Sequence Description Alias PCC hrr evm.model.tig00000880.21 (at4g14570 : 105.0) acylaminoacyl-peptidase-related; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S9, prolyl oligopeptidase, catalytic domain (InterPro:IPR001375); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G36210.1); Has 9037 Blast hits to 9017 proteins in 1444 species: Archae - 238; Bacteria - 5246; Metazoa - 1023; Fungi - 365; Plants - 298; Viruses - 0; Other Eukaryotes - 1867 (source: NCBI BLink). & (reliability: 210.0) & (original description: no original description) 0.9462431422163363 2 evm.model.tig00000391.24 no hits & (original description: no original description) 0.9312693868314499 2 evm.model.tig00021350.2 (at5g04710 : 392.0) Zn-dependent exopeptidases superfamily protein; FUNCTIONS IN: aminopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M18, aminopeptidase I (InterPro:IPR001948); BEST Arabidopsis thaliana protein match is: Zn-dependent exopeptidases superfamily protein (TAIR:AT5G60160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 784.0) & (original description: no original description) 0.9297046189901211 3 evm.model.tig00000912.41 no hits & (original description: no original description) 0.9233023529729556 4 evm.model.tig00000383.73 no hits & (original description: no original description) 0.9204859318402947 30 evm.model.tig00020960.63 no hits & (original description: no original description) 0.9157319341062699 14 evm.model.tig00000718.50 no hits & (original description: no original description) 0.9104231322955268 31 evm.model.tig00000076.172 no hits & (original description: no original description) 0.907152670785629 8 evm.model.tig00021441.6 no hits & (original description: no original description) 0.9035463124890192 29 evm.model.tig00001234.3 no hits & (original description: no original description) 0.9005378158555684 20 evm.model.tig00021432.41 no hits & (original description: no original description) 0.8997053278214953 78 evm.model.tig00020572.22 no hits & (original description: no original description) 0.8950757506235663 54 evm.model.tig00021293.29 no hits & (original description: no original description) 0.8941208380444085 33 evm.model.tig00020960.29 (at3g27925 : 110.0) Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition.; DegP protease 1 (DEGP1); FUNCTIONS IN: serine-type peptidase activity, serine-type endopeptidase activity; INVOLVED IN: photosystem II repair, proteolysis, protein catabolic process; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: Trypsin family protein with PDZ domain (TAIR:AT5G39830.1); Has 16838 Blast hits to 16778 proteins in 2643 species: Archae - 108; Bacteria - 11023; Metazoa - 354; Fungi - 149; Plants - 421; Viruses - 7; Other Eukaryotes - 4776 (source: NCBI BLink). & (reliability: 220.0) & (original description: no original description) 0.892917471638532 15 evm.model.tig00020909.58 no hits & (original description: no original description) 0.8914007874718135 50 evm.model.tig00020510.48 no hits & (original description: no original description) 0.8886257731721934 86 evm.model.tig00000405.23 (at4g35470 : 99.0) Encodes PIRL4, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction.; plant intracellular ras group-related LRR 4 (PIRL4); INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 5 (TAIR:AT2G17440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 198.0) & (original description: no original description) 0.8878561066542076 19 evm.model.tig00000144.183 no hits & (original description: no original description) 0.8878206871741418 51 evm.model.tig00020780.72 no hits & (original description: no original description) 0.8860889341980137 38 evm.model.tig00000655.25 no hits & (original description: no original description) 0.883893186219246 71 evm.model.tig00020909.59 no hits & (original description: no original description) 0.8836948478423451 23 evm.model.tig00001073.10 no hits & (original description: no original description) 0.8826694493830279 86 evm.model.tig00020848.66 (at2g44980 : 201.0) SNF2 domain-containing protein / helicase domain-containing protein; FUNCTIONS IN: transcription regulator activity, helicase activity, DNA binding, nucleic acid binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2); Has 17488 Blast hits to 15031 proteins in 1958 species: Archae - 101; Bacteria - 5047; Metazoa - 3666; Fungi - 3968; Plants - 1607; Viruses - 135; Other Eukaryotes - 2964 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 190.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 402.0) & (original description: no original description) 0.8812970595932267 36 evm.model.tig00001214.6 no hits & (original description: no original description) 0.8812061124342466 29 evm.model.tig00020830.128 "(at1g31800 : 138.0) Encodes a protein with &#946;-ring carotenoid hydroxylase activity.; ""cytochrome P450, family 97, subfamily A, polypeptide 3"" (CYP97A3); FUNCTIONS IN: carotene beta-ring hydroxylase activity, oxygen binding; INVOLVED IN: carotenoid biosynthetic process, xanthophyll biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: Cytochrome P450 superfamily protein (TAIR:AT3G53130.1); Has 33118 Blast hits to 32966 proteins in 1677 species: Archae - 61; Bacteria - 4341; Metazoa - 11636; Fungi - 7136; Plants - 8575; Viruses - 3; Other Eukaryotes - 1366 (source: NCBI BLink). & (o48921|c97b2_soybn : 85.1) Cytochrome P450 97B2 (EC 1.14.-.-) - Glycine max (Soybean) & (reliability: 276.0) & (original description: no original description)" 0.8811620726567428 81 evm.model.tig00000865.47 (at5g63910 : 80.5) Encodes a farnesylcysteine lyase (EC 1.8.3.5) involved in a salvage /detoxification pathway of farnesylcysteine (FC) residues that are liberated during the degradation of prenylated proteins. Because FC is a competitive inhibitor of prenylcysteine methyltransferases involved in the down-regulation of ABA signaling, fcly mutants with elevated FC levels are hypersensitive to ABA. The protein also appears to be glycosylated when translated in vitro in the presence of microsomal membranes and it likely requires FAD for enzymatic activity.; farnesylcysteine lyase (FCLY); FUNCTIONS IN: prenylcysteine oxidase activity; INVOLVED IN: prenylated protein catabolic process, abscisic acid mediated signaling pathway, farnesyl diphosphate metabolic process; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Prenylcysteine lyase (InterPro:IPR010795), Prenylcysteine oxidase (InterPro:IPR017046); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 161.0) & (original description: no original description) 0.8798638134672252 98 evm.model.tig00020943.78 no hits & (original description: no original description) 0.8794677850261783 33 evm.model.tig00020961.92 (at2g16790 : 83.2) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: shikimate kinase activity, kinase activity, ATP binding; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623), Carbohydrate kinase, thermoresistant glucokinase (InterPro:IPR006001); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 166.4) & (original description: no original description) 0.8778442905489858 36 evm.model.tig00000388.19 no hits & (original description: no original description) 0.8778425721885522 52 evm.model.tig00000367.16 no hits & (original description: no original description) 0.8771835099686673 51 evm.model.tig00000101.1 no hits & (original description: no original description) 0.8753678812803647 61 evm.model.tig00020723.105 no hits & (original description: no original description) 0.8746152312439307 47 evm.model.tig00020875.10 no hits & (original description: no original description) 0.8735233598712457 50 evm.model.tig00021612.18 no hits & (original description: no original description) 0.873048780617975 91 evm.model.tig00000367.20 no hits & (original description: no original description) 0.871430598628029 58 evm.model.tig00000178.52 no hits & (original description: no original description) 0.8714029806068142 92 evm.model.tig00020592.11 (at3g54190 : 282.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G38630.1); Has 138 Blast hits to 136 proteins in 32 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 103; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink). & (reliability: 564.0) & (original description: no original description) 0.8713631696947088 60 evm.model.tig00001067.15 no hits & (original description: no original description) 0.8711664848373368 61 evm.model.tig00000663.52 no hits & (original description: no original description) 0.8694510482102646 64 evm.model.tig00001208.11 (at3g63520 : 206.0) Encodes a protein with 9-<i>cis</i>-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including &#946;-carotene, lutein, zeaxanthin, and all-<i>trans</i>-violaxanthin. When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial. The enzyme did not cleave as efficiently carotenoids containing 9-<i>cis</i>-double or allenic bonds.; carotenoid cleavage dioxygenase 1 (CCD1); FUNCTIONS IN: 9-cis-epoxycarotenoid dioxygenase activity; INVOLVED IN: response to water deprivation, carotene catabolic process, xanthophyll catabolic process, carotenoid catabolic process; LOCATED IN: plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 4 (TAIR:AT4G19170.1); Has 2926 Blast hits to 2896 proteins in 500 species: Archae - 16; Bacteria - 808; Metazoa - 317; Fungi - 194; Plants - 866; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink). & (reliability: 412.0) & (original description: no original description) 0.867663220341116 69 evm.model.tig00000093.157 no hits & (original description: no original description) 0.8676611738454763 91 evm.model.tig00021126.19 no hits & (original description: no original description) 0.8662633909600843 99 evm.model.tig00020592.58 (at3g18500 : 100.0) DNAse I-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G73875.1). & (reliability: 199.6) & (original description: no original description) 0.8660505645888088 75 evm.model.tig00020964.21 (at1g50170 : 99.0) encodes sirohydrochlorin ferrochelatase catalyzing the last step of the siroheme biosynthesis; sirohydrochlorin ferrochelatase B (SIRB); FUNCTIONS IN: sirohydrochlorin ferrochelatase activity; INVOLVED IN: response to oxidative stress, siroheme biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CbiX (InterPro:IPR002762); Has 1927 Blast hits to 1707 proteins in 620 species: Archae - 186; Bacteria - 1447; Metazoa - 1; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink). & (reliability: 198.0) & (original description: no original description) 0.8652155036392386 77 evm.model.tig00000658.31 (at1g02020 : 276.0) nitroreductase family protein; FUNCTIONS IN: oxidoreductase activity, acting on NADH or NADPH, nitrogenous group as acceptor, oxidoreductase activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nitroreductase-like (InterPro:IPR000415); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 552.0) & (original description: no original description) 0.8651156719079452 78 evm.model.tig00000076.173 no hits & (original description: no original description) 0.8649548683245677 79 evm.model.tig00000605.17 no hits & (original description: no original description) 0.8619341009411361 86 evm.model.tig00020685.25 no hits & (original description: no original description) 0.8606800009616605 92 evm.model.tig00000451.18 (at1g48790 : 128.0) associated molecule with the SH3 domain of STAM 1 (AMSH1); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: associated molecule with the SH3 domain of STAM 3 (TAIR:AT4G16144.1); Has 1172 Blast hits to 1019 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 476; Fungi - 293; Plants - 278; Viruses - 0; Other Eukaryotes - 125 (source: NCBI BLink). & (reliability: 256.0) & (original description: no original description) 0.8604998148056621 93 evm.model.tig00000058.11 no hits & (original description: no original description) 0.8600299966644585 96