Sequence Description Alias PCC hrr evm.model.tig00000792.7 (at5g20570 : 196.0) Encodes a ring-box 1 like protein and component of the SCF ubiquitinization complex mediating auxin responses. Forms a E3 ubiquitin ligase complex with CUL3A and At1g21780.1 a BTB domain protein.; RING-box 1 (RBX1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G42830.1); Has 1088 Blast hits to 1088 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 498; Fungi - 214; Plants - 176; Viruses - 3; Other Eukaryotes - 197 (source: NCBI BLink). & (reliability: 392.0) & (original description: no original description) 0.9562468123918331 5 evm.model.tig00000217.36 no hits & (original description: no original description) 0.9389242243097109 5 evm.model.tig00020961.103 no hits & (original description: no original description) 0.9373571794315938 3 evm.model.tig00000989.12 (at3g21510 : 84.0) Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).; histidine-containing phosphotransmitter 1 (AHP1); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, phosphotransfer (Hpt) domain (InterPro:IPR008207); BEST Arabidopsis thaliana protein match is: histidine-containing phosphotransfer factor 5 (TAIR:AT1G03430.1); Has 358 Blast hits to 357 proteins in 69 species: Archae - 2; Bacteria - 42; Metazoa - 0; Fungi - 41; Plants - 268; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). & (reliability: 165.6) & (original description: no original description) 0.9350657876754139 7 evm.model.tig00020961.37 no hits & (original description: no original description) 0.9340628566313752 5 evm.model.tig00000789.36 (at1g07140 : 143.0) Encodes a putative Ran-binding protein (siRanBP).; SIRANBP; FUNCTIONS IN: Ran GTPase binding; INVOLVED IN: intracellular transport, protein import into nucleus, translocation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein 1 (InterPro:IPR000156), Pleckstrin homology-type (InterPro:IPR011993); BEST Arabidopsis thaliana protein match is: Pleckstrin homology (PH) domain superfamily protein (TAIR:AT2G30060.1); Has 2132 Blast hits to 1580 proteins in 275 species: Archae - 9; Bacteria - 76; Metazoa - 1014; Fungi - 369; Plants - 163; Viruses - 39; Other Eukaryotes - 462 (source: NCBI BLink). & (reliability: 286.0) & (original description: no original description) 0.9327120422315248 6 evm.model.tig00000852.28 no hits & (original description: no original description) 0.9251068641436959 7 evm.model.tig00000217.32 (at1g23900 : 94.4) Encodes large subunit of the heterotetrameric adaptor protein complex AP-1. AP-1 is required for clathrin coated vesicles budding from the trans-Golgi network or plasma membrane; gamma-adaptin 1 (GAMMA-ADAPTIN 1); FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: vesicle-mediated transport; LOCATED IN: AP-1 adaptor complex; CONTAINS InterPro DOMAIN/s: Adaptor protein complex AP-1, gamma subunit (InterPro:IPR017107), Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Clathrin adaptor, gamma-adaptin, appendage (InterPro:IPR008153), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Adaptor protein complex AP-1, gamma subunit (TAIR:AT1G60070.1); Has 3543 Blast hits to 3448 proteins in 308 species: Archae - 0; Bacteria - 4; Metazoa - 1517; Fungi - 967; Plants - 387; Viruses - 0; Other Eukaryotes - 668 (source: NCBI BLink). & (reliability: 188.8) & (original description: no original description) 0.9235897247485664 8 evm.model.tig00000404.30 (at1g48160 : 100.0) signal recognition particle 19 kDa protein, putative / SRP19, putative; FUNCTIONS IN: 7S RNA binding; INVOLVED IN: protein targeting, SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle, signal recognition particle, endoplasmic reticulum targeting; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP19 subunit (InterPro:IPR002778); Has 500 Blast hits to 499 proteins in 236 species: Archae - 81; Bacteria - 0; Metazoa - 158; Fungi - 144; Plants - 60; Viruses - 0; Other Eukaryotes - 57 (source: NCBI BLink). & (p49964|srp19_orysa : 91.3) Signal recognition particle 19 kDa protein (SRP19) - Oryza sativa (Rice) & (reliability: 200.0) & (original description: no original description) 0.9204171823425719 9 evm.model.tig00000342.28 no hits & (original description: no original description) 0.9135256279356391 34 evm.model.tig00021464.53 (at5g10260 : 320.0) RAB GTPase homolog H1E (RABH1e); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab6-related (InterPro:IPR015600); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog H1D (TAIR:AT2G22290.1); Has 27017 Blast hits to 26988 proteins in 737 species: Archae - 21; Bacteria - 160; Metazoa - 14299; Fungi - 3762; Plants - 2966; Viruses - 20; Other Eukaryotes - 5789 (source: NCBI BLink). & (p31583|rhn1_nicpl : 155.0) Ras-related protein RHN1 - Nicotiana plumbaginifolia (Leadwort-leaved tobacco) & (reliability: 640.0) & (original description: no original description) 0.9096425533183634 11 evm.model.tig00000857.6 no hits & (original description: no original description) 0.9094340036073104 12 evm.model.tig00020909.35 (at5g49510 : 144.0) prefoldin 3 (PFD3); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin alpha-like (InterPro:IPR004127), Prefoldin (InterPro:IPR009053), Prefoldin, subunit 3 (InterPro:IPR016655); Has 406 Blast hits to 406 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 158; Fungi - 133; Plants - 37; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink). & (reliability: 288.0) & (original description: no original description) 0.9075974463549826 20 evm.model.tig00020539.37 (p80028|trxh_chlre : 104.0) Thioredoxin H-type (TRX-H) (Thioredoxin CH1) - Chlamydomonas reinhardtii & (at2g35010 : 84.3) thioredoxin O1 (TO1); INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin O2 (TAIR:AT1G31020.1); Has 13800 Blast hits to 13766 proteins in 2821 species: Archae - 178; Bacteria - 7899; Metazoa - 1073; Fungi - 652; Plants - 1267; Viruses - 5; Other Eukaryotes - 2726 (source: NCBI BLink). & (reliability: 168.6) & (original description: no original description) 0.9064773136551554 14 evm.model.tig00021352.5 (at1g51510 : 152.0) This gene is predicted to encode a protein involved in the exon junction complex. Though there is a predicted RNA binding motif, in the Drosophila ortholog (33% identity), this motif mediates interactions with Mago and is not available for RNA binding. The Arabidopsis Y14 protein appears to be predominantly nucleolar, but there is also some evidence for its presence in the cytoplasm.; Y14; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: nucleoplasm, exon-exon junction complex, nuclear body, nucleolus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA-binding motif protein 8 (InterPro:IPR008111); BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 (TAIR:AT5G64200.2); Has 11259 Blast hits to 10017 proteins in 625 species: Archae - 2; Bacteria - 976; Metazoa - 6273; Fungi - 1165; Plants - 1793; Viruses - 0; Other Eukaryotes - 1050 (source: NCBI BLink). & (reliability: 304.0) & (original description: no original description) 0.9061806961571163 34 evm.model.tig00000241.28 (at1g09760 : 99.0) U2 small nuclear ribonucleoprotein A (U2A'); INVOLVED IN: nuclear mRNA splicing, via spliceosome, response to cold; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U2A'/phosphoprotein 32 family A, C-terminal (InterPro:IPR003603); Has 8109 Blast hits to 6297 proteins in 450 species: Archae - 0; Bacteria - 3635; Metazoa - 3194; Fungi - 303; Plants - 219; Viruses - 2; Other Eukaryotes - 756 (source: NCBI BLink). & (reliability: 198.0) & (original description: no original description) 0.9060176589231003 55 evm.model.tig00021435.44 (at3g43810 : 228.0) EF hand domain protein encodes a calmodulin. Can functionally complement a yeast CaM mutant.; calmodulin 7 (CAM7); FUNCTIONS IN: calcium ion binding; INVOLVED IN: detection of calcium ion, calcium-mediated signaling, regulation of photomorphogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin 5 (TAIR:AT2G27030.3); Has 33955 Blast hits to 23167 proteins in 1763 species: Archae - 4; Bacteria - 223; Metazoa - 14467; Fungi - 7347; Plants - 6966; Viruses - 0; Other Eukaryotes - 4948 (source: NCBI BLink). & (p17928|calm_medsa : 227.0) Calmodulin (CaM) - Medicago sativa (Alfalfa) & (reliability: 456.0) & (original description: no original description) 0.9050935960344825 49 evm.model.tig00020531.48 (at2g03870 : 139.0) Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: U6 snRNA-associated Sm-like protein LSm7 (InterPro:IPR017132), Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: probable small nuclear ribonucleoprotein G (TAIR:AT2G23930.1); Has 1450 Blast hits to 1450 proteins in 289 species: Archae - 222; Bacteria - 0; Metazoa - 489; Fungi - 323; Plants - 216; Viruses - 0; Other Eukaryotes - 200 (source: NCBI BLink). & (reliability: 278.0) & (original description: no original description) 0.9050911370053195 23 evm.model.tig00000692.67 (at2g07340 : 82.0) PREFOLDIN 1 (PFD1); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777), Prefoldin (InterPro:IPR009053); Has 281 Blast hits to 281 proteins in 130 species: Archae - 13; Bacteria - 2; Metazoa - 136; Fungi - 51; Plants - 52; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). & (reliability: 164.0) & (original description: no original description) 0.9038434342209672 48 evm.model.tig00001107.3 (at5g16440 : 165.0) Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway.; isopentenyl diphosphate isomerase 1 (IPP1); FUNCTIONS IN: isopentenyl-diphosphate delta-isomerase activity; INVOLVED IN: chlorophyll biosynthetic process, isoprenoid biosynthetic process, isopentenyl diphosphate biosynthetic process; LOCATED IN: cytosol, chloroplast, plastid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase domain (InterPro:IPR000086), Isopentenyl-diphosphate delta-isomerase, type 1 (InterPro:IPR011876); BEST Arabidopsis thaliana protein match is: isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 (TAIR:AT3G02780.1); Has 2226 Blast hits to 2225 proteins in 801 species: Archae - 35; Bacteria - 1199; Metazoa - 210; Fungi - 137; Plants - 180; Viruses - 0; Other Eukaryotes - 465 (source: NCBI BLink). & (reliability: 330.0) & (original description: no original description) 0.9000179750779443 20 evm.model.tig00020780.62 (at3g22480 : 117.0) prefoldin 2 (PDF2); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777), Prefoldin (InterPro:IPR009053); Has 423 Blast hits to 423 proteins in 206 species: Archae - 15; Bacteria - 0; Metazoa - 139; Fungi - 122; Plants - 68; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description) 0.8970951225505515 53 evm.model.tig00000704.57 no hits & (original description: no original description) 0.8957505677591461 22 evm.model.tig00021043.13 no hits & (original description: no original description) 0.8944437742012027 74 evm.model.tig00021537.6 no hits & (original description: no original description) 0.8942781695036247 77 evm.model.tig00001001.10 no hits & (original description: no original description) 0.8938183361274775 50 evm.model.tig00001003.32 (at2g17380 : 234.0) Encodes clathrin assembly protein AP19.; associated protein 19 (AP19); FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, mitochondrion, clathrin vesicle coat, clathrin coat of trans-Golgi network vesicle, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor AP1, sigma subunit (InterPro:IPR015604), Adaptor protein complex, sigma subunit (InterPro:IPR016635), Clathrin adaptor, sigma subunit/coatomer, zeta subunit (InterPro:IPR000804), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complex small chain family protein (TAIR:AT4G35410.2); Has 1854 Blast hits to 1853 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 748; Fungi - 497; Plants - 257; Viruses - 0; Other Eukaryotes - 352 (source: NCBI BLink). & (o50016|ap2s1_maize : 163.0) AP-2 complex subunit sigma-1 (Clathrin coat assembly protein AP17) (Clathrin coat-associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (Clathrin assembly protein 2 small chain) - Zea mays (Maize) & (reliability: 462.0) & (original description: no original description) 0.892735280246141 26 evm.model.tig00001187.3 (at2g30000 : 220.0) PHF5-like protein; CONTAINS InterPro DOMAIN/s: PHF5-like (InterPro:IPR005345); BEST Arabidopsis thaliana protein match is: PHF5-like protein (TAIR:AT1G07170.3); Has 420 Blast hits to 420 proteins in 206 species: Archae - 0; Bacteria - 0; Metazoa - 129; Fungi - 128; Plants - 86; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink). & (reliability: 440.0) & (original description: no original description) 0.8921444481359483 63 evm.model.tig00000310.74 no hits & (original description: no original description) 0.8899290093220913 28 evm.model.tig00000912.18 no hits & (original description: no original description) 0.8885338022273879 36 evm.model.tig00021133.4 (at3g62840 : 152.0) Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G47640.3); Has 794 Blast hits to 794 proteins in 230 species: Archae - 2; Bacteria - 0; Metazoa - 329; Fungi - 181; Plants - 143; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink). & (reliability: 304.0) & (original description: no original description) 0.8874865265103403 54 evm.model.tig00000402.10 no hits & (original description: no original description) 0.8871471367743121 31 evm.model.tig00000970.25 (at4g16265 : 97.1) One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At3g16980; NRPB9B; FUNCTIONS IN: DNA-directed RNA polymerase activity, transcription regulator activity, DNA binding, zinc ion binding, nucleic acid binding; INVOLVED IN: transcription, regulation of transcription; LOCATED IN: DNA-directed RNA polymerase V complex, DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), DNA-directed RNA polymerase, M/15kDa subunit (InterPro:IPR001529), DNA-directed RNA polymerase M, 15kDa subunit, conserved site (InterPro:IPR019761); BEST Arabidopsis thaliana protein match is: RNA polymerases M/15 Kd subunit (TAIR:AT3G16980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 194.2) & (original description: no original description) 0.8864539809908757 32 evm.model.tig00001001.25 (p49104|rab2b_maize : 357.0) Ras-related protein Rab-2-B - Zea mays (Maize) & (at4g17170 : 348.0) member of RAB gene family; RAB GTPase homolog B1C (RABB1C); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: ER to Golgi vesicle-mediated transport, pollen sperm cell differentiation, cell growth; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: GTP-binding 2 (TAIR:AT4G35860.1); Has 27116 Blast hits to 27043 proteins in 734 species: Archae - 17; Bacteria - 131; Metazoa - 14131; Fungi - 4055; Plants - 2966; Viruses - 20; Other Eukaryotes - 5796 (source: NCBI BLink). & (reliability: 696.0) & (original description: no original description) 0.8862424602692274 33 evm.model.tig00000197.4 no hits & (original description: no original description) 0.8859685129991383 34 evm.model.tig00001307.5 no hits & (original description: no original description) 0.8857636739772329 35 evm.model.tig00000880.23 (at3g24010 : 140.0) ING1 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.; INHIBITOR OF GROWTH 1 (ING1); CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: PHD finger protein-related (TAIR:AT1G54390.3); Has 1560 Blast hits to 1473 proteins in 194 species: Archae - 0; Bacteria - 0; Metazoa - 910; Fungi - 445; Plants - 120; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink). & (reliability: 280.0) & (original description: no original description) 0.8843398119033343 36 evm.model.tig00000829.13 no hits & (original description: no original description) 0.8842076924906832 37 evm.model.tig00020629.95 (at1g78870 : 211.0) UBC35/UBC13A encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UBC35/UBC13A can form diubiquitin and triubiquitin chains in combination with MMZ1,2,3,4/(UEV1A,B,C,D) in vitro. It can also functionally complement an mms2 ubc13 mutation in budding yeast by increasing the double mutant's viability in the presence of the DNA damaging agent MMS, when it is co-expressed with MMZ / UEV1 genes. A wild type phenotype is restored with MMZ3/UEV1C and MMZ4/UEV1D, but only partial complementation is achieved with MMZ1/UEV1A or MMZ2/UEV1B.; ubiquitin-conjugating enzyme 35 (UBC35); FUNCTIONS IN: ubiquitin-protein ligase activity, protein binding; INVOLVED IN: root epidermal cell differentiation, response to cadmium ion, postreplication repair, response to iron ion, ubiquitin-dependent protein catabolic process; LOCATED IN: UBC13-MMS2 complex; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 36 (TAIR:AT1G16890.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p25866|ubc2_wheat : 98.2) Ubiquitin-conjugating enzyme E2-17 kDa (EC 6.3.2.19) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) - Triticum aestivum (Wheat) & (reliability: 422.0) & (original description: no original description) 0.8833239254378913 38 evm.model.tig00021351.15 (at1g51510 : 128.0) This gene is predicted to encode a protein involved in the exon junction complex. Though there is a predicted RNA binding motif, in the Drosophila ortholog (33% identity), this motif mediates interactions with Mago and is not available for RNA binding. The Arabidopsis Y14 protein appears to be predominantly nucleolar, but there is also some evidence for its presence in the cytoplasm.; Y14; FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: nucleoplasm, exon-exon junction complex, nuclear body, nucleolus, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA-binding motif protein 8 (InterPro:IPR008111); BEST Arabidopsis thaliana protein match is: ortholog of human splicing factor SC35 (TAIR:AT5G64200.2); Has 11259 Blast hits to 10017 proteins in 625 species: Archae - 2; Bacteria - 976; Metazoa - 6273; Fungi - 1165; Plants - 1793; Viruses - 0; Other Eukaryotes - 1050 (source: NCBI BLink). & (reliability: 256.0) & (original description: no original description) 0.8832008395414571 71 evm.model.tig00020903.45 no hits & (original description: no original description) 0.8831256013331844 48 evm.model.tig00000140.19 (at3g03800 : 108.0) member of SYP13 Gene Family; syntaxin of plants 131 (SYP131); FUNCTIONS IN: SNAP receptor activity; INVOLVED IN: intracellular protein transport, cellular membrane fusion; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012), Syntaxin, N-terminal (InterPro:IPR006011); BEST Arabidopsis thaliana protein match is: syntaxin of plants 132 (TAIR:AT5G08080.1); Has 2798 Blast hits to 2798 proteins in 353 species: Archae - 4; Bacteria - 78; Metazoa - 1293; Fungi - 501; Plants - 492; Viruses - 0; Other Eukaryotes - 430 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description) 0.882042571541601 41 evm.model.tig00020965.24 no hits & (original description: no original description) 0.880562337192292 42 evm.model.tig00000553.39 (at5g48870 : 122.0) SAD1 encodes a polypeptide similar to multifunctional Sm-like snRNP proteins that are required for mRNA splicing, export, and degradation. Mutation in this gene increases plant sensitivity to drought stress and ABA in seed germination, root growth, and the expression of some stress-responsive genes.; SUPERSENSITIVE TO ABA AND DROUGHT 1 (SAD1); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 244.0) & (original description: no original description) 0.8803235436841332 43 evm.model.tig00000269.67 no hits & (original description: no original description) 0.8802737560460937 44 evm.model.tig00020553.48 (at2g23930 : 97.4) probable small nuclear ribonucleoprotein G (SNRNP-G); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G11500.1); Has 1073 Blast hits to 1073 proteins in 252 species: Archae - 104; Bacteria - 0; Metazoa - 399; Fungi - 257; Plants - 180; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink). & (p24715|ruxg_medsa : 91.3) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G) (SmG) - Medicago sativa (Alfalfa) & (reliability: 194.8) & (original description: no original description) 0.880070937420311 66 evm.model.tig00000144.76 (at2g35635 : 253.0) encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions.; ubiquitin 7 (UBQ7); CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: related to ubiquitin 1 (TAIR:AT1G31340.1); Has 16104 Blast hits to 7343 proteins in 724 species: Archae - 0; Bacteria - 35; Metazoa - 7305; Fungi - 1873; Plants - 3622; Viruses - 336; Other Eukaryotes - 2933 (source: NCBI BLink). & (p14624|ubiq_chlre : 147.0) Ubiquitin - Chlamydomonas reinhardtii & (reliability: 504.0) & (original description: no original description) 0.8797126689745635 46 evm.model.tig00001668.4 (at5g53400 : 201.0) Encodes BOBBER1 (BOB1), a non-canonical small heat shock protein required for both development and thermotolerance. BOB1 is cytoplasmic at basal temperatures but forms heat shock granules containing canonical small heat shock proteins at high temperatures.; BOBBER1 (BOB1); CONTAINS InterPro DOMAIN/s: CS-like domain (InterPro:IPR007052), HSP20-like chaperone (InterPro:IPR008978), CS domain (InterPro:IPR017447); BEST Arabidopsis thaliana protein match is: HSP20-like chaperones superfamily protein (TAIR:AT4G27890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 402.0) & (original description: no original description) 0.8795657741165487 47 evm.model.tig00001085.12 no hits & (original description: no original description) 0.8783239505809293 75 evm.model.tig00020848.37 (q96558|ugdh_soybn : 608.0) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH) - Glycine max (Soybean) & (at5g39320 : 602.0) UDP-glucose 6-dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucose/GDP-mannose dehydrogenase, N-terminal (InterPro:IPR001732), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain (InterPro:IPR014028), UDP-glucose/GDP-mannose dehydrogenase, C-terminal (InterPro:IPR014027), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose/GDP-mannose dehydrogenase, dimerisation (InterPro:IPR014026), Nucleotide sugar dehydrogenase (InterPro:IPR017476); BEST Arabidopsis thaliana protein match is: UDP-glucose 6-dehydrogenase family protein (TAIR:AT3G29360.2); Has 13476 Blast hits to 13452 proteins in 2147 species: Archae - 313; Bacteria - 7039; Metazoa - 213; Fungi - 97; Plants - 213; Viruses - 14; Other Eukaryotes - 5587 (source: NCBI BLink). & (reliability: 1204.0) & (original description: no original description) 0.8748147952746389 57 evm.model.tig00000826.22 (q9lst7|psb3_orysa : 263.0) Proteasome subunit beta type 3 (EC 3.4.25.1) (20S proteasome alpha subunit C) (20S proteasome subunit beta-3) - Oryza sativa (Rice) & (at1g21720 : 259.0) 20S proteasome beta subunit PBC1 truncated protein (PBC1); proteasome beta subunit C1 (PBC1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit C2 (TAIR:AT1G77440.2); Has 3309 Blast hits to 3309 proteins in 436 species: Archae - 498; Bacteria - 34; Metazoa - 1257; Fungi - 828; Plants - 282; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink). & (reliability: 518.0) & (original description: no original description) 0.8746350186025704 69 evm.model.tig00001466.9 (o24362|psa3_spiol : 336.0) Proteasome subunit alpha type 3 (EC 3.4.25.1) (20S proteasome alpha subunit G) (20S proteasome subunit alpha-7) (Proteasome component C8) - Spinacia oleracea (Spinach) & (at2g27020 : 332.0) Encodes 20S proteasome alpha 7 subunit PAG1.; 20S proteasome alpha subunit G1 (PAG1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to cadmium ion, response to cold, ubiquitin-dependent protein catabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome alpha subunit E2 (TAIR:AT3G14290.1); Has 5862 Blast hits to 5858 proteins in 463 species: Archae - 870; Bacteria - 9; Metazoa - 1980; Fungi - 1345; Plants - 774; Viruses - 0; Other Eukaryotes - 884 (source: NCBI BLink). & (reliability: 664.0) & (original description: no original description) 0.8743292477211115 51 evm.model.tig00001355.8 no hits & (original description: no original description) 0.8726810919737741 53 evm.model.tig00000704.44 (at4g02620 : 133.0) vacuolar ATPase subunit F family protein; FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V1 complex, subunit F, eukaryotic (InterPro:IPR005772), ATPase, V1/A1 complex, subunit F (InterPro:IPR008218); Has 520 Blast hits to 520 proteins in 240 species: Archae - 39; Bacteria - 0; Metazoa - 211; Fungi - 130; Plants - 61; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink). & (reliability: 266.0) & (original description: no original description) 0.8718949180497817 54 evm.model.tig00000144.35 no hits & (original description: no original description) 0.8718310293657187 55 evm.model.tig00000808.43 (at1g56450 : 253.0) 20S proteasome beta subunit PBG1 (PBG1) mRNA, complete cds; 20S proteasome beta subunit G1 (PBG1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to cadmium ion, response to salt stress, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, cytosolic ribosome; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome endopeptidase complex, beta subunit (InterPro:IPR016295), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT4G31300.2); Has 2530 Blast hits to 2530 proteins in 413 species: Archae - 597; Bacteria - 46; Metazoa - 632; Fungi - 578; Plants - 277; Viruses - 0; Other Eukaryotes - 400 (source: NCBI BLink). & (reliability: 506.0) & (original description: no original description) 0.8716006033853719 83 evm.model.tig00021281.10 no hits & (original description: no original description) 0.871165482257133 84 evm.model.tig00021464.16 (at1g53750 : 664.0) 26S proteasome AAA-ATPase subunit RPT1a (RPT1a) mRNA,; regulatory particle triple-A 1A (RPT1A); FUNCTIONS IN: ATPase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (TAIR:AT1G53780.2); Has 30646 Blast hits to 28391 proteins in 3108 species: Archae - 1452; Bacteria - 10350; Metazoa - 4866; Fungi - 3564; Plants - 3128; Viruses - 30; Other Eukaryotes - 7256 (source: NCBI BLink). & (q9fxt9|prs7_orysa : 664.0) 26S protease regulatory subunit 7 (26S proteasome subunit 7) (26S proteasome AAA-ATPase subunit RPT1) (Regulatory particle triple-A ATPase subunit 1) - Oryza sativa (Rice) & (reliability: 1328.0) & (original description: no original description) 0.8709020957629106 69 evm.model.tig00021168.11 (at4g26430 : 167.0) one of two genes encoding subunit 6 of COP9 signalosome complex; COP9 signalosome subunit 6B (CSN6B); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9 signalosome subunit 6A (TAIR:AT5G56280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 334.0) & (original description: no original description) 0.870232121708632 59 evm.model.tig00000829.24 (at4g21660 : 385.0) proline-rich spliceosome-associated (PSP) family protein; INVOLVED IN: mRNA processing; LOCATED IN: nucleus, chloroplast; CONTAINS InterPro DOMAIN/s: PSP, proline-rich (InterPro:IPR006568), Protein of unknown function DUF382 (InterPro:IPR007180); BEST Arabidopsis thaliana protein match is: pliceosome associated protein-related (TAIR:AT1G11520.1). & (reliability: 770.0) & (original description: no original description) 0.8694943731529339 60 evm.model.tig00000821.8 (at1g21900 : 129.0) emp24/gp25L/p24 family/GOLD family protein; FUNCTIONS IN: protein transmembrane transporter activity; INVOLVED IN: intracellular protein transport, transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT1G09580.1); Has 1629 Blast hits to 1627 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 735; Fungi - 476; Plants - 235; Viruses - 0; Other Eukaryotes - 183 (source: NCBI BLink). & (reliability: 240.0) & (original description: no original description) 0.8694051282203171 61 evm.model.tig00021357.40 (at1g16470 : 295.0) Encodes 20S proteasome subunit PAB1 (PAB1).; proteasome subunit PAB1 (PAB1); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to zinc ion, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, cytosolic ribosome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, alpha-subunit, conserved site (InterPro:IPR000426), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT1G79210.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q9lsu2|psa2_orysa : 288.0) Proteasome subunit alpha type 2 (EC 3.4.25.1) (20S proteasome alpha subunit B) (20S proteasome subunit alpha-2) - Oryza sativa (Rice) & (reliability: 590.0) & (original description: no original description) 0.8674865777216664 75 evm.model.tig00021357.2 (at1g08780 : 85.5) ABI3-interacting protein 3 (AIP3); FUNCTIONS IN: unfolded protein binding; INVOLVED IN: protein folding; LOCATED IN: prefoldin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin beta-like (InterPro:IPR002777), Prefoldin, subunit 4 (InterPro:IPR016661); Has 376 Blast hits to 375 proteins in 196 species: Archae - 2; Bacteria - 0; Metazoa - 120; Fungi - 130; Plants - 57; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink). & (reliability: 171.0) & (original description: no original description) 0.8673847891735402 63 evm.model.tig00000704.30 (at2g15430 : 264.0) Non-catalytic subunit of nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB3 and the E. coli RNA polymerase alpha subunit. A closely related paralog, encoded by At2g15400, can substitute for At2g15430 in the context of Pol V.; NRPB3; FUNCTIONS IN: DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: in 6 components; CONTAINS InterPro DOMAIN/s: DNA-directed RNA polymerase, insert domain (InterPro:IPR011262), DNA-directed RNA polymerase, dimerisation (InterPro:IPR011261), DNA-directed RNA polymerase, RpoA/D/Rpb3-type (InterPro:IPR011263), DNA-directed RNA polymerase, 30-40kDa subunit, conserved site (InterPro:IPR001514), DNA-directed RNA polymerase, RBP11-like (InterPro:IPR009025); BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase family protein (TAIR:AT2G15400.1); Has 1362 Blast hits to 1362 proteins in 353 species: Archae - 243; Bacteria - 1; Metazoa - 278; Fungi - 347; Plants - 109; Viruses - 0; Other Eukaryotes - 384 (source: NCBI BLink). & (reliability: 528.0) & (original description: no original description) 0.8665643003704978 99 evm.model.tig00020685.15 no hits & (original description: no original description) 0.8660104856329306 66 evm.model.tig00000663.51 (at2g45640 : 147.0) Involved in the regulation of salt stress. Expression of AtSAP18 is induced by NaCl, cold, drought, ABA, and ethylene treatment. AtSAP18 and HDA19 associate with ERF3 and ERF4 both in vitro and in vivo.; SIN3 associated polypeptide P18 (SAP18); FUNCTIONS IN: protein binding, transcription regulator activity; INVOLVED IN: response to salt stress, response to abscisic acid stimulus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sin3 associated polypeptide p18 (InterPro:IPR010516), Histone deacetylase complex, SAP18 subunit (InterPro:IPR017250). & (reliability: 294.0) & (original description: no original description) 0.8641342778157188 67 evm.model.tig00000367.47 no hits & (original description: no original description) 0.8641331618949056 68 evm.model.tig00000944.19 (at4g30220 : 128.0) small nuclear ribonucleoprotein F (RUXF); FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G14285.1). & (reliability: 256.0) & (original description: no original description) 0.8639699870506613 94 evm.model.tig00000863.20 (at1g52600 : 180.0) Peptidase S24/S26A/S26B/S26C family protein; FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis, signal peptide processing; LOCATED IN: endoplasmic reticulum, plasma membrane, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B, conserved region (InterPro:IPR019759), Peptidase S26B, eukaryotic signal peptidase (InterPro:IPR001733), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927); BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT3G15710.1); Has 958 Blast hits to 958 proteins in 409 species: Archae - 89; Bacteria - 293; Metazoa - 225; Fungi - 153; Plants - 91; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink). & (reliability: 360.0) & (original description: no original description) 0.863220457937646 81 evm.model.tig00021234.43 no hits & (original description: no original description) 0.863029822152117 71 evm.model.tig00000754.14 no hits & (original description: no original description) 0.8626836157157655 72 evm.model.tig00000704.50 no hits & (original description: no original description) 0.8622439990126867 75 evm.model.tig00001415.15 (at2g44610 : 100.0) Encodes a GTP-binding protein with similarity to yeast YPT6 . RAB6 can complement the yeast YTP mutant.; RAB6A; FUNCTIONS IN: protein binding, GTP binding; INVOLVED IN: secretion by cell; LOCATED IN: plasma membrane, membrane fraction; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab6-related (InterPro:IPR015600); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog H1E (TAIR:AT5G10260.1); Has 26612 Blast hits to 26583 proteins in 727 species: Archae - 21; Bacteria - 159; Metazoa - 14143; Fungi - 3598; Plants - 2938; Viruses - 20; Other Eukaryotes - 5733 (source: NCBI BLink). & (p36861|yptv2_volca : 97.1) GTP-binding protein yptV2 - Volvox carteri & (reliability: 200.0) & (original description: no original description) 0.8615356858911303 74 evm.model.tig00021339.23 no hits & (original description: no original description) 0.8597519694750752 77 evm.model.tig00000241.58 no hits & (original description: no original description) 0.859191306787813 78 evm.model.tig00001424.6 no hits & (original description: no original description) 0.859178925313753 90 evm.model.tig00001331.7 no hits & (original description: no original description) 0.8585570571096474 82 evm.model.tig00020554.15 (at1g03140 : 224.0) splicing factor Prp18 family protein; INVOLVED IN: RNA splicing; LOCATED IN: spliceosomal complex; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Pre-mRNA processing factor 4 (PRP4) like (InterPro:IPR014906), Splicing factor motif (InterPro:IPR003648), Prp18 (InterPro:IPR004098); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54590.1); Has 624 Blast hits to 613 proteins in 206 species: Archae - 0; Bacteria - 5; Metazoa - 235; Fungi - 175; Plants - 58; Viruses - 0; Other Eukaryotes - 151 (source: NCBI BLink). & (reliability: 448.0) & (original description: no original description) 0.858332627461938 83 evm.model.tig00020961.139 (at5g50840 : 202.0) CONTAINS InterPro DOMAIN/s: Taxilin (InterPro:IPR019132); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 404.0) & (original description: no original description) 0.8570838761639107 85 evm.model.tig00020904.56 (at5g11900 : 94.4) Translation initiation factor SUI1 family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor SUI1 (InterPro:IPR001950), Density-regulated protein DRP1 (InterPro:IPR005873); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 188.8) & (original description: no original description) 0.8550214246550291 88 evm.model.tig00001604.2 (at1g16240 : 81.6) Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed.; syntaxin of plants 51 (SYP51); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), t-SNARE (InterPro:IPR010989), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 52 (TAIR:AT1G79590.2); Has 550 Blast hits to 550 proteins in 163 species: Archae - 0; Bacteria - 4; Metazoa - 169; Fungi - 163; Plants - 161; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink). & (reliability: 163.2) & (original description: no original description) 0.8546183580189686 87 evm.model.tig00000865.26 no hits & (original description: no original description) 0.8541173108937986 89 evm.model.tig00000692.24 no hits & (original description: no original description) 0.8536369183295752 91 evm.model.tig00000403.42 no hits & (original description: no original description) 0.851333584155641 92 evm.model.tig00001029.17 no hits & (original description: no original description) 0.8507334612314003 94 evm.model.tig00021434.19 no hits & (original description: no original description) 0.850155605605211 95 evm.model.tig00000507.27 no hits & (original description: no original description) 0.8490845078559421 96 evm.model.tig00000042.166 no hits & (original description: no original description) 0.8481776913823685 97 evm.model.tig00000704.26 no hits & (original description: no original description) 0.8474280798325132 99 evm.model.tig00021127.182 (p36862|yptv3_volca : 218.0) GTP-binding protein yptV3 - Volvox carteri & (at1g43890 : 204.0) ras-related small GTPase; RAB GTPASE HOMOLOG B18 (RAB18); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab18 (InterPro:IPR015598); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog C2A (TAIR:AT5G03530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 408.0) & (original description: no original description) 0.847014066330611 100