Sequence Description Alias PCC hrr evm.model.tig00020553.195 no hits & (original description: no original description) 0.945671751207873 1 evm.model.tig00020592.44 (at1g65950 : 218.0) Protein kinase superfamily protein; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ABC2 homolog 9 (TAIR:AT2G40090.1); Has 9535 Blast hits to 9504 proteins in 1790 species: Archae - 124; Bacteria - 4369; Metazoa - 419; Fungi - 493; Plants - 742; Viruses - 14; Other Eukaryotes - 3374 (source: NCBI BLink). & (reliability: 436.0) & (original description: no original description) 0.9432137127141006 10 evm.model.tig00020610.103 no hits & (original description: no original description) 0.9378234022996734 14 evm.model.tig00000718.2 (at2g34660 : 171.0) encodes a multidrug resistance-associated protein that is MgATP-energized glutathione S-conjugate pump. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.; multidrug resistance-associated protein 2 (MRP2); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 1 (TAIR:AT1G30400.2). & (reliability: 342.0) & (original description: no original description) 0.9326730130056929 7 evm.model.tig00001376.11 (at5g54290 : 132.0) Encodes CcdA, a thylakoid membrane protein required for the transfer of reducing equivalents from stroma to thylakoid lumen.; CcdA; CONTAINS InterPro DOMAIN/s: Cytochrome c assembly protein, transmembrane domain (InterPro:IPR003834). & (reliability: 264.0) & (original description: no original description) 0.9321369014680566 20 evm.model.tig00021569.2 (at3g14420 : 298.0) Aldolase-type TIM barrel family protein; FUNCTIONS IN: glycolate oxidase activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: apoplast, chloroplast, peroxisome, membrane; EXPRESSED IN: cotyledon, guard cell, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), FMN-dependent alpha-hydroxy acid dehydrogenase, active site (InterPro:IPR008259), FMN-dependent dehydrogenase (InterPro:IPR000262), Alpha-hydroxy acid dehydrogenase, FMN-dependent (InterPro:IPR012133); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G14415.3); Has 11354 Blast hits to 11340 proteins in 1837 species: Archae - 148; Bacteria - 5331; Metazoa - 369; Fungi - 687; Plants - 262; Viruses - 0; Other Eukaryotes - 4557 (source: NCBI BLink). & (p05414|gox_spiol : 289.0) Peroxisomal (S)-2-hydroxy-acid oxidase (EC 1.1.3.15) (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy acid oxidase) - Spinacia oleracea (Spinach) & (reliability: 596.0) & (original description: no original description) 0.9298688729917727 19 evm.model.tig00000489.19 no hits & (original description: no original description) 0.9278613987927182 11 evm.model.tig00000378.18 no hits & (original description: no original description) 0.9278091581510807 13 evm.model.tig00000863.47 (at3g50790 : 102.0) esterase/lipase/thioesterase family protein; FUNCTIONS IN: hydrolase activity, carboxylesterase activity; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0017, hydrolase-like, conserved site (InterPro:IPR000952), AB-hydrolase YheT, putative (InterPro:IPR012020), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G49950.1); Has 2554 Blast hits to 2547 proteins in 951 species: Archae - 0; Bacteria - 1494; Metazoa - 334; Fungi - 200; Plants - 135; Viruses - 0; Other Eukaryotes - 391 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description) 0.9262988476039027 25 evm.model.tig00021037.8 (at4g39970 : 150.0) Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT3G48420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 300.0) & (original description: no original description) 0.92357698245173 26 evm.model.tig00000808.38 (at4g27270 : 149.0) Quinone reductase family protein; FUNCTIONS IN: oxidoreductase activity, FMN binding; INVOLVED IN: negative regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Flavoprotein WrbA (InterPro:IPR010089), NADPH-dependent FMN reductase (InterPro:IPR005025), Flavodoxin/nitric oxide synthase (InterPro:IPR008254); BEST Arabidopsis thaliana protein match is: flavodoxin-like quinone reductase 1 (TAIR:AT5G54500.1); Has 3487 Blast hits to 3484 proteins in 1099 species: Archae - 83; Bacteria - 2629; Metazoa - 2; Fungi - 274; Plants - 205; Viruses - 1; Other Eukaryotes - 293 (source: NCBI BLink). & (reliability: 298.0) & (original description: no original description) 0.9230239876292625 40 evm.model.tig00000622.21 (at3g08010 : 86.7) Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the biogenesis of Photosystem I and II. ATAB2 has A/U-rich RNA-binding activity and presumably functions as an activator of translation with targets at PS I and PS II.; ATAB2; FUNCTIONS IN: RNA binding; INVOLVED IN: de-etiolation, chloroplast organization, translation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1092 (InterPro:IPR009472); Has 382 Blast hits to 382 proteins in 92 species: Archae - 0; Bacteria - 177; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink). & (reliability: 173.4) & (original description: no original description) 0.922864692477132 31 evm.model.tig00001071.14 (at3g63520 : 102.0) Encodes a protein with 9-<i>cis</i>-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including &#946;-carotene, lutein, zeaxanthin, and all-<i>trans</i>-violaxanthin. When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial. The enzyme did not cleave as efficiently carotenoids containing 9-<i>cis</i>-double or allenic bonds.; carotenoid cleavage dioxygenase 1 (CCD1); FUNCTIONS IN: 9-cis-epoxycarotenoid dioxygenase activity; INVOLVED IN: response to water deprivation, carotene catabolic process, xanthophyll catabolic process, carotenoid catabolic process; LOCATED IN: plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 4 (TAIR:AT4G19170.1); Has 2926 Blast hits to 2896 proteins in 500 species: Archae - 16; Bacteria - 808; Metazoa - 317; Fungi - 194; Plants - 866; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description) 0.9208200834933998 33 evm.model.tig00001126.5 no hits & (original description: no original description) 0.920229525354573 66 evm.model.tig00000403.95 "(at1g31800 : 91.3) Encodes a protein with &#946;-ring carotenoid hydroxylase activity.; ""cytochrome P450, family 97, subfamily A, polypeptide 3"" (CYP97A3); FUNCTIONS IN: carotene beta-ring hydroxylase activity, oxygen binding; INVOLVED IN: carotenoid biosynthetic process, xanthophyll biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: Cytochrome P450 superfamily protein (TAIR:AT3G53130.1); Has 33118 Blast hits to 32966 proteins in 1677 species: Archae - 61; Bacteria - 4341; Metazoa - 11636; Fungi - 7136; Plants - 8575; Viruses - 3; Other Eukaryotes - 1366 (source: NCBI BLink). & (o48921|c97b2_soybn : 85.5) Cytochrome P450 97B2 (EC 1.14.-.-) - Glycine max (Soybean) & (reliability: 182.6) & (original description: no original description)" 0.9180907005883476 33 evm.model.tig00020610.104 (at3g07020 : 136.0) UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: lipid glycosylation, carbohydrate metabolic process, metabolic process; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 28 (InterPro:IPR004276), UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G43620.3); Has 2464 Blast hits to 2426 proteins in 636 species: Archae - 0; Bacteria - 1528; Metazoa - 298; Fungi - 386; Plants - 152; Viruses - 3; Other Eukaryotes - 97 (source: NCBI BLink). & (reliability: 272.0) & (original description: no original description) 0.9173996260904103 27 evm.model.tig00021127.194 no hits & (original description: no original description) 0.9173890016127252 17 evm.model.tig00020961.93 no hits & (original description: no original description) 0.9165544250188157 19 evm.model.tig00000227.54 no hits & (original description: no original description) 0.9141464992261802 58 evm.model.tig00020830.32 (at2g01110 : 206.0) mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein.; ALBINO AND PALE GREEN 2 (APG2); FUNCTIONS IN: proton motive force dependent protein transmembrane transporter activity; INVOLVED IN: thylakoid membrane organization, double fertilization forming a zygote and endosperm; LOCATED IN: chloroplast thylakoid membrane, receptor complex, chloroplast, integral to thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec-independent periplasmic protein translocase (InterPro:IPR002033), Sec-independent periplasmic protein translocase, conserved site (InterPro:IPR019820), Twin arginine-targeting protein translocase, TatC (InterPro:IPR019822); Has 5953 Blast hits to 5918 proteins in 1859 species: Archae - 177; Bacteria - 3492; Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2203 (source: NCBI BLink). & (reliability: 412.0) & (original description: no original description) 0.9118574334080067 20 evm.model.tig00000658.25 (original description: no original description) 0.9106319068347125 27 evm.model.tig00000849.28 no hits & (original description: no original description) 0.9101478436815803 53 evm.model.tig00000615.41 no hits & (original description: no original description) 0.9096509208894048 53 evm.model.tig00020614.73 no hits & (original description: no original description) 0.9095837331781953 94 evm.model.tig00000718.3 (at3g13090 : 182.0) member of MRP subfamily; multidrug resistance-associated protein 8 (MRP8); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 7 (TAIR:AT3G13100.1); Has 618731 Blast hits to 341231 proteins in 4024 species: Archae - 11229; Bacteria - 503340; Metazoa - 11410; Fungi - 6818; Plants - 5765; Viruses - 13; Other Eukaryotes - 80156 (source: NCBI BLink). & (q6yuu5|mdr_orysa : 89.7) Putative multidrug resistance protein (P-glycoprotein) - Oryza sativa (Rice) & (reliability: 364.0) & (original description: no original description) 0.909497121985021 25 evm.model.tig00000144.28 (at3g24190 : 353.0) Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, catalytic domain (InterPro:IPR000719), Aminoglycoside phosphotransferase (InterPro:IPR002575), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G79600.1); Has 10148 Blast hits to 10096 proteins in 1818 species: Archae - 124; Bacteria - 4457; Metazoa - 440; Fungi - 485; Plants - 717; Viruses - 16; Other Eukaryotes - 3909 (source: NCBI BLink). & (reliability: 706.0) & (original description: no original description) 0.9093185575010598 85 evm.model.tig00020610.107 no hits & (original description: no original description) 0.909291607953823 43 evm.model.tig00020538.32 no hits & (original description: no original description) 0.9092746373162927 37 evm.model.tig00000403.33 no hits & (original description: no original description) 0.9083618713518868 58 evm.model.tig00000663.54 (at1g73990 : 158.0) Encodes a putative protease SppA (SppA).; signal peptide peptidase (SPPA); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis, response to light intensity; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S49, protease IV (InterPro:IPR004634), Peptidase S49 (InterPro:IPR002142), Peptidase S49, SppA (InterPro:IPR004635); Has 9340 Blast hits to 7649 proteins in 1706 species: Archae - 204; Bacteria - 6183; Metazoa - 9; Fungi - 4; Plants - 52; Viruses - 43; Other Eukaryotes - 2845 (source: NCBI BLink). & (reliability: 316.0) & (original description: no original description) 0.9076898275972717 44 evm.model.tig00000737.24 no hits & (original description: no original description) 0.9063038177953768 70 evm.model.tig00020660.34 no hits & (original description: no original description) 0.9057695050780215 33 evm.model.tig00020556.13 no hits & (original description: no original description) 0.9051119150242946 77 evm.model.tig00000248.16 no hits & (original description: no original description) 0.9033565647023316 78 evm.model.tig00001229.8 no hits & (original description: no original description) 0.9033543118573998 41 evm.model.tig00021318.33 no hits & (original description: no original description) 0.903227796702423 84 evm.model.tig00000507.23 (at2g27680 : 209.0) NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity, aldo-keto reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); BEST Arabidopsis thaliana protein match is: NAD(P)-linked oxidoreductase superfamily protein (TAIR:AT1G06690.1); Has 12729 Blast hits to 12722 proteins in 1987 species: Archae - 303; Bacteria - 10047; Metazoa - 110; Fungi - 525; Plants - 450; Viruses - 0; Other Eukaryotes - 1294 (source: NCBI BLink). & (reliability: 418.0) & (original description: no original description) 0.9021871628285502 37 evm.model.tig00021318.57 (at2g04940 : 114.0) scramblase-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Scramblase (InterPro:IPR005552); Has 427 Blast hits to 416 proteins in 142 species: Archae - 0; Bacteria - 29; Metazoa - 228; Fungi - 113; Plants - 38; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). & (reliability: 228.0) & (original description: no original description) 0.9013438443120343 38 evm.model.tig00000219.42 no hits & (original description: no original description) 0.9010733386153492 63 evm.model.tig00021179.40 (at2g44990 : 100.0) More Axillary Branching; carotenoid cleavage dioxygenases.; carotenoid cleavage dioxygenase 7 (CCD7); CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 6 (TAIR:AT3G24220.1); Has 211 Blast hits to 206 proteins in 62 species: Archae - 2; Bacteria - 69; Metazoa - 8; Fungi - 31; Plants - 96; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). & (reliability: 200.0) & (original description: no original description) 0.9009426122571709 88 evm.model.tig00000073.19 (q9zrf1|mtdh_fraan : 209.0) Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) - Fragaria ananassa (Strawberry) & (at4g37970 : 205.0) cinnamyl alcohol dehydrogenase 6 (CAD6); FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: cinnamyl alcohol dehydrogenase 9 (TAIR:AT4G39330.1); Has 35385 Blast hits to 35371 proteins in 2946 species: Archae - 789; Bacteria - 23408; Metazoa - 1218; Fungi - 2700; Plants - 2633; Viruses - 3; Other Eukaryotes - 4634 (source: NCBI BLink). & (reliability: 410.0) & (original description: no original description) 0.9007192906423024 41 evm.model.tig00000989.46 no hits & (original description: no original description) 0.9006934850915845 60 evm.model.tig00021318.63 (at5g63860 : 116.0) UV-B-specific signaling component that orchestrates expression of a range of genes with vital UV-protective functions. Located in the nucleus and the cytosol. Associates with chromatin via histones. UV-B light promotes URV8 protein accumulation in the nucleus.; UVB-RESISTANCE 8 (UVR8); FUNCTIONS IN: chromatin binding, guanyl-nucleotide exchange factor activity; INVOLVED IN: response to UV, response to UV-B; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G12350.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 232.0) & (original description: no original description) 0.9002123393554566 43 evm.model.tig00000241.18 no hits & (original description: no original description) 0.9001980009538564 44 evm.model.tig00000718.36 no hits & (original description: no original description) 0.8997034799217936 45 evm.model.tig00021127.131 (at1g50450 : 201.0) Saccharopine dehydrogenase ; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Saccharopine dehydrogenase / Homospermidine synthase (InterPro:IPR005097), NAD(P)-binding domain (InterPro:IPR016040); Has 1549 Blast hits to 1547 proteins in 500 species: Archae - 22; Bacteria - 980; Metazoa - 33; Fungi - 88; Plants - 49; Viruses - 0; Other Eukaryotes - 377 (source: NCBI BLink). & (reliability: 402.0) & (original description: no original description) 0.8996345398971064 99 evm.model.tig00000870.34 (q8h9d2|nqr_soltu : 125.0) NAD(P)H:quinone oxidoreductase (EC 1.6.5.2) (NAD(P)H:QR) - Solanum tuberosum (Potato) & (at3g27890 : 115.0) Encodes NAD(P)H:quinone reductase which is an FMN binding protein that catalyzes the reduction of quinone substrates to hydroquinones.The enzyme activity was confirmed by in vitro assay.; NADPH:quinone oxidoreductase (NQR); FUNCTIONS IN: FMN reductase activity; INVOLVED IN: response to salt stress, defense response to bacterium; LOCATED IN: chloroplast stroma, chloroplast, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NADPH-dependent FMN reductase (InterPro:IPR005025); Has 4868 Blast hits to 4868 proteins in 1478 species: Archae - 69; Bacteria - 4415; Metazoa - 6; Fungi - 46; Plants - 72; Viruses - 0; Other Eukaryotes - 260 (source: NCBI BLink). & (reliability: 230.0) & (original description: no original description) 0.8995837288936418 47 evm.model.tig00020538.64 (at1g22850 : 145.0) SNARE associated Golgi protein family; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SNARE associated Golgi protein (InterPro:IPR015414); BEST Arabidopsis thaliana protein match is: SNARE associated Golgi protein family (TAIR:AT1G03260.1); Has 4604 Blast hits to 4604 proteins in 1169 species: Archae - 23; Bacteria - 2889; Metazoa - 197; Fungi - 87; Plants - 283; Viruses - 0; Other Eukaryotes - 1125 (source: NCBI BLink). & (reliability: 290.0) & (original description: no original description) 0.8984797959649823 48 evm.model.tig00000441.30 no hits & (original description: no original description) 0.8979485306159645 60 evm.model.tig00021463.12 no hits & (original description: no original description) 0.8972933738886419 50 evm.model.tig00021318.25 (at4g09620 : 98.6) Mitochondrial transcription termination factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochodrial transcription termination factor-related (InterPro:IPR003690); Has 234 Blast hits to 198 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). & (reliability: 197.2) & (original description: no original description) 0.8971012879033218 70 evm.model.tig00000880.22 (at5g66120 : 98.6) 3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 197.2) & (original description: no original description) 0.8909601394821637 52 evm.model.tig00001629.4 (at1g10830 : 258.0) Encodes a variant protein of the 15-cis-zeta-carotene isomase (Z-ISO) locus lacking Z-ISO activity.; 15-cis-zeta-carotene isomerase (Z-ISO); FUNCTIONS IN: 9,15,9'-tri-cis-zeta-carotene isomerase activity; INVOLVED IN: carotene biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NnrU (InterPro:IPR009915); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 516.0) & (original description: no original description) 0.8900706696737297 56 evm.model.tig00020941.46 (at1g14345 : 91.3) NAD(P)-linked oxidoreductase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldo/keto reductase (InterPro:IPR001395); Has 297 Blast hits to 297 proteins in 86 species: Archae - 0; Bacteria - 121; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink). & (reliability: 182.6) & (original description: no original description) 0.8896906287157282 89 evm.model.tig00000806.35 (at1g17100 : 90.5) SOUL heme-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT1G78450.1); Has 1318 Blast hits to 1294 proteins in 131 species: Archae - 15; Bacteria - 114; Metazoa - 250; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink). & (reliability: 181.0) & (original description: no original description) 0.8893969217236115 58 evm.model.tig00020909.30 no hits & (original description: no original description) 0.8890890002286187 93 evm.model.tig00000718.1 (at2g34660 : 358.0) encodes a multidrug resistance-associated protein that is MgATP-energized glutathione S-conjugate pump. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim.; multidrug resistance-associated protein 2 (MRP2); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: multidrug resistance-associated protein 1 (TAIR:AT1G30400.2). & (reliability: 716.0) & (original description: no original description) 0.8885691786059452 60 evm.model.tig00021489.14 (at2g37660 : 95.9) NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: copper ion binding; INVOLVED IN: defense response to bacterium; LOCATED IN: thylakoid, apoplast, chloroplast stroma, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 3-beta hydroxysteroid dehydrogenase/isomerase (InterPro:IPR002225), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G02240.1); Has 2691 Blast hits to 2647 proteins in 745 species: Archae - 56; Bacteria - 1822; Metazoa - 3; Fungi - 41; Plants - 459; Viruses - 0; Other Eukaryotes - 310 (source: NCBI BLink). & (reliability: 190.2) & (original description: no original description) 0.8878879726641498 64 evm.model.tig00000241.142 (o24163|ppoc_tobac : 218.0) Protoporphyrinogen oxidase, chloroplast precursor (EC 1.3.3.4) (PPO I) (Protoporphyrinogen IX oxidase isozyme I) (PPX I) - Nicotiana tabacum (Common tobacco) & (at4g01690 : 217.0) Encodes protoporphyrinogen oxidase (PPOX).; PPOX; FUNCTIONS IN: oxygen-dependent protoporphyrinogen oxidase activity; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Protoporphyrinogen oxidase (InterPro:IPR004572); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family (TAIR:AT5G14220.1); Has 2189 Blast hits to 2187 proteins in 783 species: Archae - 6; Bacteria - 1392; Metazoa - 195; Fungi - 135; Plants - 152; Viruses - 0; Other Eukaryotes - 309 (source: NCBI BLink). & (reliability: 434.0) & (original description: no original description) 0.8876172388898039 63 evm.model.tig00000133.48 (at1g13820 : 128.0) alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G39220.1); Has 7432 Blast hits to 7419 proteins in 1219 species: Archae - 99; Bacteria - 5035; Metazoa - 262; Fungi - 72; Plants - 574; Viruses - 0; Other Eukaryotes - 1390 (source: NCBI BLink). & (reliability: 256.0) & (original description: no original description) 0.8870853056018676 65 evm.model.tig00000796.16 no hits & (original description: no original description) 0.8856398771868234 78 evm.model.tig00000944.16 (at5g50250 : 101.0) Encodes a RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Supports editing of specific CP31A-dependent sites.; chloroplast RNA-binding protein 31B (CP31B); FUNCTIONS IN: RNA binding, poly(U) RNA binding; INVOLVED IN: RNA modification, innate immune response; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: 31-kDa RNA binding protein (TAIR:AT4G24770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p28644|roc1_spiol : 93.2) 28 kDa ribonucleoprotein, chloroplast (28RNP) - Spinacia oleracea (Spinach) & (reliability: 202.0) & (original description: no original description) 0.8843111858865846 86 evm.model.tig00001086.15 no hits & (original description: no original description) 0.8829850317245088 73 evm.model.tig00021493.27 (at2g41040 : 121.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: response to karrikin; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G78140.1); Has 8121 Blast hits to 8118 proteins in 1828 species: Archae - 365; Bacteria - 6420; Metazoa - 92; Fungi - 271; Plants - 324; Viruses - 0; Other Eukaryotes - 649 (source: NCBI BLink). & (reliability: 242.0) & (original description: no original description) 0.8820624531727175 74 evm.model.tig00020801.37 (at1g16540 : 335.0) Encodes molybdenum cofactor sulfurase. Involved in Moco biosynthesis. Involved in the conversion of ABA-aldehyde to ABA, the last step of abscisic acid (ABA) biosynthesis. <i>sir</i> loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling.N terminal domain is similar to bacterial NifS suggesting a common mechanism for sulphur mobilization and transfer. Also involved in protein import into chloroplasts.; ABA DEFICIENT 3 (ABA3); CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), MOSC, N-terminal beta barrel (InterPro:IPR005303), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Molybdenum cofactor sulfurase, C-terminal (InterPro:IPR005302), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Molybdenum cofactor sulfurase family protein (TAIR:AT1G30910.1); Has 7940 Blast hits to 7904 proteins in 1914 species: Archae - 94; Bacteria - 5396; Metazoa - 390; Fungi - 394; Plants - 292; Viruses - 1; Other Eukaryotes - 1373 (source: NCBI BLink). & (q655r6|mocos_orysa : 273.0) Molybdenum cofactor sulfurase (EC 4.4.-.-) (MoCo sulfurase) (MOS) - Oryza sativa (Rice) & (reliability: 670.0) & (original description: no original description) 0.8797008949595049 78 evm.model.tig00000142.17 no hits & (original description: no original description) 0.879605348483536 79 evm.model.tig00000882.20 no hits & (original description: no original description) 0.8785226489577238 80 evm.model.tig00000704.23 (at1g50250 : 325.0) encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes.; FTSH protease 1 (FTSH1); FUNCTIONS IN: metallopeptidase activity, protein binding, ATP-dependent peptidase activity, ATPase activity; INVOLVED IN: photosystem II repair, PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid lumen, chloroplast thylakoid membrane, chloroplast, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT5G42270.1); Has 39789 Blast hits to 37355 proteins in 3308 species: Archae - 1512; Bacteria - 16133; Metazoa - 4957; Fungi - 3666; Plants - 3305; Viruses - 34; Other Eukaryotes - 10182 (source: NCBI BLink). & (q9bae0|ftsh_medsa : 323.0) Cell division protease ftsH homolog, chloroplast precursor (EC 3.4.24.-) - Medicago sativa (Alfalfa) & (reliability: 650.0) & (original description: no original description) 0.8784732710410739 81 evm.model.tig00001215.20 no hits & (original description: no original description) 0.8782041983097358 82 evm.model.tig00020816.44 (q8s0j7|im30_orysa : 191.0) Probable membrane-associated 30 kDa protein, chloroplast precursor - Oryza sativa (Rice) & (at1g65260 : 182.0) Encodes a protein required for thylakoid membrane formation.; plastid transcriptionally active 4 (PTAC4); INVOLVED IN: vesicle organization, thylakoid membrane organization; LOCATED IN: in 8 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PspA/IM30 (InterPro:IPR007157); Has 3123 Blast hits to 3108 proteins in 1139 species: Archae - 38; Bacteria - 2412; Metazoa - 160; Fungi - 68; Plants - 89; Viruses - 95; Other Eukaryotes - 261 (source: NCBI BLink). & (reliability: 364.0) & (original description: no original description) 0.8779784669557702 83 evm.model.tig00000605.31 no hits & (original description: no original description) 0.8773526749494414 84 evm.model.tig00000692.83 no hits & (original description: no original description) 0.8773367752296157 85 evm.model.tig00021314.19 no hits & (original description: no original description) 0.8756728791000413 87 evm.model.tig00001299.9 no hits & (original description: no original description) 0.8752791494736293 88 evm.model.tig00000430.41 (at1g15710 : 243.0) prephenate dehydrogenase family protein; FUNCTIONS IN: prephenate dehydrogenase (NADP+) activity; INVOLVED IN: tyrosine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prephenate dehydrogenase (InterPro:IPR003099), Arogenate/prephenate dehydrogenase (InterPro:IPR012070); BEST Arabidopsis thaliana protein match is: arogenate dehydrogenase (TAIR:AT5G34930.1); Has 919 Blast hits to 907 proteins in 395 species: Archae - 81; Bacteria - 505; Metazoa - 3; Fungi - 100; Plants - 115; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink). & (reliability: 458.0) & (original description: no original description) 0.875256652540965 89 evm.model.tig00001525.2 no hits & (original description: no original description) 0.8741371163928658 91 evm.model.tig00000042.76 (p55142|glrx_orysa : 81.3) Glutaredoxin - Oryza sativa (Rice) & (at5g63030 : 80.9) Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity; INVOLVED IN: N-terminal protein myristoylation, cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Glutaredoxin, eukaryotic/virial (InterPro:IPR011899), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutaredoxin family protein (TAIR:AT5G40370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 161.8) & (original description: no original description) 0.8739218501275623 92 evm.model.tig00000404.56 (at1g79600 : 272.0) Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast, plastoglobule; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase, catalytic domain (InterPro:IPR000719), Aminoglycoside phosphotransferase (InterPro:IPR002575), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G71810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 544.0) & (original description: no original description) 0.8733891249378296 100 evm.model.tig00020553.186 no hits & (original description: no original description) 0.8731901117143187 95 evm.model.tig00000980.32 no hits & (original description: no original description) 0.873066900055039 96 evm.model.tig00000076.24 (at4g26500 : 167.0) Sulfur acceptor that interacts with and activates the cysteine desulfurases, AtSufS in plastids and AtNifS1 in mitochondria, and both activations are vital during embryogenesis. Dual localization in mitochondria and chloroplasts. Involved in Fe-S cluster biogenesis in mitochondria and plastids. Expressed in all major tissues, with higher expression in green parts. Its expression is light-dependent and regulated at the mRNA level. Activates the cysteine desulfurase activity of CpNifS for chloroplastic iron-sulfur cluster biogenesis.; chloroplast sulfur E (CPSUFE); FUNCTIONS IN: enzyme activator activity, transcription regulator activity; INVOLVED IN: iron-sulfur cluster assembly, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fe-S metabolism associated SufE (InterPro:IPR003808), BolA-like protein (InterPro:IPR002634); BEST Arabidopsis thaliana protein match is: BolA-like family protein (TAIR:AT1G55805.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 334.0) & (original description: no original description) 0.8729663889874041 97 evm.model.tig00021616.18 no hits & (original description: no original description) 0.8729068755119604 98 evm.model.tig00000692.39 (at3g08910 : 88.2) DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT5G01390.1); Has 28100 Blast hits to 27785 proteins in 3479 species: Archae - 185; Bacteria - 10426; Metazoa - 4606; Fungi - 2650; Plants - 2881; Viruses - 19; Other Eukaryotes - 7333 (source: NCBI BLink). & (reliability: 176.4) & (original description: no original description) 0.8727732820424147 100