Sequence Description Alias PCC hrr evm.model.tig00021366.20 no hits & (original description: no original description) 0.9259156306877873 3 evm.model.tig00000144.190 no hits & (original description: no original description) 0.9075444393229397 3 evm.model.tig00021366.19 no hits & (original description: no original description) 0.9060025592090456 4 evm.model.tig00020995.8 no hits & (original description: no original description) 0.8921729865886906 6 evm.model.tig00000137.3 no hits & (original description: no original description) 0.8851914537940568 6 evm.model.tig00020951.24 no hits & (original description: no original description) 0.8825235827999626 6 evm.model.tig00021168.7 no hits & (original description: no original description) 0.880809372750539 32 evm.model.tig00000403.71 no hits & (original description: no original description) 0.8779760866675601 9 evm.model.tig00001368.2 no hits & (original description: no original description) 0.8740583737037941 9 evm.model.tig00001284.11 no hits & (original description: no original description) 0.8733640193909117 10 evm.model.tig00000093.145 no hits & (original description: no original description) 0.8680291505811623 26 evm.model.tig00020723.93 no hits & (original description: no original description) 0.8601376297817931 12 evm.model.tig00020996.12 no hits & (original description: no original description) 0.8586177163419944 39 evm.model.tig00000498.19 no hits & (original description: no original description) 0.8546398206380664 14 evm.model.tig00021043.6 no hits & (original description: no original description) 0.8513920711622442 15 evm.model.tig00020515.1 no hits & (original description: no original description) 0.8481108857872958 16 evm.model.tig00020921.1 no hits & (original description: no original description) 0.8479418019367513 18 evm.model.tig00020903.7 no hits & (original description: no original description) 0.8468617150787331 21 evm.model.tig00001307.2 (at3g13530 : 161.0) MAP3K epsilon protein kinase 1 is functionally redundant with MAP3Ke2. Required for pollen development but not essential. map3ke1;map3ke2 double-mutant pollen grains develop plasma membrane irregularities following pollen mitosis I. Localized primarily in the plasma membrane. Expressed in leaf trichomes, root columella cells and developing ovules.; mitogen-activated protein kinase kinase kinase 7 (MAPKKK7); FUNCTIONS IN: protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: plasma membrane organization, pollen development; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: ovule developmental stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: mitogen-activated protein kinase kinase kinase 6 (TAIR:AT3G07980.1); Has 137235 Blast hits to 134768 proteins in 5401 species: Archae - 190; Bacteria - 15422; Metazoa - 52001; Fungi - 13364; Plants - 33616; Viruses - 670; Other Eukaryotes - 21972 (source: NCBI BLink). & (reliability: 322.0) & (original description: no original description) 0.8399089339793919 28 evm.model.tig00000711.2 no hits & (original description: no original description) 0.8376010904106065 41 evm.model.tig00021168.48 no hits & (original description: no original description) 0.8344942909958137 70 evm.model.tig00001365.10 (at4g13250 : 83.2) Encodes a chlorophyll b reductase involved in the degradation of chlorophyll b and LHCII (light harvesting complex II).; NON-YELLOW COLORING 1 (NYC1); CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NYC1-like (TAIR:AT5G04900.1). & (reliability: 166.4) & (original description: no original description) 0.8326692482084002 22 evm.model.tig00021617.4 no hits & (original description: no original description) 0.8278397490288355 64 evm.model.tig00000553.17 (at4g17740 : 94.7) Peptidase S41 family protein; FUNCTIONS IN: serine-type peptidase activity; INVOLVED IN: proteolysis, intracellular signaling pathway; LOCATED IN: thylakoid, thylakoid lumen, mitochondrion, chloroplast thylakoid lumen; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S41 (InterPro:IPR005151), PDZ/DHR/GLGF (InterPro:IPR001478), Peptidase S41A, C-terminal peptidase (InterPro:IPR004447); BEST Arabidopsis thaliana protein match is: Peptidase S41 family protein (TAIR:AT3G57680.1); Has 9160 Blast hits to 9150 proteins in 1973 species: Archae - 0; Bacteria - 5658; Metazoa - 14; Fungi - 0; Plants - 153; Viruses - 0; Other Eukaryotes - 3335 (source: NCBI BLink). & (reliability: 180.2) & (original description: no original description) 0.8269007919009548 39 evm.model.tig00021217.5 no hits & (original description: no original description) 0.8228233055688273 69 evm.model.tig00000237.5 no hits & (original description: no original description) 0.8209362908529867 26 evm.model.tig00000057.19 no hits & (original description: no original description) 0.8195887080722979 27 evm.model.tig00021137.20 (at1g66340 : 141.0) Similar to prokaryote sensory transduction proteins. Contains a histidine kinase and a response regulator domain. Homodimer. Membrane component. Binds ethylene. Mutations affect ethylene binding and metabolism of other plant hormones such as auxin, cytokinins, ABA and gibberellic acid. Ethylene receptor. Has histidine kinase activity. Is regulated by RTE1.; ETHYLENE RESPONSE 1 (ETR1); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction histidine kinase, hybrid-type, ethylene sensor (InterPro:IPR014525), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), GAF (InterPro:IPR003018), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: ethylene response sensor 1 (TAIR:AT2G40940.1); Has 102721 Blast hits to 98263 proteins in 3046 species: Archae - 757; Bacteria - 90102; Metazoa - 18; Fungi - 1611; Plants - 2314; Viruses - 21; Other Eukaryotes - 7898 (source: NCBI BLink). & (o49230|etr1_braol : 141.0) Ethylene receptor (EC 2.7.13.3) - Brassica oleracea (Wild cabbage) & (reliability: 282.0) & (original description: no original description) 0.8179153454909143 28 evm.model.tig00000405.16 (at3g07090 : 102.0) PPPDE putative thiol peptidase family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT5G25170.1); Has 872 Blast hits to 872 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 235; Fungi - 119; Plants - 332; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description) 0.8178378243817076 47 evm.model.tig00000540.18 no hits & (original description: no original description) 0.8176807825479088 43 evm.model.tig00021435.30 no hits & (original description: no original description) 0.8175009696271679 96 evm.model.tig00000489.17 (at4g02070 : 353.0) encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.; MUTS homolog 6 (MSH6); FUNCTIONS IN: damaged DNA binding; INVOLVED IN: mismatch repair; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein Msh6 (InterPro:IPR017261), DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-homologue MSH6 (InterPro:IPR015536), Tudor domain (InterPro:IPR002999); BEST Arabidopsis thaliana protein match is: homolog of DNA mismatch repair protein MSH3 (TAIR:AT4G25540.1). & (q9xgc9|msh2_maize : 149.0) DNA mismatch repair protein MSH2 (MUS1) - Zea mays (Maize) & (reliability: 706.0) & (original description: no original description) 0.8144850143607139 47 evm.model.tig00000903.3 no hits & (original description: no original description) 0.8121060132984579 35 evm.model.tig00001366.3 no hits & (original description: no original description) 0.8111044684614981 36 evm.model.tig00000507.28 no hits & (original description: no original description) 0.8105814372818874 96 evm.model.tig00021582.44 (at5g35840 : 84.3) Encodes the apoprotein of phytochrome;one of a family of photoreceptors that modulate plant growth and development.; phytochrome C (PHYC); FUNCTIONS IN: protein histidine kinase activity; INVOLVED IN: in 8 processes; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PAC motif (InterPro:IPR001610), Phytochrome, central region (InterPro:IPR013515), Signal transduction histidine kinase, core (InterPro:IPR005467), PAS fold (InterPro:IPR013767), PAS (InterPro:IPR000014), Phytochrome chromophore attachment domain (InterPro:IPR016132), ATPase-like, ATP-binding domain (InterPro:IPR003594), PAS fold-2 (InterPro:IPR013654), Phytochrome A/B/C/D/E (InterPro:IPR012129), Phytochrome (InterPro:IPR001294), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Phytochrome chromophore binding site (InterPro:IPR013516), GAF (InterPro:IPR003018); BEST Arabidopsis thaliana protein match is: phytochrome A (TAIR:AT1G09570.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p36505|phy1_phypa : 84.0) Phytochrome 1 - Physcomitrella patens (Moss) & (reliability: 168.6) & (original description: no original description) 0.8097325951111431 38 evm.model.tig00000383.60 (at1g10760 : 187.0) Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position.; STARCH EXCESS 1 (SEX1); FUNCTIONS IN: protein binding, alpha-glucan, water dikinase activity; INVOLVED IN: cold acclimation, response to symbiotic fungus, response to trehalose stimulus, circadian rhythm, starch catabolic process; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate phosphate dikinase, PEP/pyruvate-binding (InterPro:IPR002192); BEST Arabidopsis thaliana protein match is: phosphoglucan, water dikinase (TAIR:AT4G24450.1); Has 2623 Blast hits to 2596 proteins in 1116 species: Archae - 196; Bacteria - 1989; Metazoa - 24; Fungi - 8; Plants - 221; Viruses - 0; Other Eukaryotes - 185 (source: NCBI BLink). & (q9awa5|gwd1_soltu : 177.0) Alpha-glucan water dikinase, chloroplast precursor (EC 2.7.9.4) (EC 2.7.13.3) (Starch-related R1 protein) - Solanum tuberosum (Potato) & (reliability: 374.0) & (original description: no original description) 0.8091958321242688 41 evm.model.tig00021314.21 no hits & (original description: no original description) 0.8065422888820278 51 evm.model.tig00000342.19 no hits & (original description: no original description) 0.8060385411981125 73 evm.model.tig00001604.5 no hits & (original description: no original description) 0.8059281211526678 75 evm.model.tig00000630.9 (at4g23470 : 104.0) PLAC8 family protein; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT1G63830.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 208.0) & (original description: no original description) 0.8053075859034553 80 evm.model.tig00000246.7 no hits & (original description: no original description) 0.8041664409193338 46 evm.model.tig00021374.7 no hits & (original description: no original description) 0.803712419407469 57 evm.model.tig00021365.10 no hits & (original description: no original description) 0.8030415053136436 48 evm.model.tig00001415.17 no hits & (original description: no original description) 0.8020874445089349 49 evm.model.tig00000114.28 no hits & (original description: no original description) 0.8018352450401517 50 evm.model.tig00000246.6 no hits & (original description: no original description) 0.8017784340694666 63 evm.model.tig00000711.1 no hits & (original description: no original description) 0.8007666045524571 62 evm.model.tig00000114.29 no hits & (original description: no original description) 0.799782537927493 81 evm.model.tig00021580.6 no hits & (original description: no original description) 0.7989305505901285 55 evm.model.tig00021094.36 no hits & (original description: no original description) 0.7978093170582233 57 evm.model.tig00000741.20 no hits & (original description: no original description) 0.7977913963080316 58 evm.model.tig00021123.21 no hits & (original description: no original description) 0.7963238452234624 59 evm.model.tig00021314.20 no hits & (original description: no original description) 0.7953288283901225 61 evm.model.tig00000093.149 no hits & (original description: no original description) 0.795012259119926 62 evm.model.tig00021357.23 no hits & (original description: no original description) 0.793060794977539 75 evm.model.tig00000553.44 (at4g00370 : 107.0) Encodes an inorganic phosphate transporter (PHT4;4).; ANTR2; FUNCTIONS IN: organic anion transmembrane transporter activity, inorganic phosphate transmembrane transporter activity; INVOLVED IN: transmembrane transport; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: phosphate transporter 4;1 (TAIR:AT2G29650.1); Has 37886 Blast hits to 37799 proteins in 2473 species: Archae - 506; Bacteria - 30466; Metazoa - 2514; Fungi - 1637; Plants - 427; Viruses - 0; Other Eukaryotes - 2336 (source: NCBI BLink). & (reliability: 214.0) & (original description: no original description) 0.7921362282838408 66 evm.model.tig00000194.97 no hits & (original description: no original description) 0.7887026674215835 71 evm.model.tig00000663.29 (at4g34280 : 264.0) transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: U2A'/phosphoprotein 32 family A, C-terminal (InterPro:IPR003603), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G61210.2); Has 5718 Blast hits to 4596 proteins in 341 species: Archae - 5; Bacteria - 811; Metazoa - 2365; Fungi - 1046; Plants - 644; Viruses - 0; Other Eukaryotes - 847 (source: NCBI BLink). & (reliability: 528.0) & (original description: no original description) 0.7863098042704557 87 evm.model.tig00020537.61 no hits & (original description: no original description) 0.7857342528433507 74 evm.model.tig00000204.7 no hits & (original description: no original description) 0.7832540359467165 78 evm.model.tig00020909.13 no hits & (original description: no original description) 0.7803221729700747 82 evm.model.tig00000310.33 no hits & (original description: no original description) 0.7774342987666999 87 evm.model.tig00000053.15 (at5g61960 : 235.0) A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML1 is a member of two sister clades of mei2-like gene family, AML1 through AML5 and belongs to the clade named ALM14. AML1 is expressed during early embryo development, particularly along embryonic axis at torpedo stage, in shoot apex (weaker expression) and in the organogenic regions of floral apices.; MEI2-like protein 1 (ML1); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: MEI2-like 4 (TAIR:AT5G07290.1); Has 4583 Blast hits to 4209 proteins in 289 species: Archae - 0; Bacteria - 6; Metazoa - 2486; Fungi - 644; Plants - 914; Viruses - 0; Other Eukaryotes - 533 (source: NCBI BLink). & (q27k34|pla2_orysa : 122.0) Protein terminal ear1 homolog (Protein PLASTOCHRON2) (Protein LEAFY HEAD2) - Oryza sativa (Rice) & (reliability: 470.0) & (original description: no original description) 0.7766745131076411 91 evm.model.tig00000640.21 no hits & (original description: no original description) 0.7765100308437158 92 evm.model.tig00020603.71 no hits & (original description: no original description) 0.7752301230092357 95 evm.model.tig00000042.172 no hits & (original description: no original description) 0.7722070485611403 100