Sequence Description Alias PCC hrr evm.model.tig00001286.6 (at1g62740 : 376.0) stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to cadmium ion, response to stress; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G12270.1); Has 44605 Blast hits to 18649 proteins in 1479 species: Archae - 1696; Bacteria - 14533; Metazoa - 9820; Fungi - 2891; Plants - 3854; Viruses - 4; Other Eukaryotes - 11807 (source: NCBI BLink). & (q43468|stip_soybn : 317.0) Heat shock protein STI (Stress-inducible protein) (GmSTI) - Glycine max (Soybean) & (reliability: 752.0) & (original description: no original description) 0.9335407660006487 1 evm.model.tig00021348.94 no hits & (original description: no original description) 0.9306792366237115 2 evm.model.tig00000615.78 (at1g29150 : 404.0) specifically interacts with FUS6/COP11 via the C-terminal domain of FUS6/COP11 and associates with an ATPase subunit of the 19S proteasome regulatory complex, AtS6A.; non-ATPase subunit 9 (ATS9); INVOLVED IN: response to cadmium ion, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Proteasome component (PCI) domain (InterPro:IPR000717), PCI/PINT associated module (InterPro:IPR013143); BEST Arabidopsis thaliana protein match is: proteasome family protein (TAIR:AT2G26990.1); Has 870 Blast hits to 851 proteins in 238 species: Archae - 0; Bacteria - 2; Metazoa - 296; Fungi - 224; Plants - 209; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink). & (reliability: 808.0) & (original description: no original description) 0.9254999662062814 11 evm.model.tig00000615.75 (at4g24820 : 445.0) 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, nucleus, plasma membrane, proteasome regulatory particle, lid subcomplex, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717), 26S proteasome, regulatory subunit Rpn7 (InterPro:IPR019585); BEST Arabidopsis thaliana protein match is: 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain (TAIR:AT3G61140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q8w425|psmd6_orysa : 426.0) 26S proteasome non-ATPase regulatory subunit 6 (26S proteasome regulatory particle non-ATPase subunit 7) (OsRPN7) - Oryza sativa (Rice) & (reliability: 890.0) & (original description: no original description) 0.9185607972073052 16 evm.model.tig00020531.50 (at3g49660 : 148.0) Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: G-protein coupled receptor protein signaling pathway; LOCATED IN: chloroplast, heterotrimeric G-protein complex; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 118516 Blast hits to 43755 proteins in 1024 species: Archae - 92; Bacteria - 12360; Metazoa - 47439; Fungi - 25856; Plants - 15887; Viruses - 9; Other Eukaryotes - 16873 (source: NCBI BLink). & (p93107|pf20_chlre : 144.0) Flagellar WD repeat protein PF20 - Chlamydomonas reinhardtii & (reliability: 288.0) & (original description: no original description) 0.9180599165899765 5 evm.model.tig00020614.5 (p93768|psmd3_tobac : 370.0) Probable 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome subunit S3) (Nuclear antigen 21D7) - Nicotiana tabacum (Common tobacco) & (at1g75990 : 352.0) PAM domain (PCI/PINT associated module) protein; FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, plasma membrane, proteasome regulatory particle, lid subcomplex, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717), PCI/PINT associated module (InterPro:IPR013143), 26S proteasome regulatory subunit, C-terminal (InterPro:IPR013586); BEST Arabidopsis thaliana protein match is: PAM domain (PCI/PINT associated module) protein (TAIR:AT1G20200.1); Has 740 Blast hits to 739 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 313; Fungi - 146; Plants - 168; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink). & (reliability: 704.0) & (original description: no original description) 0.9160908945298236 6 evm.model.tig00021348.57 (at5g64760 : 270.0) Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous genes RPN5a.; regulatory particle non-ATPase subunit 5B (RPN5B); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Proteasome component (PCI) domain (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit, putative (RPN5) (TAIR:AT5G09900.2); Has 838 Blast hits to 828 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 302; Fungi - 291; Plants - 115; Viruses - 0; Other Eukaryotes - 130 (source: NCBI BLink). & (reliability: 540.0) & (original description: no original description) 0.9086394878166556 18 evm.model.tig00000704.52 (at2g32920 : 121.0) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.; PDI-like 2-3 (PDIL2-3); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: response to endoplasmic reticulum stress; LOCATED IN: endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 2-2 (TAIR:AT1G04980.1); Has 34824 Blast hits to 18409 proteins in 2879 species: Archae - 382; Bacteria - 17291; Metazoa - 5423; Fungi - 1895; Plants - 2648; Viruses - 40; Other Eukaryotes - 7145 (source: NCBI BLink). & (p38661|pdia6_medsa : 97.4) Probable protein disulfide-isomerase A6 precursor (EC 5.3.4.1) (P5) - Medicago sativa (Alfalfa) & (reliability: 242.0) & (original description: no original description) 0.9086062304032229 22 evm.model.tig00000615.79 (at5g26360 : 697.0) TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, gamma subunit (InterPro:IPR012719), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p54411|tcpe2_avesa : 295.0) T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K36) - Avena sativa (Oat) & (reliability: 1394.0) & (original description: no original description) 0.9049230061681937 12 evm.model.tig00000829.9 (at4g38630 : 209.0) Regulatory particle non-ATPase subunit of the 26S proteasome with multiubiquitin-chain-binding capabilities; regulatory particle non-ATPase 10 (RPN10); FUNCTIONS IN: peptide receptor activity; INVOLVED IN: in 19 processes; LOCATED IN: cytosol, proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ssl1-like (InterPro:IPR007198), Ubiquitin interacting motif (InterPro:IPR003903), von Willebrand factor, type A (InterPro:IPR002035); Has 677 Blast hits to 665 proteins in 240 species: Archae - 0; Bacteria - 16; Metazoa - 271; Fungi - 148; Plants - 120; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). & (reliability: 418.0) & (original description: no original description) 0.9001257999134618 31 evm.model.tig00000157.20 (at3g03960 : 548.0) TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, theta subunit (InterPro:IPR012721); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G18190.1); Has 15495 Blast hits to 15419 proteins in 3442 species: Archae - 801; Bacteria - 7598; Metazoa - 1836; Fungi - 1369; Plants - 680; Viruses - 0; Other Eukaryotes - 3211 (source: NCBI BLink). & (p40412|tcpe1_avesa : 187.0) T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K19) - Avena sativa (Oat) & (reliability: 1096.0) & (original description: no original description) 0.9000059705708601 12 evm.model.tig00021350.16 (at3g20050 : 727.0) Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1).; T-complex protein 1 alpha subunit (TCP-1); FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, alpha subunit (InterPro:IPR012715); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 17155 Blast hits to 17114 proteins in 3594 species: Archae - 808; Bacteria - 7960; Metazoa - 2159; Fungi - 1408; Plants - 801; Viruses - 0; Other Eukaryotes - 4019 (source: NCBI BLink). & (p54411|tcpe2_avesa : 242.0) T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K36) - Avena sativa (Oat) & (reliability: 1454.0) & (original description: no original description) 0.8998402496030116 16 evm.model.tig00020563.190 (at5g46210 : 239.0) Arabidopsis CULLIN4 (CUL4) forms an E3 ubiquitin ligase with the CDD complex and a common catalytic subunit RBX1 in mediating light control of development. This CUL4-based E3 ligase is essential for the repression of photomorphogenesis. The partial loss of CUL4 function resulted in a constitutive photomorphogenic phenotype with respect to morphogenesis and light-regulated gene expression. CUL4 exhibits a synergistic genetic interaction with COP10 and DET1.; cullin4 (CUL4); CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Cullin homology (InterPro:IPR016158), Cullin protein, neddylation domain (InterPro:IPR019559), Cullin, N-terminal (InterPro:IPR001373), Cullin, conserved site (InterPro:IPR016157), Cullin repeat-like-containing domain (InterPro:IPR016159); BEST Arabidopsis thaliana protein match is: cullin 3B (TAIR:AT1G69670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 478.0) & (original description: no original description) 0.8930346507317174 13 evm.model.tig00001336.10 (at2g43160 : 165.0) ENTH/VHS family protein; FUNCTIONS IN: binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epsin, N-terminal (InterPro:IPR001026), Epsin-like, N-terminal (InterPro:IPR013809), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS family protein (TAIR:AT3G59290.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 330.0) & (original description: no original description) 0.8921258375288258 23 evm.model.tig00000545.18 (at1g64520 : 194.0) regulatory particle non-ATPase 12A (RPN12a); FUNCTIONS IN: peptidase activity; INVOLVED IN: in 14 processes; LOCATED IN: proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 26S proteasome non-ATPase regulatory subunit Rpn12 (InterPro:IPR006746), SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: regulatory particle non-ATPase 12B (TAIR:AT5G42040.1); Has 474 Blast hits to 474 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 195; Fungi - 129; Plants - 70; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). & (reliability: 388.0) & (original description: no original description) 0.8901225781313852 29 evm.model.tig00000912.27 (at1g73450 : 451.0) Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G73460.1); Has 91653 Blast hits to 89873 proteins in 2996 species: Archae - 91; Bacteria - 10272; Metazoa - 34556; Fungi - 12029; Plants - 16764; Viruses - 383; Other Eukaryotes - 17558 (source: NCBI BLink). & (q5zci1|mpk10_orysa : 127.0) Mitogen-activated protein kinase 10 (EC 2.7.11.24) (MAP kinase 10) - Oryza sativa (Rice) & (reliability: 902.0) & (original description: no original description) 0.8836823912722375 16 evm.model.tig00000842.25 (at3g18190 : 640.0) TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin TCP-1, conserved site (InterPro:IPR002194), T-complex protein 1, delta subunit (InterPro:IPR012717); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT1G24510.1); Has 19273 Blast hits to 19203 proteins in 3973 species: Archae - 808; Bacteria - 9512; Metazoa - 2051; Fungi - 1477; Plants - 841; Viruses - 2; Other Eukaryotes - 4582 (source: NCBI BLink). & (p40412|tcpe1_avesa : 285.0) T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K19) - Avena sativa (Oat) & (reliability: 1280.0) & (original description: no original description) 0.8831751867923758 17 evm.model.tig00020703.10 (at2g20580 : 598.0) encoding the RPN subunits of the 26S proteasome; 26S proteasome regulatory subunit S2 1A (RPN1A); FUNCTIONS IN: enzyme regulator activity, binding; INVOLVED IN: regulation of cell cycle, protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, plasma membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit (InterPro:IPR016643), Armadillo-type fold (InterPro:IPR016024), Proteasome/cyclosome, regulatory subunit (InterPro:IPR002015); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit S2 1B (TAIR:AT4G28470.1); Has 1002 Blast hits to 968 proteins in 295 species: Archae - 0; Bacteria - 4; Metazoa - 376; Fungi - 294; Plants - 141; Viruses - 0; Other Eukaryotes - 187 (source: NCBI BLink). & (reliability: 1196.0) & (original description: no original description) 0.8821708454933777 18 evm.model.tig00021312.50 (at5g37370 : 136.0) encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.; ATSRL1; FUNCTIONS IN: binding; INVOLVED IN: response to salt stress, RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: PRP38 (InterPro:IPR005037). & (reliability: 272.0) & (original description: no original description) 0.8805169632463169 31 evm.model.tig00020554.157 (at1g51710 : 330.0) Ubiquitin-specific protease 6 (UBP6). Deubiquinating enzyme. Interacts with calmodulin.; ubiquitin-specific protease 6 (UBP6); CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 7 (TAIR:AT3G21280.1); Has 4803 Blast hits to 4486 proteins in 237 species: Archae - 0; Bacteria - 0; Metazoa - 2534; Fungi - 849; Plants - 654; Viruses - 2; Other Eukaryotes - 764 (source: NCBI BLink). & (reliability: 660.0) & (original description: no original description) 0.8783257802945613 20 evm.model.tig00000203.11 (at5g66680 : 405.0) Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for the transfer in the ER of the N-linked glycan precursor onto Asn residues of candidate proteins.; DEFECTIVE GLYCOSYLATION (DGL1); FUNCTIONS IN: dolichyl-diphosphooligosaccharide-protein glycotransferase activity; INVOLVED IN: plant-type cell wall organization, protein amino acid N-linked glycosylation via asparagine, unidimensional cell growth; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit (InterPro:IPR005013); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 810.0) & (original description: no original description) 0.8770034774973929 21 evm.model.tig00020830.57 (at4g33060 : 257.0) Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: cyclophilin71 (TAIR:AT3G44600.1); Has 24116 Blast hits to 22276 proteins in 2786 species: Archae - 119; Bacteria - 7703; Metazoa - 5717; Fungi - 2149; Plants - 1502; Viruses - 35; Other Eukaryotes - 6891 (source: NCBI BLink). & (reliability: 514.0) & (original description: no original description) 0.8682224907850633 22 evm.model.tig00020930.28 (at2g34040 : 183.0) Apoptosis inhibitory protein 5 (API5); FUNCTIONS IN: binding; INVOLVED IN: anti-apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Apoptosis inhibitory 5 (InterPro:IPR008383), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Apoptosis inhibitory protein 5 (API5) (TAIR:AT1G29030.1); Has 227 Blast hits to 217 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 6; Plants - 61; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). & (reliability: 366.0) & (original description: no original description) 0.867825497378905 47 evm.model.tig00000789.37 (at3g02530 : 621.0) TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: response to cadmium ion, response to zinc ion; LOCATED IN: membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, zeta subunit (InterPro:IPR012722), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT5G16070.1); Has 18475 Blast hits to 17833 proteins in 3650 species: Archae - 805; Bacteria - 8777; Metazoa - 2106; Fungi - 1471; Plants - 861; Viruses - 0; Other Eukaryotes - 4455 (source: NCBI BLink). & (p54411|tcpe2_avesa : 169.0) T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K36) - Avena sativa (Oat) & (reliability: 1242.0) & (original description: no original description) 0.8669379011475981 39 evm.model.tig00001371.8 (at3g11830 : 686.0) TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), T-complex protein 1, eta subunit (InterPro:IPR012720), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: T-complex protein 1 alpha subunit (TAIR:AT3G20050.1). & (p40412|tcpe1_avesa : 226.0) T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K19) - Avena sativa (Oat) & (reliability: 1372.0) & (original description: no original description) 0.8612544416356684 36 evm.model.tig00001042.6 (at4g29040 : 713.0) 26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA,; regulatory particle AAA-ATPase 2A (RPT2a); FUNCTIONS IN: ATPase activity; INVOLVED IN: in 17 processes; LOCATED IN: proteasome regulatory particle, base subcomplex, proteasome complex, nucleus, membrane; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), 26S proteasome subunit P45 (InterPro:IPR005937); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT2G20140.1); Has 31112 Blast hits to 28760 proteins in 3112 species: Archae - 1431; Bacteria - 10308; Metazoa - 4877; Fungi - 3744; Plants - 3214; Viruses - 41; Other Eukaryotes - 7497 (source: NCBI BLink). & (p46466|prs4_orysa : 696.0) 26S protease regulatory subunit 4 homolog (TAT-binding protein homolog 2) - Oryza sativa (Rice) & (reliability: 1426.0) & (original description: no original description) 0.8608712438306516 76 evm.model.tig00020610.20 (p49661|copd_orysa : 166.0) Coatomer subunit delta (Delta-coat protein) (Delta-COP) (Archain) - Oryza sativa (Rice) & (at5g05010 : 164.0) clathrin adaptor complexes medium subunit family protein; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Longin-like (InterPro:IPR011012); Has 717 Blast hits to 709 proteins in 223 species: Archae - 0; Bacteria - 2; Metazoa - 237; Fungi - 248; Plants - 88; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink). & (reliability: 328.0) & (original description: no original description) 0.8598932219961526 80 evm.model.tig00000144.166 (at3g12380 : 184.0) Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP gene family.; actin-related protein 5 (ARP5); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: Actin-like ATPase superfamily protein (TAIR:AT2G42100.1). & (p02581|act1_soybn : 93.6) Actin-1 - Glycine max (Soybean) & (reliability: 368.0) & (original description: no original description) 0.8597508239747519 33 evm.model.tig00020554.80 (at4g14800 : 210.0) Encodes 20S proteasome beta subunit PBD2 (PBD2).; 20S proteasome beta subunit D2 (PBD2); FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to cadmium ion, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit D1 (TAIR:AT3G22630.1). & (q9lst6|psb2_orysa : 199.0) Proteasome subunit beta type 2 (EC 3.4.25.1) (20S proteasome alpha subunit D) (20S proteasome subunit beta-4) - Oryza sativa (Rice) & (reliability: 420.0) & (original description: no original description) 0.8581552888403233 93 evm.model.tig00021037.27 no hits & (original description: no original description) 0.8578561514232844 79 evm.model.tig00021537.5 no hits & (original description: no original description) 0.8575347347356854 31 evm.model.tig00021168.13 (at5g46630 : 357.0) clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family; similar to micro-adaptins of clathrin coated vesicle adaptor complexes; Clathrin adaptor complexes medium subunit family protein; INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Clathrin coat associated protein AP-50 (InterPro:IPR015629), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complexes medium subunit family protein (TAIR:AT1G60780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 714.0) & (original description: no original description) 0.8549132928933035 38 evm.model.tig00020553.156 (at4g31480 : 943.0) Coatomer, beta subunit; FUNCTIONS IN: clathrin binding, structural molecule activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane coat, COPI vesicle coat; EXPRESSED IN: male gametophyte, guard cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Coatomer, beta subunit, C-terminal (InterPro:IPR011710), Armadillo-like helical (InterPro:IPR011989), Coatomer, beta subunit (InterPro:IPR016460), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Coatomer, beta subunit (TAIR:AT4G31490.1). & (reliability: 1886.0) & (original description: no original description) 0.8542513528645912 35 evm.model.tig00020554.44 (o24361|psb5_spiol : 306.0) Proteasome subunit beta type 5 precursor (EC 3.4.25.1) (20S proteasome subunit E) (Proteasome epsilon chain) - Spinacia oleracea (Spinach) & (at3g26340 : 298.0) N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; FUNCTIONS IN: endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: proteolysis involved in cellular protein catabolic process, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex; EXPRESSED IN: guard cell; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit E1 (TAIR:AT1G13060.1); Has 6541 Blast hits to 6534 proteins in 612 species: Archae - 835; Bacteria - 512; Metazoa - 2083; Fungi - 1372; Plants - 865; Viruses - 0; Other Eukaryotes - 874 (source: NCBI BLink). & (reliability: 596.0) & (original description: no original description) 0.8523828375430953 47 evm.model.tig00020553.163 (at3g16060 : 454.0) ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G16630.2); Has 9813 Blast hits to 9533 proteins in 306 species: Archae - 0; Bacteria - 4; Metazoa - 4228; Fungi - 1343; Plants - 1851; Viruses - 0; Other Eukaryotes - 2387 (source: NCBI BLink). & (o23826|k125_tobac : 175.0) 125 kDa kinesin-related protein - Nicotiana tabacum (Common tobacco) & (reliability: 908.0) & (original description: no original description) 0.851789123251984 83 evm.model.tig00001098.5 (at4g31300 : 209.0) Encodes 20S proteasome subunit PBA1 (PBA1).; PBA1; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to zinc ion, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome, subunit alpha/beta (InterPro:IPR001353), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243); BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit PBB2 (TAIR:AT5G40580.2). & (p93395|psb6_tobac : 206.0) Proteasome subunit beta type 6 precursor (EC 3.4.25.1) (Proteasome delta chain) (Tobacco cryptogein-induced protein 7) (tcI 7) - Nicotiana tabacum (Common tobacco) & (reliability: 418.0) & (original description: no original description) 0.851773499226853 95 evm.model.tig00020903.30 (at5g20890 : 645.0) TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: unfolded protein binding, ATP binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: anchored to plasma membrane, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, beta subunit (InterPro:IPR012716), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G11830.1); Has 19831 Blast hits to 19435 proteins in 3922 species: Archae - 807; Bacteria - 9602; Metazoa - 2181; Fungi - 1427; Plants - 861; Viruses - 0; Other Eukaryotes - 4953 (source: NCBI BLink). & (p54411|tcpe2_avesa : 246.0) T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K36) - Avena sativa (Oat) & (reliability: 1290.0) & (original description: no original description) 0.8483812277314864 62 evm.model.tig00000829.3 (at3g44340 : 410.0) homologous to yeast and animal Sec24 proteins; expression in yeast cells enhances their survival under oxidative stress conditions.; clone eighty-four (CEF); FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: response to oxidative stress, vesicle-mediated transport; LOCATED IN: COPII vesicle coat, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT4G32640.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 820.0) & (original description: no original description) 0.8483789298442626 40 evm.model.tig00000571.47 (at1g24510 : 734.0) TCP-1/cpn60 chaperonin family protein; FUNCTIONS IN: protein binding; INVOLVED IN: protein folding, cellular protein metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperone, tailless complex polypeptide 1 (InterPro:IPR017998), T-complex protein 1, epsilon subunit (InterPro:IPR012718), Chaperonin TCP-1, conserved site (InterPro:IPR002194); BEST Arabidopsis thaliana protein match is: TCP-1/cpn60 chaperonin family protein (TAIR:AT3G18190.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p40412|tcpe1_avesa : 721.0) T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K19) - Avena sativa (Oat) & (reliability: 1468.0) & (original description: no original description) 0.8435541316069014 76 evm.model.tig00001229.23 (at1g80350 : 151.0) encodes a p60 katanin protein that is expressed throughout the plant. Required for the specification of cell fates from early in development (in the meristem) through differentiation and for normal postmitotic organization of cortical microtubules into transverse arrays in root epidermis cells. Mutants display cytoskeletal defects.; ECTOPIC ROOT HAIR 3 (ERH3); FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: trichome branching, cortical microtubule organization, multidimensional cell growth, plant-type cell wall biogenesis, microtubule cytoskeleton organization; LOCATED IN: katanin complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960), Vps4 oligomerisation, C-terminal (InterPro:IPR015415); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G34560.1); Has 31677 Blast hits to 29370 proteins in 3124 species: Archae - 1478; Bacteria - 12054; Metazoa - 4742; Fungi - 3292; Plants - 2928; Viruses - 23; Other Eukaryotes - 7160 (source: NCBI BLink). & (reliability: 302.0) & (original description: no original description) 0.8410988023754067 44 evm.model.tig00000480.60 (q43582|lsm4_tobac : 154.0) Probable U6 snRNA-associated Sm-like protein LSm4 (Glycine-rich protein 10) (GRP 10) - Nicotiana tabacum (Common tobacco) & (at5g27720 : 151.0) embryo defective 1644 (emb1644); CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649); BEST Arabidopsis thaliana protein match is: snRNP core protein SMD3 (TAIR:AT1G76300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 302.0) & (original description: no original description) 0.8407574850782578 46 evm.model.tig00021181.5 (at1g60780 : 570.0) HAPLESS 13 (HAP13); INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complexes medium subunit family protein (TAIR:AT1G10730.1); Has 2206 Blast hits to 2139 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 1107; Fungi - 506; Plants - 213; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink). & (reliability: 1140.0) & (original description: no original description) 0.8396670181851185 47 evm.model.tig00000711.5 (at1g78070 : 428.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G36070.1); Has 25796 Blast hits to 12397 proteins in 585 species: Archae - 64; Bacteria - 7254; Metazoa - 7661; Fungi - 5235; Plants - 2447; Viruses - 0; Other Eukaryotes - 3135 (source: NCBI BLink). & (reliability: 846.0) & (original description: no original description) 0.8375766115634056 48 evm.model.tig00020904.55 (at1g76400 : 327.0) Ribophorin I; FUNCTIONS IN: oligosaccharyl transferase activity, dolichyl-diphosphooligosaccharide-protein glycotransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribophorin I (InterPro:IPR007676); BEST Arabidopsis thaliana protein match is: Ribophorin I (TAIR:AT2G01720.1); Has 398 Blast hits to 398 proteins in 180 species: Archae - 2; Bacteria - 2; Metazoa - 149; Fungi - 127; Plants - 63; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). & (reliability: 654.0) & (original description: no original description) 0.8353268550367176 49 evm.model.tig00001038.3 (at2g47470 : 270.0) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response.; UNFERTILIZED EMBRYO SAC 5 (UNE5); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: response to endoplasmic reticulum stress, double fertilization forming a zygote and endosperm, embryo sac development, pollen tube development, embryo development ending in seed dormancy; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Disulphide isomerase (InterPro:IPR005788), Thioredoxin domain (InterPro:IPR013766), Endoplasmic reticulum, protein ERp29, C-terminal (InterPro:IPR011679), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: PDI-like 2-2 (TAIR:AT1G04980.1); Has 37639 Blast hits to 19288 proteins in 2969 species: Archae - 403; Bacteria - 17566; Metazoa - 6414; Fungi - 2106; Plants - 3416; Viruses - 32; Other Eukaryotes - 7702 (source: NCBI BLink). & (p38661|pdia6_medsa : 270.0) Probable protein disulfide-isomerase A6 precursor (EC 5.3.4.1) (P5) - Medicago sativa (Alfalfa) & (reliability: 540.0) & (original description: no original description) 0.8332593564200473 50 evm.model.tig00000350.28 (at5g67630 : 587.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: DNA helicase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TIP49, C-terminal (InterPro:IPR010339), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G49830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1174.0) & (original description: no original description) 0.8331943670749407 51 evm.model.tig00021168.12 (at5g56280 : 89.4) one of two genes encoding subunit 6 of COP9 signalosome complex. Protein contains a MPR1p and PAD1p N-terminal (MPN) domain at the N-terminal region and belongs to the Mov34 superfamily. Mutant and antisense expression result in a number of developmental defects and in ubiquitin/proteasome-mediated protein degradation.; COP9 signalosome subunit 6A (CSN6A); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: COP9 signalosome subunit 6B (TAIR:AT4G26430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 178.8) & (original description: no original description) 0.8321182656833819 71 evm.model.tig00000144.149 (at4g04950 : 143.0) thioredoxin family protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Glutaredoxin-related protein (InterPro:IPR004480); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT4G32580.1); Has 26535 Blast hits to 17137 proteins in 2757 species: Archae - 249; Bacteria - 14010; Metazoa - 1647; Fungi - 1426; Plants - 1759; Viruses - 3; Other Eukaryotes - 7441 (source: NCBI BLink). & (reliability: 286.0) & (original description: no original description) 0.8307408449410114 54 evm.model.tig00020902.32 (at2g42810 : 488.0) Encodes a phytochrome-specific type 5 serine/threonine protein phosphatase. It dephosphorylates active Pfr-phytochromes. Controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. The gene is alternately spliced. This variant is an integral membrane protein localized to the ER and nuclear envelope.; protein phosphatase 5.2 (PP5.2); FUNCTIONS IN: protein binding, phosphoprotein phosphatase activity, protein serine/threonine phosphatase activity; INVOLVED IN: response to cadmium ion, nucleocytoplasmic transport, red or far-red light signaling pathway; LOCATED IN: nuclear envelope, integral to endoplasmic reticulum membrane, nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Metallophosphoesterase (InterPro:IPR004843), Protein phosphatase 5 (InterPro:IPR011236), Tetratricopeptide-like helical (InterPro:IPR011990), Serine/threonine phosphatase, PPP5 (InterPro:IPR013235), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: Calcineurin-like metallo-phosphoesterase superfamily protein (TAIR:AT5G27840.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p48579|pp2a_helan : 174.0) Serine/threonine-protein phosphatase PP2A catalytic subunit (EC 3.1.3.16) - Helianthus annuus (Common sunflower) & (reliability: 976.0) & (original description: no original description) 0.8301637085462776 69 evm.model.tig00000404.42 (at5g40770 : 323.0) prohibitin 3; prohibitin 3 (PHB3); INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Prohibitin (InterPro:IPR000163), Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: prohibitin 4 (TAIR:AT3G27280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 646.0) & (original description: no original description) 0.8287381601097273 59 evm.model.tig00021127.22 (at3g18940 : 95.9) clast3-related; CONTAINS InterPro DOMAIN/s: Proteasome assembly chaperone 2, eukaryotic (InterPro:IPR016562), Proteasome assembly chaperone 2 (InterPro:IPR019151); Has 249 Blast hits to 248 proteins in 114 species: Archae - 1; Bacteria - 0; Metazoa - 124; Fungi - 51; Plants - 58; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). & (reliability: 191.8) & (original description: no original description) 0.8283278828742713 60 evm.model.tig00020554.138 (at1g07705 : 132.0) NOT2 / NOT3 / NOT5 family; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282); BEST Arabidopsis thaliana protein match is: VIRE2 interacting protein 2 (TAIR:AT5G59710.1); Has 3259 Blast hits to 2610 proteins in 429 species: Archae - 0; Bacteria - 983; Metazoa - 821; Fungi - 441; Plants - 185; Viruses - 8; Other Eukaryotes - 821 (source: NCBI BLink). & (reliability: 264.0) & (original description: no original description) 0.8278105474157476 94 evm.model.tig00020703.19 (at1g50200 : 1004.0) Alanyl-tRNA synthetase (ALATS); FUNCTIONS IN: alanine-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, nucleotide binding, ATP binding, nucleic acid binding; INVOLVED IN: alanyl-tRNA aminoacylation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alanyl-tRNA synthetase, class IIc (InterPro:IPR002318), Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain (InterPro:IPR018163), Alanyl-tRNA synthetase, class IIc, anti-codon-binding domain (InterPro:IPR018162), Alanyl-tRNA synthetase, class IIc, core domain (InterPro:IPR018165), Threonyl/alanyl tRNA synthetase, SAD (InterPro:IPR012947), Alanyl-tRNA synthetase, class IIc, N-terminal (InterPro:IPR018164), Phosphoesterase, DHHA1 (InterPro:IPR003156); BEST Arabidopsis thaliana protein match is: Alanyl-tRNA synthetase, class IIc (TAIR:AT5G22800.1). & (reliability: 2008.0) & (original description: no original description) 0.8263048246684551 64 evm.model.tig00000829.14 (at3g25150 : 120.0) Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT5G60980.2). & (reliability: 240.0) & (original description: no original description) 0.8255335851666312 65 evm.model.tig00000169.18 (at1g55250 : 113.0) Encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B.; histone mono-ubiquitination 2 (HUB2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: histone mono-ubiquitination 1 (TAIR:AT2G44950.1). & (reliability: 226.0) & (original description: no original description) 0.8251009458629265 90 evm.model.tig00021433.26 (at2g26430 : 218.0) Encodes an ania-6a type arginine-rich cyclin which confers tolerance to LiCl and NaCl when expressed in yeast.; arginine-rich cyclin 1 (RCY1); FUNCTIONS IN: cyclin-dependent protein kinase regulator activity; INVOLVED IN: response to salt stress, regulation of cell cycle, regulation of transcription; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin L (InterPro:IPR017060), Cyclin-like (InterPro:IPR011028), Transcription regulator cyclin (InterPro:IPR015429), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G45190.1); Has 13929 Blast hits to 7818 proteins in 361 species: Archae - 16; Bacteria - 504; Metazoa - 7801; Fungi - 1963; Plants - 1370; Viruses - 16; Other Eukaryotes - 2259 (source: NCBI BLink). & (reliability: 436.0) & (original description: no original description) 0.8249572252834982 68 evm.model.tig00000053.10 no hits & (original description: no original description) 0.8230404319760191 74 evm.model.tig00000865.6 (at2g44100 : 248.0) GDP dissociation inhibitor involved in vesicular membrane traffic; guanosine nucleotide diphosphate dissociation inhibitor 1 (GDI1); CONTAINS InterPro DOMAIN/s: Rab GTPase activator (InterPro:IPR002005), GDP dissociation inhibitor (InterPro:IPR018203), Rab GDI protein (InterPro:IPR000806); BEST Arabidopsis thaliana protein match is: RAB GDP dissociation inhibitor 2 (TAIR:AT3G59920.1); Has 1320 Blast hits to 1214 proteins in 252 species: Archae - 2; Bacteria - 0; Metazoa - 653; Fungi - 281; Plants - 182; Viruses - 0; Other Eukaryotes - 202 (source: NCBI BLink). & (reliability: 496.0) & (original description: no original description) 0.8208180163553355 74 evm.model.tig00001527.11 (q39817|calx_soybn : 245.0) Calnexin homolog precursor - Glycine max (Soybean) & (at5g61790 : 243.0) calnexin 1 (CNX1); FUNCTIONS IN: unfolded protein binding, calcium ion binding; INVOLVED IN: protein folding; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Calreticulin/calnexin, P (InterPro:IPR009033), Calreticulin/calnexin (InterPro:IPR001580), Calreticulin/calnexin, conserved site (InterPro:IPR018124), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320); BEST Arabidopsis thaliana protein match is: Calreticulin family protein (TAIR:AT5G07340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 486.0) & (original description: no original description) 0.8202042426821387 76 evm.model.tig00020563.86 (at5g50920 : 990.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p35100|clpc_pea : 984.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (reliability: 1980.0) & (original description: no original description) 0.8193375126515203 78 evm.model.tig00000498.60 no hits & (original description: no original description) 0.8183281713902026 79 evm.model.tig00001042.31 (at1g53720 : 309.0) Encodes a cyclophilin, member of a family modular proteins consisting of a peptidyl-prolyl cisñ trans isomerase (PPIase) domain, followed by an RNA recognition motif (RRM), and a C-terminal domain enriched in charged amino acids. Interacts with with SCL33/SR33 and with a majority of Arabidopsis SR proteins and the largest subunit of RNA polymerase II. Localizes to the nucleus, but it does not significantly colocalize with SR proteins in nuclear speckles.; cyclophilin 59 (CYP59); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity, RNA binding, nucleic acid binding; INVOLVED IN: protein folding; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (TAIR:AT1G53780.2); Has 61647 Blast hits to 39757 proteins in 2942 species: Archae - 163; Bacteria - 9741; Metazoa - 25019; Fungi - 7217; Plants - 5688; Viruses - 226; Other Eukaryotes - 13593 (source: NCBI BLink). & (reliability: 618.0) & (original description: no original description) 0.8168048297186564 86 evm.model.tig00020554.128 (at4g17890 : 144.0) A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.; ARF-GAP domain 8 (AGD8); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 9 (TAIR:AT5G46750.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 288.0) & (original description: no original description) 0.8152847828708805 93 evm.model.tig00021435.13 (at2g26990 : 239.0) Represses photomorphogenesis and induces skotomorphogenesis in the dark.; FUSCA 12 (FUS12); INVOLVED IN: cullin deneddylation, photomorphogenesis, protein catabolic process; LOCATED IN: signalosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717), PCI/PINT associated module (InterPro:IPR013143); BEST Arabidopsis thaliana protein match is: non-ATPase subunit 9 (TAIR:AT1G29150.1); Has 881 Blast hits to 877 proteins in 239 species: Archae - 2; Bacteria - 9; Metazoa - 323; Fungi - 235; Plants - 190; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). & (reliability: 478.0) & (original description: no original description) 0.8140953148467567 86 evm.model.tig00000144.119 no hits & (original description: no original description) 0.8132877386374319 88 evm.model.tig00020572.40 no hits & (original description: no original description) 0.8122030383569412 90 evm.model.tig00020848.76 no hits & (original description: no original description) 0.8109852090155918 91 evm.model.tig00000704.28 no hits & (original description: no original description) 0.8074566966894434 100 evm.model.tig00020848.70 (at3g43610 : 107.0) Spc97 / Spc98 family of spindle pole body (SBP) component; FUNCTIONS IN: tubulin binding; INVOLVED IN: microtubule cytoskeleton organization; LOCATED IN: chloroplast, spindle pole, microtubule organizing center; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: spindle pole body component 98 (TAIR:AT5G06680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 214.0) & (original description: no original description) 0.8068562466060952 96 evm.model.tig00020851.9 no hits & (original description: no original description) 0.8050077199784362 97 evm.model.tig00021357.3 no hits & (original description: no original description) 0.8039901754049794 99