Sequence Description Alias PCC hrr evm.model.tig00000204.87 (at1g72200 : 83.6) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G22500.1); Has 9343 Blast hits to 9316 proteins in 282 species: Archae - 0; Bacteria - 4; Metazoa - 2295; Fungi - 806; Plants - 4899; Viruses - 51; Other Eukaryotes - 1288 (source: NCBI BLink). & (reliability: 167.2) & (original description: no original description) 0.9331699166181195 3 evm.model.tig00021571.4 no hits & (original description: no original description) 0.9197526575392716 10 evm.model.tig00000194.99 no hits & (original description: no original description) 0.9152844273131178 22 evm.model.tig00000900.13 no hits & (original description: no original description) 0.9132109977992836 27 evm.model.tig00021612.19 no hits & (original description: no original description) 0.9121661413524571 29 evm.model.tig00000383.49 (at4g08500 : 80.5) Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K). This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, MAPKKK8), At4g08480 (MEKK2, also known as MAP3Kb4, MAPKKK9), At4g08470 (MEKK3, also known as MAP3Kb3, MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19). Nomenclatures for mitogen-activated protein kinases are described in Trends in Plant Science 2002, 7(7):301. Mediates cold, salt, cadmium and wounding stress signalling. Phosphorylates MEK1.; MAPK/ERK kinase kinase 1 (MEKK1); FUNCTIONS IN: protein binding, kinase binding, DNA binding, MAP kinase kinase kinase activity, kinase activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 9 (TAIR:AT4G08480.1); Has 132336 Blast hits to 130259 proteins in 4567 species: Archae - 142; Bacteria - 14700; Metazoa - 49430; Fungi - 12971; Plants - 32949; Viruses - 685; Other Eukaryotes - 21459 (source: NCBI BLink). & (reliability: 161.0) & (original description: no original description) 0.9118937026858378 11 evm.model.tig00001154.1 no hits & (original description: no original description) 0.9047895791009706 14 evm.model.tig00020684.13 no hits & (original description: no original description) 0.9009683976360278 27 evm.model.tig00000113.93 no hits & (original description: no original description) 0.9006546858785374 9 evm.model.tig00021221.12 no hits & (original description: no original description) 0.8995343806186282 12 evm.model.tig00000663.61 no hits & (original description: no original description) 0.8967857008300301 40 evm.model.tig00020604.23 no hits & (original description: no original description) 0.8961025912627762 29 evm.model.tig00000042.160 (at2g48060 : 83.2) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: shoot, sperm cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341 proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa - 318; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). & (reliability: 166.4) & (original description: no original description) 0.8938255400669313 36 evm.model.tig00021070.6 no hits & (original description: no original description) 0.8935090714038003 66 evm.model.tig00020556.87 no hits & (original description: no original description) 0.8932584858314035 28 evm.model.tig00021468.5 no hits & (original description: no original description) 0.8910226812587918 35 evm.model.tig00020965.15 no hits & (original description: no original description) 0.8885659220145492 17 evm.model.tig00000194.25 (at3g12810 : 432.0) Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6).; PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (PIE1); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: SWI/SNF complex, cell wall, chromatin remodeling complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: HSA (InterPro:IPR006562), HAS subgroup (InterPro:IPR013999), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), SNF2-related (InterPro:IPR000330), MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: INO80 ortholog (TAIR:AT3G57300.1); Has 42311 Blast hits to 26312 proteins in 2357 species: Archae - 246; Bacteria - 10217; Metazoa - 11172; Fungi - 7336; Plants - 2916; Viruses - 500; Other Eukaryotes - 9924 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 149.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 864.0) & (original description: no original description) 0.8855467145880797 68 evm.model.tig00000361.56 no hits & (original description: no original description) 0.8851531832315723 48 evm.model.tig00000870.7 no hits & (original description: no original description) 0.885069147947006 20 evm.model.tig00000448.7 no hits & (original description: no original description) 0.8839293285628071 57 evm.model.tig00000881.25 no hits & (original description: no original description) 0.8830094354739243 23 evm.model.tig00021760.3 (at1g08600 : 223.0) ATRX; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: homolog of RAD54 (TAIR:AT3G19210.1). & (reliability: 446.0) & (original description: no original description) 0.881457768892894 28 evm.model.tig00000219.58 no hits & (original description: no original description) 0.8810984992896282 27 evm.model.tig00020944.19 no hits & (original description: no original description) 0.8802911930558475 29 evm.model.tig00020930.8 no hits & (original description: no original description) 0.8791767863963298 30 evm.model.tig00020952.32 no hits & (original description: no original description) 0.8785798168431272 32 evm.model.tig00000523.25 no hits & (original description: no original description) 0.8778375538892648 65 evm.model.tig00000842.21 no hits & (original description: no original description) 0.8775835343835486 43 evm.model.tig00001130.28 no hits & (original description: no original description) 0.8770876935082257 46 evm.model.tig00000180.26 no hits & (original description: no original description) 0.8760126992142884 67 evm.model.tig00020934.19 no hits & (original description: no original description) 0.8740297893791396 40 evm.model.tig00000984.21 no hits & (original description: no original description) 0.8736548212579184 40 evm.model.tig00021489.3 (at3g21090 : 172.0) ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to karrikin; LOCATED IN: membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT1G51500.1); Has 380370 Blast hits to 349027 proteins in 4089 species: Archae - 6846; Bacteria - 303738; Metazoa - 8409; Fungi - 6671; Plants - 5430; Viruses - 12; Other Eukaryotes - 49264 (source: NCBI BLink). & (q7fmw4|pdr15_orysa : 151.0) Pleiotropic drug resistance protein 15 - Oryza sativa (Rice) & (reliability: 344.0) & (original description: no original description) 0.8729084733884862 42 evm.model.tig00001299.4 no hits & (original description: no original description) 0.8726985517191084 65 evm.model.tig00020849.17 no hits & (original description: no original description) 0.8726252268638757 44 evm.model.tig00021428.17 no hits & (original description: no original description) 0.8723262158728361 86 evm.model.tig00000670.2 no hits & (original description: no original description) 0.872101606111917 72 evm.model.tig00021133.6 no hits & (original description: no original description) 0.8720370333274323 85 evm.model.tig00020849.21 no hits & (original description: no original description) 0.8720090798067057 48 evm.model.tig00020693.17 no hits & (original description: no original description) 0.8708817121054593 88 evm.model.tig00020878.26 (at5g56510 : 284.0) Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.; pumilio 12 (PUM12); FUNCTIONS IN: RNA binding, binding; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 7 (TAIR:AT1G78160.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 568.0) & (original description: no original description) 0.8703606565907138 50 evm.model.tig00001545.4 no hits & (original description: no original description) 0.8697738580924321 51 evm.model.tig00000849.30 no hits & (original description: no original description) 0.8695195466318247 95 evm.model.tig00001574.10 no hits & (original description: no original description) 0.869508039870028 54 evm.model.tig00000553.32 no hits & (original description: no original description) 0.8692113255717118 55 evm.model.tig00000227.55 no hits & (original description: no original description) 0.8682154294483609 56 evm.model.tig00000241.14 no hits & (original description: no original description) 0.8675817147851314 58 evm.model.tig00021168.23 no hits & (original description: no original description) 0.8673886819328498 95 evm.model.tig00021434.22 no hits & (original description: no original description) 0.8665129422436546 76 evm.model.tig00001029.38 no hits & (original description: no original description) 0.8662449054048178 61 evm.model.tig00000157.108 (at1g66340 : 109.0) Similar to prokaryote sensory transduction proteins. Contains a histidine kinase and a response regulator domain. Homodimer. Membrane component. Binds ethylene. Mutations affect ethylene binding and metabolism of other plant hormones such as auxin, cytokinins, ABA and gibberellic acid. Ethylene receptor. Has histidine kinase activity. Is regulated by RTE1.; ETHYLENE RESPONSE 1 (ETR1); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction histidine kinase, hybrid-type, ethylene sensor (InterPro:IPR014525), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), GAF (InterPro:IPR003018), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: ethylene response sensor 1 (TAIR:AT2G40940.1); Has 102721 Blast hits to 98263 proteins in 3046 species: Archae - 757; Bacteria - 90102; Metazoa - 18; Fungi - 1611; Plants - 2314; Viruses - 21; Other Eukaryotes - 7898 (source: NCBI BLink). & (o48929|etr1_tobac : 91.7) Ethylene receptor (EC 2.7.13.3) (NT-ETR1) - Nicotiana tabacum (Common tobacco) & (reliability: 199.6) & (original description: no original description) 0.8653474972294083 63 evm.model.tig00020554.96 no hits & (original description: no original description) 0.8650704473648075 97 evm.model.tig00020684.2 no hits & (original description: no original description) 0.8650107676978638 66 evm.model.tig00001164.19 (at5g51660 : 90.5) cleavage and polyadenylation specificity factor 160 (CPSF160); FUNCTIONS IN: nucleic acid binding; INVOLVED IN: mRNA cleavage, mRNA polyadenylation; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cleavage/polyadenylation specificity factor, A subunit, C-terminal (InterPro:IPR004871); BEST Arabidopsis thaliana protein match is: damaged DNA binding protein 1A (TAIR:AT4G05420.2); Has 1568 Blast hits to 1022 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 654; Fungi - 429; Plants - 267; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink). & (q7xwp1|cpsf1_orysa : 87.4) Probable cleavage and polyadenylation specificity factor 160 kDa subunit (CPSF 160 kDa subunit) - Oryza sativa (Rice) & (reliability: 181.0) & (original description: no original description) 0.8627154774744962 68 evm.model.tig00001030.32 no hits & (original description: no original description) 0.862456268684038 69 evm.model.tig00001164.9 no hits & (original description: no original description) 0.8611170836799299 72 evm.model.tig00021489.31 (p26969|gcsp_pea : 979.0) Glycine dehydrogenase [decarboxylating], mitochondrial precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine cleavage system P-protein) - Pisum sativum (Garden pea) & (at4g33010 : 975.0) glycine decarboxylase P-protein 1 (GLDP1); FUNCTIONS IN: glycine dehydrogenase (decarboxylating) activity, protein binding; INVOLVED IN: glycine catabolic process, response to cadmium ion, glycine decarboxylation via glycine cleavage system; LOCATED IN: mitochondrion, apoplast, glycine cleavage complex, chloroplast; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Glycine cleavage system P-protein-like (InterPro:IPR020581), Glycine cleavage system P-protein (InterPro:IPR003437), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Glycine cleavage system P-protein, N-terminal (InterPro:IPR020580); BEST Arabidopsis thaliana protein match is: glycine decarboxylase P-protein 2 (TAIR:AT2G26080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1950.0) & (original description: no original description) 0.8604472202509829 73 evm.model.tig00000789.57 no hits & (original description: no original description) 0.8600736162845581 74 evm.model.tig00001416.6 (at2g17700 : 109.0) ACT-like protein tyrosine kinase family protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, protein kinase activity; INVOLVED IN: protein amino acid phosphorylation, metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Amino acid-binding ACT (InterPro:IPR002912), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine protein kinase-like, ATMRK (InterPro:IPR015783), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ACT-like protein tyrosine kinase family protein (TAIR:AT4G35780.1); Has 131925 Blast hits to 129768 proteins in 5057 species: Archae - 139; Bacteria - 14109; Metazoa - 50800; Fungi - 11992; Plants - 33819; Viruses - 503; Other Eukaryotes - 20563 (source: NCBI BLink). & (reliability: 218.0) & (original description: no original description) 0.8595240143248567 75 evm.model.tig00020710.17 no hits & (original description: no original description) 0.859519504271206 76 evm.model.tig00020629.139 no hits & (original description: no original description) 0.8584442168049815 81 evm.model.tig00021017.5 no hits & (original description: no original description) 0.8573664488894764 83 evm.model.tig00021518.27 no hits & (original description: no original description) 0.8571055907291227 84 evm.model.tig00000057.36 (at1g77740 : 150.0) Encodes PIP5K2, a phosphatidylinositol-4-phosphate 5-kinase (PtdIns(4)P 5-kinase 2; or PIP5K2).; phosphatidylinositol-4-phosphate 5-kinase 2 (PIP5K2); CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: phosphatidylinositol-4-phosphate 5-kinase 1 (TAIR:AT1G21980.1); Has 28568 Blast hits to 7904 proteins in 613 species: Archae - 0; Bacteria - 4095; Metazoa - 4135; Fungi - 445; Plants - 2701; Viruses - 0; Other Eukaryotes - 17192 (source: NCBI BLink). & (q6ex42|pi5k1_orysa : 125.0) Phosphatidylinositol-4-phosphate 5-kinase 1 precursor (EC 2.7.1.68) (1-phosphatidylinositol-4-phosphate kinase) (PIP5K) (PtdIns(4)P-5-kinase) (Diphosphoinositide kinase) - Oryza sativa (Rice) & (reliability: 300.0) & (original description: no original description) 0.8568164654374084 87 evm.model.tig00000498.15 no hits & (original description: no original description) 0.8566494272595321 95 evm.model.tig00000073.17 no hits & (original description: no original description) 0.8552340592955529 92 evm.model.tig00000178.16 no hits & (original description: no original description) 0.8527472477419927 99