Sequence Description Alias PCC hrr evm.model.tig00000246.6 no hits & (original description: no original description) 0.9317814169378676 1 evm.model.tig00020921.1 no hits & (original description: no original description) 0.9060913106508548 2 evm.model.tig00021521.25 no hits & (original description: no original description) 0.8924747590097568 3 evm.model.tig00000137.3 no hits & (original description: no original description) 0.8826480304332349 7 evm.model.tig00000310.44 no hits & (original description: no original description) 0.8782633098166108 5 evm.model.tig00000178.37 no hits & (original description: no original description) 0.8771460728550061 6 evm.model.tig00000404.19 no hits & (original description: no original description) 0.8682929161074514 10 evm.model.tig00020556.8 no hits & (original description: no original description) 0.865586449799731 24 evm.model.tig00000402.30 no hits & (original description: no original description) 0.8647694452920945 11 evm.model.tig00001284.11 no hits & (original description: no original description) 0.8579014247862509 10 evm.model.tig00001471.6 no hits & (original description: no original description) 0.8548142859037615 11 evm.model.tig00001258.1 no hits & (original description: no original description) 0.8533304881310955 35 evm.model.tig00001374.17 no hits & (original description: no original description) 0.8523823766576397 22 evm.model.tig00000053.15 (at5g61960 : 235.0) A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices.; MEI2-like protein 1 (ML1); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: MEI2-like 4 (TAIR:AT5G07290.1); Has 4583 Blast hits to 4209 proteins in 289 species: Archae - 0; Bacteria - 6; Metazoa - 2486; Fungi - 644; Plants - 914; Viruses - 0; Other Eukaryotes - 533 (source: NCBI BLink). & (q27k34|pla2_orysa : 122.0) Protein terminal ear1 homolog (Protein PLASTOCHRON2) (Protein LEAFY HEAD2) - Oryza sativa (Rice) & (reliability: 470.0) & (original description: no original description) 0.8522442332212083 15 evm.model.tig00000630.45 (at4g16180 : 90.5) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G28720.1); Has 5 Blast hits to 5 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). & (reliability: 181.0) & (original description: no original description) 0.8518145491378722 16 evm.model.tig00000711.1 no hits & (original description: no original description) 0.8512190620158157 22 evm.model.tig00000403.71 no hits & (original description: no original description) 0.849582415938663 29 evm.model.tig00021326.43 (at1g54350 : 208.0) ABC transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter, N-terminal (InterPro:IPR010509), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: peroxisomal ABC transporter 1 (TAIR:AT4G39850.3); Has 196809 Blast hits to 191927 proteins in 3574 species: Archae - 3050; Bacteria - 158969; Metazoa - 4367; Fungi - 3288; Plants - 2549; Viruses - 3; Other Eukaryotes - 24583 (source: NCBI BLink). & (reliability: 416.0) & (original description: no original description) 0.8409086536887606 19 evm.model.tig00001335.5 (at2g31170 : 108.0) SYCO ARATH; FUNCTIONS IN: cysteine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: cysteinyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Cysteinyl-tRNA synthetase, class Ia (InterPro:IPR002308), Cysteinyl-tRNA synthetase, class Ia, N-terminal (InterPro:IPR015803), Cysteinyl-tRNA synthetase, class Ia, DALR (InterPro:IPR015273), Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (InterPro:IPR009080), Cysteinyl-tRNA synthetase, class Ia, C-terminal (InterPro:IPR015804); BEST Arabidopsis thaliana protein match is: Cysteinyl-tRNA synthetase, class Ia family protein (TAIR:AT5G38830.1); Has 10676 Blast hits to 10676 proteins in 2860 species: Archae - 252; Bacteria - 6117; Metazoa - 332; Fungi - 154; Plants - 139; Viruses - 3; Other Eukaryotes - 3679 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description) 0.839736405597778 39 evm.model.tig00021569.5 no hits & (original description: no original description) 0.8379033661736894 21 evm.model.tig00021073.19 no hits & (original description: no original description) 0.8364931463624067 29 evm.model.tig00000989.43 (at5g42620 : 162.0) metalloendopeptidases;zinc ion binding; FUNCTIONS IN: metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, cell adhesion; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EGF, extracellular (InterPro:IPR013111), EGF-like, type 3 (InterPro:IPR000742), EGF-like region, conserved site (InterPro:IPR013032), Peptidase M8, leishmanolysin (InterPro:IPR001577). & (reliability: 324.0) & (original description: no original description) 0.8338429100276878 24 evm.model.tig00020685.35 (at2g38400 : 82.0) alanine:glyoxylate aminotransferase 2 homolog (AGT3) mRNA,; alanine:glyoxylate aminotransferase 3 (AGT3); FUNCTIONS IN: pyridoxal phosphate binding, transaminase activity, catalytic activity, alanine-glyoxylate transaminase activity; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: PYRIMIDINE 4 (TAIR:AT3G08860.1). & (reliability: 164.0) & (original description: no original description) 0.8330918219937605 28 evm.model.tig00001525.3 no hits & (original description: no original description) 0.8326781863459157 26 evm.model.tig00021569.4 (original description: no original description) 0.8269063670338068 27 evm.model.tig00020996.12 no hits & (original description: no original description) 0.8247913201159732 87 evm.model.tig00021098.39 no hits & (original description: no original description) 0.824098501940694 29 evm.model.tig00020830.67 no hits & (original description: no original description) 0.8221125192792704 46 evm.model.tig00000190.40 (o48929|etr1_tobac : 150.0) Ethylene receptor (EC 2.7.13.3) (NT-ETR1) - Nicotiana tabacum (Common tobacco) & (at1g66340 : 147.0) Similar to prokaryote sensory transduction proteins. Contains a histidine kinase and a response regulator domain. Homodimer. Membrane component. Binds ethylene. Mutations affect ethylene binding and metabolism of other plant hormones such as auxin, cytokinins, ABA and gibberellic acid. Ethylene receptor. Has histidine kinase activity. Is regulated by RTE1.; ETHYLENE RESPONSE 1 (ETR1); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction histidine kinase, hybrid-type, ethylene sensor (InterPro:IPR014525), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), GAF (InterPro:IPR003018), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: ethylene response sensor 1 (TAIR:AT2G40940.1); Has 102721 Blast hits to 98263 proteins in 3046 species: Archae - 757; Bacteria - 90102; Metazoa - 18; Fungi - 1611; Plants - 2314; Viruses - 21; Other Eukaryotes - 7898 (source: NCBI BLink). & (reliability: 284.0) & (original description: no original description) 0.8219500641572871 84 evm.model.tig00000076.56 no hits & (original description: no original description) 0.8202608553142546 32 evm.model.tig00021366.19 no hits & (original description: no original description) 0.8194822490517649 46 evm.model.tig00021043.6 no hits & (original description: no original description) 0.8174044567454744 38 evm.model.tig00000545.3 (at1g18160 : 108.0) Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine/tyrosine kinase activity, kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G11850.1); Has 123759 Blast hits to 122075 proteins in 4739 species: Archae - 100; Bacteria - 12949; Metazoa - 47184; Fungi - 11113; Plants - 33371; Viruses - 486; Other Eukaryotes - 18556 (source: NCBI BLink). & (reliability: 208.0) & (original description: no original description) 0.8162900949966773 35 evm.model.tig00020537.77 no hits & (original description: no original description) 0.8155451306418771 36 evm.model.tig00020911.8 no hits & (original description: no original description) 0.8147339890892428 37 evm.model.tig00000455.51 no hits & (original description: no original description) 0.8142151197003114 46 evm.model.tig00021621.17 no hits & (original description: no original description) 0.8140573855175338 39 evm.model.tig00020563.76 no hits & (original description: no original description) 0.8123347843942056 83 evm.model.tig00000760.2 no hits & (original description: no original description) 0.810958129398131 42 evm.model.tig00000093.172 no hits & (original description: no original description) 0.8091798511021542 43 evm.model.tig00000711.2 no hits & (original description: no original description) 0.8055780137870507 92 evm.model.tig00020553.290 no hits & (original description: no original description) 0.8049465988068897 63 evm.model.tig00021179.38 no hits & (original description: no original description) 0.8041664409193338 46 evm.model.tig00000691.4 (at5g44750 : 164.0) Homologous to Y-family DNA polymerases, contains BRCT domain. Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS).; REV1; FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: DNA repair, response to UV-B, response to DNA damage stimulus; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase, Y-family, little finger domain (InterPro:IPR017961), DNA-repair protein, UmuC-like (InterPro:IPR001126), DNA-repair protein, UmuC-like, N-terminal (InterPro:IPR017963), DNA repair protein, Rev1 (InterPro:IPR012112), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: DNA/RNA polymerases superfamily protein (TAIR:AT1G49980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 328.0) & (original description: no original description) 0.8035132913181834 47 evm.model.tig00020684.46 no hits & (original description: no original description) 0.8024420564193827 59 evm.model.tig00000498.19 no hits & (original description: no original description) 0.8007340996625391 49 evm.model.tig00021582.44 (at5g35840 : 84.3) Encodes the apoprotein of phytochrome;one of a family of photoreceptors that modulate plant growth and development.; phytochrome C (PHYC); FUNCTIONS IN: protein histidine kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome A (TAIR:AT1G09570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p36505|phy1_phypa : 84.0) Phytochrome 1 - Physcomitrella patens (Moss) & (reliability: 168.6) & (original description: no original description) 0.7994627247116742 50 evm.model.tig00000204.56 no hits & (original description: no original description) 0.7990685950229186 96 evm.model.tig00001365.10 (at4g13250 : 83.2) Encodes a chlorophyll b reductase involved in the degradation of chlorophyll b and LHCII (light harvesting complex II).; NON-YELLOW COLORING 1 (NYC1); CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NYC1-like (TAIR:AT5G04900.1). & (reliability: 166.4) & (original description: no original description) 0.7989967706231266 52 evm.model.tig00021290.15 no hits & (original description: no original description) 0.7963183916221477 98 evm.model.tig00020723.93 no hits & (original description: no original description) 0.7956290093175389 56 evm.model.tig00000553.44 (at4g00370 : 107.0) Encodes an inorganic phosphate transporter (PHT4;4).; ANTR2; FUNCTIONS IN: organic anion transmembrane transporter activity, inorganic phosphate transmembrane transporter activity; INVOLVED IN: transmembrane transport; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: phosphate transporter 4;1 (TAIR:AT2G29650.1); Has 37886 Blast hits to 37799 proteins in 2473 species: Archae - 506; Bacteria - 30466; Metazoa - 2514; Fungi - 1637; Plants - 427; Viruses - 0; Other Eukaryotes - 2336 (source: NCBI BLink). & (reliability: 214.0) & (original description: no original description) 0.7908288731055018 58 evm.model.tig00000248.71 no hits & (original description: no original description) 0.7902793336690308 59 evm.model.tig00021580.5 no hits & (original description: no original description) 0.7900721137371431 61 evm.model.tig00000145.38 no hits & (original description: no original description) 0.7880596438459716 62 evm.model.tig00020563.85 (at2g27460 : 244.0) sec23/sec24 transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport, ER to Golgi vesicle-mediated transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT3G07100.1); Has 1620 Blast hits to 1606 proteins in 237 species: Archae - 0; Bacteria - 2; Metazoa - 540; Fungi - 539; Plants - 300; Viruses - 0; Other Eukaryotes - 239 (source: NCBI BLink). & (reliability: 488.0) & (original description: no original description) 0.7873468968249598 63 evm.model.tig00000581.23 no hits & (original description: no original description) 0.7871764573376976 66 evm.model.tig00000241.104 no hits & (original description: no original description) 0.7833026740767862 76 evm.model.tig00021366.20 no hits & (original description: no original description) 0.7830413121673043 89 evm.model.tig00000204.7 no hits & (original description: no original description) 0.7829254154539156 71 evm.model.tig00000042.173 no hits & (original description: no original description) 0.7823000029502182 86 evm.model.tig00000670.21 (at1g12600 : 135.0) UDP-N-acetylglucosamine (UAA) transporter family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: UDP-galactose transporter 2 (TAIR:AT4G23010.1); Has 1283 Blast hits to 1283 proteins in 272 species: Archae - 2; Bacteria - 86; Metazoa - 575; Fungi - 206; Plants - 224; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink). & (reliability: 254.0) & (original description: no original description) 0.7779232596699241 82 evm.model.tig00020723.88 no hits & (original description: no original description) 0.7763481652785534 84 evm.model.tig00001177.19 no hits & (original description: no original description) 0.7759291687261946 97 evm.model.tig00021290.4 no hits & (original description: no original description) 0.7750930386702721 98 evm.model.tig00021126.27 no hits & (original description: no original description) 0.7712244100418038 91 evm.model.tig00000911.9 no hits & (original description: no original description) 0.7705470747282084 92 evm.model.tig00020806.8 no hits & (original description: no original description) 0.7703971697236096 93 evm.model.tig00021038.17 no hits & (original description: no original description) 0.7701283690989744 94 evm.model.tig00000317.21 no hits & (original description: no original description) 0.7689522393529535 96 evm.model.tig00021094.7 (q9zwi9|phyc_orysa : 156.0) Phytochrome C - Oryza sativa (Rice) & (at5g35840 : 144.0) Encodes the apoprotein of phytochrome;one of a family of photoreceptors that modulate plant growth and development.; phytochrome C (PHYC); FUNCTIONS IN: protein histidine kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome A (TAIR:AT1G09570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 288.0) & (original description: no original description) 0.7687351983878559 97