Sequence Description Alias PCC hrr evm.model.tig00020909.45 no hits & (original description: no original description) 0.9281581227824159 6 evm.model.tig00020537.65 (q5z987|atr_orysa : 139.0) Serine/threonine-protein kinase ATR (EC 2.7.11.1) - Oryza sativa (Rice) & (at5g40820 : 127.0) Encodes a Arabidopsis ortholog of the ATR protein kinase that is involved in a wide range of responses to DNA damage and plays a central role in cell-cycle regulation. Dominant loss of function alleles identified as suppressors of ALS also exhibit increased tolerance to aluminum. This may be due to the inhibition of terminal differentiation of the root apex upon exposure to Al.; Ataxia telangiectasia-mutated and RAD3-related (ATR); FUNCTIONS IN: protein serine/threonine kinase activity, inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; INVOLVED IN: in 9 processes; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403), UME (InterPro:IPR012993), Protein kinase-like domain (InterPro:IPR011009), PIK-related kinase, FAT (InterPro:IPR003151), Armadillo-type fold (InterPro:IPR016024), PIK-related kinase (InterPro:IPR014009), Phosphatidylinositol 3/4-kinase, conserved site (InterPro:IPR018936), PIK-related kinase, FATC (InterPro:IPR003152); BEST Arabidopsis thaliana protein match is: ataxia-telangiectasia mutated (TAIR:AT3G48190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 254.0) & (original description: no original description) 0.9108185676774164 10 evm.model.tig00000342.31 no hits & (original description: no original description) 0.9094405317150105 16 evm.model.tig00000581.7 no hits & (original description: no original description) 0.9008459495813048 19 evm.model.tig00000145.14 no hits & (original description: no original description) 0.9006516329976908 20 evm.model.tig00001017.3 no hits & (original description: no original description) 0.8997287331091672 28 evm.model.tig00000217.37 no hits & (original description: no original description) 0.898837222102763 17 evm.model.tig00000431.20 no hits & (original description: no original description) 0.8961654089657477 13 evm.model.tig00021350.41 (original description: no original description) 0.8918149026382771 39 evm.model.tig00001030.34 no hits & (original description: no original description) 0.8916077439947279 10 evm.model.tig00021350.42 no hits & (original description: no original description) 0.8899112260998544 11 evm.model.tig00000169.15 (original description: no original description) 0.8898808953002846 35 evm.model.tig00000581.6 no hits & (original description: no original description) 0.8872259031441248 17 evm.model.tig00000042.101 (original description: no original description) 0.8824307924056916 37 evm.model.tig00000718.19 no hits & (original description: no original description) 0.8821099155998543 22 evm.model.tig00000169.13 (original description: no original description) 0.8782752419979524 31 evm.model.tig00020553.253 no hits & (original description: no original description) 0.875979831908012 17 evm.model.tig00000949.33 no hits & (original description: no original description) 0.8755127044569866 30 evm.model.tig00001206.27 (original description: no original description) 0.874587443800905 44 evm.model.tig00000158.21 no hits & (original description: no original description) 0.8729120663338197 20 evm.model.tig00020604.9 no hits & (original description: no original description) 0.8718640835013837 21 evm.model.tig00021462.18 no hits & (original description: no original description) 0.8683012313252007 35 evm.model.tig00000042.100 (original description: no original description) 0.868138926256093 66 evm.model.tig00000194.61 (original description: no original description) 0.8650962862060924 29 evm.model.tig00020553.252 no hits & (original description: no original description) 0.8583315750068355 25 evm.model.tig00021017.28 (original description: no original description) 0.8582508519290207 43 evm.model.tig00020556.87 no hits & (original description: no original description) 0.8580090823699823 98 evm.model.tig00000194.26 (at3g12810 : 251.0) Encodes a protein similar to ATP-dependent, chromatin-remodeling proteins of the ISWI and SWI2/SNF2 family. Genetic analyses suggest that this gene is involved in multiple flowering pathways. Mutations in PIE1 results in suppression of FLC-mediated delay of flowering and causes early flowering in noninductive photoperiods independently of FLC. PIE1 is required for expression of FLC in the shoot apex but not in the root.Along with ARP6 forms a complex to deposit modified histone H2A.Z at several loci within the genome. This modification alters the expression of the target genes (i.e. FLC, MAF4, MAF6).; PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 (PIE1); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: in 6 processes; LOCATED IN: SWI/SNF complex, cell wall, chromatin remodeling complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: HSA (InterPro:IPR006562), HAS subgroup (InterPro:IPR013999), Helicase/SANT-associated, DNA binding (InterPro:IPR014012), SNF2-related (InterPro:IPR000330), MYB-like (InterPro:IPR017877), SANT, DNA-binding (InterPro:IPR001005), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: INO80 ortholog (TAIR:AT3G57300.1); Has 42311 Blast hits to 26312 proteins in 2357 species: Archae - 246; Bacteria - 10217; Metazoa - 11172; Fungi - 7336; Plants - 2916; Viruses - 500; Other Eukaryotes - 9924 (source: NCBI BLink). & (q7g8y3|isw2_orysa : 143.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 502.0) & (original description: no original description) 0.8572371630318252 43 evm.model.tig00000142.7 (original description: no original description) 0.8567744909276892 99 evm.model.tig00021537.68 (at2g17930 : 373.0) Phosphatidylinositol 3- and 4-kinase family protein with FAT domain; FUNCTIONS IN: inositol or phosphatidylinositol kinase activity, binding, phosphotransferase activity, alcohol group as acceptor; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol 3-/4-kinase, catalytic (InterPro:IPR000403), PIK-related kinase, FAT (InterPro:IPR003151), PIK-related kinase (InterPro:IPR014009), Armadillo-type fold (InterPro:IPR016024), PIK-related kinase, FATC (InterPro:IPR003152), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: phosphotransferases, alcohol group as acceptor;binding;inositol or phosphatidylinositol kinases (TAIR:AT4G36080.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 746.0) & (original description: no original description) 0.8562576927540375 72 evm.model.tig00020848.63 no hits & (original description: no original description) 0.8540109648068928 31 evm.model.tig00000670.32 no hits & (original description: no original description) 0.8464404572057154 34 evm.model.tig00020616.21 no hits & (original description: no original description) 0.8438148191222412 85 evm.model.tig00020572.41 no hits & (original description: no original description) 0.8427776276999268 36 evm.model.tig00021590.1 (original description: no original description) 0.8422711377939333 37 evm.model.tig00000158.13 (at4g18130 : 197.0) member of Histidine Kinase; phytochrome E (PHYE); FUNCTIONS IN: protein histidine kinase activity, G-protein coupled photoreceptor activity, signal transducer activity; INVOLVED IN: in 8 processes; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome B (TAIR:AT2G18790.1); Has 25391 Blast hits to 25044 proteins in 3724 species: Archae - 289; Bacteria - 19481; Metazoa - 8; Fungi - 476; Plants - 4006; Viruses - 9; Other Eukaryotes - 1122 (source: NCBI BLink). & (p36505|phy1_phypa : 194.0) Phytochrome 1 - Physcomitrella patens (Moss) & (reliability: 394.0) & (original description: no original description) 0.8419769294054898 48 evm.model.tig00020556.28 no hits & (original description: no original description) 0.8407262433890721 52 evm.model.tig00000042.116 no hits & (original description: no original description) 0.8395097093269415 48 evm.model.tig00000404.40 (original description: no original description) 0.8390708568123489 72 evm.model.tig00000194.62 (original description: no original description) 0.8381378434114656 59 evm.model.tig00020554.37 (at4g38600 : 309.0) encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content.; KAKTUS (KAK); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: trichome branching, DNA endoreduplication; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024), HECT (InterPro:IPR000569); BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase 4 (TAIR:AT5G02880.1); Has 6273 Blast hits to 5534 proteins in 324 species: Archae - 2; Bacteria - 240; Metazoa - 3391; Fungi - 909; Plants - 600; Viruses - 3; Other Eukaryotes - 1128 (source: NCBI BLink). & (reliability: 618.0) & (original description: no original description) 0.8379985478295784 79 evm.model.tig00000042.91 (at4g17140 : 114.0) pleckstrin homology (PH) domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Protein of unknown function DUF946 (InterPro:IPR009291), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: calcium-dependent lipid-binding family protein (TAIR:AT1G48090.1). & (reliability: 228.0) & (original description: no original description) 0.836135030071777 54 evm.model.tig00000431.19 no hits & (original description: no original description) 0.8329304621189999 54 evm.model.tig00020848.62 no hits & (original description: no original description) 0.8323520690927165 49 evm.model.tig00000849.40 no hits & (original description: no original description) 0.8301933245429485 55 evm.model.tig00000828.11 (q39610|dyha_chlre : 234.0) Dynein alpha chain, flagellar outer arm (DHC alpha) - Chlamydomonas reinhardtii & (at1g18610 : 95.9) Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G74150.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 191.8) & (original description: no original description) 0.829232969917594 60 evm.model.tig00001030.33 no hits & (original description: no original description) 0.8285784964686074 66 evm.model.tig00000241.15 (at4g35800 : 1627.0) Encodes the unique largest subunit of nuclear DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB1 and a homolog of the E. coli RNA polymerase beta prime subunit.; RNA polymerase II large subunit (NRPB1); FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription, transcription from RNA polymerase II promoter; LOCATED IN: nucleus, chloroplast, DNA-directed RNA polymerase II, core complex, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal (InterPro:IPR006592), RNA polymerase, alpha subunit (InterPro:IPR000722), RNA polymerase II, heptapeptide repeat, eukaryotic (InterPro:IPR000684), RNA polymerase Rpb1, domain 7 (InterPro:IPR007073), RNA polymerase Rpb1, domain 3 (InterPro:IPR007066), RNA polymerase Rpb1, domain 1 (InterPro:IPR007080), RNA polymerase Rpb1, domain 4 (InterPro:IPR007083), RNA polymerase Rpb1, domain 5 (InterPro:IPR007081), RNA polymerase Rpb1, domain 6 (InterPro:IPR007075); BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1 (TAIR:AT5G60040.1); Has 181834 Blast hits to 82224 proteins in 9254 species: Archae - 731; Bacteria - 33255; Metazoa - 56600; Fungi - 34284; Plants - 19037; Viruses - 3576; Other Eukaryotes - 34351 (source: NCBI BLink). & (q9tl05|rpoc1_nepol : 127.0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) - Nephroselmis olivacea & (reliability: 3254.0) & (original description: no original description) 0.8268952555393289 79 evm.model.tig00022075.31 (original description: no original description) 0.8257340806046676 71 evm.model.tig00020553.150 no hits & (original description: no original description) 0.8246853441059979 59 evm.model.tig00000480.16 no hits & (original description: no original description) 0.8242126327069381 60 evm.model.tig00000076.76 no hits & (original description: no original description) 0.824073658481508 61 evm.model.tig00020892.18 no hits & (original description: no original description) 0.8181892877465837 75 evm.model.tig00000889.16 (at4g15570 : 191.0) Similar to yeast Sen1 (splicing endonuclease 1)helicase protein. Involved in female gametophyte development.; MAGATAMA 3 (MAA3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen-pistil interaction, pollen tube guidance, embryo sac development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G16800.1); Has 6636 Blast hits to 6003 proteins in 1303 species: Archae - 237; Bacteria - 1922; Metazoa - 1300; Fungi - 1113; Plants - 639; Viruses - 442; Other Eukaryotes - 983 (source: NCBI BLink). & (reliability: 382.0) & (original description: no original description) 0.81796113299375 68 evm.model.tig00000241.172 no hits & (original description: no original description) 0.8118074426891123 73 evm.model.tig00000382.27 no hits & (original description: no original description) 0.8105406819630085 74 evm.model.tig00000949.34 no hits & (original description: no original description) 0.7958535874375852 92 evm.model.tig00000523.49 no hits & (original description: no original description) 0.7950266175568251 95 evm.model.tig00020592.62 no hits & (original description: no original description) 0.7918964781853902 99