Sequence Description Alias PCC hrr evm.model.tig00021435.47 (at3g43810 : 276.0) EF hand domain protein encodes a calmodulin. Can functionally complement a yeast CaM mutant.; calmodulin 7 (CAM7); FUNCTIONS IN: calcium ion binding; INVOLVED IN: detection of calcium ion, calcium-mediated signaling, regulation of photomorphogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 5 (TAIR:AT2G27030.3); Has 33955 Blast hits to 23167 proteins in 1763 species: Archae - 4; Bacteria - 223; Metazoa - 14467; Fungi - 7347; Plants - 6966; Viruses - 0; Other Eukaryotes - 4948 (source: NCBI BLink). & (p17928|calm_medsa : 275.0) Calmodulin (CaM) - Medicago sativa (Alfalfa) & (reliability: 552.0) & (original description: no original description) 0.9602822599108485 3 evm.model.tig00021357.13 no hits & (original description: no original description) 0.9573071321239872 2 evm.model.tig00020693.8 (at2g16860 : 147.0) GCIP-interacting family protein; CONTAINS InterPro DOMAIN/s: mRNA splicing factor SYF2 (InterPro:IPR013260); Has 2586 Blast hits to 2013 proteins in 293 species: Archae - 27; Bacteria - 123; Metazoa - 700; Fungi - 265; Plants - 138; Viruses - 7; Other Eukaryotes - 1326 (source: NCBI BLink). & (reliability: 294.0) & (original description: no original description) 0.9549285534014389 3 evm.model.tig00000737.2 (original description: no original description) 0.9455839336761125 13 evm.model.tig00021537.6 no hits & (original description: no original description) 0.9420004634120981 15 evm.model.tig00001029.14 no hits & (original description: no original description) 0.9403546714061334 6 evm.model.tig00000144.125 (at3g18430 : 116.0) Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: calmodulin 9 (TAIR:AT3G51920.1). & (p04464|calm_wheat : 80.5) Calmodulin (CaM) - Triticum aestivum (Wheat) & (reliability: 232.0) & (original description: no original description) 0.9396823785356202 11 evm.model.tig00021435.44 (at3g43810 : 228.0) EF hand domain protein encodes a calmodulin. Can functionally complement a yeast CaM mutant.; calmodulin 7 (CAM7); FUNCTIONS IN: calcium ion binding; INVOLVED IN: detection of calcium ion, calcium-mediated signaling, regulation of photomorphogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 5 (TAIR:AT2G27030.3); Has 33955 Blast hits to 23167 proteins in 1763 species: Archae - 4; Bacteria - 223; Metazoa - 14467; Fungi - 7347; Plants - 6966; Viruses - 0; Other Eukaryotes - 4948 (source: NCBI BLink). & (p17928|calm_medsa : 227.0) Calmodulin (CaM) - Medicago sativa (Alfalfa) & (reliability: 456.0) & (original description: no original description) 0.936561529263827 14 evm.model.tig00021281.10 no hits & (original description: no original description) 0.9317489859647055 11 evm.model.tig00001187.3 (at2g30000 : 220.0) PHF5-like protein; CONTAINS InterPro DOMAIN/s: PHF5-like (InterPro:IPR005345); BEST Arabidopsis thaliana protein match is: PHF5-like protein (TAIR:AT1G07170.3); Has 420 Blast hits to 420 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 128; Plants - 86; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). & (reliability: 440.0) & (original description: no original description) 0.9293626471680062 24 evm.model.tig00021043.13 no hits & (original description: no original description) 0.9282428082745577 26 evm.model.tig00021589.6 no hits & (original description: no original description) 0.9268663892313642 12 evm.model.tig00000241.28 (at1g09760 : 99.0) U2 small nuclear ribonucleoprotein A (U2A'); INVOLVED IN: nuclear mRNA splicing, via spliceosome, response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U2A'/phosphoprotein 32 family A, C-terminal (InterPro:IPR003603); Has 8109 Blast hits to 6297 proteins in 450 species: Archae - 0; Bacteria - 3635; Metazoa - 3194; Fungi - 303; Plants - 219; Viruses - 2; Other Eukaryotes - 756 (source: NCBI BLink). & (reliability: 198.0) & (original description: no original description) 0.9255929968099856 32 evm.model.tig00000615.68 (at5g54840 : 191.0) Monomeric G protein. Expressed in the root quiescent center, flowers, and leaf guard cells and hydathodes.; SGP1; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTPase (InterPro:IPR020851), Mitochondrial Rho-like (InterPro:IPR013684), GTPase, Tem1 (InterPro:IPR017231); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT3G21700.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q40191|rb11a_lotja : 91.7) Ras-related protein Rab11A - Lotus japonicus & (reliability: 382.0) & (original description: no original description) 0.9251261779467956 14 evm.model.tig00000808.43 (at1g56450 : 253.0) 20S proteasome beta subunit PBG1 (PBG1) mRNA, complete cds; 20S proteasome beta subunit G1 (PBG1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to cadmium ion, response to salt stress, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, cytosolic ribosome; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome endopeptidase complex, beta subunit (InterPro:IPR016295), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT4G31300.2); Has 2530 Blast hits to 2530 proteins in 413 species: Archae - 597; Bacteria - 46; Metazoa - 632; Fungi - 578; Plants - 277; Viruses - 0; Other Eukaryotes - 400 (source: NCBI BLink). & (reliability: 506.0) & (original description: no original description) 0.9239384700811903 17 evm.model.tig00000342.15 (at1g60890 : 95.5) Phosphatidylinositol-4-phosphate 5-kinase family protein; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: Phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G10900.1). & (q6ex42|pi5k1_orysa : 91.3) Phosphatidylinositol-4-phosphate 5-kinase 1 precursor (EC 2.7.1.68) (1-phosphatidylinositol-4-phosphate kinase) (PIP5K) (PtdIns(4)P-5-kinase) (Diphosphoinositide kinase) - Oryza sativa (Rice) & (reliability: 191.0) & (original description: no original description) 0.9228023570915602 18 evm.model.tig00000133.51 no hits & (original description: no original description) 0.9224974102788247 41 evm.model.tig00020554.144 no hits & (original description: no original description) 0.9211703239326255 35 evm.model.tig00020848.67 (at1g60970 : 179.0) SNARE-like superfamily protein; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: clathrin vesicle coat; EXPRESSED IN: leaf whorl, sperm cell, pedicel; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: SNARE-like superfamily protein (TAIR:AT3G09800.1); Has 621 Blast hits to 621 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 139; Plants - 149; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink). & (reliability: 358.0) & (original description: no original description) 0.9202199872556335 19 evm.model.tig00020553.48 (at2g23930 : 97.4) probable small nuclear ribonucleoprotein G (SNRNP-G); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G11500.1); Has 1073 Blast hits to 1073 proteins in 252 species: Archae - 104; Bacteria - 0; Metazoa - 399; Fungi - 257; Plants - 180; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink). & (p24715|ruxg_medsa : 91.3) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G) (SmG) - Medicago sativa (Alfalfa) & (reliability: 194.8) & (original description: no original description) 0.9199952582262516 28 evm.model.tig00021571.12 (at1g20575 : 304.0) Nucleotide-diphospho-sugar transferases superfamily protein; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT2G39630.1); Has 22705 Blast hits to 22656 proteins in 2589 species: Archae - 933; Bacteria - 16103; Metazoa - 288; Fungi - 260; Plants - 98; Viruses - 23; Other Eukaryotes - 5000 (source: NCBI BLink). & (reliability: 608.0) & (original description: no original description) 0.9183518311607967 21 evm.model.tig00001181.26 no hits & (original description: no original description) 0.9172901715339904 22 evm.model.tig00021589.12 (at5g51940 : 113.0) One of two highly similar proteins that can serve as a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB6 and the E. coli RNA polymerase omega subunit. Probably redundant with At2g04630.; NRPB6A; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription, DNA-dependent; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, 14-18kDa subunit, conserved site (InterPro:IPR020708), RNA polymerase subunit, RPB6/omega (InterPro:IPR012293), RNA polymerase Rpb6 (InterPro:IPR006110), DNA-directed RNA polymerase, 14-18kDa subunit (InterPro:IPR006111); BEST Arabidopsis thaliana protein match is: RNA polymerase Rpb6 (TAIR:AT2G04630.1); Has 907 Blast hits to 906 proteins in 313 species: Archae - 223; Bacteria - 0; Metazoa - 99; Fungi - 194; Plants - 79; Viruses - 16; Other Eukaryotes - 296 (source: NCBI BLink). & (reliability: 226.0) & (original description: no original description) 0.9171009746692679 23 evm.model.tig00001265.7 (at3g49601 : 98.2) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 196.4) & (original description: no original description) 0.9166087998357778 24 evm.model.tig00000944.55 no hits & (original description: no original description) 0.9158885018868145 45 evm.model.tig00000411.74 no hits & (original description: no original description) 0.9158274560689902 26 evm.model.tig00020918.3 no hits & (original description: no original description) 0.9151133205584452 27 evm.model.tig00000792.7 (at5g20570 : 196.0) Encodes a ring-box 1 like protein and component of the SCF ubiquitinization complex mediating auxin responses. Forms a E3 ubiquitin ligase complex with CUL3A and At1g21780.1 a BTB domain protein.; RING-box 1 (RBX1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G42830.1); Has 1088 Blast hits to 1088 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 498; Fungi - 214; Plants - 176; Viruses - 3; Other Eukaryotes - 197 (source: NCBI BLink). & (reliability: 392.0) & (original description: no original description) 0.9142469994145174 33 evm.model.tig00020614.75 (at2g42680 : 125.0) One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is developmentally regulated.; multiprotein bridging factor 1A (MBF1A); CONTAINS InterPro DOMAIN/s: Lambda repressor-like, DNA-binding (InterPro:IPR010982), Multiprotein bridging factor 1, N-terminal (InterPro:IPR013729), Helix-turn-helix type 3 (InterPro:IPR001387); BEST Arabidopsis thaliana protein match is: multiprotein bridging factor 1B (TAIR:AT3G58680.1); Has 672 Blast hits to 672 proteins in 252 species: Archae - 42; Bacteria - 8; Metazoa - 193; Fungi - 147; Plants - 135; Viruses - 2; Other Eukaryotes - 145 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description) 0.9127978049829293 29 evm.model.tig00000692.67 (at2g07340 : 82.0) PREFOLDIN 1 (PFD1); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777), Prefoldin (InterPro:IPR009053); Has 281 Blast hits to 281 proteins in 130 species: Archae - 13; Bacteria - 2; Metazoa - 136; Fungi - 51; Plants - 52; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). & (reliability: 164.0) & (original description: no original description) 0.9121786865772232 39 evm.model.tig00000944.19 (at4g30220 : 128.0) small nuclear ribonucleoprotein F (RUXF); FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G14285.1). & (reliability: 256.0) & (original description: no original description) 0.9109455297250587 42 evm.model.tig00000241.83 no hits & (original description: no original description) 0.9104023892075862 36 evm.model.tig00001085.12 no hits & (original description: no original description) 0.9103973578634159 33 evm.model.tig00000144.169 no hits & (original description: no original description) 0.908377225794378 34 evm.model.tig00000983.13 (at3g60810 : 84.7) unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1499 (InterPro:IPR010865); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 169.4) & (original description: no original description) 0.9082342592459721 35 evm.model.tig00000821.8 (at1g21900 : 129.0) emp24/gp25L/p24 family/GOLD family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT1G09580.1); Has 1629 Blast hits to 1627 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 735; Fungi - 476; Plants - 235; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink). & (reliability: 240.0) & (original description: no original description) 0.9058236563342974 36 evm.model.tig00000342.28 no hits & (original description: no original description) 0.9053871314198674 41 evm.model.tig00000241.37 (at5g09920 : 94.0) Non-catalytic subunit specific to DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB4); NRPB4; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT4G15950.1); Has 441 Blast hits to 441 proteins in 181 species: Archae - 4; Bacteria - 0; Metazoa - 144; Fungi - 150; Plants - 95; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). & (reliability: 188.0) & (original description: no original description) 0.9051314470475135 38 evm.model.tig00001532.9 no hits & (original description: no original description) 0.9048886413558366 39 evm.model.tig00000980.5 no hits & (original description: no original description) 0.9048169267089035 47 evm.model.tig00020912.48 no hits & (original description: no original description) 0.9047643615851411 41 evm.model.tig00000076.87 "(at2g30260 : 88.2) encodes U2B"", which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled body and the nucleus.; U2 small nuclear ribonucleoprotein B (U2B''); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: cis assembly of pre-catalytic spliceosome; LOCATED IN: nucleoplasm, Cajal body, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G06960.1); Has 1885 Blast hits to 1858 proteins in 260 species: Archae - 0; Bacteria - 2; Metazoa - 926; Fungi - 414; Plants - 327; Viruses - 1; Other Eukaryotes - 215 (source: NCBI BLink). & (reliability: 176.4) & (original description: no original description)" 0.9042047221639194 42 evm.model.tig00001001.10 no hits & (original description: no original description) 0.903464801125514 43 evm.model.tig00000655.49 (at5g19490 : 100.0) Histone superfamily protein; FUNCTIONS IN: sequence-specific DNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C11 (TAIR:AT3G12480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 194.2) & (original description: no original description) 0.9033744326349236 44 evm.model.tig00001085.15 no hits & (original description: no original description) 0.9025331441537647 45 evm.model.tig00020554.142 (at1g18800 : 162.0) Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP1. Bind histones Histone2A and Histone2B and associate with chromatin in vivo.; NAP1-related protein 2 (NRP2); FUNCTIONS IN: chromatin binding, histone binding, DNA binding; INVOLVED IN: cell proliferation, cell differentiation, nucleosome assembly, lateral root formation; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleosome assembly protein (NAP) (InterPro:IPR002164); BEST Arabidopsis thaliana protein match is: NAP1-related protein 1 (TAIR:AT1G74560.2); Has 4380 Blast hits to 3595 proteins in 373 species: Archae - 7; Bacteria - 141; Metazoa - 1827; Fungi - 714; Plants - 336; Viruses - 93; Other Eukaryotes - 1262 (source: NCBI BLink). & (reliability: 324.0) & (original description: no original description) 0.9022996191365698 46 evm.model.tig00000144.24 (at2g40650 : 249.0) PRP38 family protein; CONTAINS InterPro DOMAIN/s: PRP38 (InterPro:IPR005037); BEST Arabidopsis thaliana protein match is: SART-1 family (TAIR:AT5G16780.1); Has 71927 Blast hits to 24591 proteins in 1125 species: Archae - 74; Bacteria - 21911; Metazoa - 26638; Fungi - 6334; Plants - 3978; Viruses - 317; Other Eukaryotes - 12675 (source: NCBI BLink). & (reliability: 498.0) & (original description: no original description) 0.9020032015701805 47 evm.model.tig00000704.72 no hits & (original description: no original description) 0.9019157649106201 48 evm.model.tig00000663.16 (at1g03330 : 142.0) Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), U6 snRNA-associated Sm-like protein LSm2 (InterPro:IPR016654), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); Has 762 Blast hits to 762 proteins in 209 species: Archae - 2; Bacteria - 0; Metazoa - 303; Fungi - 225; Plants - 97; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink). & (reliability: 284.0) & (original description: no original description) 0.9002292428342703 49 evm.model.tig00000737.30 no hits & (original description: no original description) 0.8997200968158116 50 evm.model.tig00000388.39 no hits & (original description: no original description) 0.8993354297075644 51 evm.model.tig00000507.27 no hits & (original description: no original description) 0.8974686641035032 52 evm.model.tig00001187.13 no hits & (original description: no original description) 0.8972980678002512 53 evm.model.tig00000128.6 no hits & (original description: no original description) 0.8972750910140498 70 evm.model.tig00001093.5 no hits & (original description: no original description) 0.8971893112397776 55 evm.model.tig00021351.15 (at1g51510 : 128.0) This gene is predicted to encode a protein involved in the exon junction complex. Though there is a predicted RNA binding motif, in the Drosophila ortholog (33% identity), this motif mediates interactions with Mago and is not available for RNA binding. The Arabidopsis Y14 protein appears to be predominantly nucleolar, but there is also some evidence for its presence in the cytoplasm.; Y14; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: nucleoplasm, exon-exon junction complex, nuclear body, nucleolus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA-binding motif protein 8 (InterPro:IPR008111); BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 (TAIR:AT5G64200.2); Has 11259 Blast hits to 10017 proteins in 625 species: Archae - 2; Bacteria - 976; Metazoa - 6273; Fungi - 1165; Plants - 1793; Viruses - 0; Other Eukaryotes - 1050 (source: NCBI BLink). & (reliability: 256.0) & (original description: no original description) 0.8968427987904354 56 evm.model.tig00000076.116 no hits & (original description: no original description) 0.8960850890320223 57 evm.model.tig00000551.18 no hits & (original description: no original description) 0.8957516715728288 71 evm.model.tig00000704.50 no hits & (original description: no original description) 0.895550311696704 59 evm.model.tig00000402.27 (at5g54750 : 228.0) Transport protein particle (TRAPP) component; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ER to Golgi vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194), TRAPP I complex, Bet3 (InterPro:IPR016721). & (reliability: 456.0) & (original description: no original description) 0.8955392350320696 60 evm.model.tig00000863.20 (at1g52600 : 180.0) Peptidase S24/S26A/S26B/S26C family protein; FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis, signal peptide processing; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B, conserved region (InterPro:IPR019759), Peptidase S26B, eukaryotic signal peptidase (InterPro:IPR001733), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927); BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT3G15710.1); Has 958 Blast hits to 958 proteins in 409 species: Archae - 89; Bacteria - 293; Metazoa - 225; Fungi - 153; Plants - 91; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). & (reliability: 360.0) & (original description: no original description) 0.8948178867202574 61 evm.model.tig00000829.15 no hits & (original description: no original description) 0.8947910592585872 62 evm.model.tig00021352.5 (at1g51510 : 152.0) This gene is predicted to encode a protein involved in the exon junction complex. Though there is a predicted RNA binding motif, in the Drosophila ortholog (33% identity), this motif mediates interactions with Mago and is not available for RNA binding. The Arabidopsis Y14 protein appears to be predominantly nucleolar, but there is also some evidence for its presence in the cytoplasm.; Y14; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: nucleoplasm, exon-exon junction complex, nuclear body, nucleolus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA-binding motif protein 8 (InterPro:IPR008111); BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 (TAIR:AT5G64200.2); Has 11259 Blast hits to 10017 proteins in 625 species: Archae - 2; Bacteria - 976; Metazoa - 6273; Fungi - 1165; Plants - 1793; Viruses - 0; Other Eukaryotes - 1050 (source: NCBI BLink). & (reliability: 304.0) & (original description: no original description) 0.8946206870191813 63 evm.model.tig00020904.56 (at5g11900 : 94.4) Translation initiation factor SUI1 family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Density-regulated protein DRP1 (InterPro:IPR005873); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 188.8) & (original description: no original description) 0.8934777393713272 64 evm.model.tig00021616.22 no hits & (original description: no original description) 0.893053268946568 70 evm.model.tig00021432.33 (at5g49400 : 98.2) zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); Has 46316 Blast hits to 20637 proteins in 1119 species: Archae - 19; Bacteria - 12274; Metazoa - 18717; Fungi - 3822; Plants - 2024; Viruses - 338; Other Eukaryotes - 9122 (source: NCBI BLink). & (reliability: 196.4) & (original description: no original description) 0.8929866830710804 66 evm.model.tig00001339.5 (at3g60820 : 231.0) Encodes 20S proteasome beta subunit PBF1 (PBF1).; PBF1; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: defense response to fungus, incompatible interaction, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: proteasome beta subunit C1 (TAIR:AT1G21720.1). & (o64464|psb1_orysa : 231.0) Proteasome subunit beta type 1 (EC 3.4.25.1) (20S proteasome alpha subunit F) (20S proteasome subunit beta-6) - Oryza sativa (Rice) & (reliability: 462.0) & (original description: no original description) 0.8929222404767129 67 evm.model.tig00000769.36 (at5g23290 : 103.0) prefoldin 5 (PFD5); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin alpha-like (InterPro:IPR004127), Prefoldin (InterPro:IPR009053), Prefoldin alpha subunit (InterPro:IPR011599); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 206.0) & (original description: no original description) 0.8916597296520886 68 evm.model.tig00000403.42 no hits & (original description: no original description) 0.8913400174348403 69 evm.model.tig00022075.29 (at4g31720 : 120.0) Arabidopsis thaliana putative TBP-associated 15 kDa subunit protein (TAFII15); TBP-associated factor II 15 (TAFII15); FUNCTIONS IN: RNA polymerase II transcription factor activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID, 23-30kDa subunit (InterPro:IPR003923); Has 372 Blast hits to 372 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 132; Plants - 56; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). & (reliability: 240.0) & (original description: no original description) 0.89101497710537 70 evm.model.tig00001187.20 (p46465|prs6a_orysa : 599.0) 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) - Oryza sativa (Rice) & (at3g05530 : 590.0) Encodes RPT5a (Regulatory Particle 5a), one of the six AAA-ATPases of the proteasome regulatory particle. Essential for gametophyte development. In Arabidopsis, the RPT5 subunit is encoded by two highly homologous genes, RPT5a and RPT5b. RPT5a and RPT5b show accession-dependent functional redundancy. In Wassilewskija (Ws) accession: mutant alleles of RPT5a displayed 50% pollen lethality, indicating that RPT5a is essential for male gametophyte development. In the Columbia (Col) accession, a rpt5a mutant allele did not display such a phenotype because the RPT5b Col allele complements the rpt5a defect in the male gametophyte, whereas the RPT5b Ws allele does not. Double rpt5a rpt5b mutants in Col background showed a complete male and female gametophyte lethal phenotype.; regulatory particle triple-A ATPase 5A (RPT5A); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: 26S proteasome AAA-ATPase subunit RPT5B (TAIR:AT1G09100.1); Has 33265 Blast hits to 30927 proteins in 3145 species: Archae - 1437; Bacteria - 12044; Metazoa - 4947; Fungi - 3672; Plants - 3322; Viruses - 56; Other Eukaryotes - 7787 (source: NCBI BLink). & (reliability: 1180.0) & (original description: no original description) 0.8908394265212511 71 evm.model.tig00021464.30 (at4g14965 : 102.0) membrane-associated progesterone binding protein 4 (MAPR4); FUNCTIONS IN: heme binding; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: membrane-associated progesterone binding protein 2 (TAIR:AT2G24940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description) 0.8907830243349263 72 evm.model.tig00021464.27 no hits & (original description: no original description) 0.8906723620790118 73 evm.model.tig00020904.75 no hits & (original description: no original description) 0.8903407531118139 74 evm.model.tig00000241.9 no hits & (original description: no original description) 0.8903162644502757 75 evm.model.tig00020531.47 no hits & (original description: no original description) 0.8899710821684537 76 evm.model.tig00021123.33 (at5g37055 : 108.0) Encodes SERRATED LEAVES AND EARLY FLOWERING (SEF), an Arabidopsis homolog of the yeast SWC6 protein, a conserved subunit of the SWR1/SRCAP complex. SEF loss-of-function mutants have a pleiotropic phenotype characterized by serrated leaves, frequent absence of inflorescence internodes, bushy aspect, and flowers with altered number and size of organs. sef plants flower earlier than wild-type plants both under inductive and non-inductive photoperiods. SEF, ARP6 and PIE1 might form a molecular complex in Arabidopsis related to the SWR1/SRCAP complex identified in other eukaryotes.; SERRATED LEAVES AND EARLY FLOWERING (SEF); CONTAINS InterPro DOMAIN/s: Zinc finger, HIT-type (InterPro:IPR007529); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description) 0.8897067224919709 77 evm.model.tig00020780.62 (at3g22480 : 117.0) prefoldin 2 (PDF2); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777), Prefoldin (InterPro:IPR009053); Has 423 Blast hits to 423 proteins in 206 species: Archae - 15; Bacteria - 0; Metazoa - 139; Fungi - 122; Plants - 68; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description) 0.8895173441414066 78 evm.model.tig00021133.4 (at3g62840 : 152.0) Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G47640.3); Has 794 Blast hits to 794 proteins in 230 species: Archae - 2; Bacteria - 0; Metazoa - 329; Fungi - 181; Plants - 143; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink). & (reliability: 304.0) & (original description: no original description) 0.8893580513565191 79 evm.model.tig00020903.45 no hits & (original description: no original description) 0.8892755666778089 80 evm.model.tig00000144.35 no hits & (original description: no original description) 0.88924976851357 81 evm.model.tig00020903.37 no hits & (original description: no original description) 0.8888997401831703 82 evm.model.tig00020510.41 (at2g06530 : 207.0) VPS2.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting-associated protein 2.3 (TAIR:AT1G03950.1); Has 2524 Blast hits to 2516 proteins in 271 species: Archae - 17; Bacteria - 20; Metazoa - 1106; Fungi - 512; Plants - 555; Viruses - 5; Other Eukaryotes - 309 (source: NCBI BLink). & (reliability: 414.0) & (original description: no original description) 0.8878493939855623 83 evm.model.tig00000704.30 (at2g15430 : 264.0) Non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, encoded by At2g15400, can substitute for At2g15430 in the context of Pol V.; NRPB3; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: in 6 components; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, 30-40kDa subunit, conserved site (InterPro:IPR001514), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein (TAIR:AT2G15400.1); Has 1362 Blast hits to 1362 proteins in 353 species: Archae - 243; Bacteria - 1; Metazoa - 278; Fungi - 347; Plants - 109; Viruses - 0; Other Eukaryotes - 384 (source: NCBI BLink). & (reliability: 528.0) & (original description: no original description) 0.8878443099976271 84 evm.model.tig00000076.92 no hits & (original description: no original description) 0.886413667546607 85 evm.model.tig00020904.76 no hits & (original description: no original description) 0.8862331457160304 87 evm.model.tig00020927.50 (at1g21190 : 115.0) Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT1G76860.1); Has 1267 Blast hits to 1267 proteins in 306 species: Archae - 319; Bacteria - 0; Metazoa - 370; Fungi - 215; Plants - 174; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink). & (reliability: 230.0) & (original description: no original description) 0.8859388955944133 88 evm.model.tig00020531.40 no hits & (original description: no original description) 0.8857202499142623 89 evm.model.tig00000042.106 (at2g45790 : 301.0) encodes a phosphomannomutase, involved in ascorbate biosynthesis; phosphomannomutase (PMM); FUNCTIONS IN: protein binding, phosphomannomutase activity; INVOLVED IN: L-ascorbic acid biosynthetic process, response to salt stress, mannose biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Eukaryotic phosphomannomutase (InterPro:IPR005002), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379); Has 1083 Blast hits to 1081 proteins in 282 species: Archae - 1; Bacteria - 92; Metazoa - 201; Fungi - 171; Plants - 223; Viruses - 0; Other Eukaryotes - 395 (source: NCBI BLink). & (reliability: 602.0) & (original description: no original description) 0.8853512531305361 90 evm.model.tig00020538.71 (at1g17440 : 110.0) Encodes one of two Arabidopsis proteins with similarity to the TBP-associated factor TAF12. The gene product is an EIN3-interacting TFIID transcription factor required for proper ethylene response, including ERF1 induction. Loss of function mutants show enhanced response to ethylene. Located in nucleus and expressed throughout the plant. Required for ERF1 expression.; ENHANCED ETHYLENE RESPONSE 4 (EER4); FUNCTIONS IN: DNA binding, transcription initiation factor activity; INVOLVED IN: regulation of ethylene mediated signaling pathway, jasmonic acid mediated signaling pathway, transcription initiation; LOCATED IN: nucleus, transcription factor TFIID complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID (InterPro:IPR003228), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: TBP-associated factor 12 (TAIR:AT3G10070.1); Has 83508 Blast hits to 36935 proteins in 1541 species: Archae - 40; Bacteria - 5554; Metazoa - 31214; Fungi - 9645; Plants - 6795; Viruses - 322; Other Eukaryotes - 29938 (source: NCBI BLink). & (reliability: 220.0) & (original description: no original description) 0.8853129201039929 91 evm.model.tig00000863.13 no hits & (original description: no original description) 0.884508561256938 92 evm.model.tig00000057.73 no hits & (original description: no original description) 0.8835772323808536 93 evm.model.tig00000802.14 no hits & (original description: no original description) 0.8833400609618165 94 evm.model.tig00000704.54 "(at4g14540 : 106.0) ""nuclear factor Y, subunit B3"" (NF-YB3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957), Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072), Transcription factor, NFYB/HAP3, conserved site (InterPro:IPR003956); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B2 (TAIR:AT5G47640.1); Has 1532 Blast hits to 1532 proteins in 250 species: Archae - 0; Bacteria - 1; Metazoa - 503; Fungi - 375; Plants - 529; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink). & (p25209|nfyb_maize : 105.0) Nuclear transcription factor Y subunit B (NF-YB) (CAAT-box DNA-binding protein subunit B) - Zea mays (Maize) & (reliability: 212.0) & (original description: no original description)" 0.8824358775367664 95 evm.model.tig00021319.66 (at5g56130 : 202.0) Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.; TEX1; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT5G67320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 404.0) & (original description: no original description) 0.8824219035942421 96 evm.model.tig00001542.23 "(at5g08190 : 140.0) ""nuclear factor Y, subunit B12"" (NF-YB12); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit B13 (TAIR:AT5G23090.4); Has 1494 Blast hits to 1494 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 489; Fungi - 378; Plants - 520; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). & (reliability: 280.0) & (original description: no original description)" 0.8812496956558759 97 evm.model.tig00000863.11 (p29620|kc47_orysa : 329.0) CDC2+/CDC28-related protein kinase R2 (EC 2.7.11.22) - Oryza sativa (Rice) & (at1g18040 : 317.0) cyclin-dependent kinase D1;3 (CDKD1;3); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase D1;1 (TAIR:AT1G73690.1); Has 119527 Blast hits to 118054 proteins in 4087 species: Archae - 74; Bacteria - 13556; Metazoa - 44153; Fungi - 12365; Plants - 29368; Viruses - 395; Other Eukaryotes - 19616 (source: NCBI BLink). & (reliability: 634.0) & (original description: no original description) 0.8806560060022772 98 evm.model.tig00020564.33 no hits & (original description: no original description) 0.880545708646229 99 evm.model.tig00000826.22 (q9lst7|psb3_orysa : 263.0) Proteasome subunit beta type 3 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit beta-3) - Oryza sativa (Rice) & (at1g21720 : 259.0) 20S proteasome beta subunit PBC1 truncated protein (PBC1); proteasome beta subunit C1 (PBC1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit C2 (TAIR:AT1G77440.2); Has 3309 Blast hits to 3309 proteins in 436 species: Archae - 498; Bacteria - 34; Metazoa - 1257; Fungi - 828; Plants - 282; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink). & (reliability: 518.0) & (original description: no original description) 0.8804653525391805 100