Sequence Description Alias PCC hrr evm.model.tig00020556.94 no hits & (original description: no original description) 0.9108759043405963 2 evm.model.tig00000754.8 (at1g16320 : 89.7) Uncharacterized conserved protein (DUF2358); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790); BEST Arabidopsis thaliana protein match is: Uncharacterized conserved protein (DUF2358) (TAIR:AT1G79510.2); Has 274 Blast hits to 274 proteins in 79 species: Archae - 0; Bacteria - 78; Metazoa - 80; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). & (reliability: 179.4) & (original description: no original description) 0.9078845367330913 10 evm.model.tig00000863.52 no hits & (original description: no original description) 0.8933045563518474 38 evm.model.tig00020904.91 (at4g11980 : 182.0) nudix hydrolase homolog 14 (NUDX14); FUNCTIONS IN: hydrolase activity, ADP-sugar diphosphatase activity, ADP-ribose pyrophosphohydrolase activity, ADP-glucose pyrophosphohydrolase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase domain (InterPro:IPR000086); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 364.0) & (original description: no original description) 0.8927177003399268 11 evm.model.tig00020912.25 no hits & (original description: no original description) 0.8885942591048319 33 evm.model.tig00000388.14 no hits & (original description: no original description) 0.872931788945013 37 evm.model.tig00000880.24 no hits & (original description: no original description) 0.8717405613342492 19 evm.model.tig00000254.114 (q6zl94|suca_orysa : 376.0) Probable succinyl-CoA ligase [GDP-forming] subunit alpha, mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase subunit alpha) (SCS-alpha) - Oryza sativa (Rice) & (at5g08300 : 360.0) Succinyl-CoA ligase, alpha subunit; FUNCTIONS IN: succinate-CoA ligase (GDP-forming) activity, copper ion binding, metal ion binding; INVOLVED IN: response to cadmium ion, metabolic process; LOCATED IN: mitochondrion, cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Succinyl-CoA ligase, alpha subunit (InterPro:IPR005810), ATP-citrate lyase/succinyl-CoA ligase (InterPro:IPR005811), NAD(P)-binding domain (InterPro:IPR016040), ATP-citrate lyase/succinyl-CoA ligase, active site (InterPro:IPR017440), CoA-binding (InterPro:IPR003781), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: Succinyl-CoA ligase, alpha subunit (TAIR:AT5G23250.1); Has 9706 Blast hits to 9705 proteins in 2093 species: Archae - 338; Bacteria - 4848; Metazoa - 444; Fungi - 287; Plants - 143; Viruses - 0; Other Eukaryotes - 3646 (source: NCBI BLink). & (reliability: 720.0) & (original description: no original description) 0.8709028130990638 90 evm.model.tig00000079.4 no hits & (original description: no original description) 0.8703190493234548 29 evm.model.tig00020614.44 no hits & (original description: no original description) 0.8675542629778734 27 evm.model.tig00000403.31 (at2g26280 : 114.0) smr (Small MutS Related) domain-containing protein mRNA, complete cds; CID7; FUNCTIONS IN: damaged DNA binding, protein binding, ATP binding; INVOLVED IN: mismatch repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Smr protein/MutS2 C-terminal (InterPro:IPR002625), Region of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: PRLI-interacting factor, putative (TAIR:AT5G58720.1); Has 309 Blast hits to 309 proteins in 103 species: Archae - 0; Bacteria - 0; Metazoa - 71; Fungi - 126; Plants - 79; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). & (reliability: 228.0) & (original description: no original description) 0.8664774129790471 16 evm.model.tig00001041.24 (at3g17880 : 94.0) Encodes a thioredoxin-like disulfide reductase. The protein interacts with the yeast Hsp70 protein Ssb2 in vitro. This interaction is sensitive to the redox status of the thioredoxin domain of AtTDX.; tetraticopeptide domain-containing thioredoxin (TDX); FUNCTIONS IN: protein binding, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Tetratricopeptide-like helical (InterPro:IPR011990), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Tetratricopeptide repeat-containing (InterPro:IPR013026), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: HSP70-interacting protein 1 (TAIR:AT4G22670.1); Has 25327 Blast hits to 23050 proteins in 2977 species: Archae - 386; Bacteria - 12482; Metazoa - 3860; Fungi - 1433; Plants - 2443; Viruses - 7; Other Eukaryotes - 4716 (source: NCBI BLink). & (p80028|trxh_chlre : 88.6) Thioredoxin H-type (TRX-H) (Thioredoxin CH1) - Chlamydomonas reinhardtii & (reliability: 188.0) & (original description: no original description) 0.8654383732108031 56 evm.model.tig00000254.82 (at1g63120 : 87.0) AtRBL2 has been identified as a rhomboid protein involved in regulated intramembrane proteolysis (RIP). The enzyme has the proteolytic activity and substrate specificity comparable to the Drosophila Rho-1 protein.; RHOMBOID-like 2 (RBL2); CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 6 (TAIR:AT1G12750.3); Has 6856 Blast hits to 6855 proteins in 1947 species: Archae - 152; Bacteria - 4411; Metazoa - 521; Fungi - 179; Plants - 374; Viruses - 0; Other Eukaryotes - 1219 (source: NCBI BLink). & (reliability: 174.0) & (original description: no original description) 0.8605217039633006 51 evm.model.tig00000551.8 no hits & (original description: no original description) 0.858396633307082 91 evm.model.tig00020961.99 no hits & (original description: no original description) 0.8570218906716771 60 evm.model.tig00021036.52 no hits & (original description: no original description) 0.8568192279968596 20 evm.model.tig00020903.59 no hits & (original description: no original description) 0.8556811537881538 21 evm.model.tig00001130.9 (q6z808|rac3_orysa : 145.0) Rac-like GTP-binding protein 3 (OsRac3) - Oryza sativa (Rice) & (at2g44690 : 144.0) A member of ROP GTPase gene family.; Arabidopsis RAC-like 9 (ARAC9); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Ras small GTPase, Rab type (InterPro:IPR003579), Ras (InterPro:IPR013753), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: RAC-like 3 (TAIR:AT4G35020.3); Has 24763 Blast hits to 24736 proteins in 683 species: Archae - 8; Bacteria - 73; Metazoa - 12794; Fungi - 3855; Plants - 2697; Viruses - 20; Other Eukaryotes - 5316 (source: NCBI BLink). & (reliability: 288.0) & (original description: no original description) 0.8555093727443644 36 evm.model.tig00021518.4 (p26356|tbp1_wheat : 221.0) TATA-box-binding protein 1 (TATA-box factor 1) (TATA-binding factor 1) (TATA sequence-binding protein 1) (TBP-1) (Transcription initiation factor TFIID TBP-1 subunit) - Triticum aestivum (Wheat) & (at3g13445 : 213.0) TBP (TATA binding protein) associates with TAF(II)s (TBP-associated factors) to form the TFIID general transcription factor complex; TATA binding protein 1 (TBP1); FUNCTIONS IN: RNA polymerase II transcription factor activity, binding, DNA binding; INVOLVED IN: transcription initiation from RNA polymerase II promoter, regulation of transcription, DNA-dependent; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TATA-box binding (InterPro:IPR000814), Beta2-adaptin/TATA-box binding, C-terminal (InterPro:IPR012295), Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal (InterPro:IPR012294); BEST Arabidopsis thaliana protein match is: TATA binding protein 2 (TAIR:AT1G55520.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 426.0) & (original description: no original description) 0.850129488747762 99 evm.model.tig00021318.65 no hits & (original description: no original description) 0.8492785783347869 94 evm.model.tig00021070.108 (at2g38710 : 185.0) AMMECR1 family; INVOLVED IN: response to salt stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AMMECR1 (InterPro:IPR002733); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 370.0) & (original description: no original description) 0.8479138204506635 87 evm.model.tig00020816.26 no hits & (original description: no original description) 0.8430166535686521 56 evm.model.tig00020554.141 no hits & (original description: no original description) 0.8411049227809614 53 evm.model.tig00020961.83 (at1g18450 : 353.0) Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct, 3' UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression, and resulted in strong pleiotropic phenotypes such as altered organization of plant organs, early flowering, delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes.; actin-related protein 4 (ARP4); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: long-day photoperiodism, flowering, chromatin organization, pollen sperm cell differentiation; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin-11 (TAIR:AT3G12110.1); Has 13669 Blast hits to 13362 proteins in 2792 species: Archae - 2; Bacteria - 480; Metazoa - 5593; Fungi - 3430; Plants - 1457; Viruses - 2; Other Eukaryotes - 2705 (source: NCBI BLink). & (p17299|act3_orysa : 238.0) Actin-3 - Oryza sativa (Rice) & (reliability: 706.0) & (original description: no original description) 0.8376262484956796 55 evm.model.tig00000545.15 no hits & (original description: no original description) 0.8372294219738614 94 evm.model.tig00000478.39 no hits & (original description: no original description) 0.8345801021675747 71 evm.model.tig00001636.9 (at2g29960 : 249.0) encodes a cyclophilin protein that exhibits peptidylprolyl cis/trans-isomerase and protein refolding activities that were sensitive to cyclosporin A. The protein interacts with GNOM in vitro and is localized to both the cytosolic and membrane fractions. The gene is expressed in the developing embryo.; cyclophilin 5 (CYP5); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: cytosol, Golgi stack, endoplasmic reticulum, membrane fraction, multivesicular body; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 7 (TAIR:AT5G58710.1); Has 15750 Blast hits to 15712 proteins in 2648 species: Archae - 109; Bacteria - 6497; Metazoa - 2918; Fungi - 1356; Plants - 1258; Viruses - 4; Other Eukaryotes - 3608 (source: NCBI BLink). & (q39613|cyph_catro : 210.0) Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-binding protein) - Catharanthus roseus (Rosy periwinkle) (Madagascar periwinkle) & (reliability: 498.0) & (original description: no original description) 0.8334003167867904 93 evm.model.tig00020934.51 no hits & (original description: no original description) 0.8324684692971461 97 evm.model.tig00001067.17 no hits & (original description: no original description) 0.8284158441567313 75 evm.model.tig00000792.55 no hits & (original description: no original description) 0.8241548890632536 63 evm.model.tig00001408.3 no hits & (original description: no original description) 0.8216142460444058 66 evm.model.tig00021590.5 no hits & (original description: no original description) 0.8215136319604703 67 evm.model.tig00021332.8 no hits & (original description: no original description) 0.8193921467935111 70 evm.model.tig00021127.60 no hits & (original description: no original description) 0.8160736622230712 77 evm.model.tig00000248.19 (at1g76140 : 107.0) Prolyl oligopeptidase family protein; FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375), Peptidase S9A, oligopeptidase, N-terminal beta-propeller (InterPro:IPR004106), Peptidase S9A, prolyl oligopeptidase (InterPro:IPR002470); BEST Arabidopsis thaliana protein match is: Prolyl oligopeptidase family protein (TAIR:AT1G20380.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 214.0) & (original description: no original description) 0.815864317056232 79 evm.model.tig00000889.4 no hits & (original description: no original description) 0.8126322892432888 95 evm.model.tig00021494.9 no hits & (original description: no original description) 0.8123545487044112 87 evm.model.tig00000093.52 no hits & (original description: no original description) 0.811667083095446 90 evm.model.tig00020560.14 no hits & (original description: no original description) 0.8085956827624151 96 evm.model.tig00020554.79 (at4g39910 : 131.0) Encodes a nuclear ubiquitin-specific protease.; ubiquitin-specific protease 3 (UBP3); CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 4 (TAIR:AT2G22310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 262.0) & (original description: no original description) 0.8083756186294866 97