Sequence Description Alias PCC hrr evm.model.tig00020675.59 no hits & (original description: no original description) 0.9046746300628467 1 evm.model.tig00020556.44 (at3g27710 : 223.0) ARIADNE 3 (ARI3); FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT4G34370.1); Has 3131 Blast hits to 3105 proteins in 234 species: Archae - 0; Bacteria - 4; Metazoa - 1303; Fungi - 627; Plants - 676; Viruses - 17; Other Eukaryotes - 504 (source: NCBI BLink). & (reliability: 446.0) & (original description: no original description) 0.8746337332434428 2 evm.model.tig00000767.14 no hits & (original description: no original description) 0.863199077602368 3 evm.model.tig00000796.9 no hits & (original description: no original description) 0.8500309394386593 4 evm.model.tig00000269.79 no hits & (original description: no original description) 0.8461821375434362 11 evm.model.tig00000133.10 no hits & (original description: no original description) 0.8359475433497252 6 evm.model.tig00020713.12 no hits & (original description: no original description) 0.8335439180376958 7 evm.model.tig00021036.26 no hits & (original description: no original description) 0.8227534368911917 11 evm.model.tig00020710.108 no hits & (original description: no original description) 0.820023190584869 10 evm.model.tig00000622.11 no hits & (original description: no original description) 0.8191822039956448 17 evm.model.tig00000949.17 (at5g41360 : 573.0) Encodes XPB2, a DNA repair protein and transcription factor. Arabidopsis thaliana has duplicated XPB gene (AtXPB1 and AtXPB2, with high similarity to each other). XPB proteins are involved in both DNA repair and transcription, they are component of the transcription factor IIH (TFIIH) and are responsible for DNA helicase activity during nucleotide (nt) excision repair (NER). Complementation assays in yeast rad25 mutant strains suggest the involvement of AtXPB2 in DNA repair. Although both genes are expressed in a constitutive manner during the plant life cycle, Northern blot analyses suggest that light modulates the expression level of both XPB copies.; homolog of Xeroderma pigmentosum complementation group B 2 (XPB2); FUNCTIONS IN: in 7 functions; INVOLVED IN: response to UV-B, N-terminal protein myristoylation; EXPRESSED IN: whole plant; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001), Xeroderma pigmentosum group B protein (XP-B) (InterPro:IPR001161), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: homolog of xeroderma pigmentosum complementation group B 1 (TAIR:AT5G41370.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1146.0) & (original description: no original description) 0.8180396420187804 11 evm.model.tig00020964.20 no hits & (original description: no original description) 0.8172558156956253 12 evm.model.tig00020849.14 no hits & (original description: no original description) 0.8171439906480056 18 evm.model.tig00000949.18 no hits & (original description: no original description) 0.8113800228723017 60 evm.model.tig00000718.8 (o23920|hppd_dauca : 125.0) 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) - Daucus carota (Carrot) & (at1g06570 : 104.0) Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants.; phytoene desaturation 1 (PDS1); CONTAINS InterPro DOMAIN/s: 4-hydroxyphenylpyruvate dioxygenase (InterPro:IPR005956), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); Has 2393 Blast hits to 2392 proteins in 824 species: Archae - 3; Bacteria - 1672; Metazoa - 205; Fungi - 157; Plants - 91; Viruses - 0; Other Eukaryotes - 265 (source: NCBI BLink). & (reliability: 208.0) & (original description: no original description) 0.799856783727976 15 evm.model.tig00001376.14 no hits & (original description: no original description) 0.794780436809164 90 evm.model.tig00021374.5 no hits & (original description: no original description) 0.7880498521907601 17 evm.model.tig00000093.155 no hits & (original description: no original description) 0.787103117665822 20 evm.model.tig00021017.26 no hits & (original description: no original description) 0.7849872939316148 19 evm.model.tig00020944.23 no hits & (original description: no original description) 0.7791971599867819 21 evm.model.tig00001718.2 no hits & (original description: no original description) 0.778813283508944 56 evm.model.tig00020563.7 (at5g35410 : 142.0) encodes a member of the CBL-interacting protein kinase family, is a regulatory component controlling plant potassium nutrition; SALT OVERLY SENSITIVE 2 (SOS2); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: CBL-interacting protein kinase 8 (TAIR:AT4G24400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 131.0) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 284.0) & (original description: no original description) 0.778678264938459 47 evm.model.tig00021489.5 no hits & (original description: no original description) 0.7773654240925798 23 evm.model.tig00000123.19 (at4g19670 : 110.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G60250.1); Has 3330 Blast hits to 3305 proteins in 225 species: Archae - 1; Bacteria - 6; Metazoa - 1257; Fungi - 660; Plants - 920; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink). & (reliability: 220.0) & (original description: no original description) 0.7767099707425269 74 evm.model.tig00020704.29 no hits & (original description: no original description) 0.7754085186818567 35 evm.model.tig00000042.175 no hits & (original description: no original description) 0.7753329487614975 26 evm.model.tig00000882.38 no hits & (original description: no original description) 0.7748616859488021 27 evm.model.tig00000269.81 no hits & (original description: no original description) 0.7742797661497584 53 evm.model.tig00000342.51 (at5g55760 : 167.0) Encodes SRT1, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).; sirtuin 1 (SRT1); FUNCTIONS IN: NAD binding, DNA binding, zinc ion binding, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; INVOLVED IN: protein amino acid deacetylation, chromatin silencing, regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: chromatin silencing complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent histone deacetylase, silent information regulator Sir2 (InterPro:IPR003000); BEST Arabidopsis thaliana protein match is: sirtuin 2 (TAIR:AT5G09230.7); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 334.0) & (original description: no original description) 0.7727654694451241 55 evm.model.tig00020938.4 no hits & (original description: no original description) 0.7722397344598428 30 evm.model.tig00000955.35 no hits & (original description: no original description) 0.7718346636090224 31 evm.model.tig00020780.34 no hits & (original description: no original description) 0.7695477359917416 67 evm.model.tig00021072.15 no hits & (original description: no original description) 0.7646562678767592 40 evm.model.tig00020553.231 no hits & (original description: no original description) 0.7637236932914084 62 evm.model.tig00000788.7 no hits & (original description: no original description) 0.7633453749126412 37 evm.model.tig00000269.78 no hits & (original description: no original description) 0.7632224458905416 46 evm.model.tig00000269.96 no hits & (original description: no original description) 0.7626793005392245 66 evm.model.tig00020807.8 no hits & (original description: no original description) 0.7613061718615255 42 evm.model.tig00000545.17 (at5g37350 : 244.0) Serine/threonine-protein kinase Rio1; FUNCTIONS IN: protein serine/threonine kinase activity, catalytic activity, ATP binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: RIO-like kinase (InterPro:IPR018934), RIO kinase, conserved site (InterPro:IPR018935), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Serine/threonine-protein kinase Rio1 (TAIR:AT2G24990.1); Has 12052 Blast hits to 6663 proteins in 769 species: Archae - 380; Bacteria - 822; Metazoa - 4616; Fungi - 1157; Plants - 579; Viruses - 131; Other Eukaryotes - 4367 (source: NCBI BLink). & (reliability: 488.0) & (original description: no original description) 0.7612296145085994 43 evm.model.tig00020515.13 no hits & (original description: no original description) 0.7609489084749593 44 evm.model.tig00001027.12 no hits & (original description: no original description) 0.7608164304563824 49 evm.model.tig00000254.115 (at4g01400 : 358.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 40053 Blast hits to 12380 proteins in 263 species: Archae - 4; Bacteria - 27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses - 0; Other Eukaryotes - 935 (source: NCBI BLink). & (reliability: 716.0) & (original description: no original description) 0.7583992099199677 46 evm.model.tig00021433.25 (at3g57330 : 682.0) autoinhibited Ca2+-ATPase 11 (ACA11); FUNCTIONS IN: calcium-transporting ATPase activity, calmodulin binding; INVOLVED IN: defense response to bacterium, negative regulation of programmed cell death, anion homeostasis; LOCATED IN: plant-type vacuole membrane, chloroplast, plasma membrane, vacuole; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated domain (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana protein match is: autoinhibited Ca(2+)-ATPase, isoform 4 (TAIR:AT2G41560.1); Has 45492 Blast hits to 34566 proteins in 3220 species: Archae - 840; Bacteria - 31068; Metazoa - 4067; Fungi - 2704; Plants - 2054; Viruses - 3; Other Eukaryotes - 4756 (source: NCBI BLink). & (q2qmx9|aca1_orysa : 642.0) Calcium-transporting ATPase 1, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope ATPase 1) - Oryza sativa (Rice) & (reliability: 1364.0) & (original description: no original description) 0.7541099744562089 48 evm.model.tig00020537.6 (at3g04710 : 99.4) ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Tetratricopeptide-like helical (InterPro:IPR011990), Ankyrin repeat-containing domain (InterPro:IPR020683), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1685) (TAIR:AT3G04700.1). & (reliability: 198.8) & (original description: no original description) 0.754101227663049 49 evm.model.tig00000788.5 no hits & (original description: no original description) 0.7540780905310763 50 evm.model.tig00021179.84 (at3g16340 : 211.0) pleiotropic drug resistance 1 (PDR1); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), Pleiotropic drug resistance protein PDR (InterPro:IPR005285), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 7 (TAIR:AT1G15210.1). & (q7fmw4|pdr15_orysa : 207.0) Pleiotropic drug resistance protein 15 - Oryza sativa (Rice) & (reliability: 422.0) & (original description: no original description) 0.7527804901744523 71 evm.model.tig00000133.9 no hits & (original description: no original description) 0.7490093173722949 53 evm.model.tig00020965.40 no hits & (original description: no original description) 0.7481717416622892 55 evm.model.tig00020938.3 no hits & (original description: no original description) 0.7476829881511683 56 evm.model.tig00020629.8 no hits & (original description: no original description) 0.747342846071381 58 evm.model.tig00000788.6 no hits & (original description: no original description) 0.7465107207190871 59 evm.model.tig00021742.16 (at1g08860 : 186.0) Encodes a copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Overexpression of this gene suppresses bon1-1 phenotypes. Double mutant analyses with bon1-1 suggest that BON1 and BON3 have overlapping functions in maintaining cellular homeostasis and inhibiting cell death.; BONZAI 3 (BON3); FUNCTIONS IN: calcium-dependent phospholipid binding; INVOLVED IN: N-terminal protein myristoylation, cellular homeostasis, positive regulation of cellular defense response, negative regulation of cell death; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Copine (InterPro:IPR010734), C2 calcium-dependent membrane targeting (InterPro:IPR000008), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT5G61910.4); Has 1559 Blast hits to 1479 proteins in 107 species: Archae - 0; Bacteria - 0; Metazoa - 903; Fungi - 12; Plants - 319; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink). & (reliability: 372.0) & (original description: no original description) 0.7462959936006762 60 evm.model.tig00000361.48 no hits & (original description: no original description) 0.7453924313012694 62 evm.model.tig00000076.44 no hits & (original description: no original description) 0.7444751455280151 63 evm.model.tig00020965.41 no hits & (original description: no original description) 0.7429735036662725 65 evm.model.tig00020685.20 no hits & (original description: no original description) 0.7409721073752723 67 evm.model.tig00000788.4 no hits & (original description: no original description) 0.7388069653495621 70 evm.model.tig00000718.9 no hits & (original description: no original description) 0.7376689294675102 71 evm.model.tig00020848.29 (at5g23080 : 173.0) Interacts with TATA-box binding protein 2. Contains domains with strong similarity to G-patch and SWAP domains, characteristic of RNA binding and processing proteins. Colocalizes with the splicing regulator SRp34 to subnuclear particles. Role in RNA binding or processing. Mutants display developmental defects, including reduced plant height, polycotyly, and reduced vascularization. Strong genetic interaction between TGH and AMP1.; TOUGH (TGH); FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: multicellular organismal development, phloem or xylem histogenesis, RNA processing; LOCATED IN: nucleus; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1604 (InterPro:IPR011666), SWAP/Surp (InterPro:IPR000061); Has 34900 Blast hits to 18983 proteins in 949 species: Archae - 12; Bacteria - 1329; Metazoa - 18979; Fungi - 3127; Plants - 2236; Viruses - 165; Other Eukaryotes - 9052 (source: NCBI BLink). & (reliability: 346.0) & (original description: no original description) 0.7356255140216088 73 evm.model.tig00000788.8 no hits & (original description: no original description) 0.7333008768002132 74 evm.model.tig00020703.4 no hits & (original description: no original description) 0.7320303884976495 92 evm.model.tig00020801.42 no hits & (original description: no original description) 0.7316705059540201 78 evm.model.tig00020996.33 no hits & (original description: no original description) 0.7305141269222691 81 evm.model.tig00000555.14 no hits & (original description: no original description) 0.7301064205674279 82 evm.model.tig00020912.76 no hits & (original description: no original description) 0.729252765311312 91 evm.model.tig00000248.22 no hits & (original description: no original description) 0.7274308117664492 85 evm.model.tig00000310.14 no hits & (original description: no original description) 0.7261745786957762 89 evm.model.tig00001030.5 (at5g49930 : 226.0) embryo defective 1441 (emb1441); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fibronectin-binding A, N-terminal (InterPro:IPR008616), Protein of unknown function DUF3441 (InterPro:IPR021846), Zinc finger, CCHC-type (InterPro:IPR001878), Protein of unknown function DUF814 (InterPro:IPR008532); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 452.0) & (original description: no original description) 0.7249716570509132 90 evm.model.tig00000857.19 (at2g32070 : 324.0) Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G80780.2); Has 941 Blast hits to 931 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 285; Fungi - 149; Plants - 385; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). & (reliability: 648.0) & (original description: no original description) 0.724714716219506 93 evm.model.tig00000194.56 no hits & (original description: no original description) 0.7245450782355325 95 evm.model.tig00001373.12 no hits & (original description: no original description) 0.7221807470433969 97 evm.model.tig00000378.27 no hits & (original description: no original description) 0.7201372204363187 100