Sequence Description Alias PCC hrr Kfl00027_0100 (at5g41790 : 86.3) encodes a protein that physically interacts specifically with the putative coiled-coil region of COP1 in vitro. In hypocotyl and cotyledon protoplasts, it is associated to the cytoskeleton, but not in the root. expression is not regulated by light.; COP1-interactive protein 1 (CIP1); FUNCTIONS IN: protein binding; INVOLVED IN: regulation of protein import into nucleus; LOCATED IN: cytoskeleton, plasma membrane, chloroplast, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT1G64330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 172.6) & (original description: no original description) kfl00027_0100_v1.1, kfl00027_0100_v1.1 0.9198822006670455 2 Kfl00398_0120 (at3g52210 : 179.0) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: mRNA capping; LOCATED IN: cellular_component unknown; EXPRESSED IN: synergid; CONTAINS InterPro DOMAIN/s: mRNA capping enzyme, large subunit (InterPro:IPR004971); BEST Arabidopsis thaliana protein match is: mRNA capping enzyme family protein (TAIR:AT3G20650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (q6k833|mces2_orysa : 164.0) mRNA cap guanine-N7 methyltransferase 2 (EC 2.1.1.56) (mRNA (guanine-N(7)-)-methyltransferase 2) (mRNA cap methyltransferase 2) - Oryza sativa (Rice) & (reliability: 358.0) & (original description: no original description) kfl00398_0120_v1.1 0.9134048604533718 6 Kfl00193_0080 (at1g67230 : 101.0) Encodes a nuclear coiled-coil protein related to the carrot peripheral nuclear protein NMCP1 that is involved in the determination of plant nuclear structure.; LITTLE NUCLEI1 (LINC1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nucleus organization; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nuclear matrix constituent protein-related (TAIR:AT1G13220.2); Has 314297 Blast hits to 138342 proteins in 3965 species: Archae - 3454; Bacteria - 70538; Metazoa - 123746; Fungi - 25476; Plants - 17143; Viruses - 1173; Other Eukaryotes - 72767 (source: NCBI BLink). & (reliability: 202.0) & (original description: no original description) kfl00193_0080_v1.1 0.9038625324462217 5 Kfl00250_0040 (at4g15570 : 192.0) Similar to yeast Sen1 (splicing endonuclease 1)helicase protein. Involved in female gametophyte development.; MAGATAMA 3 (MAA3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen-pistil interaction, pollen tube guidance, embryo sac development; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G16800.1); Has 6636 Blast hits to 6003 proteins in 1303 species: Archae - 237; Bacteria - 1922; Metazoa - 1300; Fungi - 1113; Plants - 639; Viruses - 442; Other Eukaryotes - 983 (source: NCBI BLink). & (reliability: 384.0) & (original description: no original description) kfl00250_0040_v1.1 0.8965420710112748 12 Kfl00067_0030 (at5g42400 : 213.0) Encodes ATXR7 (ARABIDOPSIS TRITHORAX-RELATED7), required for histone H3-K4 methylation and for transcriptional activation of Flowering Locus C.; SET domain protein 25 (SDG25); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), GYF (InterPro:IPR003169); BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1); Has 5838 Blast hits to 5683 proteins in 501 species: Archae - 3; Bacteria - 461; Metazoa - 2434; Fungi - 507; Plants - 1016; Viruses - 2; Other Eukaryotes - 1415 (source: NCBI BLink). & (q8s4p6|ez1_maize : 89.7) Polycomb protein EZ1 (Enhancer of zeste protein 1) - Zea mays (Maize) & (reliability: 426.0) & (original description: no original description) kfl00067_0030_v1.1 0.89579079451974 15 Kfl00037_0230 (at2g33730 : 806.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G28180.1); Has 125674 Blast hits to 72393 proteins in 3317 species: Archae - 1039; Bacteria - 55089; Metazoa - 31149; Fungi - 11223; Plants - 5926; Viruses - 327; Other Eukaryotes - 20921 (source: NCBI BLink). & (p46942|db10_nicsy : 283.0) ATP-dependent RNA helicase-like protein DB10 (EC 3.6.1.-) - Nicotiana sylvestris (Wood tobacco) & (reliability: 1612.0) & (original description: no original description) kfl00037_0230_v1.1 0.8938425544030161 16 Kfl00181_0170 no hits & (original description: no original description) kfl00181_0170_v1.1 0.8871956225880925 7 Kfl00555_0030 no hits & (original description: no original description) kfl00555_0030_v1.1 0.8852787369784836 33 Kfl00705_0025 no hits & (original description: no original description) kfl00705_0025_v1.1 0.8848012668222265 13 Kfl00359_0140 no hits & (original description: no original description) kfl00359_0140_v1.1 0.8706168751783613 26 Kfl00282_0100 (at3g16260 : 123.0) Encodes a tRNase Z.; tRNAse Z4 (TRZ4); FUNCTIONS IN: 3'-tRNA processing endoribonuclease activity, catalytic activity; INVOLVED IN: tRNA 3'-end processing, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease Z (InterPro:IPR013471); BEST Arabidopsis thaliana protein match is: tRNAse Z3 (TAIR:AT1G52160.1); Has 6299 Blast hits to 4396 proteins in 1654 species: Archae - 442; Bacteria - 4351; Metazoa - 254; Fungi - 243; Plants - 108; Viruses - 0; Other Eukaryotes - 901 (source: NCBI BLink). & (reliability: 246.0) & (original description: no original description) kfl00282_0100_v1.1 0.870417212196855 11 Kfl00018_0560 no hits & (original description: no original description) kfl00018_0560_v1.1 0.8694435069933494 20 Kfl00081_0240 (at5g24350 : 230.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244). & (reliability: 460.0) & (original description: no original description) kfl00081_0240_v1.1 0.8594961002110698 13 Kfl00212_0140 (at2g23740 : 130.0) nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: chromatin modification; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), SET domain (InterPro:IPR001214), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 5 (TAIR:AT2G35160.1). & (reliability: 260.0) & (original description: no original description) kfl00212_0140_v1.1 0.859066486675088 16 Kfl00012_0230 no hits & (original description: no original description) kfl00012_0230_v1.1 0.8585778443213572 29 Kfl00284_0020 (at3g21480 : 127.0) BRCT domain-containing DNA repair protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: BRCT domain-containing DNA repair protein (TAIR:AT4G03130.1); Has 730 Blast hits to 680 proteins in 204 species: Archae - 4; Bacteria - 146; Metazoa - 309; Fungi - 49; Plants - 100; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink). & (reliability: 254.0) & (original description: no original description) kfl00284_0020_v1.1 0.8569958869862996 46 Kfl00026_0110 no hits & (original description: no original description) kfl00026_0110_v1.1 0.8528623506277476 17 Kfl00374_0105 no hits & (original description: no original description) kfl00374_0105_v1.1 0.8525536341520481 18 Kfl00692_0060 no hits & (original description: no original description) kfl00692_0060_v1.1 0.8496314959452942 24 Kfl00154_0100 (at1g04860 : 134.0) Encodes a ubiquitin-specific protease.; ubiquitin-specific protease 2 (UBP2); FUNCTIONS IN: ubiquitin-specific protease activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome complex, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 1 (TAIR:AT2G32780.1); Has 10400 Blast hits to 6714 proteins in 274 species: Archae - 0; Bacteria - 50; Metazoa - 5279; Fungi - 1927; Plants - 1459; Viruses - 5; Other Eukaryotes - 1680 (source: NCBI BLink). & (reliability: 268.0) & (original description: no original description) kfl00154_0100_v1.1 0.8487808021098052 39 Kfl00032_0200 (at5g25070 : 84.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 168.0) & (original description: no original description) kfl00032_0200_v1.1 0.8461984107669186 21 Kfl00086_0160 (at1g60900 : 89.7) U2 snRNP auxilliary factor, large subunit, splicing factor; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: mRNA processing; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), U2 snRNP auxilliary factor, large subunit, splicing factor (InterPro:IPR006529); BEST Arabidopsis thaliana protein match is: U2 snRNP auxilliary factor, large subunit, splicing factor (TAIR:AT4G36690.4); Has 95343 Blast hits to 42389 proteins in 1915 species: Archae - 82; Bacteria - 12197; Metazoa - 47091; Fungi - 9469; Plants - 8106; Viruses - 663; Other Eukaryotes - 17735 (source: NCBI BLink). & (reliability: 179.4) & (original description: no original description) kfl00086_0160_v1.1 0.8416583597889846 22 Kfl00799_0050 (at5g49930 : 730.0) embryo defective 1441 (emb1441); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fibronectin-binding A, N-terminal (InterPro:IPR008616), Protein of unknown function DUF3441 (InterPro:IPR021846), Zinc finger, CCHC-type (InterPro:IPR001878), Protein of unknown function DUF814 (InterPro:IPR008532); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1460.0) & (original description: no original description) kfl00799_0050_v1.1 0.8399072580979466 23 Kfl00486_0030 (at4g03430 : 1197.0) Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes.; EMBRYO DEFECTIVE 2770 (EMB2770); FUNCTIONS IN: binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, response to cold, response to abiotic stimulus; LOCATED IN: nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), PRP1 splicing factor, N-terminal (InterPro:IPR010491), Ubiquitin supergroup (InterPro:IPR019955), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: beta-galactosidase 14 (TAIR:AT4G38590.1); Has 3874 Blast hits to 2098 proteins in 386 species: Archae - 98; Bacteria - 366; Metazoa - 1194; Fungi - 916; Plants - 656; Viruses - 0; Other Eukaryotes - 644 (source: NCBI BLink). & (q9fns4|mbb1_chlre : 97.1) PsbB mRNA maturation factor Mbb1, chloroplast precursor - Chlamydomonas reinhardtii & (reliability: 2394.0) & (original description: no original description) kfl00486_0030_v1.1 0.8381286410352246 24 Kfl00132_0050 no hits & (original description: no original description) kfl00132_0050_v1.1 0.8360739918176051 25 Kfl00081_0140 (at3g15120 : 365.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: cell division cycle protein 48-related / CDC48-related (TAIR:AT1G05910.1); Has 80986 Blast hits to 58843 proteins in 3591 species: Archae - 1718; Bacteria - 20912; Metazoa - 22400; Fungi - 8848; Plants - 5536; Viruses - 480; Other Eukaryotes - 21092 (source: NCBI BLink). & (q96372|cdc48_capan : 155.0) Cell division cycle protein 48 homolog - Capsicum annuum (Bell pepper) & (reliability: 730.0) & (original description: no original description) kfl00081_0140_v1.1 0.8341445545922324 39 Kfl00014_0350 no hits & (original description: no original description) kfl00014_0350_v1.1 0.8334624527819052 27 Kfl00418_0110 no hits & (original description: no original description) kfl00418_0110_v1.1 0.8305521238458909 65 Kfl00006_0440 (at5g23080 : 421.0) Interacts with TATA-box binding protein 2. Contains domains with strong similarity to G-patch and SWAP domains, characteristic of RNA binding and processing proteins. Colocalizes with the splicing regulator SRp34 to subnuclear particles. Role in RNA binding or processing. Mutants display developmental defects, including reduced plant height, polycotyly, and reduced vascularization. Strong genetic interaction between TGH and AMP1.; TOUGH (TGH); FUNCTIONS IN: protein binding, RNA binding; INVOLVED IN: multicellular organismal development, phloem or xylem histogenesis, RNA processing; LOCATED IN: nucleus; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1604 (InterPro:IPR011666), SWAP/Surp (InterPro:IPR000061); Has 34900 Blast hits to 18983 proteins in 949 species: Archae - 12; Bacteria - 1329; Metazoa - 18979; Fungi - 3127; Plants - 2236; Viruses - 165; Other Eukaryotes - 9052 (source: NCBI BLink). & (reliability: 842.0) & (original description: no original description) kfl00006_0440_v1.1 0.8276825603344627 50 Kfl00035_0130 no hits & (original description: no original description) kfl00035_0130_v1.1 0.8271633925070759 30 Kfl00550_0070 (at1g73960 : 656.0) TBP-associated factor 2 (TAF2); FUNCTIONS IN: metallopeptidase activity, zinc ion binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M1, membrane alanine aminopeptidase, N-terminal (InterPro:IPR014782); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 1312.0) & (original description: no original description) kfl00550_0070_v1.1 0.8244639243417712 46 Kfl00050_0270 (at1g03910 : 575.0) EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cactin protein, cactus-binding domain, C-terminal (InterPro:IPR019134), Cactin, central region (InterPro:IPR018816); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G36815.2). & (reliability: 1150.0) & (original description: no original description) kfl00050_0270_v1.1 0.822269474226509 32 Kfl00233_0070 (at4g25610 : 99.4) C2H2-like zinc finger protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); Has 400 Blast hits to 392 proteins in 117 species: Archae - 0; Bacteria - 39; Metazoa - 136; Fungi - 49; Plants - 38; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink). & (reliability: 198.8) & (original description: no original description) kfl00233_0070_v1.1 0.8204755623263442 33 Kfl00065_0030 no hits & (original description: no original description) kfl00065_0030_v1.1 0.818673627438047 34 Kfl00233_0180 (at3g50380 : 153.0) INVOLVED IN: protein localization; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein (InterPro:IPR009543); Has 365 Blast hits to 355 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 156; Fungi - 111; Plants - 61; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). & (reliability: 306.0) & (original description: no original description) kfl00233_0180_v1.1 0.8174250122726829 35 Kfl00135_0180 (at1g11060 : 93.6) WAPL (Wings apart-like protein regulation of heterochromatin) protein; BEST Arabidopsis thaliana protein match is: WAPL (Wings apart-like protein regulation of heterochromatin) protein (TAIR:AT1G61030.1); Has 319 Blast hits to 253 proteins in 105 species: Archae - 2; Bacteria - 73; Metazoa - 168; Fungi - 7; Plants - 48; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). & (reliability: 187.2) & (original description: no original description) kfl00135_0180_v1.1 0.8171044440077947 36 Kfl00646_0030 (at5g08630 : 136.0) DDT domain-containing protein; CONTAINS InterPro DOMAIN/s: DDT domain superfamily (InterPro:IPR018501), DDT domain (InterPro:IPR004022), DDT domain, subgroup (InterPro:IPR018500), WSTF/Acf1/Cbp146 (InterPro:IPR013136); Has 7496 Blast hits to 4698 proteins in 418 species: Archae - 4; Bacteria - 337; Metazoa - 2683; Fungi - 719; Plants - 380; Viruses - 89; Other Eukaryotes - 3284 (source: NCBI BLink). & (reliability: 272.0) & (original description: no original description) kfl00646_0030_v1.1 0.8159357145527509 37 Kfl00395_0140 no hits & (original description: no original description) kfl00395_0140_v1.1 0.8118500628564673 38 Kfl00135_0030 (at1g72390 : 90.9) CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink). & (reliability: 181.8) & (original description: no original description) kfl00135_0030_v1.1 0.8109988645318357 75 Kfl00363_0110 (at1g33520 : 177.0) Has single homolog in Arabidopsis, also homologs in human, mouse and C. elegans; contains one G-patch domain (known to mediate RNA-protein interactions) and two KOW domains (may bind RNA and/or protein); localized to the nucleus; mutant suppresses high SA levels and constitutive disease resistance in snc1 npr1 background; required for basal resistance against Pseudomonas syringae maculicola ES4326 and R gene-mediated resistance specified by RPM1, PPS4 and RPP4;; modifier of snc1, 2 (MOS2); CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467), KOW (InterPro:IPR005824); BEST Arabidopsis thaliana protein match is: D111/G-patch domain-containing protein (TAIR:AT4G25020.1); Has 453 Blast hits to 441 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 209; Fungi - 80; Plants - 100; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink). & (reliability: 354.0) & (original description: no original description) kfl00363_0110_v1.1 0.8088241158293527 40 Kfl00024_0040 (at3g17740 : 501.0) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1740 (InterPro:IPR013633); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17712.1); Has 409 Blast hits to 335 proteins in 133 species: Archae - 1; Bacteria - 0; Metazoa - 140; Fungi - 188; Plants - 42; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). & (reliability: 1002.0) & (original description: no original description) kfl00024_0040_v1.1 0.8039450489384876 58 Kfl00291_0020 no hits & (original description: no original description) kfl00291_0020_v1.1 0.801673020089439 43 Kfl00003_0080 no hits & (original description: no original description) kfl00003_0080_v1.1 0.8010404260012605 56 Kfl00249_0130 no hits & (original description: no original description) kfl00249_0130_v1.1 0.8008379926031949 82 Kfl00432_0070 (at1g16800 : 598.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G30100.1); Has 9771 Blast hits to 8579 proteins in 1344 species: Archae - 197; Bacteria - 2032; Metazoa - 2727; Fungi - 1277; Plants - 815; Viruses - 364; Other Eukaryotes - 2359 (source: NCBI BLink). & (reliability: 1196.0) & (original description: no original description) kfl00432_0070_v1.1 0.8002469729632139 56 Kfl00061_0370 (at5g55310 : 669.0) Encodes one of two Arabidopsis type-I DNA topoisomerase I genes. Reducing the level of expression of this gene in a top1alpha (At5g55300) mutant background causes seedling lethality.; DNA topoisomerase 1 beta (TOP1BETA); FUNCTIONS IN: DNA topoisomerase type I activity; INVOLVED IN: DNA topological change; LOCATED IN: membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase I, DNA binding, mixed alpha/beta motif, eukaryotic-type (InterPro:IPR013030), DNA topoisomerase I, DNA binding, eukaryotic-type (InterPro:IPR008336), DNA topoisomerase I, C-terminal (InterPro:IPR001631), DNA topoisomerase I, active site (InterPro:IPR018521), DNA topoisomerase I, catalytic core, alpha/beta subdomain, eukaryotic-type (InterPro:IPR014727), DNA topoisomerase I, catalytic core, eukaryotic-type (InterPro:IPR013500), DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type (InterPro:IPR014711), DNA topoisomerase I, C-terminal, eukaryotic-type (InterPro:IPR013499), DNA breaking-rejoining enzyme, catalytic core (InterPro:IPR011010); BEST Arabidopsis thaliana protein match is: DNA topoisomerase I alpha (TAIR:AT5G55300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (p93119|top1_dauca : 548.0) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I) - Daucus carota (Carrot) & (reliability: 1338.0) & (original description: no original description) kfl00061_0370_v1.1 0.8001539106978404 47 Kfl00402_0100 (at1g27320 : 112.0) Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2.; histidine kinase 3 (HK3); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), CHASE (InterPro:IPR006189), Signal transduction histidine kinase, core (InterPro:IPR005467), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: histidine kinase 2 (TAIR:AT5G35750.1); Has 124308 Blast hits to 110912 proteins in 3043 species: Archae - 772; Bacteria - 110408; Metazoa - 31; Fungi - 2185; Plants - 2022; Viruses - 28; Other Eukaryotes - 8862 (source: NCBI BLink). & (o49230|etr1_braol : 92.0) Ethylene receptor (EC 2.7.13.3) - Brassica oleracea (Wild cabbage) & (reliability: 224.0) & (original description: no original description) kfl00402_0100_v1.1 0.7921505706788277 65 Kfl00147_0210 (at5g58130 : 87.4) Encodes ROS3 (repressor of silencing 3), a RNA-binding protein required for DNA demethylation.; REPRESSOR OF SILENCING 3 (ROS3); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 14321 Blast hits to 7664 proteins in 903 species: Archae - 313; Bacteria - 6242; Metazoa - 2615; Fungi - 1429; Plants - 503; Viruses - 131; Other Eukaryotes - 3088 (source: NCBI BLink). & (reliability: 174.8) & (original description: no original description) kfl00147_0210_v1.1 0.7897912385670249 71 Kfl00183_0130 (at5g16780 : 273.0) Encodes a protein belonging to SART-1 family. The gene is expressed in the basal region of the developing embryo during heart stage. Phenotypic analyses of dot2 mutants suggest that this protein plays a role in root, shoot, and flower development. dot2 mutants are dwarved plants that display an aberrant spurred leaf venation pattern and fail to flower. In the roots DOT2 appears to be require for normal meristem organization and maintenance and the proper expression of PIN and PLT genes.; DEFECTIVELY ORGANIZED TRIBUTARIES 2 (DOT2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 9 processes; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SART-1 protein (InterPro:IPR005011); BEST Arabidopsis thaliana protein match is: SART-1 family (TAIR:AT3G14700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 546.0) & (original description: no original description) kfl00183_0130_v1.1 0.7879688908570726 96 Kfl00304_0050 (at3g63400 : 226.0) Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1). & (q39613|cyph_catro : 217.0) Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-binding protein) - Catharanthus roseus (Rosy periwinkle) (Madagascar periwinkle) & (reliability: 452.0) & (original description: no original description) kfl00304_0050_v1.1 0.786102097502199 80 Kfl00136_0230 no hits & (original description: no original description) kfl00136_0230_v1.1 0.7823352962148028 58 Kfl00121_0010 (at3g16840 : 451.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 60083 Blast hits to 51461 proteins in 3186 species: Archae - 589; Bacteria - 20345; Metazoa - 13239; Fungi - 7387; Plants - 3446; Viruses - 273; Other Eukaryotes - 14804 (source: NCBI BLink). & (q41382|rh7_spiol : 141.0) DEAD-box ATP-dependent RNA helicase 7 (EC 3.6.1.-) - Spinacia oleracea (Spinach) & (reliability: 902.0) & (original description: no original description) kfl00121_0010_v1.1 0.7812280045928852 86 Kfl00387_0060 (at1g11320 : 85.1) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plastid; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 46 Blast hits to 46 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 170.2) & (original description: no original description) kfl00387_0060_v1.1 0.7795020463558248 61 Kfl00418_0120 no hits & (original description: no original description) kfl00418_0120_v1.1 0.7788057542169489 74 Kfl00022_0390 (at3g48195 : 233.0) Phox (PX) domain-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: intracellular signaling pathway, cell communication; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Phox-like (InterPro:IPR001683); Has 654 Blast hits to 601 proteins in 103 species: Archae - 0; Bacteria - 16; Metazoa - 551; Fungi - 11; Plants - 27; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink). & (reliability: 466.0) & (original description: no original description) kfl00022_0390_v1.1 0.778536276147859 63 Kfl00025_0150 (at3g24080 : 114.0) KRR1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: KRR1 interacting protein 1, subgroup (InterPro:IPR007851), KRR1 interacting protein 1 (InterPro:IPR018034); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 228.0) & (original description: no original description) kfl00025_0150_v1.1 0.7768927608362456 64 Kfl00034_0250 no hits & (original description: no original description) kfl00034_0250_v1.1 0.7742423269958173 67 Kfl00610_0035 no hits & (original description: no original description) kfl00610_0035_v1.1 0.7736722934229242 68 Kfl00401_0010 no hits & (original description: no original description) kfl00401_0010_v1.1 0.7702030789712715 71 Kfl00941_0010 no hits & (original description: no original description) kfl00941_0010_v1.1 0.7669569953114058 78 Kfl00072_0320 (at1g52500 : 254.0) Encodes one of the splice variants of Arabidopsis thaliana MutM homolog. Encodes a formamidopyrimidine-DNA glycosylase that has abasic lyase activity and is able to nick double- stranded oligonucleotides containing 8-oxo-7,8-dihydroguanine (8-oxoG) in vitro.; MUTM homolog-1 (MMH-1); CONTAINS InterPro DOMAIN/s: Ribosomal protein S13-like, H2TH (InterPro:IPR010979), DNA glycosylase/AP lyase, H2TH DNA-binding (InterPro:IPR015886), DNA glycosylase/AP lyase, catalytic domain (InterPro:IPR012319), DNA glycosylase/AP lyase (InterPro:IPR000191); Has 11102 Blast hits to 10156 proteins in 2240 species: Archae - 10; Bacteria - 5065; Metazoa - 1812; Fungi - 570; Plants - 321; Viruses - 42; Other Eukaryotes - 3282 (source: NCBI BLink). & (reliability: 508.0) & (original description: no original description) kfl00072_0320_v1.1 0.7667840875074738 93 Kfl00065_0130 (at3g49601 : 108.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 216.0) & (original description: no original description) kfl00065_0130_v1.1 0.7653883778906239 76 Kfl00758_0010 (at5g41020 : 172.0) myb family transcription factor; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), MYB-like (InterPro:IPR017877), Myb transcription factor (InterPro:IPR015495); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 344.0) & (original description: no original description) kfl00758_0010_v1.1 0.7627660564289114 78 Kfl00061_0120 (at1g65660 : 655.0) Encodes a CCHC zinc finger protein that may function as a step II splicing factor. In an epigenetic allele of SMP1 (in which SMP1 and SMP2 mRNA is reduced) organs are smaller and contain fewer cells.; SWELLMAP 1 (SMP1); CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Pre-mRNA splicing Prp18-interacting factor (InterPro:IPR021715); BEST Arabidopsis thaliana protein match is: Pre-mRNA splicing Prp18-interacting factor (TAIR:AT4G37120.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1310.0) & (original description: no original description) kfl00061_0120_v1.1 0.7618057396290534 79 Kfl00094_0030 no hits & (original description: no original description) kfl00094_0030_v1.1 0.7614967837184222 80 Kfl00414_0110 no hits & (original description: no original description) kfl00414_0110_v1.1 0.7609128413795447 81 Kfl00608_0040 (at1g28060 : 446.0) Pre-mRNA-splicing factor 3; CONTAINS InterPro DOMAIN/s: Pre-mRNA-splicing factor 3 (InterPro:IPR013881); BEST Arabidopsis thaliana protein match is: Pre-mRNA-splicing factor 3 (TAIR:AT3G55930.1); Has 22923 Blast hits to 12760 proteins in 707 species: Archae - 18; Bacteria - 1085; Metazoa - 11525; Fungi - 3053; Plants - 1999; Viruses - 93; Other Eukaryotes - 5150 (source: NCBI BLink). & (reliability: 892.0) & (original description: no original description) kfl00608_0040_v1.1 0.7588592972038359 82 Kfl00420_0070 no hits & (original description: no original description) kfl00420_0070_v1.1 0.7567960743888735 85 Kfl00096_g20 no hits & (original description: no original description) kfl00096_g20_v1.1 0.7547811154575568 87 Kfl00217_0030 no hits & (original description: no original description) kfl00217_0030_v1.1 0.7543176766149563 88 Kfl00621_0040 (at1g25540 : 97.8) Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions. Also shown to be a Mediator subunit regulating jasmonate-dependent defense.; PHYTOCHROME AND FLOWERING TIME 1 (PFT1); FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: in 8 processes; LOCATED IN: mediator complex, nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med25, von Willebrand factor type A (InterPro:IPR021419); Has 143907 Blast hits to 47238 proteins in 2114 species: Archae - 36; Bacteria - 15136; Metazoa - 49480; Fungi - 14034; Plants - 10447; Viruses - 822; Other Eukaryotes - 53952 (source: NCBI BLink). & (reliability: 195.6) & (original description: no original description) kfl00621_0040_v1.1 0.7525023758221575 90 Kfl00832_0030 (at5g17900 : 199.0) microfibrillar-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular region; CONTAINS InterPro DOMAIN/s: Micro-fibrillar-associated 1, C-terminal (InterPro:IPR009730); BEST Arabidopsis thaliana protein match is: microfibrillar-associated protein-related (TAIR:AT4G08580.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 398.0) & (original description: no original description) kfl00832_0030_v1.1 0.7430973189770241 99