Sequence Description Alias PCC hrr Kfl00108_0130 (q8lpu5|cmt3_maize : 469.0) DNA (cytosine-5)-methyltransferase 3 (EC 2.1.1.37) (Chromomethylase 3) (DNA methyltransferase 105) - Zea mays (Maize) & (at4g19020 : 419.0) chromomethylase 2 (CMT2); FUNCTIONS IN: chromatin binding, DNA binding; INVOLVED IN: chromatin assembly or disassembly, DNA methylation; LOCATED IN: chromatin, nucleus; CONTAINS InterPro DOMAIN/s: DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Chromo domain-like (InterPro:IPR016197), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Chromo domain (InterPro:IPR000953); BEST Arabidopsis thaliana protein match is: chromomethylase 3 (TAIR:AT1G69770.1); Has 5135 Blast hits to 4403 proteins in 1000 species: Archae - 207; Bacteria - 2602; Metazoa - 790; Fungi - 215; Plants - 463; Viruses - 25; Other Eukaryotes - 833 (source: NCBI BLink). & (reliability: 838.0) & (original description: no original description) kfl00108_0130_v1.1 0.9448544107408136 34 Kfl00039_0170 (at2g32590 : 335.0) LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barren (InterPro:IPR008418); Has 467 Blast hits to 447 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 147; Fungi - 168; Plants - 39; Viruses - 1; Other Eukaryotes - 108 (source: NCBI BLink). & (reliability: 670.0) & (original description: no original description) kfl00039_0170_v1.1 0.9433504706826945 26 Kfl00323_0130 (at3g46940 : 221.0) DUTP-PYROPHOSPHATASE-LIKE 1 (DUT1); FUNCTIONS IN: hydrolase activity, dUTP diphosphatase activity; INVOLVED IN: DNA repair, 2'-deoxyribonucleotide metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DeoxyUTP pyrophosphatase domain, subfamily 1, (InterPro:IPR008181), DeoxyUTP pyrophosphatase domain (InterPro:IPR008180); Has 7764 Blast hits to 7750 proteins in 2463 species: Archae - 14; Bacteria - 4311; Metazoa - 248; Fungi - 161; Plants - 56; Viruses - 831; Other Eukaryotes - 2143 (source: NCBI BLink). & (reliability: 442.0) & (original description: no original description) kfl00323_0130_v1.1 0.9416885601733544 39 Kfl00411_0100 (at5g48600 : 1014.0) member of SMC subfamily; structural maintenance of chromosome 3 (SMC3); FUNCTIONS IN: transporter activity, ATP binding; INVOLVED IN: chromosome segregation, chromosome organization; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: structural maintenance of chromosomes 2 (TAIR:AT5G62410.1). & (reliability: 2028.0) & (original description: no original description) kfl00411_0100_v1.1 0.9412596050370585 25 Kfl00141_0070 (at1g66740 : 256.0) Located on the SSL2 region of Arabidopsis thaliana, which is homeologous to the Brassica S locus for self incompatibility. Expressed in both vegetative and reproductive organs suggesting AtSP7 might not be involved in self incompatibility.; SGA2; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: chromatin assembly or disassembly, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone chaperone, ASF1-like (InterPro:IPR006818); BEST Arabidopsis thaliana protein match is: anti- silencing function 1b (TAIR:AT5G38110.1); Has 608 Blast hits to 608 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 247; Fungi - 167; Plants - 75; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink). & (reliability: 512.0) & (original description: no original description) kfl00141_0070_v1.1 0.9398268799125895 30 Kfl00221_0210 no hits & (original description: no original description) kfl00221_0210_v1.1 0.9376022535980676 29 Kfl00209_0100 no hits & (original description: no original description) kfl00209_0100_v1.1 0.9345336660567307 27 Kfl00028_g56 (at2g27960 : 105.0) catalytic subunit of cyclin dependent kinase 1. physically interact with cyclin-dependent kinases (CDKs) and play an essential, but yet not entirely resolved, role in the regulation of the cell cycle; cyclin-dependent kinase-subunit 1 (CKS1); CONTAINS InterPro DOMAIN/s: Cyclin-dependent kinase, regulatory subunit (InterPro:IPR000789); BEST Arabidopsis thaliana protein match is: CDK-subunit 2 (TAIR:AT2G27970.1); Has 657 Blast hits to 657 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 305; Fungi - 139; Plants - 105; Viruses - 0; Other Eukaryotes - 108 (source: NCBI BLink). & (reliability: 210.0) & (original description: no original description) kfl00028_g56_v1.1 0.9292335572271584 28 Kfl00144_0030 (at1g18335 : 168.0) Acyl-CoA N-acyltransferases (NAT) superfamily protein; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 336.0) & (original description: no original description) kfl00144_0030_v1.1 0.9290880462769063 30 Kfl00100_0250 (at1g67320 : 534.0) DNA primase, large subunit family; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, large subunit, eukaryotic (InterPro:IPR016558), DNA primase, large subunit, eukaryotic/archaeal (InterPro:IPR007238). & (reliability: 1068.0) & (original description: no original description) kfl00100_0250_v1.1 0.9284316962450515 55 Kfl00026_0270 no hits & (original description: no original description) kfl00026_0270_v1.1 0.9248173886308266 23 Kfl00765_0030 (at1g34770 : 128.0) CONTAINS InterPro DOMAIN/s: MAGE protein (InterPro:IPR002190); Has 1274 Blast hits to 1260 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 1104; Fungi - 45; Plants - 49; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). & (reliability: 256.0) & (original description: no original description) kfl00765_0030_v1.1 0.9242028672861209 20 Kfl00005_0580 no hits & (original description: no original description) kfl00005_0580_v1.1 0.9228098849595581 41 Kfl00250_0150 (at3g16730 : 121.0) CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex, subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to 211 proteins in 82 species: Archae - 0; Bacteria - 0; Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink). & (reliability: 242.0) & (original description: no original description) kfl00250_0150_v1.1 0.9223421183484456 59 Kfl00257_0120 no hits & (original description: no original description) kfl00257_0120_v1.1 0.9220825673154377 52 Kfl00302_0040 no hits & (original description: no original description) kfl00302_0040_v1.1 0.9217467024766789 46 Kfl00001_0690 (at5g62410 : 1028.0) SMC2-1 (SMC2); structural maintenance of chromosomes 2 (SMC2); FUNCTIONS IN: transporter activity; INVOLVED IN: chromosome organization; LOCATED IN: condensin complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SMCs flexible hinge (InterPro:IPR010935), RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: Structural maintenance of chromosomes (SMC) family protein (TAIR:AT3G47460.1); Has 126046 Blast hits to 65003 proteins in 3391 species: Archae - 1784; Bacteria - 23628; Metazoa - 52968; Fungi - 10094; Plants - 6737; Viruses - 431; Other Eukaryotes - 30404 (source: NCBI BLink). & (reliability: 2056.0) & (original description: no original description) kfl00001_0690_v1.1 0.920316819596263 50 Kfl00024_0350 no hits & (original description: no original description) kfl00024_0350_v1.1 0.919920657118396 35 Kfl00137_0140 no hits & (original description: no original description) kfl00137_0140_v1.1 0.9187902859968364 19 Kfl00561_0040 no hits & (original description: no original description) kfl00561_0040_v1.1 0.9180791560332904 35 Kfl00349_0090 (at3g25100 : 380.0) Required for normal meiosis, may act in the last round of DNA replication prior to meiosis, sequence similar to yeast CDC45; cell division cycle 45 (CDC45); CONTAINS InterPro DOMAIN/s: CDC45-like protein (InterPro:IPR003874); Has 1810 Blast hits to 1657 proteins in 252 species: Archae - 0; Bacteria - 25; Metazoa - 666; Fungi - 449; Plants - 176; Viruses - 35; Other Eukaryotes - 459 (source: NCBI BLink). & (reliability: 760.0) & (original description: no original description) kfl00349_0090_v1.1 0.9168303561729549 65 Kfl00131_0170 no hits & (original description: no original description) kfl00131_0170_v1.1 0.9157350758671123 22 Kfl00031_0310 (at2g05210 : 102.0) Encodes AtPOT1a, an accessory factor for telomerase required for positive telomere length regulation. Note on nomenclature: different names have been given to Arabidopsis POT-like genes (Kuchar and Fajkus, 2004; Shakirov et al, 2005; Tani and Murata, 2005). According to a unifying nomenclature (Surovtseva et al, 2007), At2g05210 (previously named AtPOT1) is designated AtPOT1a, while At5g06310 (previously named AtPOT2) is designated AtPOT1b.; Protection of Telomeres 1a (AtPOT1a); CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Telomere end binding protein (InterPro:IPR011564); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT5G06310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 204.0) & (original description: no original description) kfl00031_0310_v1.1 0.9155492053925488 54 Kfl00281_0130 no hits & (original description: no original description) kfl00281_0130_v1.1 0.9154634786502915 24 Kfl00013_0430 (at1g18090 : 256.0) 5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: XPG conserved site (InterPro:IPR019974), XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: 5'-3' exonuclease family protein (TAIR:AT1G29630.2); Has 2139 Blast hits to 2052 proteins in 399 species: Archae - 267; Bacteria - 71; Metazoa - 522; Fungi - 572; Plants - 187; Viruses - 16; Other Eukaryotes - 504 (source: NCBI BLink). & (reliability: 512.0) & (original description: no original description) kfl00013_0430_v1.1 0.9151967852192643 66 Kfl00381_0040 (at1g10930 : 306.0) DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination.; RECQ4A; FUNCTIONS IN: helicase activity, ATP-dependent 3'-5' DNA helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: chromosome organization, response to DNA damage stimulus, double-strand break repair via homologous recombination; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RQC domain (InterPro:IPR018982), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Helicase/RNase D C-terminal, HRDC domain (InterPro:IPR002121); BEST Arabidopsis thaliana protein match is: RECQ helicase L4B (TAIR:AT1G60930.1); Has 34923 Blast hits to 34782 proteins in 2821 species: Archae - 633; Bacteria - 21324; Metazoa - 3687; Fungi - 2728; Plants - 1606; Viruses - 18; Other Eukaryotes - 4927 (source: NCBI BLink). & (reliability: 612.0) & (original description: no original description) kfl00381_0040_v1.1, kfl00381_0040_v1.1 0.9151289525222194 49 Kfl00147_0040 (at3g02820 : 124.0) zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: cell cycle, replication fork protection, response to DNA damage stimulus; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Replication fork protection component Swi3 (InterPro:IPR012923), Zinc finger, CCHC-type (InterPro:IPR001878); Has 415 Blast hits to 415 proteins in 134 species: Archae - 0; Bacteria - 4; Metazoa - 156; Fungi - 94; Plants - 93; Viruses - 28; Other Eukaryotes - 40 (source: NCBI BLink). & (reliability: 248.0) & (original description: no original description) kfl00147_0040_v1.1 0.9144941715473447 27 Kfl00181_0220 (at4g08990 : 1038.0) DNA (cytosine-5-)-methyltransferase family protein; FUNCTIONS IN: DNA binding, DNA (cytosine-5-)-methyltransferase activity; INVOLVED IN: DNA methylation; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: DNA (cytosine-5)-methyltransferase 1 (InterPro:IPR017198), DNA methylase, C-5 cytosine-specific (InterPro:IPR001525), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), DNA methylase, C-5 cytosine-specific, active site (InterPro:IPR018117); BEST Arabidopsis thaliana protein match is: DNA methyltransferase 2 (TAIR:AT4G14140.1); Has 7214 Blast hits to 6137 proteins in 1440 species: Archae - 249; Bacteria - 4362; Metazoa - 525; Fungi - 274; Plants - 335; Viruses - 111; Other Eukaryotes - 1358 (source: NCBI BLink). & (q9axt8|cmt1_maize : 184.0) DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (Chromomethylase 1) (Zea methyltransferase2) (Zmet2) (DNA cytosine methyltransferase MET2a) - Zea mays (Maize) & (reliability: 2076.0) & (original description: no original description) kfl00181_0220_v1.1 0.9141400632075114 66 Kfl00057_0090 (at2g22140 : 132.0) Forms a complex with MUS81 that functions as endonuclease in DNA recombination and repair processes.; essential meiotic endonuclease 1B (EME1B); CONTAINS InterPro DOMAIN/s: ERCC4 domain (InterPro:IPR006166); BEST Arabidopsis thaliana protein match is: essential meiotic endonuclease 1A (TAIR:AT2G21800.1); Has 542 Blast hits to 486 proteins in 142 species: Archae - 0; Bacteria - 42; Metazoa - 170; Fungi - 104; Plants - 48; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). & (reliability: 264.0) & (original description: no original description) kfl00057_0090_v1.1 0.9136038388043217 29 Kfl00222_0100 (at5g37630 : 265.0) EMBRYO DEFECTIVE 2656 (EMB2656); FUNCTIONS IN: binding; INVOLVED IN: mitotic chromosome condensation, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 333 Blast hits to 316 proteins in 147 species: Archae - 0; Bacteria - 4; Metazoa - 113; Fungi - 138; Plants - 47; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink). & (reliability: 530.0) & (original description: no original description) kfl00222_0100_v1.1 0.9124899401671271 46 Kfl00759_0050 no hits & (original description: no original description) kfl00759_0050_v1.1 0.9113746535670003 31 Kfl00208_0200 (at3g48540 : 256.0) Cytidine/deoxycytidylate deaminase family protein; FUNCTIONS IN: hydrolase activity, zinc ion binding, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine deaminase (InterPro:IPR015517); Has 3737 Blast hits to 3733 proteins in 1421 species: Archae - 65; Bacteria - 2323; Metazoa - 218; Fungi - 134; Plants - 52; Viruses - 89; Other Eukaryotes - 856 (source: NCBI BLink). & (reliability: 512.0) & (original description: no original description) kfl00208_0200_v1.1 0.91096152787377 38 Kfl00029_0090 no hits & (original description: no original description) kfl00029_0090_v1.1 0.9100574025811513 51 Kfl00418_0100 no hits & (original description: no original description) kfl00418_0100_v1.1 0.9098757939498145 54 Kfl00038_0385 no hits & (original description: no original description) kfl00038_0385_v1.1 0.9097429756873388 35 Kfl00348_0110 (at2g39440 : 108.0) CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit C (InterPro:IPR013924); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description) kfl00348_0110_v1.1 0.9084145346691482 47 Kfl00113_0300 (at4g29170 : 166.0) A homolog of yeast, mouse and human mnd1delta protein. Null mutants exhibit normal vegetative and flower development; however, during prophase I, chromosomes become fragmented resulting in random distribution of the fragments between polyads. Both male and female meiosis are defective and strong accumulation of AtRAD51 was observed in the inflorescence nuclei of mutant plants. Similarly to its yeast and animal homologues, AtMnd1 might play a role in DSB repair during meiosis.; ATMND1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: double-strand break repair, embryo sac development, response to ionizing radiation, pollen development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Meiotic nuclear division protein 1 (InterPro:IPR005647); Has 323 Blast hits to 323 proteins in 161 species: Archae - 0; Bacteria - 2; Metazoa - 88; Fungi - 122; Plants - 42; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink). & (reliability: 332.0) & (original description: no original description) kfl00113_0300_v1.1 0.9081673008955093 48 Kfl00200_0040 (at5g22750 : 253.0) DNA repair gene. gamma-radiation hypersensitive (RAD5) involved in stable transformation and T-DNA transfer; RAD5; FUNCTIONS IN: in 6 functions; INVOLVED IN: DNA mediated transformation; EXPRESSED IN: embryo, sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: Helicase protein with RING/U-box domain (TAIR:AT5G43530.1); Has 27107 Blast hits to 18179 proteins in 1771 species: Archae - 108; Bacteria - 7266; Metazoa - 8140; Fungi - 5089; Plants - 2446; Viruses - 173; Other Eukaryotes - 3885 (source: NCBI BLink). & (reliability: 468.0) & (original description: no original description) kfl00200_0040_v1.1, kfl00200_0040_v1.1 0.908052234631686 38 Kfl00582_g4 no hits & (original description: no original description) kfl00582_g4_v1.1 0.9076545384772403 73 Kfl00110_0030 (at3g27640 : 283.0) Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 36714 Blast hits to 22017 proteins in 645 species: Archae - 42; Bacteria - 5151; Metazoa - 14249; Fungi - 8186; Plants - 4562; Viruses - 0; Other Eukaryotes - 4524 (source: NCBI BLink). & (reliability: 566.0) & (original description: no original description) kfl00110_0030_v1.1 0.9069192542583213 62 Kfl00202_0040 no hits & (original description: no original description) kfl00202_0040_v1.1 0.9064128161103102 55 Kfl00365_0030 no hits & (original description: no original description) kfl00365_0030_v1.1 0.9055073970559071 42 Kfl00116_0090 (at1g04020 : 184.0) Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent proteinñprotein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.; breast cancer associated RING 1 (BARD1); FUNCTIONS IN: transcription coactivator activity, DNA binding; INVOLVED IN: DNA repair, regulation of meristem structural organization, leaf development; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 (TAIR:AT4G21070.1); Has 6045 Blast hits to 5706 proteins in 320 species: Archae - 0; Bacteria - 47; Metazoa - 4577; Fungi - 362; Plants - 542; Viruses - 11; Other Eukaryotes - 506 (source: NCBI BLink). & (reliability: 354.0) & (original description: no original description) kfl00116_0090_v1.1, kfl00116_0090_v1.1 0.9053358872095618 65 Kfl00334_0010 (at2g25100 : 313.0) Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease H activity, RNA binding, catalytic activity, nucleic acid binding; INVOLVED IN: RNA metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit A (InterPro:IPR004649), Ribonuclease HII/HIII (InterPro:IPR001352), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); Has 6305 Blast hits to 6298 proteins in 2456 species: Archae - 256; Bacteria - 4469; Metazoa - 152; Fungi - 137; Plants - 56; Viruses - 3; Other Eukaryotes - 1232 (source: NCBI BLink). & (reliability: 626.0) & (original description: no original description) kfl00334_0010_v1.1 0.9052485272219692 44 Kfl00112_0010 (at1g64960 : 375.0) ARM repeat superfamily protein; FUNCTIONS IN: binding; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 750.0) & (original description: no original description) kfl00112_0010_v1.1 0.9046746589527107 45 Kfl00044_0340 no hits & (original description: no original description) kfl00044_0340_v1.1 0.9038012459758014 70 Kfl00539_0100 no hits & (original description: no original description) kfl00539_0100_v1.1 0.9036049575230019 47 Kfl00736_0030 no hits & (original description: no original description) kfl00736_0030_v1.1 0.9030353280021722 48 Kfl00161_0190 (at4g18590 : 93.6) Nucleic acid-binding, OB-fold-like protein; CONTAINS InterPro DOMAIN/s: Replication factor A protein 3 (InterPro:IPR013970), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT3G52630.2); Has 94 Blast hits to 94 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 2; Plants - 56; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). & (reliability: 187.2) & (original description: no original description) kfl00161_0190_v1.1 0.9020852839286974 49 Kfl00020_0220 (at3g54750 : 196.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. & (reliability: 392.0) & (original description: no original description) kfl00020_0220_v1.1 0.9016390786867866 50 Kfl00489_0040 (at2g21790 : 1267.0) encodes large subunit of ribonucleotide reductase involved in the production of deoxyribonucleoside triphosphates (dNTPs) for DNA replication and repair; ribonucleotide reductase 1 (RNR1); FUNCTIONS IN: ribonucleoside-diphosphate reductase activity, ATP binding; INVOLVED IN: response to cadmium ion, DNA replication, deoxyribonucleoside triphosphate biosynthetic process; LOCATED IN: ribonucleoside-diphosphate reductase complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonucleotide reductase large subunit, N-terminal (InterPro:IPR013509), Ribonucleoside-diphosphate reductase, alpha subunit (InterPro:IPR013346), ATP-cone (InterPro:IPR005144), Ribonucleotide reductase large subunit, C-terminal (InterPro:IPR000788), Ribonucleotide reductase R1 subunit, N-terminal (InterPro:IPR008926); Has 15326 Blast hits to 14804 proteins in 2790 species: Archae - 206; Bacteria - 6388; Metazoa - 177; Fungi - 215; Plants - 88; Viruses - 606; Other Eukaryotes - 7646 (source: NCBI BLink). & (reliability: 2534.0) & (original description: no original description) kfl00489_0040_v1.1 0.9002774635778671 71 Kfl00014_0390 (at4g20325 : 186.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 372.0) & (original description: no original description) kfl00014_0390_v1.1 0.8990753363974647 67 Kfl00717_0030 no hits & (original description: no original description) kfl00717_0030_v1.1 0.8981853903778638 53 Kfl00258_0040 (at4g15890 : 412.0) binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chromosome condensation protein, HCP-6-related (InterPro:IPR012371), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT3G57060.1); Has 443 Blast hits to 428 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 188; Fungi - 128; Plants - 61; Viruses - 3; Other Eukaryotes - 63 (source: NCBI BLink). & (reliability: 824.0) & (original description: no original description) kfl00258_0040_v1.1 0.8978288653121581 64 Kfl00066_0260 (at5g15920 : 686.0) Encodes SMC5 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 5), a component of the SMC5/6 complex. SMC5/6 complex promotes sister chromatid alignment and homologous recombination after DNA damage.; structural maintenance of chromosomes 5 (SMC5); FUNCTIONS IN: ATP binding; INVOLVED IN: sister chromatid cohesion, chromosome segregation; LOCATED IN: chromosome, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RecF/RecN/SMC protein, N-terminal (InterPro:IPR003395); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G61460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1372.0) & (original description: no original description) kfl00066_0260_v1.1 0.8972897755307567 59 Kfl00394_0110 (at2g20980 : 139.0) Similar to MCM10, which in other organism was shown to be involved in the initiation of DNA replication.; minichromosome maintenance 10 (MCM10); CONTAINS InterPro DOMAIN/s: Zinc finger, Mcm10/DnaG-type (InterPro:IPR015408); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 278.0) & (original description: no original description) kfl00394_0110_v1.1 0.8953904040911157 66 Kfl00102_0020 (at1g74150 : 104.0) Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Kelch repeat type 1 (InterPro:IPR006652), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 2 (InterPro:IPR011498), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT1G18610.1); Has 11763 Blast hits to 5823 proteins in 445 species: Archae - 10; Bacteria - 555; Metazoa - 4461; Fungi - 1268; Plants - 2654; Viruses - 19; Other Eukaryotes - 2796 (source: NCBI BLink). & (reliability: 208.0) & (original description: no original description) kfl00102_0020_v1.1 0.8946491460887321 60 Kfl00692_0040 no hits & (original description: no original description) kfl00692_0040_v1.1 0.8945286096761635 76 Kfl00289_0170 no hits & (original description: no original description) kfl00289_0170_v1.1 0.8941894069752715 59 Kfl00017_0130 no hits & (original description: no original description) kfl00017_0130_v1.1 0.8937286514809138 76 Kfl00231_0010 no hits & (original description: no original description) kfl00231_0010_v1.1 0.8934347417035727 61 Kfl00358_0060 (at3g52950 : 407.0) CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Cystathionine beta-synthase, core (InterPro:IPR000644); BEST Arabidopsis thaliana protein match is: CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (TAIR:AT2G36500.1). & (reliability: 814.0) & (original description: no original description) kfl00358_0060_v1.1 0.8923845732832055 62 Kfl00759_0040 no hits & (original description: no original description) kfl00759_0040_v1.1 0.8918882380070909 63 Kfl00208_0210 no hits & (original description: no original description) kfl00208_0210_v1.1 0.8918876716937029 72 Kfl00580_0060 no hits & (original description: no original description) kfl00580_0060_v1.1 0.8916111742781953 73 Kfl00072_0060 (at1g57820 : 631.0) Encodes a 645-amino acid methylcytosine-binding protein with a PHD domain, two RING finger domains, and an SRA domain that is involved in centromere heterochromatinization. This protein functions as an E3 ubiquitin ligase in vitro. The protein has been shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the former. It plays a role in the establishment/maintenance of chromatin structure during cell division and is localized in the nucleus. Plants over-expressing VIM1/ORTH2 show an inhibition in root growth and a delay in flowering. Both over-expression of GFP:ORTH2 and loss of ORTH2/VIM1 lead to decreased levels of DNA methylation. GFP:ORTH2 over-expressers also have increased levels of FWA transcripts.; VARIANT IN METHYLATION 1 (VIM1); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SRA-YDG (InterPro:IPR003105), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G57800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1262.0) & (original description: no original description) kfl00072_0060_v1.1, kfl00072_0060_v1.1 0.8913831010798879 83 Kfl00040_0260 (at2g45490 : 181.0) Encodes a member of a family of Ser/Thr kinases whose activities peak during cell division. Transcripts are abundant in tissues rich in dividing cells like roots and flowers but are low or absent in fully expanded leaves and stems. In interphase cells, the protein is predominantly nuclear. During mitosis, the protein associates with plant-specific cytoskeletal structures (preprophase band, phragmoplast, nascent cell plate) that are necessary for cytokinesis as well as with the microtubule spindle. The protein is concentrated in nuclear dots arranged around the nucleolus and the nuclear periphery in early prophase cells.; ataurora3 (AUR3); CONTAINS InterPro DOMAIN/s: Spindle assembly checkpoint kinase (InterPro:IPR020663), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: ataurora1 (TAIR:AT4G32830.1); Has 132422 Blast hits to 130217 proteins in 4585 species: Archae - 167; Bacteria - 15261; Metazoa - 49222; Fungi - 13102; Plants - 32389; Viruses - 552; Other Eukaryotes - 21729 (source: NCBI BLink). & (q6x4a2|cipk1_orysa : 166.0) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1) - Oryza sativa (Rice) & (reliability: 342.0) & (original description: no original description) kfl00040_0260_v1.1, kfl00040_0260_v1.1, kfl00040_0260_v1.1 0.8913428295660834 67 Kfl00004_0070 (at3g19180 : 127.0) Encodes a chloroplast division factor located in the plastid inner envelope with its N-terminus exposed to the stroma. PARC6 influences FtsZ assembly and is required for recruitment of PDV1 during chloroplast division.; paralog of ARC6 (PARC6); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT5G42480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 254.0) & (original description: no original description) kfl00004_0070_v1.1 0.8895382754344927 68 Kfl00039_0290 (at3g19210 : 410.0) Encodes RAD54, a member of the SWI2/SNF2 family of DNA-stimulated ATPases. Functions in DNA repair via homologous recombination.; homolog of RAD54 (RAD54); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: DNA repair, response to gamma radiation, double-strand break repair via homologous recombination; LOCATED IN: cellular_component unknown; EXPRESSED IN: style (sensu Poaceae), hydathode, root, petiole; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: switch 2 (TAIR:AT1G03750.1). & (q7g8y3|isw2_orysa : 187.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (reliability: 820.0) & (original description: no original description) kfl00039_0290_v1.1 0.8887701617950298 69 Kfl00055_0170 (at3g57060 : 412.0) binding; FUNCTIONS IN: binding; INVOLVED IN: mitosis, chromosome condensation; LOCATED IN: nucleus, condensin complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Non-SMC condensin subunit, XCAP-D2/Cnd1 (InterPro:IPR007673), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: binding (TAIR:AT4G15890.1). & (reliability: 824.0) & (original description: no original description) kfl00055_0170_v1.1 0.8883495732525559 80 Kfl00110_0200 no hits & (original description: no original description) kfl00110_0200_v1.1 0.887420880113219 71 Kfl00135_0100 (at5g41880 : 457.0) POLA3; FUNCTIONS IN: DNA primase activity; INVOLVED IN: DNA replication, synthesis of RNA primer, DNA replication; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA primase, small subunit (InterPro:IPR002755), DNA primase, small subunit, eukaryotic/archaeal (InterPro:IPR014052); Has 510 Blast hits to 504 proteins in 249 species: Archae - 95; Bacteria - 0; Metazoa - 124; Fungi - 138; Plants - 44; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink). & (reliability: 914.0) & (original description: no original description) kfl00135_0100_v1.1 0.8871379520759679 80 Kfl00075_0310 (p22177|pcna_soybn : 320.0) Proliferating cell nuclear antigen (PCNA) (Cyclin) (Fragment) - Glycine max (Soybean) & (at2g29570 : 314.0) Functionally interacts with POLH to repair DNA damaged by UVB damage.; proliferating cell nuclear antigen 2 (PCNA2); FUNCTIONS IN: DNA binding, DNA polymerase processivity factor activity; INVOLVED IN: regulation of DNA replication, error-prone translesion synthesis; LOCATED IN: PCNA complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proliferating cell nuclear antigen, PCNA (InterPro:IPR000730), Proliferating cell nuclear antigen, PCNA, C-terminal (InterPro:IPR022649), Proliferating cell nuclear antigen, PCNA, conserved site (InterPro:IPR022659), Proliferating cell nuclear antigen, PCNA, N-terminal (InterPro:IPR022648); BEST Arabidopsis thaliana protein match is: proliferating cellular nuclear antigen 1 (TAIR:AT1G07370.1); Has 1860 Blast hits to 1848 proteins in 457 species: Archae - 391; Bacteria - 0; Metazoa - 314; Fungi - 169; Plants - 159; Viruses - 73; Other Eukaryotes - 754 (source: NCBI BLink). & (reliability: 628.0) & (original description: no original description) kfl00075_0310_v1.1 0.8866458780295583 73 Kfl00575_0070 (at3g05420 : 141.0) Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.; acyl-CoA binding protein 4 (ACBP4); FUNCTIONS IN: acyl-CoA binding; INVOLVED IN: lipid transport; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 2 (InterPro:IPR011498), Acyl-CoA-binding protein, ACBP (InterPro:IPR000582), Kelch-type beta propeller (InterPro:IPR015915), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352); BEST Arabidopsis thaliana protein match is: acyl-CoA binding protein 5 (TAIR:AT5G27630.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q39610|dyha_chlre : 92.0) Dynein alpha chain, flagellar outer arm (DHC alpha) - Chlamydomonas reinhardtii & (reliability: 282.0) & (original description: no original description) kfl00575_0070_v1.1 0.8842764513543299 74 Kfl00117_0160 no hits & (original description: no original description) kfl00117_0160_v1.1 0.8838562720664302 75 Kfl00058_g44 no hits & (original description: no original description) kfl00058_g44_v1.1 0.8836024540287257 76 Kfl00007_0070 (at1g59600 : 87.0) ZCW7; Has 136 Blast hits to 136 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 101; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 174.0) & (original description: no original description) kfl00007_0070_v1.1 0.8828298300733053 77 Kfl00066_0340 (at3g42660 : 451.0) transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40 repeat-like-containing domain (InterPro:IPR011046), Protein of unknown function DUF3639 (InterPro:IPR022100), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G23430.1); Has 41589 Blast hits to 20655 proteins in 706 species: Archae - 66; Bacteria - 8583; Metazoa - 14223; Fungi - 8894; Plants - 4578; Viruses - 3; Other Eukaryotes - 5242 (source: NCBI BLink). & (reliability: 902.0) & (original description: no original description) kfl00066_0340_v1.1 0.881686528048387 80 Kfl00234_0120 no hits & (original description: no original description) kfl00234_0120_v1.1 0.8806547629640349 80 Kfl00304_0110 no hits & (original description: no original description) kfl00304_0110_v1.1 0.8798441909631308 83 Kfl00142_0080 (q7g8y3|isw2_orysa : 220.0) Probable chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) - Oryza sativa (Rice) & (at3g06400 : 218.0) Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature.; chromatin-remodeling protein 11 (CHR11); FUNCTIONS IN: in 7 functions; INVOLVED IN: cell growth, embryo sac development; LOCATED IN: nucleus, chromatin remodeling complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, nucleosome remodelling ISWI, HAND domain (InterPro:IPR015194), SANT, eukarya (InterPro:IPR017884), SNF2-related (InterPro:IPR000330), SANT, DNA-binding (InterPro:IPR001005), SLIDE (InterPro:IPR015195), Homeodomain-like (InterPro:IPR009057), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: chromatin remodeling factor17 (TAIR:AT5G18620.2). & (reliability: 410.0) & (original description: no original description) kfl00142_0080_v1.1, kfl00142_0080_v1.1, kfl00142_0080_v1.1 0.8789104033636483 82 Kfl00185_0250 no hits & (original description: no original description) kfl00185_0250_v1.1 0.8786825457472975 83 Kfl00376_0030 (at5g23550 : 134.0) Got1/Sft2-like vescicle transport protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: vesicle-mediated transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vesicle transport protein, Got1/SFT2-like (InterPro:IPR007305), Vesicle transport protein, SFT2-like (InterPro:IPR011691); BEST Arabidopsis thaliana protein match is: Got1/Sft2-like vescicle transport protein family (TAIR:AT5G24170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 268.0) & (original description: no original description) kfl00376_0030_v1.1 0.8784552183524958 84 Kfl00274_0090 no hits & (original description: no original description) kfl00274_0090_v1.1 0.878416368818332 86 Kfl00733_0030 no hits & (original description: no original description) kfl00733_0030_v1.1 0.8782965152187768 86 Kfl00392_0050 no hits & (original description: no original description) kfl00392_0050_v1.1 0.8779763443278256 87 Kfl00109_0210 (at5g64630 : 397.0) Chromatin Assembly Factor-1 (CAF-1) p60 subunit. Involved in organization of the shoot and root apical meristems. In Arabidopsis, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. Mutations in FAS1 or FAS2 lead to increased frequency of homologous recombination and T-DNA integration in Arabidopsis.; FASCIATA 2 (FAS2); CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of histone chaperone HIRA (TAIR:AT3G44530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (p93107|pf20_chlre : 84.0) Flagellar WD repeat protein PF20 - Chlamydomonas reinhardtii & (reliability: 794.0) & (original description: no original description) kfl00109_0210_v1.1 0.8774134347394366 88 Kfl00240_0060 no hits & (original description: no original description) kfl00240_0060_v1.1 0.8768603712999448 89 Kfl00330_0070 (o23787|thi4_citsi : 475.0) Thiazole biosynthetic enzyme, chloroplast precursor - Citrus sinensis (Sweet orange) & (at5g54770 : 471.0) Encodes a thiamine biosynthetic gene that has a dual function in thiamine biosynthesis and mitochondrial DNA damage tolerance. It appears to be involved in producing the thiazole portion of thiamine (vitamin B1). A crystal structure of the protein reveals that it forms a 2-ring homo-octamer.; THI1; FUNCTIONS IN: protein homodimerization activity, zinc ion binding; INVOLVED IN: oxazole or thiazole biosynthetic process, response to cold, thiamin biosynthetic process, response to DNA damage stimulus; LOCATED IN: in 6 components; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thiamine biosynthesis Thi4 protein (InterPro:IPR002922); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 942.0) & (original description: no original description) kfl00330_0070_v1.1 0.8765775780700781 90 Kfl00173_0090 no hits & (original description: no original description) kfl00173_0090_v1.1 0.8764313908987046 91 Kfl00244_0090 (p55857|smt3_orysa : 150.0) Ubiquitin-like protein SMT3 - Oryza sativa (Rice) & (at4g26840 : 149.0) Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets.; small ubiquitin-like modifier 1 (SUMO1); CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: small ubiquitin-like modifier 2 (TAIR:AT5G55160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 298.0) & (original description: no original description) kfl00244_0090_v1.1 0.8758488523124528 92 Kfl00814_0010 (at3g54630 : 135.0) CONTAINS InterPro DOMAIN/s: Kinetochore protein Ndc80 (InterPro:IPR005550); Has 24780 Blast hits to 15608 proteins in 1321 species: Archae - 545; Bacteria - 2969; Metazoa - 12597; Fungi - 2181; Plants - 1581; Viruses - 39; Other Eukaryotes - 4868 (source: NCBI BLink). & (reliability: 270.0) & (original description: no original description) kfl00814_0010_v1.1 0.8757820615733046 93 Kfl00203_0160 (at1g10930 : 726.0) DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination.; RECQ4A; FUNCTIONS IN: helicase activity, ATP-dependent 3'-5' DNA helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding; INVOLVED IN: chromosome organization, response to DNA damage stimulus, double-strand break repair via homologous recombination; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RQC domain (InterPro:IPR018982), DNA helicase, ATP-dependent, RecQ type (InterPro:IPR004589), DNA helicase, ATP-dependent, RecQ type, N-terminal (InterPro:IPR018329), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), Helicase/RNase D C-terminal, HRDC domain (InterPro:IPR002121); BEST Arabidopsis thaliana protein match is: RECQ helicase L4B (TAIR:AT1G60930.1); Has 34923 Blast hits to 34782 proteins in 2821 species: Archae - 633; Bacteria - 21324; Metazoa - 3687; Fungi - 2728; Plants - 1606; Viruses - 18; Other Eukaryotes - 4927 (source: NCBI BLink). & (reliability: 1452.0) & (original description: no original description) kfl00203_0160_v1.1, kfl00203_0160_v1.1 0.8748222553692703 94 Kfl00327_0060 (at4g32700 : 819.0) Encodes a homolog of Drosophila MUS308 and mammalian DNA polymerase, which prevent spontaneous or DNA damage-induced production of DNA double strand breaks. Two conserved functional domains: an N-terminal superfamily II DNA/RNA helicase domain and a C-terminal prokaryotic-type DNA polymerase I domain. Required for regulated cell division and differentiation in meristems. Mutant plants show morphological defects, such as short roots, serrated leaves, and fasciation, as well as defective patterns of cell division and differentiation in the meristem. Mutant plants had 2.5 to 4.5-fold higher expression of ATGR1, ATBRCA1 and RAD51 genes. TEB is required for normal progression of DNA replication and for correct expression of genes during development.; helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding; FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of gene expression, DNA replication, DNA recombination, photomorphogenesis; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA-directed DNA polymerase, family A, palm domain (InterPro:IPR001098), DNA/RNA helicase, C-terminal (InterPro:IPR001650), DNA polymerase A domain (InterPro:IPR002298), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT2G42270.1); Has 17628 Blast hits to 16579 proteins in 2941 species: Archae - 600; Bacteria - 7507; Metazoa - 1254; Fungi - 1190; Plants - 590; Viruses - 412; Other Eukaryotes - 6075 (source: NCBI BLink). & (reliability: 1638.0) & (original description: no original description) kfl00327_0060_v1.1 0.8747061513486415 95 Kfl00051_0030 no hits & (original description: no original description) kfl00051_0030_v1.1 0.8742187612568516 96 Kfl00290_0040 (at4g15475 : 145.0) F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: EIN3-binding F box protein 2 (TAIR:AT5G25350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 290.0) & (original description: no original description) kfl00290_0040_v1.1 0.8736573620757859 97 Kfl00260_0080 no hits & (original description: no original description) kfl00260_0080_v1.1 0.8733182173171778 98 Kfl00053_0050 (p08437|h3_volca : 147.0) Histone H3 - Volvox carteri & (at5g10980 : 146.0) Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 292.0) & (original description: no original description) kfl00053_0050_v1.1 0.8726365144028961 99 Kfl00079_0180 (at4g34620 : 85.5) Encodes ribosomal protein S16, has embryo-defective lethal mutant phenotype; small subunit ribosomal protein 16 (SSR16); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis, embryo development ending in seed dormancy; LOCATED IN: ribosome, chloroplast, plastid, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S16 (InterPro:IPR000307); BEST Arabidopsis thaliana protein match is: Ribosomal protein S16 family protein (TAIR:AT5G56940.1); Has 8683 Blast hits to 8683 proteins in 3031 species: Archae - 0; Bacteria - 5404; Metazoa - 128; Fungi - 129; Plants - 717; Viruses - 0; Other Eukaryotes - 2305 (source: NCBI BLink). & (reliability: 171.0) & (original description: no original description) kfl00079_0180_v1.1 0.8719865768839866 100