Sequence Description Alias PCC hrr evm.model.tig00020553.29 no hits & (original description: no original description) 0.9046746300628467 1 evm.model.tig00000767.14 no hits & (original description: no original description) 0.8978201127016161 2 evm.model.tig00020830.116 no hits & (original description: no original description) 0.8782087233461279 3 evm.model.tig00000133.10 no hits & (original description: no original description) 0.8565716182099107 4 evm.model.tig00000615.45 no hits & (original description: no original description) 0.8518649196836925 21 evm.model.tig00000545.19 no hits & (original description: no original description) 0.8511662819852603 7 evm.model.tig00000949.18 no hits & (original description: no original description) 0.8466559136884723 15 evm.model.tig00000254.119 no hits & (original description: no original description) 0.8455414569902305 79 evm.model.tig00000113.28 no hits & (original description: no original description) 0.8419470735104684 80 evm.model.tig00020531.53 (at5g13010 : 988.0) embryo defective 3011 (EMB3011); FUNCTIONS IN: RNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: ATP-dependent RNA helicase, putative (TAIR:AT3G26560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1976.0) & (original description: no original description) 0.8351334426450996 91 evm.model.tig00000545.20 no hits & (original description: no original description) 0.8312157152852552 27 evm.model.tig00020904.73 no hits & (original description: no original description) 0.8270934865305385 39 evm.model.tig00000949.17 (at5g41360 : 573.0) Encodes XPB2, a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies.; homolog of Xeroderma pigmentosum complementation group B 2 (XPB2); FUNCTIONS IN: in 7 functions; INVOLVED IN: response to UV-B, N-terminal protein myristoylation; EXPRESSED IN: whole plant; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001), Xeroderma pigmentosum group B protein (XP-B) (InterPro:IPR001161), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: homolog of xeroderma pigmentosum complementation group B 1 (TAIR:AT5G41370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1146.0) & (original description: no original description) 0.8220243101010487 13 evm.model.tig00021432.15 (at2g32040 : 94.4) The At2g32040 gene product has been demonstrated to mediate folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. The gene is expressed in both chloroplast and non-green plastids.; Major facilitator superfamily protein; FUNCTIONS IN: folic acid transporter activity, 5-formyltetrahydrofolate transporter activity, transporter activity; INVOLVED IN: transport; LOCATED IN: membrane, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily, general substrate transporter (InterPro:IPR016196), Biopterin transport-related protein BT1 (InterPro:IPR004324); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G25050.1); Has 2017 Blast hits to 1915 proteins in 421 species: Archae - 4; Bacteria - 671; Metazoa - 3; Fungi - 33; Plants - 272; Viruses - 0; Other Eukaryotes - 1034 (source: NCBI BLink). & (reliability: 188.8) & (original description: no original description) 0.8218631819953747 37 evm.model.tig00020556.44 (at3g27710 : 223.0) ARIADNE 3 (ARI3); FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G34370.1); Has 3131 Blast hits to 3105 proteins in 234 species: Archae - 0; Bacteria - 4; Metazoa - 1303; Fungi - 627; Plants - 676; Viruses - 17; Other Eukaryotes - 504 (source: NCBI BLink). & (reliability: 446.0) & (original description: no original description) 0.8186975104301908 15 evm.model.tig00000254.115 (at4g01400 : 358.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 40053 Blast hits to 12380 proteins in 263 species: Archae - 4; Bacteria - 27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses - 0; Other Eukaryotes - 935 (source: NCBI BLink). & (reliability: 716.0) & (original description: no original description) 0.8165856830245571 16 evm.model.tig00000622.11 no hits & (original description: no original description) 0.8119426196502375 22 evm.model.tig00000113.29 no hits & (original description: no original description) 0.809854335504099 34 evm.model.tig00000882.14 no hits & (original description: no original description) 0.8081743558627348 21 evm.model.tig00020563.7 (at5g35410 : 142.0) encodes a member of the CBL-interacting protein kinase family, is a regulatory component controlling plant potassium nutrition; SALT OVERLY SENSITIVE 2 (SOS2); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 8 (TAIR:AT4G24400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 131.0) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 284.0) & (original description: no original description) 0.8074085128420376 24 evm.model.tig00021374.5 no hits & (original description: no original description) 0.8045045499703791 23 evm.model.tig00000269.96 no hits & (original description: no original description) 0.7951751201575341 26 evm.model.tig00021719.14 no hits & (original description: no original description) 0.7950532441730053 98 evm.model.tig00021036.26 no hits & (original description: no original description) 0.7937027555943985 29 evm.model.tig00021179.18 no hits & (original description: no original description) 0.7927841862152846 30 evm.model.tig00021072.15 no hits & (original description: no original description) 0.7897180879333565 33 evm.model.tig00020938.3 no hits & (original description: no original description) 0.7893436863214384 34 evm.model.tig00000254.125 no hits & (original description: no original description) 0.7891341757831641 40 evm.model.tig00020807.8 no hits & (original description: no original description) 0.7889107420691657 36 evm.model.tig00000254.95 (q9ld46|crd1_chlre : 392.0) Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1, chloroplast precursor (EC 1.14.13.81) (Mg-protoporphyrin IX monomethyl ester oxidative cyclase 1) (Copper response defect 1 protein) (Copper-response target 1 protein) & (at3g56940 : 375.0) Encodes a putative ZIP protein with varying mRNA accumulation in leaves, stems and roots. Has a consensus carboxylate-bridged di-iron binding site.; COPPER RESPONSE DEFECT 1 (CRD1); FUNCTIONS IN: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity, DNA binding; INVOLVED IN: chlorophyll biosynthetic process, oxidation reduction, photosynthesis; LOCATED IN: chloroplast thylakoid membrane, chloroplast inner membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase (InterPro:IPR008434), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Rubrerythrin (InterPro:IPR003251). & (reliability: 750.0) & (original description: no original description) 0.7888644766613372 37 evm.model.tig00020849.14 no hits & (original description: no original description) 0.7869033433096403 40 evm.model.tig00000123.19 (at4g19670 : 110.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G60250.1); Has 3330 Blast hits to 3305 proteins in 225 species: Archae - 1; Bacteria - 6; Metazoa - 1257; Fungi - 660; Plants - 920; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink). & (reliability: 220.0) & (original description: no original description) 0.7867782051501233 54 evm.model.tig00000955.35 no hits & (original description: no original description) 0.7833864297546671 45 evm.model.tig00001154.12 (at4g38740 : 131.0) Encodes cytosolic cyclophilin ROC1.; rotamase CYP 1 (ROC1); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, response to cadmium ion, signal transduction; LOCATED IN: cytosol, apoplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1); Has 16514 Blast hits to 16480 proteins in 2670 species: Archae - 108; Bacteria - 6825; Metazoa - 2927; Fungi - 1383; Plants - 1289; Viruses - 4; Other Eukaryotes - 3978 (source: NCBI BLink). & (p24525|cyph_brana : 129.0) Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-binding protein) - Brassica napus (Rape) & (reliability: 262.0) & (original description: no original description) 0.7827381602205049 46 evm.model.tig00020801.42 no hits & (original description: no original description) 0.7821029761250878 48 evm.model.tig00020964.20 no hits & (original description: no original description) 0.7803387794384512 49 evm.model.tig00020938.4 no hits & (original description: no original description) 0.7793441734888367 51 evm.model.tig00000342.51 (at5g55760 : 167.0) Encodes SRT1, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).; sirtuin 1 (SRT1); FUNCTIONS IN: NAD binding, DNA binding, zinc ion binding, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: protein amino acid deacetylation, chromatin silencing, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: chromatin silencing complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent histone deacetylase, silent information regulator Sir2 (InterPro:IPR003000); BEST Arabidopsis thaliana protein match is: sirtuin 2 (TAIR:AT5G09230.7); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 334.0) & (original description: no original description) 0.7781762584689231 52 evm.model.tig00021435.20 no hits & (original description: no original description) 0.7781268809185812 53 evm.model.tig00021432.8 (at3g10640 : 113.0) VPS60.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: SNF7 family protein (TAIR:AT5G04850.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 226.0) & (original description: no original description) 0.7780121234652077 54 evm.model.tig00000269.79 no hits & (original description: no original description) 0.7730308002197315 61 evm.model.tig00020539.45 no hits & (original description: no original description) 0.7712514109717418 65 evm.model.tig00001001.28 (p93411|ccnc_orysa : 145.0) G1/S-specific cyclin C-type - Oryza sativa (Rice) & (at5g48630 : 123.0) Cyclin family protein; FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Transcription regulator cyclin (InterPro:IPR015429), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G48640.1). & (reliability: 246.0) & (original description: no original description) 0.7708922172759094 78 evm.model.tig00000430.68 no hits & (original description: no original description) 0.7689873557742889 90 evm.model.tig00000767.18 no hits & (original description: no original description) 0.7685166544469989 71 evm.model.tig00000796.9 no hits & (original description: no original description) 0.7677983750900429 72 evm.model.tig00021590.13 (at2g44270 : 429.0) Encodes ROL5, a repressor of lrx1 mutants that develop aberrant root hairs. ROL5 is a homolog of yeast Ncs6p that affects TOR signaling. The target of rapamycin (TOR) pathway is a major regulator of cell growth in eukaryotes, and inhibition of this pathway by rapamycin reduces cell growth. ROL5 might function as a mitochondrial component of the TOR pathway that influences the plant's response to ROS (reactive oxygen species).; repressor of lrx1 (ROL5); FUNCTIONS IN: ATP binding; INVOLVED IN: response to reactive oxygen species, regulation of plant-type cell wall organization or biogenesis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), PP-loop (InterPro:IPR011063), 2-thiocytidine tRNA biosynthesis protein, TtcA (InterPro:IPR012089); BEST Arabidopsis thaliana protein match is: 2-thiocytidine tRNA biosynthesis protein, TtcA (TAIR:AT1G76170.1). & (reliability: 858.0) & (original description: no original description) 0.7653185270973778 80 evm.model.tig00000178.24 no hits & (original description: no original description) 0.7647607533766169 81 evm.model.tig00020710.108 no hits & (original description: no original description) 0.7647570624362477 82 evm.model.tig00020849.13 no hits & (original description: no original description) 0.7631833833530136 85 evm.model.tig00000448.89 no hits & (original description: no original description) 0.7589948123728841 90 evm.model.tig00020703.4 no hits & (original description: no original description) 0.7572411721433964 92 evm.model.tig00000310.14 no hits & (original description: no original description) 0.7562485034712758 93 evm.model.tig00000042.63 no hits & (original description: no original description) 0.7558831012431572 94 evm.model.tig00000042.175 no hits & (original description: no original description) 0.7550539122982691 95 evm.model.tig00000498.28 no hits & (original description: no original description) 0.7548055829844279 96 evm.model.tig00020710.31 no hits & (original description: no original description) 0.7539667499910397 100