Sequence Description Alias PCC hrr evm.model.tig00021123.32 (at5g46420 : 101.0) 16S rRNA processing protein RimM family; FUNCTIONS IN: ribosome binding, nucleotidyltransferase activity; INVOLVED IN: metabolic process, rRNA processing, ribosome biogenesis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PRC-barrel (InterPro:IPR007903), UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618), RimM protein (InterPro:IPR002676), 16S rRNA processing protein RimM (InterPro:IPR011961); BEST Arabidopsis thaliana protein match is: N-acetylglucosamine-1-phosphate uridylyltransferase 1 (TAIR:AT1G31070.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 202.0) & (original description: no original description) 0.9234558753423194 1 evm.model.tig00001424.12 (at1g02330 : 89.4) CONTAINS InterPro DOMAIN/s: Hepatocellular carcinoma-associated antigen 59 (InterPro:IPR010756); Has 1239 Blast hits to 998 proteins in 204 species: Archae - 4; Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87; Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink). & (reliability: 178.8) & (original description: no original description) 0.8808613977739009 10 evm.model.tig00000350.55 no hits & (original description: no original description) 0.8616273741527948 11 evm.model.tig00000718.4 (at1g73110 : 198.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATPase activity, ATP binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); BEST Arabidopsis thaliana protein match is: rubisco activase (TAIR:AT2G39730.1); Has 469 Blast hits to 469 proteins in 170 species: Archae - 27; Bacteria - 71; Metazoa - 17; Fungi - 60; Plants - 256; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). & (o64981|rca_phavu : 187.0) Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) - Phaseolus vulgaris (Kidney bean) (French bean) & (reliability: 396.0) & (original description: no original description) 0.8567883684957842 33 evm.model.tig00020918.2 (at5g61150 : 95.5) Encodes highly hydrophilic protein involved in positively regulating FLC expression. Mutants are early flowering and show a loss of FLC expression in the absence of cold.; VERNALIZATION INDEPENDENCE 4 (VIP4); INVOLVED IN: negative regulation of flower development, vernalization response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leo1-like protein (InterPro:IPR007149); Has 69096 Blast hits to 31991 proteins in 1682 species: Archae - 184; Bacteria - 8816; Metazoa - 27909; Fungi - 8257; Plants - 3470; Viruses - 882; Other Eukaryotes - 19578 (source: NCBI BLink). & (reliability: 191.0) & (original description: no original description) 0.8505141883553097 13 evm.model.tig00000849.22 no hits & (original description: no original description) 0.8469938208676635 44 evm.model.tig00000704.18 no hits & (original description: no original description) 0.8433217179262252 14 evm.model.tig00000480.70 no hits & (original description: no original description) 0.8426269469446857 33 evm.model.tig00000912.35 no hits & (original description: no original description) 0.8353632813782033 14 evm.model.tig00000342.36 no hits & (original description: no original description) 0.8340041937400386 74 evm.model.tig00020848.24 no hits & (original description: no original description) 0.8336833862874421 11 evm.model.tig00020848.18 (at1g28560 : 108.0) Encodes a protein similar to human SNAP50. Mutants display different temperature sensitivities in the dedifferentiation of cells from different organs. Mutation inhibits the dedifferentiation-associated accumulation of U-snRNAs and some other small RNA species encoded by independent-type genes carrying the USE and TATA box. Required for the elevation of cell proliferation competence in hypocotyl dedifferentiation.; SHOOT REDIFFERENTIATION DEFECTIVE 2 (SRD2); FUNCTIONS IN: DNA binding; INVOLVED IN: snRNA transcription, organ morphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: snRNA-activating protein complex, subunit 3, C-terminal (InterPro:IPR022042); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description) 0.826115105393746 16 evm.model.tig00000319.14 no hits & (original description: no original description) 0.8216786463122729 14 evm.model.tig00000741.23 no hits & (original description: no original description) 0.8152618139544905 37 evm.model.tig00000903.29 (at2g25950 : 140.0) CONTAINS InterPro DOMAIN/s: Proteasome-interacting thioredoxin-like domain, C-terminal (InterPro:IPR010400); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1000) (TAIR:AT3G04780.1); Has 551 Blast hits to 551 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 233; Fungi - 139; Plants - 82; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink). & (reliability: 280.0) & (original description: no original description) 0.8140683025813994 18 evm.model.tig00000640.5 (at1g57860 : 125.0) Translation protein SH3-like family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: juvenile leaf; CONTAINS InterPro DOMAIN/s: Translation protein SH3-like (InterPro:IPR008991), Ribosomal protein L21e (InterPro:IPR001147), Ribosomal protein L21e, conserved site (InterPro:IPR018259); BEST Arabidopsis thaliana protein match is: Translation protein SH3-like family protein (TAIR:AT1G57660.1); Has 1436 Blast hits to 1436 proteins in 381 species: Archae - 214; Bacteria - 0; Metazoa - 706; Fungi - 179; Plants - 136; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description) 0.8027421734761716 26 evm.model.tig00020909.40 (at2g44050 : 94.7) 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase [Arabidopsis thaliana]. Acts in the jasmonic acid signaling pathway.; COI1 SUPPRESSOR1 (COS1); FUNCTIONS IN: 6,7-dimethyl-8-ribityllumazine synthase activity; INVOLVED IN: riboflavin biosynthetic process, jasmonic acid mediated signaling pathway; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 6,7-dimethyl-8-ribityllumazine synthase (InterPro:IPR002180), 6,7-dimethyl-8-ribityllumazine synthase, chloroplast (InterPro:IPR017420); Has 7351 Blast hits to 7351 proteins in 2325 species: Archae - 190; Bacteria - 4938; Metazoa - 2; Fungi - 209; Plants - 81; Viruses - 0; Other Eukaryotes - 1931 (source: NCBI BLink). & (q9xh32|risb_spiol : 92.4) 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor (EC 2.5.1.9) (DMRL synthase) (Lumazine synthase) - Spinacia oleracea (Spinach) & (reliability: 189.4) & (original description: no original description) 0.8026579991779739 25 evm.model.tig00000448.27 no hits & (original description: no original description) 0.8018282292355361 23 evm.model.tig00021348.65 (at4g26570 : 153.0) member of AtCBLs (Calcineurin B-like Calcium Sensor Proteins); calcineurin B-like 3 (CBL3); FUNCTIONS IN: calcium ion binding; INVOLVED IN: detection of calcium ion; LOCATED IN: plasma membrane, vacuole, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Recoverin (InterPro:IPR001125), EF-HAND 2 (InterPro:IPR018249), Calcineurin B protein (InterPro:IPR015757), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: calcineurin B-like protein 2 (TAIR:AT5G55990.1); Has 7988 Blast hits to 7953 proteins in 833 species: Archae - 0; Bacteria - 10; Metazoa - 3891; Fungi - 1253; Plants - 1902; Viruses - 0; Other Eukaryotes - 932 (source: NCBI BLink). & (reliability: 306.0) & (original description: no original description) 0.8014113821852119 79 evm.model.tig00021435.5 no hits & (original description: no original description) 0.8005981703395089 26 evm.model.tig00000342.25 no hits & (original description: no original description) 0.79838821875088 82 evm.model.tig00021352.50 (at3g28430 : 152.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function FPL (InterPro:IPR019155); Has 243 Blast hits to 233 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). & (reliability: 304.0) & (original description: no original description) 0.7934228039961565 32 evm.model.tig00020903.29 (at3g62940 : 115.0) Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: SEC-C motif-containing protein / OTU-like cysteine protease family protein (TAIR:AT5G67170.1). & (reliability: 230.0) & (original description: no original description) 0.7929261075855031 33 evm.model.tig00000194.38 (at4g02720 : 176.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF926 (InterPro:IPR009269); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 352.0) & (original description: no original description) 0.7918257495869496 72 evm.model.tig00001181.12 no hits & (original description: no original description) 0.7897583359739634 88 evm.model.tig00020704.77 no hits & (original description: no original description) 0.7847877704479567 51 evm.model.tig00000829.2 no hits & (original description: no original description) 0.7844907951132114 55 evm.model.tig00021682.9 (q9xet4|rs7_secce : 233.0) 40S ribosomal protein S7 - Secale cereale (Rye) & (at1g48830 : 232.0) Ribosomal protein S7e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, cell wall, plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S7e (InterPro:IPR000554); BEST Arabidopsis thaliana protein match is: Ribosomal protein S7e family protein (TAIR:AT3G02560.2); Has 785 Blast hits to 785 proteins in 311 species: Archae - 0; Bacteria - 0; Metazoa - 354; Fungi - 147; Plants - 158; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink). & (reliability: 464.0) & (original description: no original description) 0.7841654619073984 41 evm.model.tig00020918.1 (at5g37290 : 82.4) ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 164.8) & (original description: no original description) 0.7825092809825418 97 evm.model.tig00001264.16 (at5g58020 : 125.0) unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF602 (InterPro:IPR006735); Has 385 Blast hits to 385 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 117; Plants - 50; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description) 0.7824871884823157 43 evm.model.tig00021348.24 no hits & (original description: no original description) 0.7814659314834105 74 evm.model.tig00000248.65 (at1g25682 : 230.0) Family of unknown function (DUF572) ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF572 (InterPro:IPR007590); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF572) (TAIR:AT1G25988.1); Has 717 Blast hits to 715 proteins in 213 species: Archae - 0; Bacteria - 6; Metazoa - 235; Fungi - 232; Plants - 115; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink). & (reliability: 460.0) & (original description: no original description) 0.7806818375643129 47 evm.model.tig00021181.3 no hits & (original description: no original description) 0.7793432220332206 50 evm.model.tig00000388.35 (at5g12320 : 111.0) ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G19150.1); Has 86458 Blast hits to 28632 proteins in 1360 species: Archae - 129; Bacteria - 7616; Metazoa - 44184; Fungi - 6856; Plants - 3179; Viruses - 915; Other Eukaryotes - 23579 (source: NCBI BLink). & (reliability: 222.0) & (original description: no original description) 0.7789543752417235 50 evm.model.tig00021464.14 no hits & (original description: no original description) 0.7777857630647073 51 evm.model.tig00000525.3 no hits & (original description: no original description) 0.762996026627367 63 evm.model.tig00001264.19 no hits & (original description: no original description) 0.7589149250822669 66 evm.model.tig00001229.14 (at1g27530 : 253.0) CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-fold modifier-conjugating enzyme 1 (InterPro:IPR014806); Has 269 Blast hits to 269 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 175; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). & (reliability: 506.0) & (original description: no original description) 0.7585271497543526 67 evm.model.tig00000144.163 no hits & (original description: no original description) 0.7526878561309959 97 evm.model.tig00000248.67 no hits & (original description: no original description) 0.7523781233564589 77 evm.model.tig00021525.18 no hits & (original description: no original description) 0.7523508396153912 77 evm.model.tig00000241.36 (at3g03420 : 154.0) Ku70-binding family protein; CONTAINS InterPro DOMAIN/s: Peptidase M76, ATP23 (InterPro:IPR019165); Has 337 Blast hits to 337 proteins in 174 species: Archae - 0; Bacteria - 0; Metazoa - 95; Fungi - 144; Plants - 46; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink). & (reliability: 308.0) & (original description: no original description) 0.740868757881644 90 evm.model.tig00000663.23 no hits & (original description: no original description) 0.7408072956042269 91 evm.model.tig00000350.12 no hits & (original description: no original description) 0.7387781747117557 92 evm.model.tig00000227.2 no hits & (original description: no original description) 0.7340083834018868 97 evm.model.tig00000449.17 no hits & (original description: no original description) 0.7316918788226355 100