Sequence Description Alias PCC hrr evm.model.tig00021234.33 no hits & (original description: no original description) 0.8359040741571775 12 evm.model.tig00001029.30 no hits & (original description: no original description) 0.8340265868028937 8 evm.model.tig00001155.28 (at3g01320 : 124.0) Encodes SIN3-like 1, a homolog of the transcriptional repressor SIN3 (AT1G24190).; SIN3-like 1 (SNL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 2 (TAIR:AT5G15020.2). & (reliability: 248.0) & (original description: no original description) 0.8176048192628338 55 evm.model.tig00020875.12 (q39572|yptc6_chlre : 108.0) Ras-related protein YPTC6 - Chlamydomonas reinhardtii & (at3g07410 : 107.0) RAB GTPase homolog A5B (RABA5b); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G43130.1); Has 27936 Blast hits to 27886 proteins in 749 species: Archae - 21; Bacteria - 143; Metazoa - 14734; Fungi - 3835; Plants - 3288; Viruses - 20; Other Eukaryotes - 5895 (source: NCBI BLink). & (reliability: 214.0) & (original description: no original description) 0.8156026730243883 21 evm.model.tig00001331.14 no hits & (original description: no original description) 0.8069219419153781 51 evm.model.tig00000093.30 no hits & (original description: no original description) 0.799174995150288 34 evm.model.tig00000269.84 (at4g32630 : 124.0) ArfGap/RecO-like zinc finger domain-containing protein; FUNCTIONS IN: ARF GTPase activator activity, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 242.0) & (original description: no original description) 0.7951330302203201 54 evm.model.tig00001095.21 no hits & (original description: no original description) 0.7934088483126428 15 evm.model.tig00021127.181 (at1g67680 : 211.0) SRP72 RNA-binding domain; FUNCTIONS IN: 7S RNA binding; INVOLVED IN: SRP-dependent cotranslational protein targeting to membrane; LOCATED IN: signal recognition particle; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Signal recognition particle, SRP72 subunit, RNA-binding (InterPro:IPR013699); BEST Arabidopsis thaliana protein match is: SRP72 RNA-binding domain (TAIR:AT1G67650.1); Has 655 Blast hits to 637 proteins in 232 species: Archae - 21; Bacteria - 65; Metazoa - 237; Fungi - 154; Plants - 42; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink). & (reliability: 422.0) & (original description: no original description) 0.7880794473543183 10 evm.model.tig00001214.5 no hits & (original description: no original description) 0.7847614294610581 11 evm.model.tig00021312.38 no hits & (original description: no original description) 0.7843484152181203 30 evm.model.tig00000241.93 (q9xhl5|hmdh3_orysa : 462.0) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 (EC 1.1.1.34) (HMG-CoA reductase 3) - Oryza sativa (Rice) & (at1g76490 : 447.0) Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in leaf tissue but not controlled by light in the root (confine; hydroxy methylglutaryl CoA reductase 1 (HMG1); CONTAINS InterPro DOMAIN/s: Hydroxymethylglutaryl-CoA reductase, class I, catalytic (InterPro:IPR004554), Hydroxymethylglutaryl-CoA reductase, class I/II, substrate-binding (InterPro:IPR009029), Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding (InterPro:IPR009023), Hydroxymethylglutaryl-CoA reductase, class I/II, catalytic (InterPro:IPR002202); BEST Arabidopsis thaliana protein match is: 3-hydroxy-3-methylglutaryl-CoA reductase 2 (TAIR:AT2G17370.1); Has 2212 Blast hits to 2210 proteins in 935 species: Archae - 202; Bacteria - 1018; Metazoa - 225; Fungi - 225; Plants - 266; Viruses - 1; Other Eukaryotes - 275 (source: NCBI BLink). & (reliability: 894.0) & (original description: no original description) 0.7834140522179973 94 evm.model.tig00000852.9 (at3g61860 : 165.0) encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined.; RSP31; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, spliceosomal complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G46610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 330.0) & (original description: no original description) 0.7775475745528615 14 evm.model.tig00000692.13 (p46869|fla10_chlre : 574.0) Kinesin-like protein FLA10 (Protein KHP1) - Chlamydomonas reinhardtii & (at2g28620 : 292.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G45850.2); Has 49289 Blast hits to 35260 proteins in 1950 species: Archae - 481; Bacteria - 7561; Metazoa - 22029; Fungi - 4505; Plants - 3473; Viruses - 125; Other Eukaryotes - 11115 (source: NCBI BLink). & (reliability: 584.0) & (original description: no original description) 0.774341056996885 25 evm.model.tig00021616.20 no hits & (original description: no original description) 0.7663933882736758 17 evm.model.tig00000889.34 no hits & (original description: no original description) 0.7654900590835881 27 evm.model.tig00020710.122 no hits & (original description: no original description) 0.7583442321488562 20 evm.model.tig00020685.37 (p48480|pp11_acecl : 229.0) Serine/threonine-protein phosphatase PP1 isozyme 1 (EC 3.1.3.16) - Acetabularia cliftonii (Green alga) & (at5g59160 : 218.0) Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.; type one serine/threonine protein phosphatase 2 (TOPP2); CONTAINS InterPro DOMAIN/s: Metallophosphoesterase (InterPro:IPR004843), Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase (InterPro:IPR006186); BEST Arabidopsis thaliana protein match is: type one serine/threonine protein phosphatase 5 (TAIR:AT3G46820.1); Has 7217 Blast hits to 7021 proteins in 626 species: Archae - 78; Bacteria - 572; Metazoa - 2410; Fungi - 1415; Plants - 989; Viruses - 12; Other Eukaryotes - 1741 (source: NCBI BLink). & (reliability: 436.0) & (original description: no original description) 0.7535852896839277 62 evm.model.tig00020531.7 no hits & (original description: no original description) 0.7519536090168811 56 evm.model.tig00000670.30 (at2g44680 : 263.0) Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock.; casein kinase II beta subunit 4 (CKB4); CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: casein kinase II beta chain 3 (TAIR:AT3G60250.2); Has 1093 Blast hits to 1091 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 429; Fungi - 285; Plants - 156; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink). & (reliability: 526.0) & (original description: no original description) 0.7473390996363581 73 evm.model.tig00000743.10 no hits & (original description: no original description) 0.7447545253432383 27 evm.model.tig00000889.19 no hits & (original description: no original description) 0.7367225171160507 31 evm.model.tig00000144.32 no hits & (original description: no original description) 0.7359514154130485 54 evm.model.tig00000455.6 (at2g38090 : 95.1) Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Homeodomain-like transcriptional regulator (TAIR:AT5G58900.1); Has 1891 Blast hits to 1883 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 3; Plants - 1444; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink). & (reliability: 190.2) & (original description: no original description) 0.7357780394094688 34 evm.model.tig00001628.7 (at5g10350 : 151.0) RNA-binding (RRM/RBD/RNP motifs) family protein; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G65260.1). & (reliability: 302.0) & (original description: no original description) 0.7327997836983249 82 evm.model.tig00001415.6 no hits & (original description: no original description) 0.7294938369618263 58 evm.model.tig00000796.17 no hits & (original description: no original description) 0.7289983189951244 54 evm.model.tig00020556.96 no hits & (original description: no original description) 0.7184240107116616 49 evm.model.tig00020848.83 no hits & (original description: no original description) 0.7179950294379702 60 evm.model.tig00000254.11 no hits & (original description: no original description) 0.71556537544959 78 evm.model.tig00000615.27 no hits & (original description: no original description) 0.7067630267896955 67 evm.model.tig00000361.22 (at3g20550 : 204.0) Encodes a nuclear localized FHA (forhkead) domain containing protein.Mutant plants have shortened roots, delayed flowering time, altered floral organ number, defective floral organs and reduced fertility.Ddl mutants also show reduced levels of pri-miRNAs as well as mature miRNAs suggesting involvement in biogenesis of miRNAs. DDL does not affect transcription of miRNAs directly but may act through other proteins such as DCL.; DAWDLE (DDL); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell proliferation, production of miRNAs involved in gene silencing by miRNA; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24410.1); Has 20960 Blast hits to 11868 proteins in 728 species: Archae - 18; Bacteria - 1126; Metazoa - 10847; Fungi - 2610; Plants - 1671; Viruses - 61; Other Eukaryotes - 4627 (source: NCBI BLink). & (reliability: 408.0) & (original description: no original description) 0.7008002840307558 77 evm.model.tig00000808.35 no hits & (original description: no original description) 0.7001096845705972 79 evm.model.tig00000823.11 no hits & (original description: no original description) 0.6992090053552954 82