Sequence Description Alias PCC hrr evm.model.tig00021014.10 (at5g22750 : 175.0) DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer; RAD5; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: embryo, sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT5G43530.1); Has 27107 Blast hits to 18179 proteins in 1771 species: Archae - 108; Bacteria - 7266; Metazoa - 8140; Fungi - 5089; Plants - 2446; Viruses - 173; Other Eukaryotes - 3885 (source: NCBI BLink). & (reliability: 350.0) & (original description: no original description) 0.8947248836723201 4 evm.model.tig00000488.9 no hits & (original description: no original description) 0.8843304416995037 40 evm.model.tig00001215.1 no hits & (original description: no original description) 0.8734942871093121 9 evm.model.tig00000042.92 no hits & (original description: no original description) 0.8732488580255988 25 evm.model.tig00000317.26 (at5g39500 : 332.0) Encodes GNOM-LIKE1/ERMO1, a member of ARF-GEF family. Required for endoplasmic reticulum (ER) morphology.; GNOM-like 1 (GNL1); FUNCTIONS IN: ARF guanyl-nucleotide exchange factor activity; INVOLVED IN: ER body organization; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904); BEST Arabidopsis thaliana protein match is: sec7 domain-containing protein (TAIR:AT1G13980.2); Has 2885 Blast hits to 2457 proteins in 243 species: Archae - 0; Bacteria - 32; Metazoa - 1491; Fungi - 682; Plants - 262; Viruses - 0; Other Eukaryotes - 418 (source: NCBI BLink). & (reliability: 664.0) & (original description: no original description) 0.872757312423859 14 evm.model.tig00000405.52 no hits & (original description: no original description) 0.8711711836764772 6 evm.model.tig00021462.22 no hits & (original description: no original description) 0.8698977294154133 29 evm.model.tig00021294.11 no hits & (original description: no original description) 0.8641103928943601 22 evm.model.tig00021127.54 no hits & (original description: no original description) 0.8618642315021523 23 evm.model.tig00020572.38 no hits & (original description: no original description) 0.8611016147424528 20 evm.model.tig00021537.67 no hits & (original description: no original description) 0.856755134807328 70 evm.model.tig00020510.144 (at5g23110 : 99.0) Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), ATPase-like, ATP-binding domain (InterPro:IPR003594); BEST Arabidopsis thaliana protein match is: Transmembrane Fragile-X-F-associated protein (TAIR:AT1G73950.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 198.0) & (original description: no original description) 0.8566967097566015 24 evm.model.tig00021122.16 no hits & (original description: no original description) 0.853832438416713 21 evm.model.tig00000655.62 no hits & (original description: no original description) 0.8533789879822004 14 evm.model.tig00021135.11 no hits & (original description: no original description) 0.8517460108304016 16 evm.model.tig00000128.18 no hits & (original description: no original description) 0.8514472841178726 52 evm.model.tig00000396.26 no hits & (original description: no original description) 0.8512495353222866 22 evm.model.tig00000545.14 no hits & (original description: no original description) 0.8487146586829952 55 evm.model.tig00000455.10 no hits & (original description: no original description) 0.8479382992866502 67 evm.model.tig00020849.12 no hits & (original description: no original description) 0.8437818049614382 23 evm.model.tig00000663.22 no hits & (original description: no original description) 0.8429078064741695 46 evm.model.tig00000402.77 (at5g35750 : 83.6) Encodes histidine kinase AHK2.; histidine kinase 2 (HK2); FUNCTIONS IN: osmosensor activity, cytokinin receptor activity, protein histidine kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CHASE (InterPro:IPR006189), Signal transduction histidine kinase, core (InterPro:IPR005467), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: histidine kinase 3 (TAIR:AT1G27320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 167.2) & (original description: no original description) 0.8422545212382648 24 evm.model.tig00001206.1 (original description: no original description) 0.8350266734025394 53 evm.model.tig00021582.29 no hits & (original description: no original description) 0.8338951631517866 43 evm.model.tig00000158.13 (at4g18130 : 197.0) member of Histidine Kinase; phytochrome E (PHYE); FUNCTIONS IN: protein histidine kinase activity, G-protein coupled photoreceptor activity, signal transducer activity; INVOLVED IN: in 8 processes; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome B (TAIR:AT2G18790.1); Has 25391 Blast hits to 25044 proteins in 3724 species: Archae - 289; Bacteria - 19481; Metazoa - 8; Fungi - 476; Plants - 4006; Viruses - 9; Other Eukaryotes - 1122 (source: NCBI BLink). & (p36505|phy1_phypa : 194.0) Phytochrome 1 - Physcomitrella patens (Moss) & (reliability: 394.0) & (original description: no original description) 0.8327401606249225 63 evm.model.tig00000237.41 (at3g45830 : 145.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02290.1); Has 499 Blast hits to 438 proteins in 100 species: Archae - 0; Bacteria - 7; Metazoa - 236; Fungi - 15; Plants - 108; Viruses - 2; Other Eukaryotes - 131 (source: NCBI BLink). & (reliability: 290.0) & (original description: no original description) 0.8322492393365986 75 evm.model.tig00020904.131 (at1g71360 : 134.0) Galactose-binding protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Sad1/UNC-like, C-terminal (InterPro:IPR012919), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Galactose-binding protein (TAIR:AT1G22882.1); Has 1743 Blast hits to 1314 proteins in 210 species: Archae - 22; Bacteria - 165; Metazoa - 539; Fungi - 114; Plants - 96; Viruses - 20; Other Eukaryotes - 787 (source: NCBI BLink). & (reliability: 268.0) & (original description: no original description) 0.8321669800642779 54 evm.model.tig00000241.87 no hits & (original description: no original description) 0.8290166662694756 67 evm.model.tig00000057.115 no hits & (original description: no original description) 0.8279589159149969 34 evm.model.tig00021348.41 no hits & (original description: no original description) 0.8252429778754716 38 evm.model.tig00000955.34 no hits & (original description: no original description) 0.8239928370931346 40 evm.model.tig00020961.46 (at5g03730 : 143.0) Homologous to the RAF family of serine/threonine protein kinases. Negative regulator in the ethylene signal transduction pathway. Interacts with the putative ethylene receptors ETR1 and ERS. Constitutively expressed.; CONSTITUTIVE TRIPLE RESPONSE 1 (CTR1); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT4G24480.1); Has 126606 Blast hits to 124675 proteins in 4966 species: Archae - 112; Bacteria - 13843; Metazoa - 48138; Fungi - 11278; Plants - 33351; Viruses - 509; Other Eukaryotes - 19375 (source: NCBI BLink). & (reliability: 286.0) & (original description: no original description) 0.8195644685885793 73 evm.model.tig00021590.14 no hits & (original description: no original description) 0.8190196740234248 45 evm.model.tig00001339.17 no hits & (original description: no original description) 0.8172061288887852 57 evm.model.tig00000851.15 (at2g45330 : 137.0) embryo defective 1067 (emb1067); FUNCTIONS IN: tRNA 2'-phosphotransferase activity, transferase activity, transferring phosphorus-containing groups; INVOLVED IN: tRNA splicing, via endonucleolytic cleavage and ligation, embryo development ending in seed dormancy; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Phosphotransferase KptA/Tpt1 (InterPro:IPR002745); BEST Arabidopsis thaliana protein match is: RNA 2'-phosphotransferase, Tpt1 / KptA family (TAIR:AT5G23600.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 274.0) & (original description: no original description) 0.8164326793261963 49 evm.model.tig00020563.91 no hits & (original description: no original description) 0.8156854422982133 97 evm.model.tig00000076.134 no hits & (original description: no original description) 0.8129807434813721 91 evm.model.tig00020723.90 no hits & (original description: no original description) 0.8125704996400772 83 evm.model.tig00020562.9 no hits & (original description: no original description) 0.8110425519399324 78 evm.model.tig00000692.63 no hits & (original description: no original description) 0.808009504052458 67 evm.model.tig00000241.42 no hits & (original description: no original description) 0.8077508200583075 84 evm.model.tig00020554.137 no hits & (original description: no original description) 0.8037898067813838 85 evm.model.tig00000718.17 no hits & (original description: no original description) 0.8029835703467725 92 evm.model.tig00000158.21 no hits & (original description: no original description) 0.7953774753915707 84 evm.model.tig00000944.14 no hits & (original description: no original description) 0.7898105742647848 97 evm.model.tig00000147.25 (at3g01090 : 336.0) encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It can also interact with PRL1 DWD-containing protein. Based on in vitro degradation assays and cul4cs and prl1 mutants, there is evidence that AKIN10 is degraded in a proteasome-dependent manner, and that this depends on a CUL4-PRL1 E3 ligase; SNF1 kinase homolog 10 (KIN10); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, protein kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: nuclear ubiquitin ligase complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Kinase-associated KA1 (InterPro:IPR001772), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), Protein kinase, Snf1-like AMPK (InterPro:IPR015741), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: SNF1 kinase homolog 11 (TAIR:AT3G29160.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (q02723|rkin1_secce : 286.0) Carbon catabolite derepressing protein kinase (EC 2.7.11.1) - Secale cereale (Rye) & (reliability: 620.0) & (original description: no original description) 0.7894771512882666 99