Sequence Description Alias PCC hrr evm.model.tig00000241.190 (at3g54830 : 103.0) Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G39130.1); Has 4642 Blast hits to 4638 proteins in 371 species: Archae - 12; Bacteria - 272; Metazoa - 1629; Fungi - 958; Plants - 1130; Viruses - 3; Other Eukaryotes - 638 (source: NCBI BLink). & (reliability: 206.0) & (original description: no original description) 0.9424803447361447 1 evm.model.tig00020557.24 no hits & (original description: no original description) 0.9416465241017372 3 evm.model.tig00001154.34 no hits & (original description: no original description) 0.9402008509310098 4 evm.model.tig00021521.20 no hits & (original description: no original description) 0.9381621152916979 22 evm.model.tig00000204.49 no hits & (original description: no original description) 0.9358841203313754 9 evm.model.tig00001535.3 no hits & (original description: no original description) 0.9288604450002044 6 evm.model.tig00001128.2 (at4g25350 : 168.0) SHB1 encodes a nuclear and cytosolic protein that has motifs homologous with SYG1 protein family members. Acts in cryptochrome signaling. Overexpression of SHB1 enhanced the expression of PHYTOCHROME-INTERACTING FACTOR4 (PIF4) under red light and promoted proteasome-mediated degradation of phytochrome A and hypocotyl elongation under far-red light. A knockout allele suppressed LONG HYPOCOTYL IN FAR-RED LIGHT1 (HFR1) expression and showed several deetiolation phenotypes. Acts upstream of HFR1. Regulates seed development.; SHORT HYPOCOTYL UNDER BLUE1 (SHB1); CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: EXS (ERD1/XPR1/SYG1) family protein (TAIR:AT1G35350.1); Has 1169 Blast hits to 1111 proteins in 205 species: Archae - 2; Bacteria - 6; Metazoa - 265; Fungi - 425; Plants - 309; Viruses - 0; Other Eukaryotes - 162 (source: NCBI BLink). & (reliability: 336.0) & (original description: no original description) 0.9276367117167631 22 evm.model.tig00000849.16 no hits & (original description: no original description) 0.9270893400599863 37 evm.model.tig00000093.242 (at4g16440 : 125.0) Encodes a [FeFe]-hydrogenase-like protein named Gollum (for Growth in different Oxygen LeveLs inflUences Morphogenesis). Heterologous expression of Gollum in E. coli indicates that it probably contains two [Fe-S] clusters with different magnetic properties. Sequence alignment analysis indicates that these two clusters would be topologically equivalent to the mesial and proximal [Fe-S] centers of [FeFe]-hydrogenases. Knockdown mutants (RNAi) show a dwarf phenotype at the normal atmospheric partial oxygen pressure of 21 kPa. This dwarf phenotype could be rescued by growing the plant under low oxygen pressure (5kPa), suggesting a role for this gene in oxygen sensing.; ferredoxin hydrogenases; CONTAINS InterPro DOMAIN/s: Iron hydrogenase, large subunit, C-terminal (InterPro:IPR004108), Iron hydrogenase (InterPro:IPR009016), Iron hydrogenase, small subunit-like (InterPro:IPR003149); Has 2574 Blast hits to 2544 proteins in 612 species: Archae - 1; Bacteria - 1826; Metazoa - 221; Fungi - 188; Plants - 72; Viruses - 0; Other Eukaryotes - 266 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description) 0.9265840830350138 11 evm.model.tig00000215.111 no hits & (original description: no original description) 0.9215795824230526 40 evm.model.tig00020904.43 (at5g03730 : 142.0) Homologous to the RAF family of serine/threonine protein kinases. Negative regulator in the ethylene signal transduction pathway. Interacts with the putative ethylene receptors ETR1 and ERS. Constitutively expressed.; CONSTITUTIVE TRIPLE RESPONSE 1 (CTR1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G24480.1); Has 126606 Blast hits to 124675 proteins in 4966 species: Archae - 112; Bacteria - 13843; Metazoa - 48138; Fungi - 11278; Plants - 33351; Viruses - 509; Other Eukaryotes - 19375 (source: NCBI BLink). & (o24585|cri4_maize : 88.6) Putative receptor protein kinase CRINKLY4 precursor (EC 2.7.11.1) - Zea mays (Maize) & (reliability: 284.0) & (original description: no original description) 0.9186874775828607 12 evm.model.tig00000204.33 no hits & (original description: no original description) 0.9182674327179414 22 evm.model.tig00000863.36 no hits & (original description: no original description) 0.917566561181967 81 evm.model.tig00000189.40 no hits & (original description: no original description) 0.9158590909826705 42 evm.model.tig00021580.2 (at5g45380 : 340.0) DEGRADATION OF UREA 3 (DUR3); CONTAINS InterPro DOMAIN/s: Sodium/solute symporter, subgroup (InterPro:IPR019900), Sodium/solute symporter (InterPro:IPR001734); Has 9388 Blast hits to 9377 proteins in 1702 species: Archae - 173; Bacteria - 6389; Metazoa - 719; Fungi - 340; Plants - 51; Viruses - 0; Other Eukaryotes - 1716 (source: NCBI BLink). & (reliability: 680.0) & (original description: no original description) 0.9148918139833329 86 evm.model.tig00000451.15 (at3g63480 : 219.0) ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 10148 Blast hits to 9733 proteins in 305 species: Archae - 0; Bacteria - 0; Metazoa - 4474; Fungi - 1347; Plants - 1834; Viruses - 0; Other Eukaryotes - 2493 (source: NCBI BLink). & (p46869|fla10_chlre : 211.0) Kinesin-like protein FLA10 (Protein KHP1) - Chlamydomonas reinhardtii & (reliability: 438.0) & (original description: no original description) 0.9135876177741676 17 evm.model.tig00021462.15 no hits & (original description: no original description) 0.9126510363739152 96 evm.model.tig00000692.66 no hits & (original description: no original description) 0.9125401431045996 26 evm.model.tig00020965.13 no hits & (original description: no original description) 0.9115934834975875 20 evm.model.tig00021179.24 no hits & (original description: no original description) 0.9108901815285569 52 evm.model.tig00000828.6 no hits & (original description: no original description) 0.9105791096514937 22 evm.model.tig00001215.3 no hits & (original description: no original description) 0.9099105818402315 23 evm.model.tig00021603.8 (at4g29880 : 96.3) Encodes PIRL7, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.; plant intracellular ras group-related LRR 7 (PIRL7); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 6 (TAIR:AT2G19330.1); Has 62582 Blast hits to 28443 proteins in 1064 species: Archae - 25; Bacteria - 6458; Metazoa - 27380; Fungi - 2135; Plants - 22921; Viruses - 26; Other Eukaryotes - 3637 (source: NCBI BLink). & (reliability: 176.4) & (original description: no original description) 0.9098182794679867 94 evm.model.tig00020909.10 no hits & (original description: no original description) 0.9077587915208849 45 evm.model.tig00020572.42 no hits & (original description: no original description) 0.907676100757678 59 evm.model.tig00020999.5 no hits & (original description: no original description) 0.9075566719973791 28 evm.model.tig00021038.42 no hits & (original description: no original description) 0.907296941240876 100 evm.model.tig00001041.9 no hits & (original description: no original description) 0.9062465208735477 49 evm.model.tig00000865.60 no hits & (original description: no original description) 0.9059604968902126 59 evm.model.tig00000198.4 no hits & (original description: no original description) 0.9057739178465181 32 evm.model.tig00001264.29 (q6dw75|dgdg2_soybn : 105.0) Digalactosyldiacylglycerol synthase 2, chloroplast (EC 2.4.1.241) - Glycine max (Soybean) & (at3g11670 : 101.0) Responsible for the final assembly of galactolipids in photosynthetic membranes. Provides stability to the PS I core complex (e.g. subunits PsaD, PsaE).; DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1 (DGD1); BEST Arabidopsis thaliana protein match is: digalactosyl diacylglycerol deficient 2 (TAIR:AT4G00550.1); Has 183 Blast hits to 183 proteins in 35 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). & (reliability: 202.0) & (original description: no original description) 0.9046814315604458 45 evm.model.tig00000254.130 no hits & (original description: no original description) 0.904252508852632 52 evm.model.tig00000383.96 (at2g32000 : 420.0) DNA topoisomerase, type IA, core; FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding; INVOLVED IN: DNA topological change, DNA unwinding involved in replication, DNA metabolic process; LOCATED IN: endomembrane system, chromosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Toprim domain, subgroup (InterPro:IPR006154), DNA topoisomerase, type IA, central region, subdomain 1 (InterPro:IPR013824), DNA topoisomerase, type IA, core (InterPro:IPR000380), Toprim domain (InterPro:IPR006171), DNA topoisomerase, type IA, DNA-binding (InterPro:IPR003602), DNA topoisomerase, type IA, domain 2 (InterPro:IPR003601), DNA topoisomerase, type IA, central (InterPro:IPR013497), DNA topoisomerase, type IA, central region, subdomain 3 (InterPro:IPR013826); BEST Arabidopsis thaliana protein match is: topoisomerase 3alpha (TAIR:AT5G63920.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 840.0) & (original description: no original description) 0.9040038202302001 46 evm.model.tig00000405.21 no hits & (original description: no original description) 0.9038753858793525 52 evm.model.tig00021346.5 no hits & (original description: no original description) 0.9032461471214603 52 evm.model.tig00001250.13 no hits & (original description: no original description) 0.9023100338422113 49 evm.model.tig00020801.16 no hits & (original description: no original description) 0.8996797191534533 92 evm.model.tig00000042.26 no hits & (original description: no original description) 0.8993183021897917 75 evm.model.tig00000057.91 no hits & (original description: no original description) 0.8992722195157278 48 evm.model.tig00020902.33 no hits & (original description: no original description) 0.8969818887003045 49 evm.model.tig00000269.38 no hits & (original description: no original description) 0.895205993113079 95 evm.model.tig00000093.241 no hits & (original description: no original description) 0.895167057341219 52 evm.model.tig00021348.9 no hits & (original description: no original description) 0.8948296675561268 82 evm.model.tig00001093.23 no hits & (original description: no original description) 0.8947741715397705 54 evm.model.tig00021571.9 no hits & (original description: no original description) 0.8941141206664183 55 evm.model.tig00000523.7 no hits & (original description: no original description) 0.8939965028762868 96 evm.model.tig00000983.15 no hits & (original description: no original description) 0.8928012622987157 74 evm.model.tig00020710.72 no hits & (original description: no original description) 0.8927918760856455 59 evm.model.tig00021246.9 no hits & (original description: no original description) 0.8924437214804427 65 evm.model.tig00020912.59 no hits & (original description: no original description) 0.8922684675740149 61 evm.model.tig00000194.87 no hits & (original description: no original description) 0.89186028443822 85 evm.model.tig00020693.26 no hits & (original description: no original description) 0.889421233116306 76 evm.model.tig00000514.12 no hits & (original description: no original description) 0.8887955679995894 68 evm.model.tig00020675.72 no hits & (original description: no original description) 0.8887823613199322 69 evm.model.tig00000912.36 (at5g65110 : 535.0) Encodes an acyl-CoA oxidase presumably involved in long chain fatty acid biosynthesis.; acyl-CoA oxidase 2 (ACX2); CONTAINS InterPro DOMAIN/s: Acyl-CoA oxidase/dehydrogenase, type1/2, C-terminal (InterPro:IPR013764), Acyl-CoA oxidase/dehydrogenase, type 1 (InterPro:IPR006090), Acyl-CoA dehydrogenase/oxidase (InterPro:IPR009100), Acyl-CoA oxidase (InterPro:IPR012258), Acyl-CoA oxidase/dehydrogenase, central domain (InterPro:IPR006091), Acyl-CoA oxidase, C-terminal (InterPro:IPR002655), Acyl-CoA dehydrogenase/oxidase C-terminal (InterPro:IPR009075); BEST Arabidopsis thaliana protein match is: acyl-CoA oxidase 3 (TAIR:AT1G06290.1); Has 15850 Blast hits to 15835 proteins in 1495 species: Archae - 314; Bacteria - 10867; Metazoa - 1644; Fungi - 650; Plants - 316; Viruses - 0; Other Eukaryotes - 2059 (source: NCBI BLink). & (o64894|acox2_cucma : 534.0) Acyl-coenzyme A oxidase, peroxisomal precursor (EC 1.3.3.6) (AOX) (Long-chain acyl-CoA oxidase) - Cucurbita maxima (Pumpkin) (Winter squash) & (reliability: 1070.0) & (original description: no original description) 0.8887398077752383 70 evm.model.tig00000455.30 no hits & (original description: no original description) 0.8887268412864285 71 evm.model.tig00001302.11 no hits & (original description: no original description) 0.8831096246816323 79 evm.model.tig00000093.243 (at4g16440 : 120.0) Encodes a [FeFe]-hydrogenase-like protein named Gollum (for Growth in different Oxygen LeveLs inflUences Morphogenesis). Heterologous expression of Gollum in E. coli indicates that it probably contains two [Fe-S] clusters with different magnetic properties. Sequence alignment analysis indicates that these two clusters would be topologically equivalent to the mesial and proximal [Fe-S] centers of [FeFe]-hydrogenases. Knockdown mutants (RNAi) show a dwarf phenotype at the normal atmospheric partial oxygen pressure of 21 kPa. This dwarf phenotype could be rescued by growing the plant under low oxygen pressure (5kPa), suggesting a role for this gene in oxygen sensing.; ferredoxin hydrogenases; CONTAINS InterPro DOMAIN/s: Iron hydrogenase, large subunit, C-terminal (InterPro:IPR004108), Iron hydrogenase (InterPro:IPR009016), Iron hydrogenase, small subunit-like (InterPro:IPR003149); Has 2574 Blast hits to 2544 proteins in 612 species: Archae - 1; Bacteria - 1826; Metazoa - 221; Fungi - 188; Plants - 72; Viruses - 0; Other Eukaryotes - 266 (source: NCBI BLink). & (reliability: 240.0) & (original description: no original description) 0.8819878122242455 83 evm.model.tig00000310.58 no hits & (original description: no original description) 0.8811108433753239 87 evm.model.tig00000169.26 no hits & (original description: no original description) 0.880878486432534 88 evm.model.tig00000189.39 no hits & (original description: no original description) 0.8800268849535544 95 evm.model.tig00020685.39 (at2g32260 : 89.4) phosphorylcholine cytidylyltransferase (CCT1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cytidyltransferase-related (InterPro:IPR004821), Cytidylyltransferase (InterPro:IPR004820); BEST Arabidopsis thaliana protein match is: phosphorylcholine cytidylyltransferase2 (TAIR:AT4G15130.1); Has 2466 Blast hits to 2109 proteins in 632 species: Archae - 27; Bacteria - 791; Metazoa - 538; Fungi - 333; Plants - 250; Viruses - 5; Other Eukaryotes - 522 (source: NCBI BLink). & (reliability: 178.8) & (original description: no original description) 0.8796507205957613 96 evm.model.tig00000331.3 no hits & (original description: no original description) 0.8794616120715215 98 evm.model.tig00000076.163 no hits & (original description: no original description) 0.87934444330251 100