Sequence Description Alias PCC hrr evm.model.tig00020675.59 no hits & (original description: no original description) 0.8978201127016161 2 evm.model.tig00020553.29 no hits & (original description: no original description) 0.863199077602368 3 evm.model.tig00000949.17 (at5g41360 : 573.0) Encodes XPB2, a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies.; homolog of Xeroderma pigmentosum complementation group B 2 (XPB2); FUNCTIONS IN: in 7 functions; INVOLVED IN: response to UV-B, N-terminal protein myristoylation; EXPRESSED IN: whole plant; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001), Xeroderma pigmentosum group B protein (XP-B) (InterPro:IPR001161), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: homolog of xeroderma pigmentosum complementation group B 1 (TAIR:AT5G41370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1146.0) & (original description: no original description) 0.8614122785328946 3 evm.model.tig00000949.18 no hits & (original description: no original description) 0.838943258434005 23 evm.model.tig00021374.5 no hits & (original description: no original description) 0.8244752882393965 5 evm.model.tig00020964.20 no hits & (original description: no original description) 0.8053287737441704 6 evm.model.tig00000254.115 (at4g01400 : 358.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 40053 Blast hits to 12380 proteins in 263 species: Archae - 4; Bacteria - 27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses - 0; Other Eukaryotes - 935 (source: NCBI BLink). & (reliability: 716.0) & (original description: no original description) 0.7923407091334642 7 evm.model.tig00000254.95 (q9ld46|crd1_chlre : 392.0) Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 1, chloroplast precursor (EC 1.14.13.81) (Mg-protoporphyrin IX monomethyl ester oxidative cyclase 1) (Copper response defect 1 protein) (Copper-response target 1 protein) & (at3g56940 : 375.0) Encodes a putative ZIP protein with varying mRNA accumulation in leaves, stems and roots. Has a consensus carboxylate-bridged di-iron binding site.; COPPER RESPONSE DEFECT 1 (CRD1); FUNCTIONS IN: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity, DNA binding; INVOLVED IN: chlorophyll biosynthetic process, oxidation reduction, photosynthesis; LOCATED IN: chloroplast thylakoid membrane, chloroplast inner membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase (InterPro:IPR008434), Ferritin/ribonucleotide reductase-like (InterPro:IPR009078), Rubrerythrin (InterPro:IPR003251). & (reliability: 750.0) & (original description: no original description) 0.7811653117639673 15 evm.model.tig00021312.56 no hits & (original description: no original description) 0.776367704651454 9 evm.model.tig00021072.15 no hits & (original description: no original description) 0.7761952293428347 29 evm.model.tig00001373.12 no hits & (original description: no original description) 0.771862990369953 19 evm.model.tig00020515.13 no hits & (original description: no original description) 0.7703732018426317 13 evm.model.tig00020996.33 no hits & (original description: no original description) 0.7691913898492814 15 evm.model.tig00000622.11 no hits & (original description: no original description) 0.7653883719322272 79 evm.model.tig00000269.96 no hits & (original description: no original description) 0.7631423573231755 65 evm.model.tig00020830.116 no hits & (original description: no original description) 0.762127302054813 84 evm.model.tig00000882.22 (at4g00840 : 157.0) DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT3G60800.1); Has 5117 Blast hits to 5115 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 2189; Fungi - 766; Plants - 830; Viruses - 0; Other Eukaryotes - 1332 (source: NCBI BLink). & (reliability: 308.0) & (original description: no original description) 0.7582154531985038 19 evm.model.tig00020685.20 no hits & (original description: no original description) 0.7561729784555571 20 evm.model.tig00020539.45 no hits & (original description: no original description) 0.7535461538742301 37 evm.model.tig00020710.31 no hits & (original description: no original description) 0.7524029074764447 22 evm.model.tig00000248.22 no hits & (original description: no original description) 0.7467307619227578 28 evm.model.tig00020961.72 no hits & (original description: no original description) 0.7427617783117885 28 evm.model.tig00000980.14 no hits & (original description: no original description) 0.741059807151176 91 evm.model.tig00000857.19 (at2g32070 : 324.0) Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G80780.2); Has 941 Blast hits to 931 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 149; Plants - 385; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). & (reliability: 648.0) & (original description: no original description) 0.7402281364231343 30 evm.model.tig00001027.17 no hits & (original description: no original description) 0.7398539721141137 50 evm.model.tig00020849.14 no hits & (original description: no original description) 0.7380823427772079 77 evm.model.tig00000037.28 (at3g63480 : 151.0) ATP binding microtubule motor family protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: phragmoplast-associated kinesin-related protein 1 (TAIR:AT4G14150.1); Has 10148 Blast hits to 9733 proteins in 305 species: Archae - 0; Bacteria - 0; Metazoa - 4474; Fungi - 1347; Plants - 1834; Viruses - 0; Other Eukaryotes - 2493 (source: NCBI BLink). & (p46869|fla10_chlre : 131.0) Kinesin-like protein FLA10 (Protein KHP1) - Chlamydomonas reinhardtii & (reliability: 302.0) & (original description: no original description) 0.7379138502673348 40 evm.model.tig00000133.10 no hits & (original description: no original description) 0.7374649604342044 41 evm.model.tig00000767.18 no hits & (original description: no original description) 0.736357468765498 36 evm.model.tig00000882.38 no hits & (original description: no original description) 0.7361384089794788 37 evm.model.tig00001307.8 no hits & (original description: no original description) 0.734218966887577 39 evm.model.tig00020629.8 no hits & (original description: no original description) 0.725094070031065 45 evm.model.tig00021348.78 no hits & (original description: no original description) 0.7241771996387172 61 evm.model.tig00020510.99 no hits & (original description: no original description) 0.7161447326115249 93 evm.model.tig00020807.8 no hits & (original description: no original description) 0.713063969070323 60 evm.model.tig00020537.6 (at3g04710 : 99.4) ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Tetratricopeptide-like helical (InterPro:IPR011990), Ankyrin repeat-containing domain (InterPro:IPR020683), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT3G04700.1). & (reliability: 198.8) & (original description: no original description) 0.7121472374212464 61 evm.model.tig00021590.13 (at2g44270 : 429.0) Encodes ROL5, a repressor of lrx1 mutants that develop aberrant root hairs. ROL5 is a homolog of yeast Ncs6p that affects TOR signaling. The target of rapamycin (TOR) pathway is a major regulator of cell growth in eukaryotes, and inhibition of this pathway by rapamycin reduces cell growth. ROL5 might function as a mitochondrial component of the TOR pathway that influences the plant's response to ROS (reactive oxygen species).; repressor of lrx1 (ROL5); FUNCTIONS IN: ATP binding; INVOLVED IN: response to reactive oxygen species, regulation of plant-type cell wall organization or biogenesis; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), PP-loop (InterPro:IPR011063), 2-thiocytidine tRNA biosynthesis protein, TtcA (InterPro:IPR012089); BEST Arabidopsis thaliana protein match is: 2-thiocytidine tRNA biosynthesis protein, TtcA (TAIR:AT1G76170.1). & (reliability: 858.0) & (original description: no original description) 0.7061926294758886 67 evm.model.tig00001128.1 (original description: no original description) 0.7051415354523215 70 evm.model.tig00000826.26 no hits & (original description: no original description) 0.704451036093636 71 evm.model.tig00000361.48 no hits & (original description: no original description) 0.7026763828838958 73 evm.model.tig00000093.155 no hits & (original description: no original description) 0.7009882278574806 84 evm.model.tig00001181.13 no hits & (original description: no original description) 0.69764208735412 96 evm.model.tig00020830.121 (at1g67370 : 92.0) meiotic asynaptic mutant 1 (ASY1). ASY1 protein is initially distributed as numerous foci throughout the chromatin. During early G2, the foci are juxtaposed to the nascent chromosome axes to form a continuous axis associated signal.; ASYNAPTIC 1 (ASY1); CONTAINS InterPro DOMAIN/s: SWIRM (InterPro:IPR007526), DNA-binding HORMA (InterPro:IPR003511); BEST Arabidopsis thaliana protein match is: DNA-binding HORMA family protein (TAIR:AT4G32200.1); Has 527 Blast hits to 490 proteins in 159 species: Archae - 0; Bacteria - 18; Metazoa - 158; Fungi - 114; Plants - 58; Viruses - 21; Other Eukaryotes - 158 (source: NCBI BLink). & (reliability: 184.0) & (original description: no original description) 0.6974265910676163 78 evm.model.tig00000310.14 no hits & (original description: no original description) 0.6973637473461692 100 evm.model.tig00020710.108 no hits & (original description: no original description) 0.6967844288671252 81 evm.model.tig00000632.4 no hits & (original description: no original description) 0.696546354749479 82 evm.model.tig00021435.20 no hits & (original description: no original description) 0.695044428635899 86 evm.model.tig00021489.5 no hits & (original description: no original description) 0.694403532556855 90 evm.model.tig00020943.72 (at3g59380 : 246.0) Encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1.; farnesyltransferase A (FTA); CONTAINS InterPro DOMAIN/s: Protein prenyltransferase (InterPro:IPR008940), Protein prenyltransferase, alpha subunit (InterPro:IPR002088); BEST Arabidopsis thaliana protein match is: RAB geranylgeranyl transferase alpha subunit 1 (TAIR:AT4G24490.2); Has 1351 Blast hits to 1070 proteins in 249 species: Archae - 32; Bacteria - 58; Metazoa - 584; Fungi - 296; Plants - 191; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink). & (o24304|pfta_pea : 236.0) Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit (EC 2.5.1.58) (EC 2.5.1.59) (CAAX farnesyltransferase alpha subunit) (Ras proteins prenyltransferase alpha) (FTase-alpha) (Type I protein geranyl-geranyltransferas & (reliability: 492.0) & (original description: no original description) 0.6911102434013492 93 evm.model.tig00000691.25 no hits & (original description: no original description) 0.6888762999208575 97