Sequence Description Alias PCC hrr evm.model.tig00000670.30 (at2g44680 : 263.0) Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock.; casein kinase II beta subunit 4 (CKB4); CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: casein kinase II beta chain 3 (TAIR:AT3G60250.2); Has 1093 Blast hits to 1091 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 429; Fungi - 285; Plants - 156; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink). & (reliability: 526.0) & (original description: no original description) 0.8305846725424193 12 evm.model.tig00020554.161 (at5g61970 : 169.0) signal recognition particle-related / SRP-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 338.0) & (original description: no original description) 0.8206042453052068 3 evm.model.tig00020538.11 (at2g31500 : 87.0) member of Calcium Dependent Protein Kinase; calcium-dependent protein kinase 24 (CPK24); FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, N-terminal protein myristoylation; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Serine/threonine-protein kinase domain (InterPro:IPR002290), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), EF-HAND 2 (InterPro:IPR018249), Calcium-dependent protein kinase (InterPro:IPR020642), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: calcium-dependent protein kinase 19 (TAIR:AT5G19450.2); Has 123765 Blast hits to 119993 proteins in 3778 species: Archae - 168; Bacteria - 14541; Metazoa - 46326; Fungi - 15514; Plants - 24284; Viruses - 457; Other Eukaryotes - 22475 (source: NCBI BLink). & (q6ret6|ccamk_pea : 83.2) Calcium and calcium/calmodulin-dependent serine/threonine-protein kinase (EC 2.7.11.17) (PsCCaMK) (Ps-SYM9) (Fragment) - Pisum sativum (Garden pea) & (reliability: 170.2) & (original description: no original description) 0.8103100098552498 47 evm.model.tig00000615.27 no hits & (original description: no original description) 0.7944234178181203 5 evm.model.tig00021493.34 no hits & (original description: no original description) 0.7936287434742474 53 evm.model.tig00020904.171 no hits & (original description: no original description) 0.7880794473543183 10 evm.model.tig00001628.7 (at5g10350 : 151.0) RNA-binding (RRM/RBD/RNP motifs) family protein; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G65260.1). & (reliability: 302.0) & (original description: no original description) 0.7831926469870116 35 evm.model.tig00021531.8 (at2g37340 : 155.0) encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks.; arginine/serine-rich zinc knuckle-containing protein 33 (RSZ33); FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (TAIR:AT3G53500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 310.0) & (original description: no original description) 0.7761204390975346 34 evm.model.tig00000889.34 no hits & (original description: no original description) 0.7702155906892637 20 evm.model.tig00000093.30 no hits & (original description: no original description) 0.7644355711470351 90 evm.model.tig00000692.13 (p46869|fla10_chlre : 574.0) Kinesin-like protein FLA10 (Protein KHP1) - Chlamydomonas reinhardtii & (at2g28620 : 292.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT3G45850.2); Has 49289 Blast hits to 35260 proteins in 1950 species: Archae - 481; Bacteria - 7561; Metazoa - 22029; Fungi - 4505; Plants - 3473; Viruses - 125; Other Eukaryotes - 11115 (source: NCBI BLink). & (reliability: 584.0) & (original description: no original description) 0.7620394837365859 31 evm.model.tig00021014.9 no hits & (original description: no original description) 0.7614753106995372 55 evm.model.tig00021464.15 (at4g15475 : 100.0) F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: EIN3-binding F box protein 2 (TAIR:AT5G25350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 200.0) & (original description: no original description) 0.7582467402764722 99 evm.model.tig00021352.41 no hits & (original description: no original description) 0.7571496454295671 78 evm.model.tig00000743.10 no hits & (original description: no original description) 0.7482855175447718 20 evm.model.tig00020704.44 no hits & (original description: no original description) 0.7459336922282288 88 evm.model.tig00000852.9 (at3g61860 : 165.0) encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined.; RSP31; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck, spliceosomal complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G46610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 330.0) & (original description: no original description) 0.745044110853187 41 evm.model.tig00001029.30 no hits & (original description: no original description) 0.7332702847255694 93 evm.model.tig00000383.62 no hits & (original description: no original description) 0.7147818403234623 82 evm.model.tig00020848.83 no hits & (original description: no original description) 0.7092699975045833 68 evm.model.tig00020710.122 no hits & (original description: no original description) 0.7083831724468052 61 evm.model.tig00001214.5 no hits & (original description: no original description) 0.706911058041074 51 evm.model.tig00001590.5 (at3g48540 : 92.0) Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine deaminase (InterPro:IPR015517); Has 3737 Blast hits to 3733 proteins in 1421 species: Archae - 65; Bacteria - 2323; Metazoa - 218; Fungi - 134; Plants - 52; Viruses - 89; Other Eukaryotes - 856 (source: NCBI BLink). & (reliability: 184.0) & (original description: no original description) 0.6992854006410959 63 evm.model.tig00000361.22 (at3g20550 : 204.0) Encodes a nuclear localized FHA (forhkead) domain containing protein.Mutant plants have shortened roots, delayed flowering time, altered floral organ number, defective floral organs and reduced fertility.Ddl mutants also show reduced levels of pri-miRNAs as well as mature miRNAs suggesting involvement in biogenesis of miRNAs. DDL does not affect transcription of miRNAs directly but may act through other proteins such as DCL.; DAWDLE (DDL); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell proliferation, production of miRNAs involved in gene silencing by miRNA; LOCATED IN: cytosol, nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24410.1); Has 20960 Blast hits to 11868 proteins in 728 species: Archae - 18; Bacteria - 1126; Metazoa - 10847; Fungi - 2610; Plants - 1671; Viruses - 61; Other Eukaryotes - 4627 (source: NCBI BLink). & (reliability: 408.0) & (original description: no original description) 0.6945319652298729 71 evm.model.tig00000361.23 no hits & (original description: no original description) 0.6927568986022026 74 evm.model.tig00020878.27 no hits & (original description: no original description) 0.6879946711183432 80