Sequence Description Alias PCC hrr evm.model.tig00001376.10 no hits & (original description: no original description) 0.9290686660332993 3 evm.model.tig00021073.37 (at2g26780 : 362.0) ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); Has 448 Blast hits to 380 proteins in 145 species: Archae - 0; Bacteria - 0; Metazoa - 160; Fungi - 190; Plants - 63; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). & (reliability: 724.0) & (original description: no original description) 0.9257658816908316 12 evm.model.tig00021122.15 (at4g32760 : 98.2) ENTH/VHS/GAT family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), VHS subgroup (InterPro:IPR018205), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT3G08790.1). & (reliability: 196.4) & (original description: no original description) 0.9228229597831581 19 evm.model.tig00021293.27 no hits & (original description: no original description) 0.922140890537124 29 evm.model.tig00020660.27 no hits & (original description: no original description) 0.9108606934379717 59 evm.model.tig00000402.15 no hits & (original description: no original description) 0.9096270891504388 15 evm.model.tig00000157.46 no hits & (original description: no original description) 0.9093316748691829 21 evm.model.tig00021591.10 no hits & (original description: no original description) 0.9071696185831009 13 evm.model.tig00000441.9 no hits & (original description: no original description) 0.9063377824776415 23 evm.model.tig00001181.9 (at1g54080 : 240.0) oligouridylate-binding protein 1A (UBP1A); FUNCTIONS IN: mRNA 3'-UTR binding; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G14100.1); Has 22193 Blast hits to 15481 proteins in 722 species: Archae - 0; Bacteria - 1057; Metazoa - 11734; Fungi - 2918; Plants - 4318; Viruses - 0; Other Eukaryotes - 2166 (source: NCBI BLink). & (q08935|roc1_nicsy : 98.6) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A) - Nicotiana sylvestris (Wood tobacco) & (reliability: 480.0) & (original description: no original description) 0.905389356546277 10 evm.model.tig00000498.96 no hits & (original description: no original description) 0.9044903476073487 15 evm.model.tig00020684.14 no hits & (original description: no original description) 0.9041616321173402 63 evm.model.tig00000767.25 (at5g16280 : 249.0) Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages. & (reliability: 498.0) & (original description: no original description) 0.9039991851892467 33 evm.model.tig00000980.21 (at5g63280 : 90.5) C2H2-like zinc finger protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger (C2H2 type) family protein (TAIR:AT5G40710.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 164.8) & (original description: no original description) 0.9036304835422906 14 evm.model.tig00020807.20 no hits & (original description: no original description) 0.9034226551298012 31 evm.model.tig00000498.95 no hits & (original description: no original description) 0.9031580235231449 16 evm.model.tig00021244.28 no hits & (original description: no original description) 0.8976254012331738 31 evm.model.tig00000889.14 (at3g11240 : 197.0) Encodes an arginyl-tRNA:protein arginyltransferase (ATE2), a component of the N-end rule pathway that targets protein degradation through the identity of the amino-terminal residue of specific protein substrates. Arabidopsis contains two ATE genes: At5g05700/ATE1, At3g11240/ATE2. Another component of the N-end rule pathway is At5g02310/PROTEOLYSIS6 (PRT6). PRT6 and ATE were shown to regulate seed after-ripening, seedling sugar sensitivity, seedling lipid breakdown, and abscisic acid (ABA) sensitivity of germination.; arginine-tRNA protein transferase 2 (ATE2); FUNCTIONS IN: arginyltransferase activity; INVOLVED IN: regulation of seed germination, regulation of lipid catabolic process, protein arginylation, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Arginine-tRNA-protein transferase, N-terminal (InterPro:IPR007471), Arginine-tRNA-protein transferase 1, eukaryotic (InterPro:IPR017137), Arginine-tRNA-protein transferase, C-terminal (InterPro:IPR007472); BEST Arabidopsis thaliana protein match is: arginine-tRNA protein transferase 1 (TAIR:AT5G05700.1); Has 2270 Blast hits to 2031 proteins in 783 species: Archae - 0; Bacteria - 1438; Metazoa - 213; Fungi - 241; Plants - 48; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink). & (reliability: 394.0) & (original description: no original description) 0.8974159295883822 18 evm.model.tig00000670.23 (at1g17370 : 117.0) oligouridylate binding protein 1B (UBP1B); FUNCTIONS IN: mRNA 3'-UTR binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G14100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 234.0) & (original description: no original description) 0.893327659226878 32 evm.model.tig00001292.19 no hits & (original description: no original description) 0.8931075667702442 90 evm.model.tig00000553.21 no hits & (original description: no original description) 0.8922654341769307 21 evm.model.tig00021127.75 (at2g35920 : 181.0) RNA helicase family protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G04895.1); Has 15667 Blast hits to 10761 proteins in 1709 species: Archae - 0; Bacteria - 5024; Metazoa - 4470; Fungi - 1848; Plants - 1329; Viruses - 777; Other Eukaryotes - 2219 (source: NCBI BLink). & (reliability: 338.0) & (original description: no original description) 0.8921563669805921 37 evm.model.tig00000981.12 no hits & (original description: no original description) 0.8916339932953492 32 evm.model.tig00001374.13 (at5g14250 : 95.1) Encodes subunit 3 of the COP9 signalosome.; CONSTITUTIVE PHOTOMORPHOGENIC 13 (COP13); CONTAINS InterPro DOMAIN/s: Proteasome component (PCI) domain (InterPro:IPR000717); Has 402 Blast hits to 401 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 218; Fungi - 81; Plants - 54; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). & (reliability: 190.2) & (original description: no original description) 0.8912478044501553 28 evm.model.tig00020537.18 no hits & (original description: no original description) 0.8912233181632051 38 evm.model.tig00001234.4 no hits & (original description: no original description) 0.8905201211469573 26 evm.model.tig00001154.35 no hits & (original description: no original description) 0.8904032906987901 28 evm.model.tig00001073.10 no hits & (original description: no original description) 0.8892605431768897 67 evm.model.tig00021464.9 no hits & (original description: no original description) 0.8871890173535671 74 evm.model.tig00000989.32 no hits & (original description: no original description) 0.8843878899567456 46 evm.model.tig00000692.57 no hits & (original description: no original description) 0.8840926650892691 32 evm.model.tig00000157.79 no hits & (original description: no original description) 0.8822439481252924 49 evm.model.tig00020675.7 no hits & (original description: no original description) 0.8811434364625131 35 evm.model.tig00000367.52 no hits & (original description: no original description) 0.8795573041185978 36 evm.model.tig00021012.37 (at5g42920 : 140.0) Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.; THO5; CONTAINS InterPro DOMAIN/s: THO complex, subunit 5 (InterPro:IPR019163); BEST Arabidopsis thaliana protein match is: THO complex, subunit 5 (TAIR:AT1G45233.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 280.0) & (original description: no original description) 0.8790567103566 37 evm.model.tig00001486.1 (at1g12470 : 89.0) zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pep3/Vps18/deep orange (InterPro:IPR007810), Zinc finger, RING-type (InterPro:IPR001841); Has 495 Blast hits to 471 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 170; Fungi - 162; Plants - 42; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink). & (reliability: 178.0) & (original description: no original description) 0.8764282575510636 76 evm.model.tig00000655.25 no hits & (original description: no original description) 0.8761688269304633 95 evm.model.tig00000178.94 no hits & (original description: no original description) 0.874911185114279 40 evm.model.tig00000178.52 no hits & (original description: no original description) 0.874015952187957 81 evm.model.tig00001181.19 (at1g17370 : 177.0) oligouridylate binding protein 1B (UBP1B); FUNCTIONS IN: mRNA 3'-UTR binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G14100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 354.0) & (original description: no original description) 0.8733199671741184 87 evm.model.tig00000254.14 (at4g32420 : 90.1) Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT3G63400.3). & (reliability: 180.2) & (original description: no original description) 0.8729766630220329 43 evm.model.tig00000808.20 no hits & (original description: no original description) 0.8727740842453523 56 evm.model.tig00000411.68 no hits & (original description: no original description) 0.8726533271716691 76 evm.model.tig00021535.1 no hits & (original description: no original description) 0.8706994083211426 47 evm.model.tig00020510.145 no hits & (original description: no original description) 0.8679606610754327 50 evm.model.tig00021137.11 no hits & (original description: no original description) 0.8677132751076871 51 evm.model.tig00000488.9 no hits & (original description: no original description) 0.8673320325778935 89 evm.model.tig00000361.66 no hits & (original description: no original description) 0.8672318041689423 97 evm.model.tig00021319.22 no hits & (original description: no original description) 0.8669076278264289 55 evm.model.tig00000101.1 no hits & (original description: no original description) 0.8642190378035647 85 evm.model.tig00021537.10 no hits & (original description: no original description) 0.8637736373046082 84 evm.model.tig00001067.15 no hits & (original description: no original description) 0.8632328219300273 60 evm.model.tig00021178.16 (at1g69526 : 82.4) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT1G69523.1); Has 140 Blast hits to 134 proteins in 40 species: Archae - 0; Bacteria - 24; Metazoa - 57; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). & (reliability: 164.8) & (original description: no original description) 0.8624271921221038 63 evm.model.tig00000737.29 no hits & (original description: no original description) 0.8620544841651805 92 evm.model.tig00020960.42 no hits & (original description: no original description) 0.8616103567338601 67 evm.model.tig00000145.24 no hits & (original description: no original description) 0.8614135167478356 68 evm.model.tig00021276.11 (at1g73990 : 144.0) Encodes a putative protease SppA (SppA).; signal peptide peptidase (SPPA); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis, response to light intensity; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S49, protease IV (InterPro:IPR004634), Peptidase S49 (InterPro:IPR002142), Peptidase S49, SppA (InterPro:IPR004635); Has 9340 Blast hits to 7649 proteins in 1706 species: Archae - 204; Bacteria - 6183; Metazoa - 9; Fungi - 4; Plants - 52; Viruses - 43; Other Eukaryotes - 2845 (source: NCBI BLink). & (reliability: 288.0) & (original description: no original description) 0.8573413454509327 85 evm.model.tig00000042.23 no hits & (original description: no original description) 0.8571590526419797 73 evm.model.tig00000269.26 no hits & (original description: no original description) 0.8570908045941666 74 evm.model.tig00020556.6 (at3g09080 : 121.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G49660.1); Has 14743 Blast hits to 9426 proteins in 454 species: Archae - 42; Bacteria - 3876; Metazoa - 4498; Fungi - 2945; Plants - 1499; Viruses - 0; Other Eukaryotes - 1883 (source: NCBI BLink). & (reliability: 242.0) & (original description: no original description) 0.855647349272264 80 evm.model.tig00001694.4 no hits & (original description: no original description) 0.8543491456490026 81 evm.model.tig00000114.33 no hits & (original description: no original description) 0.8540887174865079 82 evm.model.tig00020510.47 no hits & (original description: no original description) 0.8540087340961704 83 evm.model.tig00000630.44 (at1g48760 : 318.0) delta-adaptin (delta-ADR); FUNCTIONS IN: protein transporter activity, clathrin binding, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, protein transport; LOCATED IN: membrane coat, Golgi apparatus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024), Adaptor protein complex AP-3, delta subunit (InterPro:IPR017105), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Adaptor protein complex AP-1, gamma subunit (TAIR:AT1G60070.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 636.0) & (original description: no original description) 0.8537366504754983 87 evm.model.tig00000711.16 no hits & (original description: no original description) 0.8535049359127465 89 evm.model.tig00021036.23 no hits & (original description: no original description) 0.851361617185218 93 evm.model.tig00020510.144 (at5g23110 : 99.0) Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: Transmembrane Fragile-X-F-associated protein (TAIR:AT1G73950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 198.0) & (original description: no original description) 0.8507382782371867 94 evm.model.tig00000863.38 no hits & (original description: no original description) 0.849619614487442 96 evm.model.tig00000769.3 no hits & (original description: no original description) 0.8495520359172061 97