Sequence Description Alias PCC hrr evm.model.tig00021037.43 no hits & (original description: no original description) 0.9089667038781657 8 evm.model.tig00021293.6 (at5g22750 : 259.0) DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer; RAD5; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: embryo, sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT5G43530.1); Has 27107 Blast hits to 18179 proteins in 1771 species: Archae - 108; Bacteria - 7266; Metazoa - 8140; Fungi - 5089; Plants - 2446; Viruses - 173; Other Eukaryotes - 3885 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 80.9) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 518.0) & (original description: no original description) 0.9084614893253736 2 evm.model.tig00021501.9 (at3g57300 : 465.0) Encodes the Arabidopsis INO80 ortholog of the SWI/SNF ATPase family. Functions as a positive regulator of DNA homologous recombination (HR). In INO80 mutants, the HR frequency is reduced to 15% of that in the wild-type. Mutation in INO80 does not affect sensitivity to genotoxic agents and efficiency of T-DNA integration. INO80 was also shown to regulate a subset of the Arabidopsis transcriptome.; INO80 ortholog (INO80); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: somatic cell DNA recombination, positive regulation of DNA repair, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA binding domain, INO80 (InterPro:IPR020838), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein (TAIR:AT3G12810.1). & (q7g8y3|isw2_orysa : 244.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 930.0) & (original description: no original description) 0.896682585483638 4 evm.model.tig00000663.31 (at3g60740 : 192.0) Encodes tubulin-folding cofactor D. Mutants arrest during embryogenesis with embryos that are small, mushroom-shaped ('pilz') and consist of only one or few large cells each containing one or more variably enlarged nuclei and often cell wall stubs. Gene product necessary for continuous microtubule organization.; TITAN 1 (TTN1); CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 384.0) & (original description: no original description) 0.891297538965022 17 evm.model.tig00020554.56 no hits & (original description: no original description) 0.8904884562341111 56 evm.model.tig00020943.19 (at2g40550 : 152.0) Encodes a nuclear localized target of E2Fa-DPa, transcription factors controlling cell cycle progression. Required for sister chromatid cohesion and DNA repair.; E2F target gene 1 (ETG1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: sister chromatid cohesion, postreplication repair, DNA replication; LOCATED IN: nuclear replisome, nucleus, chloroplast envelope, MCM complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2044, membrane (InterPro:IPR019140); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 304.0) & (original description: no original description) 0.8851173209927977 55 evm.model.tig00001056.23 no hits & (original description: no original description) 0.878291711993801 52 evm.model.tig00000403.99 no hits & (original description: no original description) 0.8777468998849908 8 evm.model.tig00020537.57 no hits & (original description: no original description) 0.8768652292135218 36 evm.model.tig00000254.53 no hits & (original description: no original description) 0.8723770621994721 10 evm.model.tig00001042.33 no hits & (original description: no original description) 0.8721439180320574 11 evm.model.tig00021122.10 (at2g37560 : 114.0) Origin Recognition Complex subunit 2. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts strongly with all ORC subunits.; origin recognition complex second largest subunit 2 (ORC2); CONTAINS InterPro DOMAIN/s: Origin recognition complex, subunit 2 (InterPro:IPR007220); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 228.0) & (original description: no original description) 0.8691606871041598 12 evm.model.tig00000640.17 no hits & (original description: no original description) 0.8672010955580503 13 evm.model.tig00000459.100 no hits & (original description: no original description) 0.8609848129619059 96 evm.model.tig00000147.73 no hits & (original description: no original description) 0.8584218654579695 28 evm.model.tig00020849.4 no hits & (original description: no original description) 0.8563663848933435 19 evm.model.tig00000241.67 no hits & (original description: no original description) 0.8552053493057986 88 evm.model.tig00021623.14 no hits & (original description: no original description) 0.8546568417044346 21 evm.model.tig00000480.43 (at3g24590 : 83.6) Encodes a signal peptidase Plsp1 (plastidic type I signal peptidase 1). Required for thylakoid development. Functions in the maturation of the 75-kD component of the translocon at the outer envelope membrane of chloroplasts and oxygen evolving complex subunit 33 (OE33).; plastidic type i signal peptidase 1 (PLSP1); FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis, thylakoid membrane organization, protein maturation; LOCATED IN: chloroplast thylakoid membrane, chloroplast, membrane, plastid envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S24/S26A/S26B/S26C, beta-ribbon domain (InterPro:IPR011056), Peptidase S24/S26A/S26B/S26C (InterPro:IPR015927), Peptidase S26A, signal peptidase I, conserved site (InterPro:IPR019758), Peptidase S26, conserved region (InterPro:IPR019533), Peptidase S26A, signal peptidase I (InterPro:IPR000223), Peptidase S26A, signal peptidase I, serine active site (InterPro:IPR019756); BEST Arabidopsis thaliana protein match is: Peptidase S24/S26A/S26B/S26C family protein (TAIR:AT1G06870.1); Has 9773 Blast hits to 9438 proteins in 2404 species: Archae - 0; Bacteria - 7280; Metazoa - 206; Fungi - 105; Plants - 230; Viruses - 0; Other Eukaryotes - 1952 (source: NCBI BLink). & (reliability: 167.2) & (original description: no original description) 0.8542486774457894 22 evm.model.tig00000042.83 no hits & (original description: no original description) 0.8536331304567385 85 evm.model.tig00001374.8 no hits & (original description: no original description) 0.8536251607917433 24 evm.model.tig00021612.42 no hits & (original description: no original description) 0.8525020323855914 70 evm.model.tig00000310.50 no hits & (original description: no original description) 0.8518710226292157 65 evm.model.tig00021038.99 (at3g08505 : 137.0) zinc finger (CCCH-type/C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 274.0) & (original description: no original description) 0.8503819467943866 69 evm.model.tig00021217.5 no hits & (original description: no original description) 0.8490788753423363 29 evm.model.tig00000282.13 no hits & (original description: no original description) 0.84786621945021 92 evm.model.tig00020930.8 no hits & (original description: no original description) 0.8476932400721038 67 evm.model.tig00021623.18 no hits & (original description: no original description) 0.8472693185307995 72 evm.model.tig00001302.2 no hits & (original description: no original description) 0.8464992202805959 75 evm.model.tig00000241.25 no hits & (original description: no original description) 0.8461969438417727 73 evm.model.tig00000057.45 no hits & (original description: no original description) 0.8433469668311696 37 evm.model.tig00020902.120 no hits & (original description: no original description) 0.840066176196217 38 evm.model.tig00001215.1 no hits & (original description: no original description) 0.8394907645624439 40 evm.model.tig00000169.20 no hits & (original description: no original description) 0.8380576059063779 43 evm.model.tig00000769.46 no hits & (original description: no original description) 0.8379047378723011 45 evm.model.tig00000989.45 no hits & (original description: no original description) 0.8369856703555816 46 evm.model.tig00000448.74 no hits & (original description: no original description) 0.836006360388763 47 evm.model.tig00021623.8 no hits & (original description: no original description) 0.8348511781139286 48 evm.model.tig00021432.14 no hits & (original description: no original description) 0.8337861623732684 91 evm.model.tig00000431.16 no hits & (original description: no original description) 0.8332910767734523 89 evm.model.tig00001000.26 no hits & (original description: no original description) 0.8315470409030743 58 evm.model.tig00021623.13 (at2g25170 : 464.0) Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1. Is an extragenic suppressor of slr2 (SSL2). Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1. It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis.; PICKLE (PKL); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1087 (InterPro:IPR009463), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Protein of unknown function DUF1086 (InterPro:IPR009462), Chromo domain (InterPro:IPR000953), SNF2-related (InterPro:IPR000330), DEAD-like helicase, N-terminal (InterPro:IPR014001), Chromo domain-like (InterPro:IPR016197), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor, putative (TAIR:AT4G31900.1); Has 20234 Blast hits to 17178 proteins in 1958 species: Archae - 161; Bacteria - 5176; Metazoa - 5098; Fungi - 4334; Plants - 1876; Viruses - 134; Other Eukaryotes - 3455 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 369.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 872.0) & (original description: no original description) 0.8309684900907423 59 evm.model.tig00000237.10 no hits & (original description: no original description) 0.829214983819559 61 evm.model.tig00001278.20 (at3g54380 : 83.6) SAC3/GANP/Nin1/mts3/eIF-3 p25 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: SAC3/GANP/Nin1/mts3/eIF-3 p25 family (TAIR:AT3G06290.1). & (reliability: 167.2) & (original description: no original description) 0.8232214837135214 90 evm.model.tig00020930.5 no hits & (original description: no original description) 0.823174720472374 91 evm.model.tig00000361.6 no hits & (original description: no original description) 0.8225153270091182 72 evm.model.tig00000113.9 no hits & (original description: no original description) 0.8197031551213777 75 evm.model.tig00021374.7 no hits & (original description: no original description) 0.8191059166628392 78 evm.model.tig00000823.27 no hits & (original description: no original description) 0.8187628718801568 80 evm.model.tig00021318.40 no hits & (original description: no original description) 0.8145627202343366 90 evm.model.tig00000882.17 no hits & (original description: no original description) 0.8139992712862383 92 evm.model.tig00021122.8 no hits & (original description: no original description) 0.8113986971651619 97 evm.model.tig00020560.20 no hits & (original description: no original description) 0.810210565616532 99