Sequence Description Alias PCC hrr evm.model.tig00001471.8 (at3g55070 : 234.0) LisH/CRA/RING-U-box domains-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH/CRA/RING-U-box domains-containing protein (TAIR:AT4G37880.1); Has 813 Blast hits to 810 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 347; Fungi - 254; Plants - 147; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). & (reliability: 468.0) & (original description: no original description) 0.9096989012554493 1 evm.model.tig00000989.28 no hits & (original description: no original description) 0.8878634879481204 6 evm.model.tig00001376.15 no hits & (original description: no original description) 0.877862063624301 3 evm.model.tig00000480.70 no hits & (original description: no original description) 0.8722000316676964 17 evm.model.tig00000444.11 (q94hl5|t2ag_orysa : 100.0) Transcription initiation factor IIA gamma chain (TFIIA-gamma) - Oryza sativa (Rice) & (at4g24440 : 99.4) transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S); FUNCTIONS IN: RNA polymerase II transcription factor activity; INVOLVED IN: transcription initiation from RNA polymerase II promoter; LOCATED IN: transcription factor TFIIA complex; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor IIA, gamma subunit (InterPro:IPR003194), Transcription factor IIA, beta-barrel (InterPro:IPR009088), Transcription initiation factor IIA, gamma subunit, N-terminal (InterPro:IPR015872), Transcription initiation factor IIA, gamma subunit, C-terminal (InterPro:IPR015871), Transcription factor IIA, helical (InterPro:IPR009083); Has 553 Blast hits to 553 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 162; Plants - 188; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). & (reliability: 198.8) & (original description: no original description) 0.8645651933352472 47 evm.model.tig00020918.2 (at5g61150 : 95.5) Encodes highly hydrophilic protein involved in positively regulating FLC expression. Mutants are early flowering and show a loss of FLC expression in the absence of cold.; VERNALIZATION INDEPENDENCE 4 (VIP4); INVOLVED IN: negative regulation of flower development, vernalization response; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leo1-like protein (InterPro:IPR007149); Has 69096 Blast hits to 31991 proteins in 1682 species: Archae - 184; Bacteria - 8816; Metazoa - 27909; Fungi - 8257; Plants - 3470; Viruses - 882; Other Eukaryotes - 19578 (source: NCBI BLink). & (reliability: 191.0) & (original description: no original description) 0.8631509633132342 9 evm.model.tig00001376.14 no hits & (original description: no original description) 0.8609240611133758 13 evm.model.tig00000545.29 (at3g55800 : 127.0) Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate up to 50% more sucrose and starch than wild-type.; sedoheptulose-bisphosphatase (SBPASE); FUNCTIONS IN: sedoheptulose-bisphosphatase activity, phosphoric ester hydrolase activity; INVOLVED IN: in 6 processes; LOCATED IN: thylakoid, apoplast, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Fructose-1,6-bisphosphatase, active site (InterPro:IPR020548), Fructose-1,6-bisphosphatase (InterPro:IPR000146); BEST Arabidopsis thaliana protein match is: Inositol monophosphatase family protein (TAIR:AT1G43670.1); Has 3745 Blast hits to 3741 proteins in 1296 species: Archae - 47; Bacteria - 2318; Metazoa - 373; Fungi - 154; Plants - 424; Viruses - 0; Other Eukaryotes - 429 (source: NCBI BLink). & (p46285|s17p_wheat : 120.0) Sedoheptulose-1,7-bisphosphatase, chloroplast precursor (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase) (SED(1,7)P2ase) - Triticum aestivum (Wheat) & (reliability: 254.0) & (original description: no original description) 0.8583796457634082 17 evm.model.tig00000737.8 no hits & (original description: no original description) 0.8562168171113994 29 evm.model.tig00000076.3 no hits & (original description: no original description) 0.8511828925249997 36 evm.model.tig00021319.37 no hits & (original description: no original description) 0.8510872649848132 20 evm.model.tig00000944.32 (at5g67530 : 121.0) plant U-box 49 (PUB49); FUNCTIONS IN: ubiquitin-protein ligase activity, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), U box domain (InterPro:IPR003613), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT1G01940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 242.0) & (original description: no original description) 0.8508524077373343 38 evm.model.tig00000319.20 (at1g73660 : 122.0) Encodes a protein with similarity to MAPKKKs. May function as a negative regulator of salt tolerance.; protein tyrosine kinase family protein; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Ubiquitin interacting motif (InterPro:IPR003903), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G18160.1); Has 126827 Blast hits to 124278 proteins in 4857 species: Archae - 98; Bacteria - 13376; Metazoa - 48156; Fungi - 11388; Plants - 33654; Viruses - 503; Other Eukaryotes - 19652 (source: NCBI BLink). & (reliability: 244.0) & (original description: no original description) 0.849317975162866 42 evm.model.tig00021168.22 (at3g04240 : 89.7) Has O-linked N-acetyl glucosamine transferase activity. Similar to Arabidopsis SPY gene.; secret agent (SEC); CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G11540.1); Has 114710 Blast hits to 35863 proteins in 2480 species: Archae - 3197; Bacteria - 54774; Metazoa - 16661; Fungi - 4580; Plants - 3873; Viruses - 0; Other Eukaryotes - 31625 (source: NCBI BLink). & (reliability: 179.4) & (original description: no original description) 0.8473633101690703 29 evm.model.tig00000135.2 (at2g45990 : 133.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 266.0) & (original description: no original description) 0.8465827569396742 64 evm.model.tig00001424.12 (at1g02330 : 89.4) CONTAINS InterPro DOMAIN/s: Hepatocellular carcinoma-associated antigen 59 (InterPro:IPR010756); Has 1239 Blast hits to 998 proteins in 204 species: Archae - 4; Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87; Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink). & (reliability: 178.8) & (original description: no original description) 0.8464484536774849 38 evm.model.tig00000792.22 no hits & (original description: no original description) 0.8459121393542477 49 evm.model.tig00021238.22 no hits & (original description: no original description) 0.8453855878567463 30 evm.model.tig00000241.183 no hits & (original description: no original description) 0.844549522167974 19 evm.model.tig00000144.65 no hits & (original description: no original description) 0.8445099385048005 31 evm.model.tig00001484.6 (at1g02305 : 172.0) Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis, regulation of catalytic activity; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Peptidase C1A, cathepsin B (InterPro:IPR015643), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Peptidase C1A, propeptide (InterPro:IPR012599); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT1G02300.1); Has 7484 Blast hits to 7435 proteins in 695 species: Archae - 51; Bacteria - 161; Metazoa - 3268; Fungi - 4; Plants - 1732; Viruses - 146; Other Eukaryotes - 2122 (source: NCBI BLink). & (p25778|oryc_orysa : 110.0) Oryzain gamma chain precursor (EC 3.4.22.-) - Oryza sativa (Rice) & (reliability: 344.0) & (original description: no original description) 0.8423715485969901 21 evm.model.tig00000227.43 no hits & (original description: no original description) 0.840125010706552 47 evm.model.tig00021350.26 no hits & (original description: no original description) 0.8390310421124033 75 evm.model.tig00000342.35 (q9m3t9|dad1_betve : 114.0) Defender against cell death 1 (DAD-1) - Betula verrucosa (White birch) (Betula pendula) & (at1g32210 : 112.0) Encodes protein involved in suppression of apoptosis. Complements a mammalian apoptosis suppressor mutation.; DEFENDER AGAINST APOPTOTIC DEATH 1 (ATDAD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: anti-apoptosis; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Defender against death DAD protein (InterPro:IPR003038); BEST Arabidopsis thaliana protein match is: Defender against death (DAD family) protein (TAIR:AT2G35520.1); Has 458 Blast hits to 458 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 115; Plants - 102; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink). & (reliability: 224.0) & (original description: no original description) 0.837939900260848 35 evm.model.tig00000404.27 no hits & (original description: no original description) 0.8305694255139243 67 evm.model.tig00000227.6 no hits & (original description: no original description) 0.8262707696332993 93 evm.model.tig00000523.16 no hits & (original description: no original description) 0.8252947647110199 38 evm.model.tig00020685.11 no hits & (original description: no original description) 0.8252911555900266 56 evm.model.tig00000850.13 no hits & (original description: no original description) 0.8252417495875556 33 evm.model.tig00000144.6 no hits & (original description: no original description) 0.8245077532470547 34 evm.model.tig00000042.63 no hits & (original description: no original description) 0.8236372174942044 35 evm.model.tig00020875.7 no hits & (original description: no original description) 0.821071635881707 38 evm.model.tig00020918.1 (at5g37290 : 82.4) ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 164.8) & (original description: no original description) 0.8205218843387269 40 evm.model.tig00000342.25 no hits & (original description: no original description) 0.8198686941076815 45 evm.model.tig00000912.35 no hits & (original description: no original description) 0.8155664747683984 42 evm.model.tig00020703.26 no hits & (original description: no original description) 0.8087512499426068 80 evm.model.tig00021181.3 no hits & (original description: no original description) 0.8080535669707687 49 evm.model.tig00000194.38 (at4g02720 : 176.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF926 (InterPro:IPR009269); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 352.0) & (original description: no original description) 0.806616138012054 53 evm.model.tig00000865.21 no hits & (original description: no original description) 0.8062785023842228 55 evm.model.tig00000865.35 no hits & (original description: no original description) 0.8006701323924478 57 evm.model.tig00021123.32 (at5g46420 : 101.0) 16S rRNA processing protein RimM family; FUNCTIONS IN: ribosome binding, nucleotidyltransferase activity; INVOLVED IN: metabolic process, rRNA processing, ribosome biogenesis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PRC-barrel (InterPro:IPR007903), UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618), RimM protein (InterPro:IPR002676), 16S rRNA processing protein RimM (InterPro:IPR011961); BEST Arabidopsis thaliana protein match is: N-acetylglucosamine-1-phosphate uridylyltransferase 1 (TAIR:AT1G31070.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 202.0) & (original description: no original description) 0.800258450440805 61 evm.model.tig00000350.12 no hits & (original description: no original description) 0.7992943557934336 59 evm.model.tig00000444.10 no hits & (original description: no original description) 0.7984925192991643 86 evm.model.tig00021434.14 no hits & (original description: no original description) 0.7976003324759793 63 evm.model.tig00021108.41 (at1g62040 : 160.0) autophagy 8c (ATG8C); FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT4G21980.2). & (reliability: 320.0) & (original description: no original description) 0.7953991651636096 67 evm.model.tig00001181.34 no hits & (original description: no original description) 0.7916351964859643 71 evm.model.tig00000711.34 no hits & (original description: no original description) 0.7900790175249005 72 evm.model.tig00000970.27 no hits & (original description: no original description) 0.7861113871806769 76 evm.model.tig00000448.27 no hits & (original description: no original description) 0.7838572702425582 77 evm.model.tig00001264.16 (at5g58020 : 125.0) unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF602 (InterPro:IPR006735); Has 385 Blast hits to 385 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 117; Plants - 50; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). & (reliability: 250.0) & (original description: no original description) 0.7807685531730031 80 evm.model.tig00020685.27 no hits & (original description: no original description) 0.7747500468647996 88