Sequence Description Alias PCC hrr evm.model.tig00000808.20 no hits & (original description: no original description) 0.9139011643164547 11 evm.model.tig00000989.32 no hits & (original description: no original description) 0.9004512524450229 23 evm.model.tig00020807.20 no hits & (original description: no original description) 0.8939841665567326 54 evm.model.tig00020554.29 no hits & (original description: no original description) 0.8904241902378993 85 evm.model.tig00021522.17 (at3g49660 : 156.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: G-protein coupled receptor protein signaling pathway; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 118516 Blast hits to 43755 proteins in 1024 species: Archae - 92; Bacteria - 12360; Metazoa - 47439; Fungi - 25856; Plants - 15887; Viruses - 9; Other Eukaryotes - 16873 (source: NCBI BLink). & (p49026|gblp_tobac : 130.0) Guanine nucleotide-binding protein subunit beta-like protein - Nicotiana tabacum (Common tobacco) & (reliability: 282.0) & (original description: no original description) 0.8863836059778736 17 evm.model.tig00000711.50 no hits & (original description: no original description) 0.8838938714679958 29 evm.model.tig00020675.7 no hits & (original description: no original description) 0.8834723413443718 20 evm.model.tig00022075.75 no hits & (original description: no original description) 0.8830724308115653 51 evm.model.tig00000430.21 no hits & (original description: no original description) 0.8826157261910604 13 evm.model.tig00020537.47 no hits & (original description: no original description) 0.881494948463926 20 evm.model.tig00020960.42 no hits & (original description: no original description) 0.8811512445262332 11 evm.model.tig00001250.9 no hits & (original description: no original description) 0.8808262009025103 12 evm.model.tig00000692.57 no hits & (original description: no original description) 0.8789068587377411 32 evm.model.tig00021127.75 (at2g35920 : 181.0) RNA helicase family protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G04895.1); Has 15667 Blast hits to 10761 proteins in 1709 species: Archae - 0; Bacteria - 5024; Metazoa - 4470; Fungi - 1848; Plants - 1329; Viruses - 777; Other Eukaryotes - 2219 (source: NCBI BLink). & (reliability: 338.0) & (original description: no original description) 0.8778060018150664 70 evm.model.tig00000863.38 no hits & (original description: no original description) 0.8761336861629684 18 evm.model.tig00000361.66 no hits & (original description: no original description) 0.8749534338225607 61 evm.model.tig00000670.23 (at1g17370 : 117.0) oligouridylate binding protein 1B (UBP1B); FUNCTIONS IN: mRNA 3'-UTR binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G14100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description) 0.870578781480178 91 evm.model.tig00001229.4 (at5g09860 : 97.1) Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.; THO1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: production of ta-siRNAs involved in RNA interference, gene silencing by RNA; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: THO complex, subunit THOC1 (InterPro:IPR021861). & (reliability: 194.2) & (original description: no original description) 0.8687672931057931 91 evm.model.tig00001024.33 no hits & (original description: no original description) 0.8684957567317376 20 evm.model.tig00020848.21 (at1g79650 : 108.0) Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.; RADIATION SENSITIVE23B (RAD23B); FUNCTIONS IN: damaged DNA binding, ubiquitin binding, proteasome binding; INVOLVED IN: proteasomal ubiquitin-dependent protein catabolic process, base-excision repair, nucleotide-excision repair; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), UV excision repair protein Rad23 (InterPro:IPR004806), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), XPC-binding domain (InterPro:IPR015360), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Rad23 UV excision repair protein family (TAIR:AT1G16190.1). & (reliability: 216.0) & (original description: no original description) 0.8668288486552809 30 evm.model.tig00000057.33 no hits & (original description: no original description) 0.8665735258493357 63 evm.model.tig00000402.16 (at1g55310 : 108.0) Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein.; SC35-like splicing factor 33 (SR33); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: SC35-like splicing factor 30A (TAIR:AT3G13570.1). & (reliability: 216.0) & (original description: no original description) 0.8660737305116282 25 evm.model.tig00000241.97 no hits & (original description: no original description) 0.8654424442337659 27 evm.model.tig00021127.154 (at4g31770 : 185.0) Encodes a RNA lariat debranching enzyme required for embryogenesis.; debranching enzyme 1 (DBR1); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Lariat debranching enzyme, C-terminal (InterPro:IPR007708); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q6au07|dbr1_orysa : 183.0) Lariat debranching enzyme (EC 3.1.-.-) - Oryza sativa (Rice) & (reliability: 370.0) & (original description: no original description) 0.865245581139225 28 evm.model.tig00021582.13 no hits & (original description: no original description) 0.8646596876123885 30 evm.model.tig00000169.28 (at1g80930 : 587.0) MIF4G domain-containing protein / MA3 domain-containing protein; FUNCTIONS IN: RNA binding, binding; INVOLVED IN: translation, RNA metabolic process; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891), Armadillo-type fold (InterPro:IPR016024), MIF4G-like, type 3 (InterPro:IPR003890), MIF4-like, type 1/2/3 (InterPro:IPR016021); BEST Arabidopsis thaliana protein match is: Initiation factor eIF-4 gamma, MA3 (TAIR:AT1G52325.1); Has 51676 Blast hits to 28577 proteins in 1484 species: Archae - 86; Bacteria - 5039; Metazoa - 22313; Fungi - 6500; Plants - 3817; Viruses - 357; Other Eukaryotes - 13564 (source: NCBI BLink). & (reliability: 1174.0) & (original description: no original description) 0.8626974695660123 31 evm.model.tig00021181.7 no hits & (original description: no original description) 0.8608306868819693 34 evm.model.tig00000237.24 no hits & (original description: no original description) 0.8595267717261844 37 evm.model.tig00000980.21 (at5g63280 : 90.5) C2H2-like zinc finger protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G40710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 164.8) & (original description: no original description) 0.8594487703468914 36 evm.model.tig00021319.22 no hits & (original description: no original description) 0.8592917817179889 74 evm.model.tig00001052.12 no hits & (original description: no original description) 0.8592075220673903 38 evm.model.tig00021621.19 no hits & (original description: no original description) 0.8586082419315908 39 evm.model.tig00022075.17 no hits & (original description: no original description) 0.857872893329368 43 evm.model.tig00000989.49 no hits & (original description: no original description) 0.8574755954799295 44 evm.model.tig00000498.96 no hits & (original description: no original description) 0.8573345623503931 100 evm.model.tig00021612.28 no hits & (original description: no original description) 0.8572597629602877 46 evm.model.tig00001086.11 no hits & (original description: no original description) 0.8572045714488082 76 evm.model.tig00020961.81 (at3g20630 : 294.0) Encodes a ubiquitin-specific protease. Identical to TTN6. Loss of function mutations are embryo lethals, having development arrested at the preglobular/globular stage. Also involved in root responses to phosphate deficiency.; ubiquitin-specific protease 14 (UBP14); CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394), UBA-like (InterPro:IPR009060), Ubiquitinyl hydrolase (InterPro:IPR016652); Has 2045 Blast hits to 1942 proteins in 227 species: Archae - 0; Bacteria - 2; Metazoa - 1042; Fungi - 463; Plants - 217; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink). & (reliability: 588.0) & (original description: no original description) 0.8571352586524325 48 evm.model.tig00001181.9 (at1g54080 : 240.0) oligouridylate-binding protein 1A (UBP1A); FUNCTIONS IN: mRNA 3'-UTR binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G14100.1); Has 22193 Blast hits to 15481 proteins in 722 species: Archae - 0; Bacteria - 1057; Metazoa - 11734; Fungi - 2918; Plants - 4318; Viruses - 0; Other Eukaryotes - 2166 (source: NCBI BLink). & (q08935|roc1_nicsy : 98.6) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A) - Nicotiana sylvestris (Wood tobacco) & (reliability: 480.0) & (original description: no original description) 0.8563926129926186 79 evm.model.tig00000241.25 no hits & (original description: no original description) 0.8528976222507176 63 evm.model.tig00001001.18 no hits & (original description: no original description) 0.8521906969023975 81 evm.model.tig00000241.95 no hits & (original description: no original description) 0.8517169512793995 57 evm.model.tig00000254.13 no hits & (original description: no original description) 0.8491195828262424 76 evm.model.tig00001003.18 no hits & (original description: no original description) 0.8485052794834721 60 evm.model.tig00020780.53 no hits & (original description: no original description) 0.848119325504769 62 evm.model.tig00000711.72 no hits & (original description: no original description) 0.8474894064970352 63 evm.model.tig00021582.42 no hits & (original description: no original description) 0.8472764515184096 70 evm.model.tig00021582.20 no hits & (original description: no original description) 0.8463171336048881 66 evm.model.tig00000480.43 (at3g24590 : 83.6) Encodes a signal peptidase Plsp1 (plastidic type I signal peptidase 1). Required for thylakoid development. Functions in the maturation of the 75-kD component of the translocon at the outer envelope membrane of chloroplasts and oxygen evolving complex subunit 33 (OE33).; plastidic type i signal peptidase 1 (PLSP1); FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis, thylakoid membrane organization, protein maturation; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, plastid envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain (InterPro:IPR011056), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I, conserved site (InterPro:IPR019758), Peptidase S26, conserved region (InterPro:IPR019533), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A, signal peptidase I, serine active site (InterPro:IPR019756); BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT1G06870.1); Has 9773 Blast hits to 9438 proteins in 2404 species: Archae - 0; Bacteria - 7280; Metazoa - 206; Fungi - 105; Plants - 230; Viruses - 0; Other Eukaryotes - 1952 (source: NCBI BLink). & (reliability: 167.2) & (original description: no original description) 0.8446212960885917 71 evm.model.tig00021073.43 no hits & (original description: no original description) 0.8432006364231113 74 evm.model.tig00000144.154 no hits & (original description: no original description) 0.8411237237669654 75 evm.model.tig00001030.23 no hits & (original description: no original description) 0.8409619077501216 76 evm.model.tig00000241.87 no hits & (original description: no original description) 0.8407524034544901 77 evm.model.tig00000396.36 no hits & (original description: no original description) 0.8392736653791638 82 evm.model.tig00020710.109 no hits & (original description: no original description) 0.8380456058999141 83 evm.model.tig00000857.18 no hits & (original description: no original description) 0.8376139545138062 84 evm.model.tig00001127.11 no hits & (original description: no original description) 0.8328838948230619 93 evm.model.tig00020510.137 no hits & (original description: no original description) 0.832822620418958 94 evm.model.tig00000215.60 no hits & (original description: no original description) 0.832596859813579 96 evm.model.tig00000403.5 (at3g04500 : 127.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition motif-related (InterPro:IPR015464); BEST Arabidopsis thaliana protein match is: oligouridylate binding protein 1B (TAIR:AT1G17370.1); Has 13292 Blast hits to 10995 proteins in 692 species: Archae - 0; Bacteria - 989; Metazoa - 6848; Fungi - 1697; Plants - 2705; Viruses - 0; Other Eukaryotes - 1053 (source: NCBI BLink). & (reliability: 254.0) & (original description: no original description) 0.8320271159120839 100