Sequence Description Alias PCC hrr evm.model.tig00021312.53 (at5g22770 : 587.0) alpha-adaptin (alpha-ADR); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: male gametophyte, pollen tube, leaf; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, alpha/beta/gamma-adaptin, appendage, Ig-like subdomain (InterPro:IPR008152), Adaptor protein complex AP-2, alpha subunit (InterPro:IPR017104), Armadillo-like helical (InterPro:IPR011989), Clathrin adaptor, alpha-adaptin, appendage, Ig-like subdomain (InterPro:IPR013038), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553), Clathrin adaptor, alpha-adaptin, appendage, C-terminal subdomain (InterPro:IPR003164), Armadillo-type fold (InterPro:IPR016024), Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain (InterPro:IPR015873), Clathrin/coatomer adaptor, adaptin-like, appendage, C-terminal subdomain (InterPro:IPR009028), Clathrin/coatomer adaptor, adaptin-like, appendage, Ig-like subdomain (InterPro:IPR013041); BEST Arabidopsis thaliana protein match is: Adaptor protein complex AP-2, alpha subunit (TAIR:AT5G22780.1); Has 2529 Blast hits to 2470 proteins in 297 species: Archae - 0; Bacteria - 0; Metazoa - 987; Fungi - 687; Plants - 265; Viruses - 0; Other Eukaryotes - 590 (source: NCBI BLink). & (reliability: 1174.0) & (original description: no original description) 0.9180940057974057 6 evm.model.tig00001029.20 (at4g22260 : 135.0) Similar to mitochondrial alternative oxidase. im mutants have a variegated phenotype and fail to differentiate chloroplasts in the majority of their cells under high light intensity continuous illumination. The white tissues of immutans accumulate phytoene, a non-colored C40 carotenoid intermediate. This suggests that immutans controls, either directly or indirectly, the activity of phytoene desaturase (PDS), the enzyme that converts phytoene to zeta-carotene in higher plants. However, im is not the structural gene for PDS. It is located in the lumenar face of the thylakoid membrane. IM is expressed ubiquitously in plant tissues.; IMMUTANS (IM); CONTAINS InterPro DOMAIN/s: Alternative oxidase (InterPro:IPR002680); BEST Arabidopsis thaliana protein match is: alternative oxidase 2 (TAIR:AT5G64210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 270.0) & (original description: no original description) 0.9103332928882331 46 evm.model.tig00020943.89 (original description: no original description) 0.9082736470931893 20 evm.model.tig00021428.17 no hits & (original description: no original description) 0.9075518570027661 14 evm.model.tig00001278.8 no hits & (original description: no original description) 0.9062119887606458 90 evm.model.tig00020911.47 (at1g04080 : 141.0) PRP39; INVOLVED IN: regulation of timing of transition from vegetative to reproductive phase; LOCATED IN: intracellular; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G46400.1). & (reliability: 282.0) & (original description: no original description) 0.9025820976576101 31 evm.model.tig00020537.66 (at5g40820 : 318.0) Encodes a Arabidopsis ortholog of the ATR protein kinase that is involved in a wide range of responses to DNA damage and plays a central role in cell-cycle regulation. Dominant loss of function alleles identified as suppressors of ALS also exhibit increased tolerance to aluminum. This may be due to the inhibition of terminal differentiation of the root apex upon exposure to Al.; Ataxia telangiectasia-mutated and RAD3-related (ATR); FUNCTIONS IN: protein serine/threonine kinase activity, inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: in 9 processes; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403), UME (InterPro:IPR012993), Protein kinase-like domain (InterPro:IPR011009), PIK-related kinase, FAT (InterPro:IPR003151), Armadillo-type fold (InterPro:IPR016024), PIK-related kinase (InterPro:IPR014009), Phosphatidylinositol 3/4-kinase, conserved site (InterPro:IPR018936), PIK-related kinase, FATC (InterPro:IPR003152); BEST Arabidopsis thaliana protein match is: ataxia-telangiectasia mutated (TAIR:AT3G48190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q5z987|atr_orysa : 304.0) Serine/threonine-protein kinase ATR (EC 2.7.11.1) - Oryza sativa (Rice) & (reliability: 636.0) & (original description: no original description) 0.9000860936137898 8 evm.model.tig00000663.61 no hits & (original description: no original description) 0.8883085168267959 51 evm.model.tig00000470.3 no hits & (original description: no original description) 0.8874927094739232 12 evm.model.tig00000388.26 no hits & (original description: no original description) 0.8869251961157157 87 evm.model.tig00000144.179 (at1g71860 : 132.0) Encodes a protein with tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress.; protein tyrosine phosphatase 1 (PTP1); FUNCTIONS IN: protein tyrosine phosphatase activity; INVOLVED IN: intracellular protein kinase cascade; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Protein-tyrosine phosphatase, receptor/non-receptor type (InterPro:IPR000242); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 264.0) & (original description: no original description) 0.8860859647919274 78 evm.model.tig00020800.16 no hits & (original description: no original description) 0.8858473285896422 24 evm.model.tig00020563.89 no hits & (original description: no original description) 0.8854399011820135 56 evm.model.tig00020806.13 (at1g12130 : 102.0) Flavin-binding monooxygenase family protein; FUNCTIONS IN: NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: oxidation reduction; CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT1G12160.1); Has 14567 Blast hits to 13953 proteins in 1841 species: Archae - 71; Bacteria - 7478; Metazoa - 1324; Fungi - 1597; Plants - 844; Viruses - 0; Other Eukaryotes - 3253 (source: NCBI BLink). & (reliability: 196.4) & (original description: no original description) 0.8847340977700761 17 evm.model.tig00020734.20 no hits & (original description: no original description) 0.8846615538550439 19 evm.model.tig00021319.11 (at1g73020 : 100.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF590 (InterPro:IPR007632). & (reliability: 200.0) & (original description: no original description) 0.8846140858250674 45 evm.model.tig00021428.20 no hits & (original description: no original description) 0.8832971580591229 73 evm.model.tig00020780.21 no hits & (original description: no original description) 0.883008101887173 69 evm.model.tig00020944.19 no hits & (original description: no original description) 0.8828858626830772 23 evm.model.tig00000241.25 no hits & (original description: no original description) 0.8824160504641494 24 evm.model.tig00021126.24 no hits & (original description: no original description) 0.8813596822057581 85 evm.model.tig00001542.16 (at3g15380 : 208.0) Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); Has 948 Blast hits to 937 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 503; Fungi - 120; Plants - 118; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink). & (reliability: 416.0) & (original description: no original description) 0.8798080095704761 57 evm.model.tig00021017.36 no hits & (original description: no original description) 0.8779678490166616 92 evm.model.tig00020556.51 no hits & (original description: no original description) 0.8777270410680397 81 evm.model.tig00000178.53 no hits & (original description: no original description) 0.8744423763707827 54 evm.model.tig00001339.8 no hits & (original description: no original description) 0.8736511470220136 93 evm.model.tig00021350.43 no hits & (original description: no original description) 0.8729394185332692 46 evm.model.tig00021374.38 no hits & (original description: no original description) 0.8705349928995348 41 evm.model.tig00001073.11 (at3g27325 : 118.0) hydrolases, acting on ester bonds; FUNCTIONS IN: hydrolase activity, acting on ester bonds; INVOLVED IN: intracellular protein transport, GPI anchor metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: PGAP1-like (InterPro:IPR012908). & (reliability: 236.0) & (original description: no original description) 0.8696990515128078 92 evm.model.tig00000459.96 no hits & (original description: no original description) 0.8684440958115384 98 evm.model.tig00000204.55 no hits & (original description: no original description) 0.8683382094291118 68 evm.model.tig00000254.116 no hits & (original description: no original description) 0.8680414766534921 64 evm.model.tig00000147.58 (at1g13770 : 156.0) ROOT UV-B SENSITIVE 3 (RUS3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT3G45890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 312.0) & (original description: no original description) 0.8673840280441925 84 evm.model.tig00001130.28 no hits & (original description: no original description) 0.8673505514080523 68 evm.model.tig00000144.115 no hits & (original description: no original description) 0.8665287172644548 55 evm.model.tig00000658.31 (at1g02020 : 276.0) nitroreductase family protein; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor, oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nitroreductase-like (InterPro:IPR000415); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 552.0) & (original description: no original description) 0.8634621486863742 59 evm.model.tig00021464.24 no hits & (original description: no original description) 0.8626925409375525 69 evm.model.tig00020927.32 (at2g47590 : 108.0) photolyase/blue light photoreceptor PHR2 (PHR2) mRNA,; photolyase/blue-light receptor 2 (PHR2); FUNCTIONS IN: DNA photolyase activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101); BEST Arabidopsis thaliana protein match is: cryptochrome 3 (TAIR:AT5G24850.1); Has 4854 Blast hits to 4851 proteins in 1205 species: Archae - 82; Bacteria - 2283; Metazoa - 348; Fungi - 105; Plants - 417; Viruses - 0; Other Eukaryotes - 1619 (source: NCBI BLink). & (q651u1|cryd_orysa : 87.4) Cryptochrome DASH, chloroplast/mitochondrial precursor - Oryza sativa (Rice) & (reliability: 216.0) & (original description: no original description) 0.8613961171476158 65 evm.model.tig00000981.33 no hits & (original description: no original description) 0.8593924369048268 71 evm.model.tig00000663.47 no hits & (original description: no original description) 0.8592980538807553 88 evm.model.tig00001094.14 (at5g40200 : 239.0) Encodes a putative DegP protease.; DegP protease 9 (DegP9); FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: nucleolus, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Serine endopeptidase DegP2 (InterPro:IPR015724), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DEGP protease 2 (TAIR:AT2G47940.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 478.0) & (original description: no original description) 0.8576877123946776 80 evm.model.tig00020556.27 no hits & (original description: no original description) 0.8559374426734138 84 evm.model.tig00020710.30 no hits & (original description: no original description) 0.8539629667097162 93 evm.model.tig00020556.88 no hits & (original description: no original description) 0.8535756540439093 97