Sequence Description Alias PCC hrr evm.model.tig00000246.6 no hits & (original description: no original description) 0.9110156277493093 3 evm.model.tig00000246.7 no hits & (original description: no original description) 0.9060913106508548 2 evm.model.tig00001335.5 (at2g31170 : 108.0) SYCO ARATH; FUNCTIONS IN: cysteine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: cysteinyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cysteinyl-tRNA synthetase, class Ia (InterPro:IPR002308), Cysteinyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015803), Cysteinyl-tRNA synthetase, class Ia, DALR (InterPro:IPR015273), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Cysteinyl-tRNA synthetase, class Ia, C-terminal (InterPro:IPR015804); BEST Arabidopsis thaliana protein match is: Cysteinyl-tRNA synthetase, class Ia family protein (TAIR:AT5G38830.1); Has 10676 Blast hits to 10676 proteins in 2860 species: Archae - 252; Bacteria - 6117; Metazoa - 332; Fungi - 154; Plants - 139; Viruses - 3; Other Eukaryotes - 3679 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description) 0.9057947673844203 3 evm.model.tig00021521.25 no hits & (original description: no original description) 0.8961852776933076 4 evm.model.tig00000137.3 no hits & (original description: no original description) 0.8790376520659394 9 evm.model.tig00001258.1 no hits & (original description: no original description) 0.8777616585013339 14 evm.model.tig00020995.8 no hits & (original description: no original description) 0.868943381667039 12 evm.model.tig00000711.2 no hits & (original description: no original description) 0.8655809525192654 19 evm.model.tig00021582.44 (at5g35840 : 84.3) Encodes the apoprotein of phytochrome;one of a family of photoreceptors that modulate plant growth and development.; phytochrome C (PHYC); FUNCTIONS IN: protein histidine kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome A (TAIR:AT1G09570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p36505|phy1_phypa : 84.0) Phytochrome 1 - Physcomitrella patens (Moss) & (reliability: 168.6) & (original description: no original description) 0.8645112423593523 9 evm.model.tig00001177.19 no hits & (original description: no original description) 0.8642778609164142 10 evm.model.tig00020830.67 no hits & (original description: no original description) 0.863918525695398 15 evm.model.tig00020911.8 no hits & (original description: no original description) 0.8636654073379895 12 evm.model.tig00020556.8 no hits & (original description: no original description) 0.8630233657841914 26 evm.model.tig00021043.6 no hits & (original description: no original description) 0.8599151169990084 14 evm.model.tig00000711.1 no hits & (original description: no original description) 0.8580292129172737 18 evm.model.tig00000403.71 no hits & (original description: no original description) 0.8547618699371341 25 evm.model.tig00020816.123 (q9fns4|mbb1_chlre : 100.0) PsbB mRNA maturation factor Mbb1, chloroplast precursor - Chlamydomonas reinhardtii & (at3g17040 : 93.2) It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis.; high chlorophyll fluorescent 107 (HCF107); FUNCTIONS IN: binding; INVOLVED IN: plastid organization, RNA processing, regulation of translation; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: pre-mRNA splicing factor-related (TAIR:AT4G03430.1). & (reliability: 186.4) & (original description: no original description) 0.8485399583447759 17 evm.model.tig00021179.38 no hits & (original description: no original description) 0.8479418019367513 18 evm.model.tig00020996.12 no hits & (original description: no original description) 0.8470487116193022 51 evm.model.tig00000404.19 no hits & (original description: no original description) 0.8457267780086408 22 evm.model.tig00000900.19 no hits & (original description: no original description) 0.8441088203212566 77 evm.model.tig00021366.20 no hits & (original description: no original description) 0.8438032874203383 27 evm.model.tig00001284.11 no hits & (original description: no original description) 0.8436882720740287 23 evm.model.tig00001094.41 no hits & (original description: no original description) 0.8435412083214198 41 evm.model.tig00020685.35 (at2g38400 : 82.0) alanine:glyoxylate aminotransferase 2 homolog (AGT3) mRNA,; alanine:glyoxylate aminotransferase 3 (AGT3); FUNCTIONS IN: pyridoxal phosphate binding, transaminase activity, catalytic activity, alanine-glyoxylate transaminase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: PYRIMIDINE 4 (TAIR:AT3G08860.1). & (reliability: 164.0) & (original description: no original description) 0.8423397678742504 25 evm.model.tig00001017.2 no hits & (original description: no original description) 0.8412955142568821 28 evm.model.tig00000204.7 no hits & (original description: no original description) 0.839161616657715 27 evm.model.tig00000802.42 no hits & (original description: no original description) 0.8382144080174964 28 evm.model.tig00021257.24 no hits & (original description: no original description) 0.8371910480983374 29 evm.model.tig00021435.49 no hits & (original description: no original description) 0.8369095708408802 30 evm.model.tig00020723.93 no hits & (original description: no original description) 0.8346117946329769 33 evm.model.tig00000093.172 no hits & (original description: no original description) 0.8337191210561283 34 evm.model.tig00021569.5 no hits & (original description: no original description) 0.8304861901241115 35 evm.model.tig00020806.17 no hits & (original description: no original description) 0.8261194532390504 71 evm.model.tig00000190.40 (o48929|etr1_tobac : 150.0) Ethylene receptor (EC 2.7.13.3) (NT-ETR1) - Nicotiana tabacum (Common tobacco) & (at1g66340 : 147.0) Similar to prokaryote sensory transduction proteins. Contains a histidine kinase and a response regulator domain. Homodimer. Membrane component. Binds ethylene. Mutations affect ethylene binding and metabolism of other plant hormones such as auxin, cytokinins, ABA and gibberellic acid. Ethylene receptor. Has histidine kinase activity. Is regulated by RTE1.; ETHYLENE RESPONSE 1 (ETR1); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction histidine kinase, hybrid-type, ethylene sensor (InterPro:IPR014525), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), GAF (InterPro:IPR003018), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: ethylene response sensor 1 (TAIR:AT2G40940.1); Has 102721 Blast hits to 98263 proteins in 3046 species: Archae - 757; Bacteria - 90102; Metazoa - 18; Fungi - 1611; Plants - 2314; Viruses - 21; Other Eukaryotes - 7898 (source: NCBI BLink). & (reliability: 284.0) & (original description: no original description) 0.8172760572207716 99 evm.model.tig00001042.26 (at2g02710 : 165.0) Encodes a putative blue light receptor protein.; PAS/LOV PROTEIN C (PLPC); FUNCTIONS IN: two-component sensor activity, signal transducer activity; INVOLVED IN: signal transduction, regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), PAS-associated, C-terminal (InterPro:IPR000700); BEST Arabidopsis thaliana protein match is: phototropin 2 (TAIR:AT5G58140.4); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q67ux0|ado2_orysa : 83.6) Putative adagio-like protein 2 - Oryza sativa (Rice) & (reliability: 330.0) & (original description: no original description) 0.8169847627488805 39 evm.model.tig00000498.19 no hits & (original description: no original description) 0.815723054630705 41 evm.model.tig00001365.10 (at4g13250 : 83.2) Encodes a chlorophyll b reductase involved in the degradation of chlorophyll b and LHCII (light harvesting complex II).; NON-YELLOW COLORING 1 (NYC1); CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NYC1-like (TAIR:AT5G04900.1). & (reliability: 166.4) & (original description: no original description) 0.8152140336931094 42 evm.model.tig00021366.19 no hits & (original description: no original description) 0.8148521579592418 50 evm.model.tig00000624.9 no hits & (original description: no original description) 0.8135105891060621 49 evm.model.tig00001057.4 no hits & (original description: no original description) 0.8126776723323064 54 evm.model.tig00001374.17 no hits & (original description: no original description) 0.8122107888725025 79 evm.model.tig00000760.2 no hits & (original description: no original description) 0.8100474842696361 48 evm.model.tig00000053.15 (at5g61960 : 235.0) A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices.; MEI2-like protein 1 (ML1); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: MEI2-like 4 (TAIR:AT5G07290.1); Has 4583 Blast hits to 4209 proteins in 289 species: Archae - 0; Bacteria - 6; Metazoa - 2486; Fungi - 644; Plants - 914; Viruses - 0; Other Eukaryotes - 533 (source: NCBI BLink). & (q27k34|pla2_orysa : 122.0) Protein terminal ear1 homolog (Protein PLASTOCHRON2) (Protein LEAFY HEAD2) - Oryza sativa (Rice) & (reliability: 470.0) & (original description: no original description) 0.8092804769610147 49 evm.model.tig00000248.71 no hits & (original description: no original description) 0.8090850182294272 50 evm.model.tig00000157.116 (at5g10720 : 97.1) member of Histidine Kinase; histidine kinase 5 (HK5); FUNCTIONS IN: protein histidine kinase activity; INVOLVED IN: cytokinin mediated signaling pathway; LOCATED IN: vacuole; EXPRESSED IN: male gametophyte, root; CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CheY-like (InterPro:IPR011006), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), ATPase-like, ATP-binding domain (InterPro:IPR003594), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: calmodulin-binding protein-related (TAIR:AT5G10680.1); Has 142896 Blast hits to 126384 proteins in 3154 species: Archae - 1152; Bacteria - 126386; Metazoa - 257; Fungi - 2334; Plants - 2049; Viruses - 33; Other Eukaryotes - 10685 (source: NCBI BLink). & (reliability: 194.2) & (original description: no original description) 0.8076535649102905 53 evm.model.tig00000144.145 no hits & (original description: no original description) 0.8018164375322863 57 evm.model.tig00020807.9 no hits & (original description: no original description) 0.79960461324041 61 evm.model.tig00000269.9 no hits & (original description: no original description) 0.7991442595762087 62 evm.model.tig00000615.52 (at4g04180 : 104.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: mitochondrion; EXPRESSED IN: shoot apex, embryo, flower, pedicel, seed; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G45000.1); Has 31547 Blast hits to 29327 proteins in 3060 species: Archae - 1473; Bacteria - 12216; Metazoa - 4656; Fungi - 3754; Plants - 2675; Viruses - 24; Other Eukaryotes - 6749 (source: NCBI BLink). & (reliability: 208.0) & (original description: no original description) 0.7986707413693978 64 evm.model.tig00001525.3 no hits & (original description: no original description) 0.7965961990173066 67 evm.model.tig00000144.190 no hits & (original description: no original description) 0.7956721517927086 69 evm.model.tig00000405.16 (at3g07090 : 102.0) PPPDE putative thiol peptidase family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT5G25170.1); Has 872 Blast hits to 872 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 235; Fungi - 119; Plants - 332; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description) 0.794219082297335 70 evm.model.tig00000865.36 no hits & (original description: no original description) 0.7942104909153119 71 evm.model.tig00020684.46 no hits & (original description: no original description) 0.7923982211427999 77 evm.model.tig00020911.10 no hits & (original description: no original description) 0.7910128794108677 76 evm.model.tig00000601.16 no hits & (original description: no original description) 0.7886190288508145 78 evm.model.tig00000455.51 no hits & (original description: no original description) 0.788167065299933 80 evm.model.tig00001525.5 no hits & (original description: no original description) 0.7875205990775618 82 evm.model.tig00000889.7 no hits & (original description: no original description) 0.7865911683499742 91 evm.model.tig00020892.8 no hits & (original description: no original description) 0.7862530566659756 85 evm.model.tig00000836.16 no hits & (original description: no original description) 0.7854457577296292 86 evm.model.tig00000865.40 no hits & (original description: no original description) 0.7847859811289659 87 evm.model.tig00021719.3 no hits & (original description: no original description) 0.7845638610585429 88 evm.model.tig00000076.56 no hits & (original description: no original description) 0.7844535540969505 89 evm.model.tig00000553.44 (at4g00370 : 107.0) Encodes an inorganic phosphate transporter (PHT4;4).; ANTR2; FUNCTIONS IN: organic anion transmembrane transporter activity, inorganic phosphate transmembrane transporter activity; INVOLVED IN: transmembrane transport; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: phosphate transporter 4;1 (TAIR:AT2G29650.1); Has 37886 Blast hits to 37799 proteins in 2473 species: Archae - 506; Bacteria - 30466; Metazoa - 2514; Fungi - 1637; Plants - 427; Viruses - 0; Other Eukaryotes - 2336 (source: NCBI BLink). & (reliability: 214.0) & (original description: no original description) 0.7838379920855898 90 evm.model.tig00021290.4 no hits & (original description: no original description) 0.7830809224244429 92 evm.model.tig00021094.7 (q9zwi9|phyc_orysa : 156.0) Phytochrome C - Oryza sativa (Rice) & (at5g35840 : 144.0) Encodes the apoprotein of phytochrome;one of a family of photoreceptors that modulate plant growth and development.; phytochrome C (PHYC); FUNCTIONS IN: protein histidine kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome A (TAIR:AT1G09570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 288.0) & (original description: no original description) 0.7828410974579374 94 evm.model.tig00000178.37 no hits & (original description: no original description) 0.7826896848886639 95 evm.model.tig00000870.28 no hits & (original description: no original description) 0.7813804549006205 96 evm.model.tig00020629.68 (at5g47690 : 94.7) binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: cotyledon, guard cell, cultured cell; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G77600.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 189.4) & (original description: no original description) 0.78119903677862 98 evm.model.tig00021434.34 no hits & (original description: no original description) 0.7805817998276338 99 evm.model.tig00020563.159 no hits & (original description: no original description) 0.7797692763113184 100