plants - 548; Viruses - 0; Other Eukaryotes - 2440 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 83.2) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 482.0) &  (original description: no original description)","protein_coding"
"PSME_00045775-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 363.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 349.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 726.0) &  (original description: no original description)","protein_coding"
"PSME_00045845-RA","No alias","Pseudotsuga menziesii","(at5g57480 : 202.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G25835.1); Has 17733 Blast hits to 16589 proteins in 2814 species: Archae - 1008; Bacteria - 6904; Metazoa - 2230; Fungi - 2111; Plants - 1942; Viruses - 24; Other Eukaryotes - 3514 (source: NCBI BLink). & (reliability: 404.0) &  (original description: no original description)","protein_coding"
"PSME_00046551-RA","No alias","Pseudotsuga menziesii","(at2g30950 : 357.0) Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.; VARIEGATED 2 (VAR2); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: photoinhibition, oxygen and reactive oxygen species metabolic process, thylakoid membrane organization, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 42824 Blast hits to 40381 proteins in 3333 species: Archae - 1597; Bacteria - 18199; Metazoa - 4991; Fungi - 3835; Plants - 3350; Viruses - 34; Other Eukaryotes - 10818 (source: NCBI BLink). & (q39444|ftsh_capan : 174.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (Fragment) - Capsicum annuum (Bell pepper) & (reliability: 714.0) &  (original description: no original description)","protein_coding"
"PSME_00046618-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 311.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 306.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 612.0) &  (original description: no original description)","protein_coding"
"PSME_00046733-RA","No alias","Pseudotsuga menziesii","(at1g06430 : 175.0) encodes a FtsH protease that is localized to the chloroplast; FTSH protease 8 (FTSH8); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1); Has 41562 Blast hits to 39150 proteins in 3282 species: Archae - 1592; Bacteria - 17123; Metazoa - 4966; Fungi - 3846; Plants - 3320; Viruses - 34; Other Eukaryotes - 10681 (source: NCBI BLink). & (o82150|ftsh_tobac : 152.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco) & (reliability: 350.0) &  (original description: no original description)","protein_coding"
"PSME_00046806-RA","No alias","Pseudotsuga menziesii","(at3g28580 : 407.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-ATPase 1 (TAIR:AT5G40010.1); Has 26015 Blast hits to 22183 proteins in 2894 species: Archae - 1297; Bacteria - 7409; Metazoa - 4737; Fungi - 2999; Plants - 2564; Viruses - 69; Other Eukaryotes - 6940 (source: NCBI BLink). & (reliability: 814.0) &  (original description: no original description)","protein_coding"
"PSME_00046838-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 523.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 516.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 1046.0) &  (original description: no original description)","protein_coding"
"PSME_00047115-RA","No alias","Pseudotsuga menziesii","(at5g61700 : 305.0) member of ATH subfamily; ABC2 homolog 16 (ATH16); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 14 (TAIR:AT5G61740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 610.0) &  (original description: no original description)","protein_coding"
"PSME_00047146-RA","No alias","Pseudotsuga menziesii","(at1g77470 : 333.0) Encodes a protein with high homology to the Replication Factor C, Subunit 3 (RFC3) of yeast and other eukaryotes. rfc3 mutants are hypersensitive to salicylic acid and exhibit enhanced induction of PR genes and resistance against virulent oomycete Hyaloperonospora arabidopsidis Noco2. The enhanced pathogen resistance in the mutant is NPR1-independent.; replication factor C subunit 3 (RFC3); FUNCTIONS IN: in 6 functions; INVOLVED IN: negative regulation of defense response; LOCATED IN: DNA replication factor C complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Replication factor C (InterPro:IPR013748), DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal (InterPro:IPR008921); BEST Arabidopsis thaliana protein match is: ATPase family associated with various cellular activities (AAA)  (TAIR:AT1G21690.1); Has 17584 Blast hits to 17541 proteins in 2810 species: Archae - 637; Bacteria - 9895; Metazoa - 902; Fungi - 991; Plants - 392; Viruses - 88; Other Eukaryotes - 4679 (source: NCBI BLink). & (reliability: 666.0) &  (original description: no original description)","protein_coding"
"PSME_00047213-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 526.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 521.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 1042.0) &  (original description: no original description)","protein_coding"
"PSME_00047406-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 312.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 303.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 624.0) &  (original description: no original description)","protein_coding"
"PSME_00047512-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 211.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 205.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 422.0) &  (original description: no original description)","protein_coding"
"PSME_00047637-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 339.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at5g03340 : 334.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 668.0) &  (original description: no original description)","protein_coding"
"PSME_00047773-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 229.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 222.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 458.0) &  (original description: no original description)","protein_coding"
"PSME_00047785-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 494.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 483.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 988.0) &  (original description: no original description)","protein_coding"
"PSME_00047788-RA","No alias","Pseudotsuga menziesii","(at3g09840 : 329.0) Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation.; cell division cycle 48 (CDC48); FUNCTIONS IN: ATPase activity, identical protein binding; INVOLVED IN: response to cadmium ion, pollen germination, pollen tube growth, cell division, phosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66378 Blast hits to 39099 proteins in 3298 species: Archae - 1713; Bacteria - 29252; Metazoa - 8676; Fungi - 6302; Plants - 5800; Viruses - 77; Other Eukaryotes - 14558 (source: NCBI BLink). & (q96372|cdc48_capan : 321.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 658.0) &  (original description: no original description)","protein_coding"
"PSME_00048115-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 530.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 526.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 1052.0) &  (original description: no original description)","protein_coding"
"PSME_00048132-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 492.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 478.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 984.0) &  (original description: no original description)","protein_coding"
"PSME_00048153-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 241.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 235.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 482.0) &  (original description: no original description)","protein_coding"
"PSME_00048372-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 495.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 491.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 990.0) &  (original description: no original description)","protein_coding"
"PSME_00048431-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 494.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 493.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 986.0) &  (original description: no original description)","protein_coding"
"PSME_00048490-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 346.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (p54774|cdc48_soybn : 342.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 692.0) &  (original description: no original description)","protein_coding"
"PSME_00048584-RA","No alias","Pseudotsuga menziesii","(at4g29920 : 421.0) Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; INVOLVED IN: protein metabolic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp amino terminal domain-containing protein (TAIR:AT5G57130.1); Has 2205 Blast hits to 2155 proteins in 769 species: Archae - 7; Bacteria - 1557; Metazoa - 28; Fungi - 31; Plants - 337; Viruses - 0; Other Eukaryotes - 245 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 90.5) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 842.0) &  (original description: no original description)","protein_coding"
"PSME_00049088-RA","No alias","Pseudotsuga menziesii","(q9sbq9|f3ph_pethy : 380.0) Flavonoid 3'-monooxygenase (EC 1.14.13.21) (Flavonoid 3'-hydroxylase) (Cytochrome P450 75B2) - Petunia hybrida (Petunia) & (at5g07990 : 375.0) Required for flavonoid 3' hydroxylase activity.; TRANSPARENT TESTA 7 (TT7); CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 706, subfamily A, polypeptide 6 (TAIR:AT4G12320.1); Has 35179 Blast hits to 34934 proteins in 1774 species: Archae - 51; Bacteria - 4733; Metazoa - 12156; Fungi - 7299; Plants - 9637; Viruses - 3; Other Eukaryotes - 1300 (source: NCBI BLink). & (reliability: 750.0) &  (original description: no original description)","protein_coding"
"PSME_00049200-RA","No alias","Pseudotsuga menziesii","(at3g09840 : 316.0) Encodes a cell division cycle protein, a member of AAA-type ATPases gene family. Expressed throughout the plant in regions of cell division. Within the cell, sub-cellular localization varies depending on the stage of the cell cycle.Mutants in which the expression of CDC48A is altered show defects in cytokinesis, cell expansion and cell differentiation.; cell division cycle 48 (CDC48); FUNCTIONS IN: ATPase activity, identical protein binding; INVOLVED IN: response to cadmium ion, pollen germination, pollen tube growth, cell division, phosphorylation; LOCATED IN: in 9 components; EXPRESSED IN: 33 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66378 Blast hits to 39099 proteins in 3298 species: Archae - 1713; Bacteria - 29252; Metazoa - 8676; Fungi - 6302; Plants - 5800; Viruses - 77; Other Eukaryotes - 14558 (source: NCBI BLink). & (q96372|cdc48_capan : 308.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 632.0) &  (original description: no original description)","protein_coding"
"PSME_00049410-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 285.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 279.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 570.0) &  (original description: no original description)","protein_coding"
"PSME_00050392-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 216.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 208.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 432.0) &  (original description: no original description)","protein_coding"
"PSME_00050503-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 331.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 322.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 662.0) &  (original description: no original description)","protein_coding"
"PSME_00051465-RA","No alias","Pseudotsuga menziesii","(q40281|rca_maldo : 307.0) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) - Malus domestica (Apple) (Malus sylvestris) & (at2g39730 : 300.0) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco.; rubisco activase (RCA); FUNCTIONS IN: enzyme regulator activity, ADP binding, ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity, ATP binding; INVOLVED IN: response to cold, response to light stimulus, defense response to bacterium; LOCATED IN: in 10 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G73110.1); Has 2322 Blast hits to 2274 proteins in 510 species: Archae - 328; Bacteria - 451; Metazoa - 248; Fungi - 425; Plants - 405; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink). & (reliability: 600.0) &  (original description: no original description)","protein_coding"
"PSME_00052332-RA","No alias","Pseudotsuga menziesii","(at1g06430 : 359.0) encodes a FtsH protease that is localized to the chloroplast; FTSH protease 8 (FTSH8); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1); Has 41562 Blast hits to 39150 proteins in 3282 species: Archae - 1592; Bacteria - 17123; Metazoa - 4966; Fungi - 3846; Plants - 3320; Viruses - 34; Other Eukaryotes - 10681 (source: NCBI BLink). & (q39444|ftsh_capan : 264.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (Fragment) - Capsicum annuum (Bell pepper) & (reliability: 718.0) &  (original description: no original description)","protein_coding"
"PSME_00052414-RA","No alias","Pseudotsuga menziesii","(at1g45000 : 541.0) AAA-type ATPase family protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: proteasome complex, plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: regulatory particle triple-A ATPase 4A (TAIR:AT5G43010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q41365|prs7_spiol : 309.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Spinacia oleracea (Spinach) & (reliability: 1082.0) &  (original description: no original description)","protein_coding"
"PSME_00052646-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 192.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 191.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 384.0) &  (original description: no original description)","protein_coding"
"PSME_00052881-RA","No alias","Pseudotsuga menziesii","(at5g03340 : 406.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p54774|cdc48_soybn : 402.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (reliability: 812.0) &  (original description: no original description)","protein_coding"
"PSME_00053727-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 322.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 314.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 644.0) &  (original description: no original description)","protein_coding"
"PSME_00054059-RA","No alias","Pseudotsuga menziesii","(p54774|cdc48_soybn : 515.0) Cell division cycle protein 48 homolog (Valosin-containing protein homolog) (VCP) - Glycine max (Soybean) & (at3g53230 : 511.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (reliability: 1022.0) &  (original description: no original description)","protein_coding"
"PSME_00054172-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 315.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 303.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 630.0) &  (original description: no original description)","protein_coding"
"PSME_00055101-RA","No alias","Pseudotsuga menziesii","(at5g40010 : 305.0) AAA-ATPase 1 (AATP1); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: stem, inflorescence meristem, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28580.1); Has 35875 Blast hits to 26437 proteins in 2942 species: Archae - 1242; Bacteria - 8120; Metazoa - 8429; Fungi - 4077; Plants - 2736; Viruses - 205; Other Eukaryotes - 11066 (source: NCBI BLink). & (reliability: 610.0) &  (original description: no original description)","protein_coding"
"PSME_00055409-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 322.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 307.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 644.0) &  (original description: no original description)","protein_coding"
"PSME_00055410-RA","No alias","Pseudotsuga menziesii","(at2g30950 : 502.0) Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.; VARIEGATED 2 (VAR2); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: photoinhibition, oxygen and reactive oxygen species metabolic process, thylakoid membrane organization, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 42824 Blast hits to 40381 proteins in 3333 species: Archae - 1597; Bacteria - 18199; Metazoa - 4991; Fungi - 3835; Plants - 3350; Viruses - 34; Other Eukaryotes - 10818 (source: NCBI BLink). & (o82150|ftsh_tobac : 329.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (DS9) - Nicotiana tabacum (Common tobacco) & (reliability: 1004.0) &  (original description: no original description)","protein_coding"
"PSME_00055414-RA","No alias","Pseudotsuga menziesii","(at2g30950 : 419.0) Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.; VARIEGATED 2 (VAR2); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: photoinhibition, oxygen and reactive oxygen species metabolic process, thylakoid membrane organization, PSII associated light-harvesting complex II catabolic process, protein catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FTSH protease 8 (TAIR:AT1G06430.1); Has 42824 Blast hits to 40381 proteins in 3333 species: Archae - 1597; Bacteria - 18199; Metazoa - 4991; Fungi - 3835; Plants - 3350; Viruses - 34; Other Eukaryotes - 10818 (source: NCBI BLink). & (q39444|ftsh_capan : 227.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) (Fragment) - Capsicum annuum (Bell pepper) & (reliability: 838.0) &  (original description: no original description)","protein_coding"
"PSME_00055421-RA","No alias","Pseudotsuga menziesii","(q96372|cdc48_capan : 102.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (at5g03340 : 101.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: protein binding, ATPase activity; LOCATED IN: cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: cell division cycle 48 (TAIR:AT3G09840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 202.0) &  (original description: no original description)","protein_coding"
"PSME_00055720-RA","No alias","Pseudotsuga menziesii","(at3g53230 : 338.0) ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). & (q96372|cdc48_capan : 329.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 676.0) &  (original description: no original description)","protein_coding"
"PSME_00056372-RA","No alias","Pseudotsuga menziesii","(at5g57480 : 614.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G25835.1); Has 17733 Blast hits to 16589 proteins in 2814 species: Archae - 1008; Bacteria - 6904; Metazoa - 2230; Fungi - 2111; Plants - 1942; Viruses - 24; Other Eukaryotes - 3514 (source: NCBI BLink). & (reliability: 1228.0) &  (original description: no original description)","protein_coding"
"PSME_00056941-RA","No alias","Pseudotsuga menziesii","(at2g46620 : 414.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G28580.1); Has 14567 Blast hits to 13858 proteins in 2196 species: Archae - 1075; Bacteria - 5270; Metazoa - 1990; Fungi - 1931; Plants - 1602; Viruses - 18; Other Eukaryotes - 2681 (source: NCBI BLink). & (reliability: 828.0) &  (original description: no original description)","protein_coding"
"Seita.1G008800.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.1G042600.1","No alias","Setaria italica ","regulatory component *(RPT6) of 26S proteasome","protein_coding"
"Seita.1G046000.1","No alias","Setaria italica ","regulatory component *(RPT4) of 26S proteasome","protein_coding"
"Seita.1G061300.1","No alias","Setaria italica ","organellar chaperone *(Clp-p/Clp-m)","protein_coding"
"Seita.1G132100.1","No alias","Setaria italica ","unfoldase component *(ClpX) of mitochondrion Clp-type protease complex","protein_coding"
"Seita.1G146700.1","No alias","Setaria italica ","regulatory component *(RPT3) of 26S proteasome","protein_coding"
"Seita.1G177700.1","No alias","Setaria italica ","chaperone component *(ClpD) of chloroplast Clp-type protease complex","protein_coding"
"Seita.1G183700.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.1G183800.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.1G199800.1","No alias","Setaria italica ","unfoldase component *(ClpX) of mitochondrion Clp-type protease complex","protein_coding"
"Seita.1G208900.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.1G253900.1","No alias","Setaria italica ","component *(FtsH7/9) of FtsH plastidial protease complexes","protein_coding"
"Seita.1G283400.1","No alias","Setaria italica ","regulatory protein *(SBA) of mitochondrial nucleoid organization","protein_coding"
"Seita.1G290000.1","No alias","Setaria italica ","regulatory protein *(SBA) of mitochondrial nucleoid organization","protein_coding"
"Seita.1G315100.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.1G320300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.1G337200.1","No alias","Setaria italica ","component *(RFC5) of PCNA sliding clamp loader complex","protein_coding"
"Seita.1G343700.1","No alias","Setaria italica ","regulatory component *(RPT1) of 26S proteasome","protein_coding"
"Seita.1G355700.1","No alias","Setaria italica ","regulatory component *(RPT5) of 26S proteasome","protein_coding"
"Seita.2G003800.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G069800.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G070500.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G070700.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G070800.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G128300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G130100.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G213800.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G223100.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G272400.1","No alias","Setaria italica ","component *(BRAT1) of anti-silencing regulator complex","protein_coding"
"Seita.2G333100.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G333200.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G333300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G333400.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G425500.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.2G440400.1","No alias","Setaria italica ","LON-type protease","protein_coding"
"Seita.2G442000.1","No alias","Setaria italica ","regulatory component *(RPT2) of 26S proteasome","protein_coding"
"Seita.3G023400.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.3G091800.1","No alias","Setaria italica ","chaperone component *(ClpC) of chloroplast Clp-type protease complex","protein_coding"
"Seita.3G121400.1","No alias","Setaria italica ","ATP-dependent metalloprotease *(FtsH4/11)","protein_coding"
"Seita.3G124500.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.3G124600.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.3G124700.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.3G129000.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.3G167000.1","No alias","Setaria italica ","unfoldase component *(ClpX) of mitochondrion Clp-type protease complex","protein_coding"
"Seita.3G175700.1","No alias","Setaria italica ","cytosolic chaperone *(Hsp101)","protein_coding"
"Seita.3G176000.1","No alias","Setaria italica ","EC_3.6 hydrolase acting on acid anhydride & regulatory ATPase *(NSF/SEC18)","protein_coding"
"Seita.3G217900.1","No alias","Setaria italica ","component *(Fts3/10) of FtsH3/10 matrix-AAA protease heterodimers","protein_coding"
"Seita.3G300300.1","No alias","Setaria italica ","EC_3.6 hydrolase acting on acid anhydride & ATPase component *(FIGL1) of FIGL1-FLIP meiotic crossover regulator complex","protein_coding"
"Seita.3G340600.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.3G340700.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.3G407200.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.3G407300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.3G407400.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.4G006800.1","No alias","Setaria italica ","platform ATPase CDC48","protein_coding"
"Seita.4G019600.1","No alias","Setaria italica ","EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Seita.4G042600.1","No alias","Setaria italica ","regulatory component *(RPT1) of 26S proteasome","protein_coding"
"Seita.4G045900.1","No alias","Setaria italica ","component *(ORC1) of origin recognition complex","protein_coding"
"Seita.4G056700.1","No alias","Setaria italica ","regulatory component *(RPT5) of 26S proteasome","protein_coding"
"Seita.4G096600.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.4G099200.1","No alias","Setaria italica ","EXECUTER-cleavage protease *(FtsH2) & protease *(FtsH2/8) & component *(FtsH1/2/5/6/8) of FtsH plastidial protease complexes","protein_coding"
"Seita.4G220800.1","No alias","Setaria italica ","regulatory component *(RPT4) of 26S proteasome","protein_coding"
"Seita.4G225000.1","No alias","Setaria italica ","regulatory component *(RPT6) of 26S proteasome","protein_coding"
"Seita.4G245000.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.4G245200.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.4G245700.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.4G267400.1","No alias","Setaria italica ","EXECUTER-cleavage protease *(FtsH2) & protease *(FtsH2/8) & component *(FtsH1/2/5/6/8) of FtsH plastidial protease complexes","protein_coding"
"Seita.4G279300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.4G285900.1","No alias","Setaria italica ","protease *(FtsH1/5) & component *(FtsH1/2/5/6/8) of FtsH plastidial protease complexes","protein_coding"
"Seita.5G011600.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G011800.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G012100.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G097000.1","No alias","Setaria italica ","ATPase component *(VPS4/SKD1) of VPS4-VTA1 ESCRT-disassembly complex & EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Seita.5G207700.1","No alias","Setaria italica ","ATP-dependent metalloprotease *(FtsH4/11)","protein_coding"
"Seita.5G218000.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G229300.1","No alias","Setaria italica ","ATP-dependent metalloprotease *(FtsH4/11)","protein_coding"
"Seita.5G231900.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G240900.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.5G263700.1","No alias","Setaria italica ","component *(BRP1) of anti-silencing regulator complex & component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination heterodimer","protein_coding"
"Seita.5G266600.1","No alias","Setaria italica ","EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Seita.5G273100.1","No alias","Setaria italica ","catalytic component of Katanin ATP-dependent microtubule severing complex & EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Seita.5G315500.1","No alias","Setaria italica ","cytosolic chaperone *(Hsp101)","protein_coding"
"Seita.5G315900.1","No alias","Setaria italica ","EC_3.6 hydrolase acting on acid anhydride & regulatory ATPase *(NSF/SEC18)","protein_coding"
"Seita.5G323500.1","No alias","Setaria italica ","EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Seita.5G370800.1","No alias","Setaria italica ","LON-type protease","protein_coding"
"Seita.5G377900.1","No alias","Setaria italica ","component *(Fts3/10) of FtsH3/10 matrix-AAA protease heterodimers","protein_coding"
"Seita.5G407000.1","No alias","Setaria italica ","unfoldase component *(ClpX) of mitochondrion Clp-type protease complex","protein_coding"
"Seita.6G076400.1","No alias","Setaria italica ","chaperone component *(ClpC) of chloroplast Clp-type protease complex","protein_coding"
"Seita.6G143900.1","No alias","Setaria italica ","platform ATPase CDC48","protein_coding"
"Seita.6G246200.1","No alias","Setaria italica ","component *(Pex1) of Pex1-Pex6 subcomplex","protein_coding"
"Seita.7G079400.1","No alias","Setaria italica ","chaperone component *(ClpC) of chloroplast Clp-type protease complex","protein_coding"
"Seita.7G079600.1","No alias","Setaria italica ","chaperone component *(ClpC) of chloroplast Clp-type protease complex","protein_coding"
"Seita.7G086400.1","No alias","Setaria italica ","chaperone component *(ClpD) of chloroplast Clp-type protease complex","protein_coding"
"Seita.7G129200.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.7G138000.1","No alias","Setaria italica ","meiotic crossover pachytene checkpoint protein *(PCH2/CRC1)","protein_coding"
"Seita.7G154500.1","No alias","Setaria italica ","platform ATPase CDC48","protein_coding"
"Seita.7G203200.1","No alias","Setaria italica ","component *(RFC2) of PCNA sliding clamp loader complex","protein_coding"
"Seita.7G238600.1","No alias","Setaria italica ","component *(Pex6) of Pex1-Pex6 subcomplex","protein_coding"
"Seita.7G284400.1","No alias","Setaria italica ","component *(RFC4) of PCNA sliding clamp loader complex","protein_coding"
"Seita.8G093400.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.8G157900.1","No alias","Setaria italica ","component *(RFC1) of PCNA sliding clamp loader complex","protein_coding"
"Seita.8G204900.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.8G223700.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.8G250400.1","No alias","Setaria italica ","ATP-dependent activase involved in RuBisCo regulation","protein_coding"
"Seita.8G251200.1","No alias","Setaria italica ","ATP-dependent activase involved in RuBisCo regulation","protein_coding"
"Seita.8G251300.1","No alias","Setaria italica ","ATP-dependent activase involved in RuBisCo regulation","protein_coding"
"Seita.9G050000.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G134400.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G159400.1","No alias","Setaria italica ","regulatory component *(RPT3) of 26S proteasome","protein_coding"
"Seita.9G190200.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G239600.1","No alias","Setaria italica ","platform ATPase CDC48","protein_coding"
"Seita.9G301300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G314100.1","No alias","Setaria italica ","platform ATPase CDC48","protein_coding"
"Seita.9G358900.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G360800.1","No alias","Setaria italica ","organellar chaperone *(Clp-p/Clp-m)","protein_coding"
"Seita.9G371300.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G394700.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G407500.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G430400.1","No alias","Setaria italica ","LON-type protease","protein_coding"
"Seita.9G436500.1","No alias","Setaria italica ","regulatory component *(RPT2) of 26S proteasome","protein_coding"
"Seita.9G455000.1","No alias","Setaria italica ","spindle assembly checkpoint protein *(RAD17)","protein_coding"
"Seita.9G456800.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Seita.9G537700.1","No alias","Setaria italica ","platform ATPase CDC48","protein_coding"
"Seita.9G539900.1","No alias","Setaria italica ","platform ATPase CDC48","protein_coding"
"Seita.9G543600.1","No alias","Setaria italica ","platform ATPase CDC48","protein_coding"
"Seita.9G569500.1","No alias","Setaria italica ","Unknown function","protein_coding"
"Sobic.001G051600.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G157800.1","No alias","Sorghum bicolor ","regulatory component *(RPT3) of 26S proteasome","protein_coding"
"Sobic.001G161700.1","No alias","Sorghum bicolor ","EC_3.6 hydrolase acting on acid anhydride & regulatory ATPase *(NSF/SEC18)","protein_coding"
"Sobic.001G192800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G236300.1","No alias","Sorghum bicolor ","platform ATPase CDC48","protein_coding"
"Sobic.001G331301.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G333500.1","No alias","Sorghum bicolor ","organellar chaperone *(Clp-p/Clp-m)","protein_coding"
"Sobic.001G361900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G375100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G396500.1","No alias","Sorghum bicolor ","LON-type protease","protein_coding"
"Sobic.001G427400.2","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.001G429200.1","No alias","Sorghum bicolor ","spindle assembly checkpoint protein *(RAD17)","protein_coding"
"Sobic.001G458700.1","No alias","Sorghum bicolor ","regulatory component *(RPT3) of 26S proteasome","protein_coding"
"Sobic.001G486600.1","No alias","Sorghum bicolor ","component *(RFC4) of PCNA sliding clamp loader complex","protein_coding"
"Sobic.001G501300.1","No alias","Sorghum bicolor ","platform ATPase CDC48","protein_coding"
"Sobic.001G508000.1","No alias","Sorghum bicolor ","platform ATPase CDC48","protein_coding"
"Sobic.001G508300.1","No alias","Sorghum bicolor ","platform ATPase CDC48","protein_coding"
"Sobic.001G533600.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G067000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G067300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G067400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G067500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G210100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G219500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G263700.1","No alias","Sorghum bicolor ","component *(BRAT1) of anti-silencing regulator complex","protein_coding"
"Sobic.002G275600.1","No alias","Sorghum bicolor ","component *(RFC1) of PCNA sliding clamp loader complex","protein_coding"
"Sobic.002G276100.1","No alias","Sorghum bicolor ","LON-type protease","protein_coding"
"Sobic.002G319400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G319500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G319600.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G319700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G319766.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G319832.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G319900.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G413000.2","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.002G426400.1","No alias","Sorghum bicolor ","LON-type protease","protein_coding"
"Sobic.002G428200.1","No alias","Sorghum bicolor ","regulatory component *(RPT2) of 26S proteasome","protein_coding"
"Sobic.003G011000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.003G046200.2","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.003G077900.1","No alias","Sorghum bicolor ","ATPase component *(VPS4/SKD1) of VPS4-VTA1 ESCRT-disassembly complex & EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Sobic.003G195000.1","No alias","Sorghum bicolor ","ATP-dependent metalloprotease *(FtsH4/11)","protein_coding"
"Sobic.003G212300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.003G213100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.003G222900.1","No alias","Sorghum bicolor ","ATP-dependent metalloprotease *(FtsH4/11)","protein_coding"
"Sobic.003G225800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.003G235300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.003G248600.1","No alias","Sorghum bicolor ","regulatory component *(RPT1) of 26S proteasome","protein_coding"
"Sobic.003G250900.1","No alias","Sorghum bicolor ","component *(BRP1) of anti-silencing regulator complex & component *(BRCA1/BARD1) of BRCA1-BARD1 ubiquitination heterodimer","protein_coding"
"Sobic.003G252900.3","No alias","Sorghum bicolor ","EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Sobic.003G259400.1","No alias","Sorghum bicolor ","catalytic component of Katanin ATP-dependent microtubule severing complex & EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Sobic.003G293500.1","No alias","Sorghum bicolor ","cytosolic chaperone *(Hsp101)","protein_coding"
"Sobic.003G300900.1","No alias","Sorghum bicolor ","EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Sobic.003G352900.1","No alias","Sorghum bicolor ","component *(Fts3/10) of FtsH3/10 matrix-AAA protease heterodimers","protein_coding"
"Sobic.003G381600.1","No alias","Sorghum bicolor ","unfoldase component *(ClpX) of mitochondrion Clp-type protease complex","protein_coding"
"Sobic.004G066500.1","No alias","Sorghum bicolor ","organellar chaperone *(Clp-p/Clp-m)","protein_coding"
"Sobic.004G082900.1","No alias","Sorghum bicolor ","regulatory component *(RPT4) of 26S proteasome","protein_coding"
"Sobic.004G086600.1","No alias","Sorghum bicolor ","regulatory component *(RPT6) of 26S proteasome","protein_coding"
"Sobic.004G118700.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.004G131040.1","No alias","Sorghum bicolor ","unfoldase component *(ClpX) of mitochondrion Clp-type protease complex","protein_coding"
"Sobic.004G162400.1","No alias","Sorghum bicolor ","chaperone component *(ClpD) of chloroplast Clp-type protease complex","protein_coding"
"Sobic.004G168200.2","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.004G183800.1","No alias","Sorghum bicolor ","unfoldase component *(ClpX) of mitochondrion Clp-type protease complex","protein_coding"
"Sobic.004G236400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.004G243600.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.004G266900.1","No alias","Sorghum bicolor ","regulatory protein *(SBA) of mitochondrial nucleoid organization","protein_coding"
"Sobic.004G272400.1","No alias","Sorghum bicolor ","regulatory protein *(SBA) of mitochondrial nucleoid organization","protein_coding"
"Sobic.004G300000.1","No alias","Sorghum bicolor ","component *(FtsH7/9) of FtsH plastidial protease complexes","protein_coding"
"Sobic.004G315500.1","No alias","Sorghum bicolor ","component *(RFC5) of PCNA sliding clamp loader complex","protein_coding"
"Sobic.004G321900.1","No alias","Sorghum bicolor ","regulatory component *(RPT1) of 26S proteasome","protein_coding"
"Sobic.004G335000.1","No alias","Sorghum bicolor ","regulatory component *(RPT5) of 26S proteasome","protein_coding"
"Sobic.005G098800.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.005G160100.1","No alias","Sorghum bicolor ","component *(RFC1) of PCNA sliding clamp loader complex","protein_coding"
"Sobic.005G207500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.005G231500.1","No alias","Sorghum bicolor ","ATP-dependent activase involved in RuBisCo regulation","protein_coding"
"Sobic.005G231600.1","No alias","Sorghum bicolor ","ATP-dependent activase involved in RuBisCo regulation","protein_coding"
"Sobic.006G058100.1","No alias","Sorghum bicolor ","chaperone component *(ClpC) of chloroplast Clp-type protease complex","protein_coding"
"Sobic.006G065100.1","No alias","Sorghum bicolor ","chaperone component *(ClpD) of chloroplast Clp-type protease complex","protein_coding"
"Sobic.006G080100.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.006G111600.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.006G120600.1","No alias","Sorghum bicolor ","meiotic crossover pachytene checkpoint protein *(PCH2/CRC1)","protein_coding"
"Sobic.006G135900.1","No alias","Sorghum bicolor ","platform ATPase CDC48","protein_coding"
"Sobic.006G183100.1","No alias","Sorghum bicolor ","component *(RFC2) of PCNA sliding clamp loader complex","protein_coding"
"Sobic.006G216800.1","No alias","Sorghum bicolor ","component *(Pex6) of Pex1-Pex6 subcomplex","protein_coding"
"Sobic.006G248700.2","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.007G006000.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.007G027800.2","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.007G125200.1","No alias","Sorghum bicolor ","platform ATPase CDC48","protein_coding"
"Sobic.007G172400.1","No alias","Sorghum bicolor ","component *(Pex1) of Pex1-Pex6 subcomplex","protein_coding"
"Sobic.008G056900.1","No alias","Sorghum bicolor ","component *(RFC4) of PCNA sliding clamp loader complex","protein_coding"
"Sobic.008G081900.1","No alias","Sorghum bicolor ","chaperone component *(ClpC) of chloroplast Clp-type protease complex","protein_coding"
"Sobic.008G092800.1","No alias","Sorghum bicolor ","EC_3.6 hydrolase acting on acid anhydride & ATPase component *(FIGL1) of FIGL1-FLIP meiotic crossover regulator complex","protein_coding"
"Sobic.008G123200.2","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.008G123300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.008G191200.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.008G191300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.009G162600.1","No alias","Sorghum bicolor ","component *(Fts3/10) of FtsH3/10 matrix-AAA protease heterodimers","protein_coding"
"Sobic.009G201500.1","No alias","Sorghum bicolor ","cytosolic chaperone *(Hsp101)","protein_coding"
"Sobic.009G210000.1","No alias","Sorghum bicolor ","unfoldase component *(ClpX) of mitochondrion Clp-type protease complex","protein_coding"
"Sobic.009G248300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.009G252400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.009G252500.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.009G252600.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.009G256500.1","No alias","Sorghum bicolor ","ATP-dependent metalloprotease *(FtsH4/11)","protein_coding"
"Sobic.010G007100.1","No alias","Sorghum bicolor ","platform ATPase CDC48","protein_coding"
"Sobic.010G020300.1","No alias","Sorghum bicolor ","EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Sobic.010G057900.1","No alias","Sorghum bicolor ","regulatory component *(RPT5) of 26S proteasome","protein_coding"
"Sobic.010G067900.1","No alias","Sorghum bicolor ","component *(ORC1) of origin recognition complex","protein_coding"
"Sobic.010G091400.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.010G092900.1","No alias","Sorghum bicolor ","EXECUTER-cleavage protease *(FtsH2) & protease *(FtsH2/8) & component *(FtsH1/2/5/6/8) of FtsH plastidial protease complexes","protein_coding"
"Sobic.010G114200.1","No alias","Sorghum bicolor ","catalytic component of Katanin ATP-dependent microtubule severing complex & EC_3.6 hydrolase acting on acid anhydride","protein_coding"
"Sobic.010G182000.1","No alias","Sorghum bicolor ","regulatory component *(RPT6) of 26S proteasome","protein_coding"
"Sobic.010G187600.1","No alias","Sorghum bicolor ","regulatory component *(RPT4) of 26S proteasome","protein_coding"
"Sobic.010G223200.1","No alias","Sorghum bicolor ","EXECUTER-cleavage protease *(FtsH2) & protease *(FtsH2/8) & component *(FtsH1/2/5/6/8) of FtsH plastidial protease complexes","protein_coding"
"Sobic.010G247200.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.010G247300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.010G265300.1","No alias","Sorghum bicolor ","Unknown function","protein_coding"
"Sobic.010G272800.1","No alias","Sorghum bicolor ","protease *(FtsH1/5) & component *(FtsH1/2/5/6/8) of FtsH plastidial protease complexes","protein_coding"
"Solyc01g017140","No alias","Solanum lycopersicum","Protein Ycf2 (AHRD V3.3 *-* YCF2_SOLLC)","protein_coding"
"Solyc01g068330","No alias","Solanum lycopersicum","cell division cycle 48 (AHRD V3.3 *** AT3G09840.1)","protein_coding"
"Solyc01g094150","No alias","Solanum lycopersicum","Katanin p60 ATPase-containing subunit (AHRD V3.3 *-* A0A1D1Y047_9ARAE)","protein_coding"
"Solyc01g096230","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT2G46620.1)","protein_coding"
"Solyc01g099760","No alias","Solanum lycopersicum","LeMA-1 putatve Mg-dependent ATPase 1","protein_coding"
"Solyc01g102990","No alias","Solanum lycopersicum","ATP-dependent clp protease ATP-binding subunit clpx, putative (AHRD V3.3 *** B9SPA4_RICCO)","protein_coding"
"Solyc01g104920","No alias","Solanum lycopersicum","AAA-type ATPase family protein (AHRD V3.3 *** AT4G04910.1)","protein_coding"
"Solyc01g107690","No alias","Solanum lycopersicum","ATP-dependent Clp protease ATP-binding subunit ClpX (AHRD V3.3 *-* A0A1D1XQW5_9ARAE)","protein_coding"
"Solyc01g109940","No alias","Solanum lycopersicum","26S proteasomal subunit RPT4a","protein_coding"
"Solyc02g014350","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT3G19740.1)","protein_coding"
"Solyc02g032970","No alias","Solanum lycopersicum","ATP-dependent zinc metalloprotease FtsH (AHRD V3.3 *** A0A0B0PX39_GOSAR)","protein_coding"
"Solyc02g036330","No alias","Solanum lycopersicum","26S protease regulatory subunit, putative (AHRD V3.3 *** B9RXE9_RICCO)","protein_coding"
"Solyc02g062550","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT3G50940.1)","protein_coding"
"Solyc02g062700","No alias","Solanum lycopersicum","AAA-type ATPase family protein (AHRD V3.3 *** AT2G18330.1)","protein_coding"
"Solyc02g069750","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT3G28580.2)","protein_coding"
"Solyc02g070440","No alias","Solanum lycopersicum","Katanin p60 ATPase-containing subunit, putative (AHRD V3.3 *** B9S114_RICCO)","protein_coding"
"Solyc02g079000","No alias","Solanum lycopersicum","ATP-dependent zinc metalloprotease FTSH protein (AHRD V3.3 *** G7LB10_MEDTR)","protein_coding"
"Solyc02g081550","No alias","Solanum lycopersicum","LeftsH6FtsH protease","protein_coding"
"Solyc02g084090","No alias","Solanum lycopersicum","ATP-dependent Clp protease ATP-binding subunit ClpX (AHRD V3.3 *-* A0A0B2QD15_GLYSO)","protein_coding"
"Solyc02g084120","No alias","Solanum lycopersicum","ATP-dependent Clp protease ATP-binding subunit ClpX (AHRD V3.3 *-* W9RJ61_9ROSA)","protein_coding"
"Solyc02g084900","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT2G18193.1)","protein_coding"
"Solyc02g084910","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT5G17760.1)","protein_coding"
"Solyc02g087530","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT3G28610.1)","protein_coding"
"Solyc02g087540","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT3G28510.1)","protein_coding"
"Solyc02g088610","No alias","Solanum lycopersicum","LeHSP110/ClpB heat shock protein","protein_coding"
"Solyc02g094100","No alias","Solanum lycopersicum","Katanin p60 ATPase-containing subunit A1 (AHRD V3.3 *-* KTNA1_ARATH)","protein_coding"
"Solyc03g006420","No alias","Solanum lycopersicum","Origin recognition complex subunit 1 (AHRD V3.3 *** A0A0B2RND7_GLYSO)","protein_coding"
"Solyc03g007330","No alias","Solanum lycopersicum","ATP-dependent zinc metalloprotease FTSH protein (AHRD V3.3 *** A0A072VFQ6_MEDTR)","protein_coding"
"Solyc03g007760","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT4G28000.1)","protein_coding"
"Solyc03g033790","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT3G50940.1)","protein_coding"
"Solyc03g033820","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT3G50940.1)","protein_coding"
"Solyc03g033840","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT3G50940.1)","protein_coding"
"Solyc03g046340","No alias","Solanum lycopersicum","ATP-dependent zinc metalloprotease FtsH (AHRD V3.3 *** W9RE71_9ROSA)","protein_coding"
"Solyc03g082630","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT5G53540.1)","protein_coding"
"Solyc03g082640","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT2G46620.1)","protein_coding"
"Solyc03g083250","No alias","Solanum lycopersicum","ATP-dependent clp protease ATP-binding subunit clpx, putative (AHRD V3.3 *** B9RSF1_RICCO)","protein_coding"
"Solyc03g097020","No alias","Solanum lycopersicum","AAA-type ATPase family protein","protein_coding"
"Solyc03g110900","No alias","Solanum lycopersicum","P-loop nucleoside triphosphate hydrolase superfamily protein, putative (AHRD V3.3 *** A0A072UYW1_MEDTR)","protein_coding"
"Solyc03g112590","No alias","Solanum lycopersicum","cell division cycle 48 (AHRD V3.3 *** AT3G09840.1)","protein_coding"
"Solyc03g115230","No alias","Solanum lycopersicum","Solanum lycopersicum heat shock protein","protein_coding"
"Solyc03g117850","No alias","Solanum lycopersicum","Ribulose bisphosphate carboxylase/oxygenase activase (AHRD V3.3 *** A0A072VDJ3_MEDTR)","protein_coding"
"Solyc03g117950","No alias","Solanum lycopersicum","ATP-dependent Clp protease (AHRD V3.3 *** A0A059Q1P9_9POAL)","protein_coding"
"Solyc03g118320","No alias","Solanum lycopersicum","AAA family ATPase (AHRD V3.3 *** G7KFD2_MEDTR)","protein_coding"
"Solyc03g118340","No alias","Solanum lycopersicum","Chloroplast ATP-dependent Clp protease chaperone protein (AHRD V3.3 *** A0A088FCE7_NICBE)","protein_coding"
"Solyc03g123730","No alias","Solanum lycopersicum","26S protease regulatory subunit (AHRD V3.3 *** T2DN87_PHAVU)","protein_coding"
"Solyc04g039760","No alias","Solanum lycopersicum","Protein Ycf2 (AHRD V3.3 *-* YCF2_SOLLC)","protein_coding"
"Solyc04g057960","No alias","Solanum lycopersicum","Peroxisome biogenesis protein 1 (AHRD V3.3 *** A0A061GC53_THECC)","protein_coding"
"Solyc04g063360","No alias","Solanum lycopersicum","ATP-dependent zinc metalloprotease FTSH (AHRD V3.3 *** W9S040_9ROSA)","protein_coding"
"Solyc04g076180","No alias","Solanum lycopersicum","Cell division cycle protein 48 (AHRD V3.3 *** U5FI94_POPTR)","protein_coding"
"Solyc04g080680","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT3G50940.1)","protein_coding"
"Solyc04g082250","No alias","Solanum lycopersicum","FtsH-like protein precursor","protein_coding"
"Solyc05g007470","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT3G28580.1)","protein_coding"
"Solyc05g008540","No alias","Solanum lycopersicum","Origin recognition complex subunit 4 (AHRD V3.3 *** K4BX28_SOLLC)","protein_coding"
"Solyc05g012190","No alias","Solanum lycopersicum","cell division cycle 48 (AHRD V3.3 *** AT3G09840.1)","protein_coding"
"Solyc05g015060","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT3G50940.1)","protein_coding"
"Solyc05g018570","No alias","Solanum lycopersicum","26S protease regulatory subunit, putative (AHRD V3.3 *** B9STQ0_RICCO)","protein_coding"
"Solyc05g018590","No alias","Solanum lycopersicum","26S protease regulatory subunit, putative (AHRD V3.3 *** B9STQ0_RICCO)","protein_coding"
"Solyc06g005950","No alias","Solanum lycopersicum","ATP-dependent zinc metalloprotease FTSH protein (AHRD V3.3 *** G7K6A4_MEDTR)","protein_coding"
"Solyc06g008730","No alias","Solanum lycopersicum","Cell division cycle protein 48 homolog (AHRD V3.3 *** CDC48_CAPAN)","protein_coding"
"Solyc06g011370","No alias","Solanum lycopersicum","Chaperone protein (AHRD V3.3 *** W9QX74_9ROSA)","protein_coding"
"Solyc06g051460","No alias","Solanum lycopersicum","Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein, putative (AHRD V3.3 *** A0A061FKC4_THECC)","protein_coding"
"Solyc06g053150","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT2G46620.1)","protein_coding"
"Solyc06g053160","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT4G27680.1)","protein_coding"
"Solyc06g060150","No alias","Solanum lycopersicum","replication factor C subunit 3 (AHRD V3.3 *** AT1G77470.1)","protein_coding"
"Solyc06g063140","No alias","Solanum lycopersicum","26S protease regulatory subunit, putative (AHRD V3.3 *** B9RR13_RICCO)","protein_coding"
"Solyc06g063410","No alias","Solanum lycopersicum","ATP-dependent clp protease ATP-binding subunit clpx, putative (AHRD V3.3 *** B9S1U1_RICCO)","protein_coding"
"Solyc06g066810","No alias","Solanum lycopersicum","Katanin p60 ATPase-containing subunit A1 (AHRD V3.3 *** K4C7V5_SOLLC)","protein_coding"
"Solyc06g071980","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT4G24860.4)","protein_coding"
"Solyc06g072000","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT4G24860.4)","protein_coding"
"Solyc06g074980","No alias","Solanum lycopersicum","cell division cycle 48 (AHRD V3.3 *** AT3G09840.1)","protein_coding"
"Solyc06g082560","No alias","Solanum lycopersicum","Chaperone protein (AHRD V3.3 *** W9RSC3_9ROSA)","protein_coding"
"Solyc06g082630","No alias","Solanum lycopersicum","26S protease regulatory subunit 6B homolog (AHRD V3.3 *** PRS6B_SOLTU)","protein_coding"
"Solyc06g082660","No alias","Solanum lycopersicum","26S protease regulatory subunit 6B homolog (AHRD V3.3 *** PRS6B_SOLTU)","protein_coding"
"Solyc06g083620","No alias","Solanum lycopersicum","26S protease regulatory subunit (AHRD V3.3 *** A0A199VGJ0_ANACO)","protein_coding"
"Solyc06g084530","No alias","Solanum lycopersicum","ATPase family AAA domain-containing protein 1 (AHRD V3.3 *** A0A0B0NTB1_GOSAR)","protein_coding"
"Solyc07g005880","No alias","Solanum lycopersicum","Replication factor C subunit 1 (AHRD V3.3 *** A0A061FPV6_THECC)","protein_coding"
"Solyc07g006540","No alias","Solanum lycopersicum","Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** A0A061GWZ5_THECC)","protein_coding"
"Solyc07g023990","No alias","Solanum lycopersicum","AAA-type ATPase family protein (AHRD V3.3 *** B9ILM7_POPTR)","protein_coding"
"Solyc07g062760","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative (AHRD V3.3 *** A0A061F6Y4_THECC)","protein_coding"
"Solyc08g014590","No alias","Solanum lycopersicum","Protein Ycf2 (AHRD V3.3 *-* YCF2_SOLLC)","protein_coding"
"Solyc08g021990","No alias","Solanum lycopersicum","26S protease regulatory subunit-like protein (AHRD V3.3 *** D3G8A3_LOLPR)","protein_coding"
"Solyc08g063050","No alias","Solanum lycopersicum","ATP-dependent zinc metalloprotease FTSH protein (AHRD V3.3 *** G7J7N5_MEDTR)","protein_coding"
"Solyc08g077440","No alias","Solanum lycopersicum","Lon protease homolog 2, peroxisomal (AHRD V3.3 *** K4CNA3_SOLLC)","protein_coding"
"Solyc08g080510","No alias","Solanum lycopersicum","Replication factor C subunit 2 (AHRD V3.3 *** RFC2_ARATH)","protein_coding"
"Solyc08g081740","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT1G64110.5)","protein_coding"
"Solyc08g082530","No alias","Solanum lycopersicum","ATP-dependent zinc metalloprotease FtsH (AHRD V3.3 *** W9SBH3_9ROSA)","protein_coding"
"Solyc08g083030","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT4G27680.1)","protein_coding"
"Solyc09g008070","No alias","Solanum lycopersicum","cell division cycle 48 (AHRD V3.3 *** AT3G09840.1)","protein_coding"
"Solyc09g010950","No alias","Solanum lycopersicum","ATP-dependent zinc metalloprotease FtsH (AHRD V3.3 *** A0A0K9PCT4_ZOSMR)","protein_coding"
"Solyc09g011080","No alias","Solanum lycopersicum","Ribulose bisphosphate carboxylase/oxygenase activase (AHRD V3.3 *** V9IMY5_NICAT)","protein_coding"
"Solyc09g055230","No alias","Solanum lycopersicum","Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein, putative (AHRD V3.3 *** A0A061GZV7_THECC)","protein_coding"
"Solyc09g074950","No alias","Solanum lycopersicum","ATPase family AAA domain-containing protein 1 (AHRD V3.3 *** A0A0B0NTB1_GOSAR)","protein_coding"
"Solyc09g091650","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT1G04730.1)","protein_coding"
"Solyc10g007280","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT3G50940.1)","protein_coding"
"Solyc10g019190","No alias","Solanum lycopersicum","Katanin p60 ATPase-containing subunit A1 (AHRD V3.3 *** K4DEU6_SOLLC)","protein_coding"
"Solyc10g024320","No alias","Solanum lycopersicum","Lon protease homolog, mitochondrial (AHRD V3.3 *** A0A0V0IX74_SOLCH)","protein_coding"
"Solyc10g054040","No alias","Solanum lycopersicum","26S protease regulatory subunit (AHRD V3.3 *** A0A0K9PSD5_ZOSMR)","protein_coding"
"Solyc10g078320","No alias","Solanum lycopersicum","cell division cycle 48 (AHRD V3.3 *** AT3G09840.1)","protein_coding"
"Solyc10g079630","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT3G50940.1)","protein_coding"
"Solyc10g084050","No alias","Solanum lycopersicum","cell division cycle 48 (AHRD V3.3 *** AT3G09840.1)","protein_coding"
"Solyc10g086540","No alias","Solanum lycopersicum","ATP-dependent zinc metalloprotease FtsH (AHRD V3.3 *** A0A0K9PCT4_ZOSMR)","protein_coding"
"Solyc10g086550","No alias","Solanum lycopersicum","ATP-dependent zinc metalloprotease FTSH protein (AHRD V3.3 *** G7JUV4_MEDTR)","protein_coding"
"Solyc10g086580","No alias","Solanum lycopersicum","Ribulose bisphosphate carboxylase/oxygenase activase (AHRD V3.3 *** V9IMY5_NICAT)","protein_coding"
"Solyc11g007170","No alias","Solanum lycopersicum","Katanin p60 ATPase-containing subunit A1 (AHRD V3.3 *** A0A0J8ECK3_BETVU)","protein_coding"
"Solyc11g008250","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *-* AT3G10420.2)","protein_coding"
"Solyc11g012820","No alias","Solanum lycopersicum","Replication factor C subunit (AHRD V3.3 *** A0A0K9NM53_ZOSMR)","protein_coding"
"Solyc11g013570","No alias","Solanum lycopersicum","Katanin p60 ATPase-containing subunit A1 (AHRD V3.3 *** K4DEU6_SOLLC)","protein_coding"
"Solyc11g013650","No alias","Solanum lycopersicum","Katanin p60 ATPase-containing subunit A1 (AHRD V3.3 *** K4DEU6_SOLLC)","protein_coding"
"Solyc11g013700","No alias","Solanum lycopersicum","Katanin p60 ATPase-containing subunit A1 (AHRD V3.3 *** K4DEU6_SOLLC)","protein_coding"
"Solyc11g050800","No alias","Solanum lycopersicum","Katanin p60 ATPase-containing subunit A1 (AHRD V3.3 *** K4D8Q1_SOLLC)","protein_coding"
"Solyc11g050880","No alias","Solanum lycopersicum","Katanin p60 ATPase-containing subunit A1 (AHRD V3.3 *** K4D8Q1_SOLLC)","protein_coding"
"Solyc11g067230","No alias","Solanum lycopersicum","Katanin p60 ATPase-containing subunit A1 (AHRD V3.3 *** KTNA1_ARATH)","protein_coding"
"Solyc11g067240","No alias","Solanum lycopersicum","Katanin p60 ATPase-containing subunit A1 (AHRD V3.3 *** KTNA1_ARATH)","protein_coding"
"Solyc11g069720","No alias","Solanum lycopersicum","Cell division cycle protein 48 homolog (AHRD V3.3 *** CDC48_CAPAN)","protein_coding"
"Solyc11g069950","No alias","Solanum lycopersicum","FtsH protease","protein_coding"
"Solyc12g007100","No alias","Solanum lycopersicum","AAA-type ATPase family protein / ankyrin repeat family protein (AHRD V3.3 *** AT3G24530.1)","protein_coding"
"Solyc12g014150","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT1G73170.3)","protein_coding"
"Solyc12g040520","No alias","Solanum lycopersicum","Katanin p60 ATPase-containing subunit A1 (AHRD V3.3 *** K4DEU6_SOLLC)","protein_coding"
"Solyc12g044400","No alias","Solanum lycopersicum","ATP-dependent zinc metalloprotease FtsH (AHRD V3.3 *** W9R6A6_9ROSA)","protein_coding"
"Solyc12g055810","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein (AHRD V3.3 *** AT5G57480.1)","protein_coding"
"Solyc12g076340","No alias","Solanum lycopersicum","P-loop containing nucleoside triphosphate hydrolases superfamily protein isoform 1 (AHRD V3.3 *-* A0A061FVJ2_THECC)","protein_coding"
"Sopen01g030300","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen01g033270","No alias","Solanum pennellii","Domain associated at C-terminal with AAA","protein_coding"
"Sopen01g037950","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen01g039990","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen01g043280","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen01g045400","No alias","Solanum pennellii","AAA domain (Cdc48 subfamily)","protein_coding"
"Sopen01g047430","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen01g049860","No alias","Solanum pennellii","AAA domain (Cdc48 subfamily)","protein_coding"
"Sopen01g052130","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen02g003380","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen02g009120","No alias","Solanum pennellii","Plant protein of unknown function (DUF825)","protein_coding"
"Sopen02g011360","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen02g011700","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen02g013560","No alias","Solanum pennellii","Domain associated at C-terminal with AAA","protein_coding"
"Sopen02g013720","No alias","Solanum pennellii","Domain of unknown function (DUF3523)","protein_coding"
"Sopen02g018900","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen02g019530","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen02g023810","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen02g026180","No alias","Solanum pennellii","Peptidase family M41","protein_coding"
"Sopen02g028900","No alias","Solanum pennellii","AAA domain (Cdc48 subfamily)","protein_coding"
"Sopen02g029570","No alias","Solanum pennellii","Domain associated at C-terminal with AAA","protein_coding"
"Sopen02g029580","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen02g032280","No alias","Solanum pennellii","Domain associated at C-terminal with AAA","protein_coding"
"Sopen02g032290","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen02g032300","No alias","Solanum pennellii","Domain associated at C-terminal with AAA","protein_coding"
"Sopen02g033340","No alias","Solanum pennellii","AAA domain (Cdc48 subfamily)","protein_coding"
"Sopen02g038160","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen02g038720","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen03g002430","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen03g003290","No alias","Solanum pennellii","Peptidase family M41","protein_coding"
"Sopen03g003680","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen03g006560","No alias","Solanum pennellii","Domain associated at C-terminal with AAA","protein_coding"
"Sopen03g006570","No alias","Solanum pennellii","Domain associated at C-terminal with AAA","protein_coding"
"Sopen03g006590","No alias","Solanum pennellii","Domain associated at C-terminal with AAA","protein_coding"
"Sopen03g006600","No alias","Solanum pennellii","Domain associated at C-terminal with AAA","protein_coding"
"Sopen03g009850","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen03g022390","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen03g022400","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen03g023000","No alias","Solanum pennellii","AAA domain (Cdc48 subfamily)","protein_coding"
"Sopen03g027770","No alias","Solanum pennellii","Domain of unknown function (DUF3523)","protein_coding"
"Sopen03g030090","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen03g031660","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen03g034270","No alias","Solanum pennellii","AAA domain (Cdc48 subfamily)","protein_coding"
"Sopen03g036770","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen03g036850","No alias","Solanum pennellii","AAA domain (Cdc48 subfamily)","protein_coding"
"Sopen03g037220","No alias","Solanum pennellii","MgsA AAA+ ATPase C terminal","protein_coding"
"Sopen03g037240","No alias","Solanum pennellii","AAA domain (Cdc48 subfamily)","protein_coding"
"Sopen03g041500","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen04g025820","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen04g026280","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen04g030020","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen04g034270","No alias","Solanum pennellii","Domain associated at C-terminal with AAA","protein_coding"
"Sopen04g035870","No alias","Solanum pennellii","Peptidase family M41","protein_coding"
"Sopen05g003350","No alias","Solanum pennellii","Domain associated at C-terminal with AAA","protein_coding"
"Sopen05g004380","No alias","Solanum pennellii","Origin recognition complex (ORC) subunit 4 C-terminus","protein_coding"
"Sopen05g007020","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen05g010290","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen05g015680","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen05g015740","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen06g001920","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen06g003520","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen06g006060","No alias","Solanum pennellii","AAA domain (Cdc48 subfamily)","protein_coding"
"Sopen06g017420","No alias","Solanum pennellii","AAA domain (Cdc48 subfamily)","protein_coding"
"Sopen06g018220","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen06g018230","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen06g020270","No alias","Solanum pennellii","Replication factor C C-terminal domain","protein_coding"
"Sopen06g022590","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen06g022870","No alias","Solanum pennellii","AAA domain (Cdc48 subfamily)","protein_coding"
"Sopen06g025100","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen06g028260","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen06g028280","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen06g031380","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen06g033960","No alias","Solanum pennellii","AAA domain (Cdc48 subfamily)","protein_coding"
"Sopen06g034030","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen06g034050","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen06g035010","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen06g035910","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen07g001990","No alias","Solanum pennellii","Replication factor RFC1 C terminal domain","protein_coding"
"Sopen07g002620","No alias","Solanum pennellii","AAA domain (Cdc48 subfamily)","protein_coding"
"Sopen07g012210","No alias","Solanum pennellii","Ankyrin repeats (3 copies)","protein_coding"
"Sopen07g026900","No alias","Solanum pennellii","Peptidase family M41","protein_coding"
"Sopen07g030990","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen08g018620","No alias","Solanum pennellii","Peptidase family M41","protein_coding"
"Sopen08g026030","No alias","Solanum pennellii","Lon protease (S16) C-terminal proteolytic domain","protein_coding"
"Sopen08g028830","No alias","Solanum pennellii","Replication factor C C-terminal domain","protein_coding"
"Sopen08g030040","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen08g030790","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen08g031230","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen09g002870","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen09g005670","No alias","Solanum pennellii","Peptidase family M41","protein_coding"
"Sopen09g005830","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen09g017150","No alias","Solanum pennellii","AAA domain (Cdc48 subfamily)","protein_coding"
"Sopen09g029770","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen09g034560","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen10g003100","No alias","Solanum pennellii","Domain associated at C-terminal with AAA","protein_coding"
"Sopen10g008920","No alias","Solanum pennellii","Plant protein of unknown function (DUF825)","protein_coding"
"Sopen10g009280","No alias","Solanum pennellii","Lon protease (S16) C-terminal proteolytic domain","protein_coding"
"Sopen10g010410","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen10g012360","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen10g023900","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen10g028980","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen10g030270","No alias","Solanum pennellii","Domain associated at C-terminal with AAA","protein_coding"
"Sopen10g033500","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen10g035920","No alias","Solanum pennellii","Peptidase family M41","protein_coding"
"Sopen10g035930","No alias","Solanum pennellii","Peptidase family M41","protein_coding"
"Sopen10g035980","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen11g003090","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen11g004060","No alias","Solanum pennellii","AAA domain","protein_coding"
"Sopen11g007560","No alias","Solanum pennellii","Replication factor C C-terminal domain","protein_coding"
"Sopen11g008620","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen11g008690","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen11g022070","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen11g026920","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen11g026930","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen11g028560","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen11g028630","No alias","Solanum pennellii","Peptidase family M41","protein_coding"
"Sopen12g003080","No alias","Solanum pennellii","Ankyrin repeats (3 copies)","protein_coding"
"Sopen12g005940","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen12g021150","No alias","Solanum pennellii","AAA domain (Cdc48 subfamily)","protein_coding"
"Sopen12g022670","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"
"Sopen12g024290","No alias","Solanum pennellii","Domain associated at C-terminal with AAA","protein_coding"
"Sopen12g027590","No alias","Solanum pennellii","ATPase family associated with various cellular activities (AAA)","protein_coding"