Sequence Description Alias PCC hrr evm.model.tig00020554.159 no hits & (original description: no original description) 0.9584937812601233 4 evm.model.tig00001130.11 no hits & (original description: no original description) 0.9500170119808248 7 evm.model.tig00021580.2 (at5g45380 : 340.0) DEGRADATION OF UREA 3 (DUR3); CONTAINS InterPro DOMAIN/s: Sodium/solute symporter, subgroup (InterPro:IPR019900), Sodium/solute symporter (InterPro:IPR001734); Has 9388 Blast hits to 9377 proteins in 1702 species: Archae - 173; Bacteria - 6389; Metazoa - 719; Fungi - 340; Plants - 51; Viruses - 0; Other Eukaryotes - 1716 (source: NCBI BLink). & (reliability: 680.0) & (original description: no original description) 0.938399912356415 22 evm.model.tig00000863.36 no hits & (original description: no original description) 0.9367991209795657 29 evm.model.tig00000383.96 (at2g32000 : 420.0) DNA topoisomerase, type IA, core; FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding; INVOLVED IN: DNA topological change, DNA unwinding involved in replication, DNA metabolic process; LOCATED IN: endomembrane system, chromosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Toprim domain, subgroup (InterPro:IPR006154), DNA topoisomerase, type IA, central region, subdomain 1 (InterPro:IPR013824), DNA topoisomerase, type IA, core (InterPro:IPR000380), Toprim domain (InterPro:IPR006171), DNA topoisomerase, type IA, DNA-binding (InterPro:IPR003602), DNA topoisomerase, type IA, domain 2 (InterPro:IPR003601), DNA topoisomerase, type IA, central (InterPro:IPR013497), DNA topoisomerase, type IA, central region, subdomain 3 (InterPro:IPR013826); BEST Arabidopsis thaliana protein match is: topoisomerase 3alpha (TAIR:AT5G63920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 840.0) & (original description: no original description) 0.9345363139688142 5 evm.model.tig00020557.24 no hits & (original description: no original description) 0.9335660994237266 8 evm.model.tig00000459.11 no hits & (original description: no original description) 0.9264587758543099 72 evm.model.tig00001376.13 no hits & (original description: no original description) 0.9259566758342572 8 evm.model.tig00000310.58 no hits & (original description: no original description) 0.9258065524171829 9 evm.model.tig00001231.2 no hits & (original description: no original description) 0.9256688894094833 77 evm.model.tig00000743.18 no hits & (original description: no original description) 0.9253255918718024 38 evm.model.tig00000849.16 no hits & (original description: no original description) 0.9252453083086637 39 evm.model.tig00020943.76 no hits & (original description: no original description) 0.9238554278205716 56 evm.model.tig00021462.15 no hits & (original description: no original description) 0.9236763928933357 51 evm.model.tig00020553.68 (at5g40200 : 238.0) Encodes a putative DegP protease.; DegP protease 9 (DegP9); FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DEGP protease 2 (TAIR:AT2G47940.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 476.0) & (original description: no original description) 0.9236632254757349 30 evm.model.tig00000042.27 no hits & (original description: no original description) 0.9232513080545681 54 evm.model.tig00021571.10 no hits & (original description: no original description) 0.9219492646836694 59 evm.model.tig00000076.169 no hits & (original description: no original description) 0.9215514953494929 18 evm.model.tig00021721.24 no hits & (original description: no original description) 0.9208085441929836 19 evm.model.tig00021038.42 no hits & (original description: no original description) 0.9189169827774187 53 evm.model.tig00000405.24 no hits & (original description: no original description) 0.9185099963254293 97 evm.model.tig00021037.10 no hits & (original description: no original description) 0.9181644782370649 78 evm.model.tig00000692.66 no hits & (original description: no original description) 0.9178810843327267 23 evm.model.tig00000385.17 no hits & (original description: no original description) 0.91774915721537 59 evm.model.tig00021434.36 no hits & (original description: no original description) 0.9158511270284853 33 evm.model.tig00000480.62 no hits & (original description: no original description) 0.9139176317670428 75 evm.model.tig00021534.7 no hits & (original description: no original description) 0.9136054045176708 52 evm.model.tig00020876.19 (at5g53080 : 80.5) Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 161.0) & (original description: no original description) 0.9135335928629542 59 evm.model.tig00021493.55 no hits & (original description: no original description) 0.9134101740464702 61 evm.model.tig00000254.102 no hits & (original description: no original description) 0.9122966696566828 73 evm.model.tig00020629.19 no hits & (original description: no original description) 0.9115256152172847 95 evm.model.tig00000981.14 (at2g36390 : 474.0) Encodes a starch branching enzyme (EC.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout plant tissues.; starch branching enzyme 2.1 (SBE2.1); FUNCTIONS IN: 1,4-alpha-glucan branching enzyme activity; INVOLVED IN: amylopectin biosynthetic process, starch metabolic process; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 13, N-terminal (InterPro:IPR004193), Immunoglobulin E-set (InterPro:IPR014756), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Alpha-amylase, C-terminal all beta (InterPro:IPR006048), Immunoglobulin-like fold (InterPro:IPR013783), Glycosyl hydrolase, family 13, all-beta (InterPro:IPR013780), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781), Glycosyl hydrolase, family 13, catalytic domain (InterPro:IPR006047); BEST Arabidopsis thaliana protein match is: starch branching enzyme 2.2 (TAIR:AT5G03650.1); Has 15972 Blast hits to 15848 proteins in 2360 species: Archae - 125; Bacteria - 12355; Metazoa - 437; Fungi - 446; Plants - 1422; Viruses - 0; Other Eukaryotes - 1187 (source: NCBI BLink). & (q08047|glgb_maize : 404.0) 1,4-alpha-glucan branching enzyme IIB, chloroplast precursor (EC 2.4.1.18) (Starch branching enzyme IIB) (Q-enzyme) - Zea mays (Maize) & (reliability: 948.0) & (original description: no original description) 0.9113319928889053 91 evm.model.tig00000042.26 no hits & (original description: no original description) 0.9102680532084174 44 evm.model.tig00001374.18 no hits & (original description: no original description) 0.9099424142400969 42 evm.model.tig00021489.33 no hits & (original description: no original description) 0.9096487513593002 37 evm.model.tig00021244.36 no hits & (original description: no original description) 0.9093778345362221 38 evm.model.tig00000391.21 no hits & (original description: no original description) 0.9084179652258568 39 evm.model.tig00021440.7 no hits & (original description: no original description) 0.908227606635411 41 evm.model.tig00000025.33 no hits & (original description: no original description) 0.9081543899680534 92 evm.model.tig00020909.10 no hits & (original description: no original description) 0.9080077503550724 43 evm.model.tig00000448.6 (at5g22980 : 132.0) serine carboxypeptidase-like 47 (scpl47); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 48 (TAIR:AT3G45010.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p52712|cbpx_orysa : 129.0) Serine carboxypeptidase-like precursor (EC 3.4.16.-) - Oryza sativa (Rice) & (reliability: 256.0) & (original description: no original description) 0.9072654969700462 44 evm.model.tig00020660.23 (at4g10180 : 270.0) Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling.; DE-ETIOLATED 1 (DET1); FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, negative regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: De-etiolated protein 1, Det1 (InterPro:IPR019138), Six-hairpin glycosidase-like (InterPro:IPR008928); Has 248 Blast hits to 240 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). & (reliability: 540.0) & (original description: no original description) 0.9067986474003373 71 evm.model.tig00000215.111 no hits & (original description: no original description) 0.9064412489363702 78 evm.model.tig00001021.9 no hits & (original description: no original description) 0.9063254485585363 47 evm.model.tig00000215.35 (at2g35920 : 234.0) RNA helicase family protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G04895.1); Has 15667 Blast hits to 10761 proteins in 1709 species: Archae - 0; Bacteria - 5024; Metazoa - 4470; Fungi - 1848; Plants - 1329; Viruses - 777; Other Eukaryotes - 2219 (source: NCBI BLink). & (reliability: 424.0) & (original description: no original description) 0.905771178359077 49 evm.model.tig00000900.35 (at1g51350 : 201.0) ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid lumen; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 1374 Blast hits to 1058 proteins in 203 species: Archae - 0; Bacteria - 0; Metazoa - 493; Fungi - 490; Plants - 280; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink). & (reliability: 402.0) & (original description: no original description) 0.9055747915528697 50 evm.model.tig00020610.75 no hits & (original description: no original description) 0.9054677448213557 96 evm.model.tig00000241.189 (at2g39130 : 82.4) Transmembrane amino acid transporter family protein; FUNCTIONS IN: amino acid transmembrane transporter activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT3G54830.1); Has 5002 Blast hits to 4966 proteins in 291 species: Archae - 22; Bacteria - 61; Metazoa - 1689; Fungi - 998; Plants - 1489; Viruses - 3; Other Eukaryotes - 740 (source: NCBI BLink). & (reliability: 164.8) & (original description: no original description) 0.904252508852632 52 evm.model.tig00020660.55 no hits & (original description: no original description) 0.9040896838593191 97 evm.model.tig00000203.26 no hits & (original description: no original description) 0.9039602693240175 54 evm.model.tig00020592.18 no hits & (original description: no original description) 0.9038946797694067 77 evm.model.tig00001343.11 no hits & (original description: no original description) 0.9021436273349563 100 evm.model.tig00000455.30 no hits & (original description: no original description) 0.9020525458205886 60 evm.model.tig00020515.17 no hits & (original description: no original description) 0.9019872396611691 61 evm.model.tig00021314.5 no hits & (original description: no original description) 0.90194980302908 62 evm.model.tig00000227.15 no hits & (original description: no original description) 0.9019225056102256 94 evm.model.tig00001535.3 no hits & (original description: no original description) 0.9018527741232919 64 evm.model.tig00021521.9 no hits & (original description: no original description) 0.9011945430580108 65 evm.model.tig00000189.39 no hits & (original description: no original description) 0.9011045818576898 67 evm.model.tig00001128.2 (at4g25350 : 168.0) SHB1 encodes a nuclear and cytosolic protein that has motifs homologous with SYG1 protein family members. Acts in cryptochrome signaling. Overexpression of SHB1 enhanced the expression of PHYTOCHROME-INTERACTING FACTOR4 (PIF4) under red light and promoted proteasome-mediated degradation of phytochrome A and hypocotyl elongation under far-red light. A knockout allele suppressed LONG HYPOCOTYL IN FAR-RED LIGHT1 (HFR1) expression and showed several deetiolation phenotypes. Acts upstream of HFR1. Regulates seed development.; SHORT HYPOCOTYL UNDER BLUE1 (SHB1); CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: EXS (ERD1/XPR1/SYG1) family protein (TAIR:AT1G35350.1); Has 1169 Blast hits to 1111 proteins in 205 species: Archae - 2; Bacteria - 6; Metazoa - 265; Fungi - 425; Plants - 309; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink). & (reliability: 336.0) & (original description: no original description) 0.9007065460171328 84 evm.model.tig00021127.70 (at5g39040 : 163.0) Encodes a member of TAP subfamily of ABC transporters that is located in the vacuole. Mutants are hypersensitive to aluminum and the gene product may be important for intracellular movement of some substrate, possibly chelated Al, as part of a mechanism of aluminum sequestration.; transporter associated with antigen processing protein 2 (TAP2); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: response to aluminum ion; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 11 (TAIR:AT1G02520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q6yuu5|mdr_orysa : 150.0) Putative multidrug resistance protein (P-glycoprotein) - Oryza sativa (Rice) & (reliability: 326.0) & (original description: no original description) 0.8997689621877837 71 evm.model.tig00000269.38 no hits & (original description: no original description) 0.8996014907871613 75 evm.model.tig00020629.29 no hits & (original description: no original description) 0.8992043112412481 75 evm.model.tig00020510.27 (o49230|etr1_braol : 145.0) Ethylene receptor (EC 2.7.13.3) - Brassica oleracea (Wild cabbage) & (at1g66340 : 143.0) Similar to prokaryote sensory transduction proteins. Contains a histidine kinase and a response regulator domain. Homodimer. Membrane component. Binds ethylene. Mutations affect ethylene binding and metabolism of other plant hormones such as auxin, cytokinins, ABA and gibberellic acid. Ethylene receptor. Has histidine kinase activity. Is regulated by RTE1.; ETHYLENE RESPONSE 1 (ETR1); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction histidine kinase, hybrid-type, ethylene sensor (InterPro:IPR014525), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), GAF (InterPro:IPR003018), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: ethylene response sensor 1 (TAIR:AT2G40940.1); Has 102721 Blast hits to 98263 proteins in 3046 species: Archae - 757; Bacteria - 90102; Metazoa - 18; Fungi - 1611; Plants - 2314; Viruses - 21; Other Eukaryotes - 7898 (source: NCBI BLink). & (reliability: 258.0) & (original description: no original description) 0.8983092231442318 95 evm.model.tig00000227.52 no hits & (original description: no original description) 0.8965153948219681 90 evm.model.tig00000492.85 no hits & (original description: no original description) 0.8954625338248959 85 evm.model.tig00000025.35 no hits & (original description: no original description) 0.8953963260250388 86 evm.model.tig00021037.72 no hits & (original description: no original description) 0.895314366129545 87 evm.model.tig00000204.49 no hits & (original description: no original description) 0.8952211837670813 89 evm.model.tig00000204.33 no hits & (original description: no original description) 0.8950277123328101 91 evm.model.tig00000042.236 (at1g27320 : 119.0) Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2.; histidine kinase 3 (HK3); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CHASE (InterPro:IPR006189), Signal transduction histidine kinase, core (InterPro:IPR005467), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: histidine kinase 2 (TAIR:AT5G35750.1); Has 124308 Blast hits to 110912 proteins in 3043 species: Archae - 772; Bacteria - 110408; Metazoa - 31; Fungi - 2185; Plants - 2022; Viruses - 28; Other Eukaryotes - 8862 (source: NCBI BLink). & (o48929|etr1_tobac : 94.0) Ethylene receptor (EC 2.7.13.3) (NT-ETR1) - Nicotiana tabacum (Common tobacco) & (reliability: 238.0) & (original description: no original description) 0.8942847813253438 93 evm.model.tig00000498.98 no hits & (original description: no original description) 0.8941193687590043 94 evm.model.tig00000983.15 no hits & (original description: no original description) 0.892317436379902 98 evm.model.tig00020849.39 no hits & (original description: no original description) 0.8921953154886656 99