Sequence Description Alias PCC hrr evm.model.tig00020554.159 no hits & (original description: no original description) 0.9421053785953369 17 evm.model.tig00000451.7 no hits & (original description: no original description) 0.936723889553355 32 evm.model.tig00001128.2 (at4g25350 : 168.0) SHB1 encodes a nuclear and cytosolic protein that has motifs homologous with SYG1 protein family members. Acts in cryptochrome signaling. Overexpression of SHB1 enhanced the expression of PHYTOCHROME-INTERACTING FACTOR4 (PIF4) under red light and promoted proteasome-mediated degradation of phytochrome A and hypocotyl elongation under far-red light. A knockout allele suppressed LONG HYPOCOTYL IN FAR-RED LIGHT1 (HFR1) expression and showed several deetiolation phenotypes. Acts upstream of HFR1. Regulates seed development.; SHORT HYPOCOTYL UNDER BLUE1 (SHB1); CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: EXS (ERD1/XPR1/SYG1) family protein (TAIR:AT1G35350.1); Has 1169 Blast hits to 1111 proteins in 205 species: Archae - 2; Bacteria - 6; Metazoa - 265; Fungi - 425; Plants - 309; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink). & (reliability: 336.0) & (original description: no original description) 0.93278267502435 16 evm.model.tig00021534.7 no hits & (original description: no original description) 0.9325782731395305 17 evm.model.tig00000498.98 no hits & (original description: no original description) 0.9307458005000554 6 evm.model.tig00020629.29 no hits & (original description: no original description) 0.929856509785167 6 evm.model.tig00001130.11 no hits & (original description: no original description) 0.9282996180241775 43 evm.model.tig00000189.40 no hits & (original description: no original description) 0.9240545549640035 23 evm.model.tig00000498.31 (at5g17850 : 82.8) Sodium/calcium exchanger family protein; FUNCTIONS IN: cation:cation antiporter activity, calcium:sodium antiporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837); BEST Arabidopsis thaliana protein match is: calcium exchanger 7 (TAIR:AT5G17860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 165.6) & (original description: no original description) 0.9239611935741707 22 evm.model.tig00021293.13 no hits & (original description: no original description) 0.9233893433438269 11 evm.model.tig00000241.175 (at1g75660 : 257.0) Encodes a protein with similarity to yeast 5'-3'exonucleases and can functionally complement the yeast mutations. In Arabidopsis XRN3 acts as a suppressor of posttranscriptional gene silencing. Mutants accumulate excised miRNA products suggesting that XRN3 is involved in degradation of these products.; 5'-3' exoribonuclease 3 (XRN3); CONTAINS InterPro DOMAIN/s: 5'-3' exoribonuclease 2 (InterPro:IPR017151), Zinc finger, CCHC-type (InterPro:IPR001878), Putative 5-3 exonuclease (InterPro:IPR004859); BEST Arabidopsis thaliana protein match is: exoribonuclease 2 (TAIR:AT5G42540.1); Has 4264 Blast hits to 3505 proteins in 442 species: Archae - 2; Bacteria - 295; Metazoa - 1361; Fungi - 725; Plants - 751; Viruses - 31; Other Eukaryotes - 1099 (source: NCBI BLink). & (reliability: 514.0) & (original description: no original description) 0.9232664860626728 30 evm.model.tig00000254.91 no hits & (original description: no original description) 0.9227353338719118 13 evm.model.tig00021462.25 no hits & (original description: no original description) 0.9220114508154212 49 evm.model.tig00001292.23 no hits & (original description: no original description) 0.920682413412316 34 evm.model.tig00000769.11 no hits & (original description: no original description) 0.9202565299922202 27 evm.model.tig00020848.40 no hits & (original description: no original description) 0.9169901332650168 20 evm.model.tig00021246.9 no hits & (original description: no original description) 0.9166552282385023 19 evm.model.tig00020908.14 no hits & (original description: no original description) 0.9159961444631615 62 evm.model.tig00020660.23 (at4g10180 : 270.0) Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling.; DE-ETIOLATED 1 (DET1); FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, negative regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: De-etiolated protein 1, Det1 (InterPro:IPR019138), Six-hairpin glycosidase-like (InterPro:IPR008928); Has 248 Blast hits to 240 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). & (reliability: 540.0) & (original description: no original description) 0.9158021229665879 44 evm.model.tig00000870.4 (at5g07910 : 95.9) Leucine-rich repeat (LRR) family protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30105.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 184.8) & (original description: no original description) 0.915781685594782 89 evm.model.tig00000042.36 no hits & (original description: no original description) 0.9144352659117395 98 evm.model.tig00020557.24 no hits & (original description: no original description) 0.9136002625368508 34 evm.model.tig00000042.26 no hits & (original description: no original description) 0.9132100817864286 35 evm.model.tig00020563.17 no hits & (original description: no original description) 0.9128734172241987 26 evm.model.tig00000215.22 (q6eu10|mta70_orysa : 369.0) Probable N6-adenosine-methyltransferase MT-A70-like (EC 2.1.1.62) - Oryza sativa (Rice) & (at4g10760 : 368.0) mRNAadenosine methylase (MTA); FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity; INVOLVED IN: embryo development ending in seed dormancy, mRNA methylation; LOCATED IN: nuclear speck, chloroplast; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MT-A70 (InterPro:IPR007757); BEST Arabidopsis thaliana protein match is: Methyltransferase MT-A70 family protein (TAIR:AT4G09980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 736.0) & (original description: no original description) 0.9123066684510812 54 evm.model.tig00020553.68 (at5g40200 : 238.0) Encodes a putative DegP protease.; DegP protease 9 (DegP9); FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DEGP protease 2 (TAIR:AT2G47940.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 476.0) & (original description: no original description) 0.9122141104106756 61 evm.model.tig00000204.49 no hits & (original description: no original description) 0.9109058455465582 39 evm.model.tig00000093.6 (at1g66750 : 206.0) CDK-activating kinase 4 (CAK4); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, kinase activity; INVOLVED IN: regulation of cyclin-dependent protein kinase activity; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase D1;1 (TAIR:AT1G73690.1); Has 124001 Blast hits to 122583 proteins in 4490 species: Archae - 94; Bacteria - 13930; Metazoa - 46186; Fungi - 12564; Plants - 30685; Viruses - 410; Other Eukaryotes - 20132 (source: NCBI BLink). & (p29620|kc47_orysa : 200.0) CDC2+/CDC28-related protein kinase R2 (EC 2.7.11.22) - Oryza sativa (Rice) & (reliability: 412.0) & (original description: no original description) 0.9100753557837614 33 evm.model.tig00021603.8 (at4g29880 : 96.3) Encodes PIRL7, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.; plant intracellular ras group-related LRR 7 (PIRL7); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 6 (TAIR:AT2G19330.1); Has 62582 Blast hits to 28443 proteins in 1064 species: Archae - 25; Bacteria - 6458; Metazoa - 27380; Fungi - 2135; Plants - 22921; Viruses - 26; Other Eukaryotes - 3637 (source: NCBI BLink). & (reliability: 176.4) & (original description: no original description) 0.9097115148035219 95 evm.model.tig00021037.6 (at5g45680 : 109.0) Peptidyl-Prolyl Isomerase located in chloroplast thylakoid lumen; FK506-binding protein 13 (FKBP13); FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FK506-binding protein 16-2 (TAIR:AT4G39710.1); Has 10267 Blast hits to 9756 proteins in 1768 species: Archae - 130; Bacteria - 5575; Metazoa - 1746; Fungi - 494; Plants - 780; Viruses - 0; Other Eukaryotes - 1542 (source: NCBI BLink). & (q43207|fkb70_wheat : 90.5) 70 kDa peptidyl-prolyl isomerase (EC 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) - Triticum aestivum (Wheat) & (reliability: 218.0) & (original description: no original description) 0.9094454058742737 35 evm.model.tig00021127.70 (at5g39040 : 163.0) Encodes a member of TAP subfamily of ABC transporters that is located in the vacuole. Mutants are hypersensitive to aluminum and the gene product may be important for intracellular movement of some substrate, possibly chelated Al, as part of a mechanism of aluminum sequestration.; transporter associated with antigen processing protein 2 (TAP2); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: response to aluminum ion; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 11 (TAIR:AT1G02520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q6yuu5|mdr_orysa : 150.0) Putative multidrug resistance protein (P-glycoprotein) - Oryza sativa (Rice) & (reliability: 326.0) & (original description: no original description) 0.9090519916273954 36 evm.model.tig00000444.4 no hits & (original description: no original description) 0.9086128406823815 37 evm.model.tig00020909.10 no hits & (original description: no original description) 0.9085789602981604 39 evm.model.tig00000254.130 no hits & (original description: no original description) 0.9055747915528697 50 evm.model.tig00001253.6 no hits & (original description: no original description) 0.9052168049009904 44 evm.model.tig00001336.18 (at2g17700 : 87.0) ACT-like protein tyrosine kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation, metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Amino acid-binding ACT (InterPro:IPR002912), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-like, ATMRK (InterPro:IPR015783), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ACT-like protein tyrosine kinase family protein (TAIR:AT4G35780.1); Has 131925 Blast hits to 129768 proteins in 5057 species: Archae - 139; Bacteria - 14109; Metazoa - 50800; Fungi - 11992; Plants - 33819; Viruses - 503; Other Eukaryotes - 20563 (source: NCBI BLink). & (reliability: 174.0) & (original description: no original description) 0.9046018153716834 69 evm.model.tig00001477.3 no hits & (original description: no original description) 0.9023668575771839 51 evm.model.tig00020553.208 no hits & (original description: no original description) 0.901940867366787 53 evm.model.tig00000331.2 no hits & (original description: no original description) 0.9018734894571833 54 evm.model.tig00000507.24 no hits & (original description: no original description) 0.9013053379507268 95 evm.model.tig00001093.23 no hits & (original description: no original description) 0.9005939483180171 59 evm.model.tig00020560.13 no hits & (original description: no original description) 0.8995967316449663 60 evm.model.tig00001302.11 no hits & (original description: no original description) 0.8991033307553828 62 evm.model.tig00000802.49 no hits & (original description: no original description) 0.8990672996664089 64 evm.model.tig00000382.43 no hits & (original description: no original description) 0.8990493708186608 93 evm.model.tig00000310.58 no hits & (original description: no original description) 0.8987715112757431 66 evm.model.tig00020537.4 no hits & (original description: no original description) 0.8987668848535879 98 evm.model.tig00021137.18 no hits & (original description: no original description) 0.8987197425674345 100 evm.model.tig00000131.7 (at5g35750 : 89.7) Encodes histidine kinase AHK2.; histidine kinase 2 (HK2); FUNCTIONS IN: osmosensor activity, cytokinin receptor activity, protein histidine kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CHASE (InterPro:IPR006189), Signal transduction histidine kinase, core (InterPro:IPR005467), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: histidine kinase 3 (TAIR:AT1G27320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 179.4) & (original description: no original description) 0.8983658906532449 70 evm.model.tig00000692.66 no hits & (original description: no original description) 0.8973725121179064 72 evm.model.tig00000189.39 no hits & (original description: no original description) 0.897233396342076 73 evm.model.tig00000147.51 no hits & (original description: no original description) 0.8971091019802054 75 evm.model.tig00020849.39 no hits & (original description: no original description) 0.8965603363461603 79 evm.model.tig00000870.13 no hits & (original description: no original description) 0.8955019114315816 81 evm.model.tig00000042.236 (at1g27320 : 119.0) Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2.; histidine kinase 3 (HK3); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CHASE (InterPro:IPR006189), Signal transduction histidine kinase, core (InterPro:IPR005467), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: histidine kinase 2 (TAIR:AT5G35750.1); Has 124308 Blast hits to 110912 proteins in 3043 species: Archae - 772; Bacteria - 110408; Metazoa - 31; Fungi - 2185; Plants - 2022; Viruses - 28; Other Eukaryotes - 8862 (source: NCBI BLink). & (o48929|etr1_tobac : 94.0) Ethylene receptor (EC 2.7.13.3) (NT-ETR1) - Nicotiana tabacum (Common tobacco) & (reliability: 238.0) & (original description: no original description) 0.8952850014411805 82 evm.model.tig00000383.96 (at2g32000 : 420.0) DNA topoisomerase, type IA, core; FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding; INVOLVED IN: DNA topological change, DNA unwinding involved in replication, DNA metabolic process; LOCATED IN: endomembrane system, chromosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Toprim domain, subgroup (InterPro:IPR006154), DNA topoisomerase, type IA, central region, subdomain 1 (InterPro:IPR013824), DNA topoisomerase, type IA, core (InterPro:IPR000380), Toprim domain (InterPro:IPR006171), DNA topoisomerase, type IA, DNA-binding (InterPro:IPR003602), DNA topoisomerase, type IA, domain 2 (InterPro:IPR003601), DNA topoisomerase, type IA, central (InterPro:IPR013497), DNA topoisomerase, type IA, central region, subdomain 3 (InterPro:IPR013826); BEST Arabidopsis thaliana protein match is: topoisomerase 3alpha (TAIR:AT5G63920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 840.0) & (original description: no original description) 0.8946395252921162 84 evm.model.tig00000514.12 no hits & (original description: no original description) 0.8931061857862528 91 evm.model.tig00021462.37 no hits & (original description: no original description) 0.8924686527693859 93 evm.model.tig00020562.46 no hits & (original description: no original description) 0.8915412826155663 97 evm.model.tig00021489.33 no hits & (original description: no original description) 0.8911429334020617 99